BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12303
(480 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VP6|A Chain A, Structural Characterization Of Glutamic Acid
Decarboxylase; Insights Into The Mechanism Of
Autoinactivation
pdb|3VP6|B Chain B, Structural Characterization Of Glutamic Acid
Decarboxylase; Insights Into The Mechanism Of
Autoinactivation
Length = 511
Score = 585 bits (1507), Expect = e-167, Method: Compositional matrix adjust.
Identities = 275/485 (56%), Positives = 367/485 (75%), Gaps = 11/485 (2%)
Query: 4 TETFLKQLVNILLNYIKESNDRNEKVLHFYHPAEM-KAM--LDLDIPEKGLPLQKLIDDC 60
T FL ++V+ILLNY++++ DR+ KVL F+HP ++ + M +L++ + L++++ DC
Sbjct: 24 TVQFLLEVVDILLNYVRKTFDRSTKVLDFHHPHQLLEGMEGFNLELSDHPESLEQILVDC 83
Query: 61 FTTLKYQVRTGHPMFMNQLSCGLDVVSMAGEWLIATANTNMFTYEIAPVFILMETVVLEK 120
TLKY VRTGHP F NQLS GLD++ +AGEWL +TANTNMFTYEIAPVF+LME + L+K
Sbjct: 84 RDTLKYGVRTGHPRFFNQLSTGLDIIGLAGEWLTSTANTNMFTYEIAPVFVLMEQITLKK 143
Query: 121 MRQIIGW--QGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCH 178
MR+I+GW + GD I +PGG+ISN+Y+ +AAR+K FP K KG++A+ +LV+FTS+Q H
Sbjct: 144 MREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVP-KLVLFTSEQSH 202
Query: 179 YSVRSCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLG 238
YS++ A G GTDN + + ++RG++IP++ E +LE K KG +PF+VN T+GTTV G
Sbjct: 203 YSIKKAGAALGFGTDNVILIKCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYG 262
Query: 239 AFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTL 298
AFDPI+EIADIC+KYN+WLHVDAAWGGGLL+S+K+RH +L GIERA+SVTWNPH +MG L
Sbjct: 263 AFDPIQEIADICEKYNLWLHVDAAWGGGLLMSRKHRH-KLNGIERANSVTWNPHXMMGVL 321
Query: 299 LQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRA 358
LQCS I K+ G+L CNQM A YLF QDK YDV YDTGDK IQCGRH DIFK WL W+A
Sbjct: 322 LQCSAILVKEKGILQGCNQMHASYLFQQDKHYDVSYDTGDKAIQCGRHVDIFKFWLMWKA 381
Query: 359 KGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLIL--EPEMVNVSFWYLPTRVRNMPHE- 415
KG GFE QI++ +ELAEY+ KIK+ ++F ++ EPE NV FWY+P +R +P
Sbjct: 382 KGTVGFENQINKCLELAEYLYAKIKNR-EEFEMVFNGEPEHTNVCFWYIPQSLRGVPDSP 440
Query: 416 KRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDR 475
+R L ++ P +K MM++GT MVGYQP D NFFR +IS+ A T+ DIDFL+ E++R
Sbjct: 441 QRREKLHKVAPKIKALMMESGTTMVGYQPQGDKANFFRMVISNPAATQSDIDFLIEEIER 500
Query: 476 LGHDL 480
LG DL
Sbjct: 501 LGQDL 505
>pdb|2OKJ|A Chain A, The X-Ray Crystal Structure Of The 67kda Isoform Of
Glutamic Acid Decarboxylase (Gad67)
pdb|2OKJ|B Chain B, The X-Ray Crystal Structure Of The 67kda Isoform Of
Glutamic Acid Decarboxylase (Gad67)
Length = 504
Score = 580 bits (1495), Expect = e-166, Method: Compositional matrix adjust.
Identities = 274/485 (56%), Positives = 366/485 (75%), Gaps = 11/485 (2%)
Query: 4 TETFLKQLVNILLNYIKESNDRNEKVLHFYHPAEM-KAM--LDLDIPEKGLPLQKLIDDC 60
T FL ++V+ILLNY++++ DR+ KVL F+HP ++ + M +L++ + L++++ DC
Sbjct: 21 TVQFLLEVVDILLNYVRKTFDRSTKVLDFHHPHQLLEGMEGFNLELSDHPESLEQILVDC 80
Query: 61 FTTLKYQVRTGHPMFMNQLSCGLDVVSMAGEWLIATANTNMFTYEIAPVFILMETVVLEK 120
TLKY VRTGHP F NQLS GLD++ +AGEWL +TANTNMFTYEIAPVF+LME + L+K
Sbjct: 81 RDTLKYGVRTGHPRFFNQLSTGLDIIGLAGEWLTSTANTNMFTYEIAPVFVLMEQITLKK 140
Query: 121 MRQIIGW--QGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCH 178
MR+I+GW + GD I +PGG+ISN+Y+ +AAR+K FP K KG++A+ +LV+FTS+Q H
Sbjct: 141 MREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVP-KLVLFTSEQSH 199
Query: 179 YSVRSCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLG 238
YS++ A G GTDN + + ++RG++IP++ E +LE K KG +PF+VN T+GTTV G
Sbjct: 200 YSIKKAGAALGFGTDNVILIKCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYG 259
Query: 239 AFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTL 298
AFDPI+EIADIC+KYN+WLHVDAAWGGGLL+S+K+RH +L GIERA+SVTWNPH +MG L
Sbjct: 260 AFDPIQEIADICEKYNLWLHVDAAWGGGLLMSRKHRH-KLNGIERANSVTWNPHXMMGVL 318
Query: 299 LQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRA 358
LQCS I K+ G+L CNQM A YLF DK YDV YDTGDK IQCGRH DIFK WL W+A
Sbjct: 319 LQCSAILVKEKGILQGCNQMCAGYLFQPDKQYDVSYDTGDKAIQCGRHVDIFKFWLMWKA 378
Query: 359 KGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLIL--EPEMVNVSFWYLPTRVRNMPHE- 415
KG GFE QI++ +ELAEY+ KIK+ ++F ++ EPE NV FWY+P +R +P
Sbjct: 379 KGTVGFENQINKCLELAEYLYAKIKNR-EEFEMVFNGEPEHTNVCFWYIPQSLRGVPDSP 437
Query: 416 KRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDR 475
+R L ++ P +K MM++GT MVGYQP D NFFR +IS+ A T+ DIDFL+ E++R
Sbjct: 438 QRREKLHKVAPKIKALMMESGTTMVGYQPQGDKANFFRMVISNPAATQSDIDFLIEEIER 497
Query: 476 LGHDL 480
LG DL
Sbjct: 498 LGQDL 502
>pdb|2OKK|A Chain A, The X-Ray Crystal Structure Of The 65kda Isoform Of
Glutamic Acid Decarboxylase (Gad65)
Length = 497
Score = 551 bits (1420), Expect = e-157, Method: Compositional matrix adjust.
Identities = 255/481 (53%), Positives = 361/481 (75%), Gaps = 8/481 (1%)
Query: 4 TETFLKQLVNILLNYIKESNDRNEKVLHFYHPAEMKAMLDLDIPEKGLPLQKLIDDCFTT 63
T FL+ ++NILL Y+ +S DR+ KV+ F++P E+ + ++ ++ L++++ C TT
Sbjct: 20 TLAFLQDVMNILLQYVVKSFDRSTKVIDFHYPNELLQEYNWELADQPQNLEEILMHCQTT 79
Query: 64 LKYQVRTGHPMFMNQLSCGLDVVSMAGEWLIATANTNMFTYEIAPVFILMETVVLEKMRQ 123
LKY ++TGHP + NQLS GLD+V +A +WL +TANTNMFTYEIAPVF+L+E V L+KMR+
Sbjct: 80 LKYAIKTGHPRYFNQLSTGLDMVGLAADWLTSTANTNMFTYEIAPVFVLLEYVTLKKMRE 139
Query: 124 IIGWQGG--DSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSV 181
IIGW GG D I +PGG+ISN+YA + AR KMFP KEKG++A+ +L+ FTS+ H+S+
Sbjct: 140 IIGWPGGSGDGIFSPGGAISNMYAMMIARFKMFPEVKEKGMAALP-RLIAFTSEHSHFSL 198
Query: 182 RSCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFD 241
+ AA G+GTD+ + + D+RG++IPS+LER +LE K KG +PF V+ T+GTTV GAFD
Sbjct: 199 KKGAAALGIGTDSVILIKCDERGKMIPSDLERRILEAKQKGFVPFLVSATAGTTVYGAFD 258
Query: 242 PIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQC 301
P+ +ADIC+KY +W+HVDAAWGGGLL+S+K++ +L+G+ERA+SVTWNPH +MG LQC
Sbjct: 259 PLLAVADICKKYKIWMHVDAAWGGGLLMSRKHKW-KLSGVERANSVTWNPHXMMGVPLQC 317
Query: 302 STIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGD 361
S + +++GL+ +CNQM A YLF QDK YD+ YDTGDK +QCGRH D+FKLWL WRAKG
Sbjct: 318 SALLVREEGLMQNCNQMHASYLFQQDKHYDLSYDTGDKALQCGRHVDVFKLWLMWRAKGT 377
Query: 362 EGFEKQIDRLMELAEYMVKKIKSMPDKFYLILE--PEMVNVSFWYLPTRVRNMP-HEKRL 418
GFE +D+ +ELAEY+ IK+ + + ++ + P+ NV FWY+P +R + +E+R+
Sbjct: 378 TGFEAHVDKCLELAEYLYNIIKNR-EGYEMVFDGKPQHTNVCFWYIPPSLRTLEDNEERM 436
Query: 419 NILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGH 478
+ L ++ P++K RMM+ GT MV YQPL D NFFR +IS+ A T DIDFL+ E++RLG
Sbjct: 437 SRLSKVAPVIKARMMEYGTTMVSYQPLGDKVNFFRMVISNPAATHQDIDFLIEEIERLGQ 496
Query: 479 D 479
D
Sbjct: 497 D 497
>pdb|2JIS|A Chain A, Human Cysteine Sulfinic Acid Decarboxylase (Csad) In
Complex With Plp.
pdb|2JIS|B Chain B, Human Cysteine Sulfinic Acid Decarboxylase (Csad) In
Complex With Plp
Length = 515
Score = 484 bits (1247), Expect = e-137, Method: Compositional matrix adjust.
Identities = 229/485 (47%), Positives = 333/485 (68%), Gaps = 14/485 (2%)
Query: 3 TTETFLKQLVNILLN-YIKESNDRNEKVLHFYHPAEMKAMLDLDIPEKGLPLQKLIDDCF 61
E L+ + ++++ I++ ++KV + P E+K +LDL++ +G +++++ C
Sbjct: 38 AVEALLRAVFGVVVDEAIQKGTSVSQKVCEWKEPEELKQLLDLELRSQGESQKQILERCR 97
Query: 62 TTLKYQVRTGHPMFMNQLSCGLDVVSMAGEWLIATANTNMFTYEIAPVFILMETVVLEKM 121
++Y V+TGHP F NQL GLD ++AG + + NT+ +TYEIAPVF+LME VL K+
Sbjct: 98 AVIRYSVKTGHPRFFNQLFSGLDPHALAGRIITESLNTSQYTYEIAPVFVLMEEEVLRKL 157
Query: 122 RQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSV 181
R ++GW GD I PGGSISN+YA AR++ +P K++GL + L +FTS +CHYS+
Sbjct: 158 RALVGWSSGDGIFCPGGSISNMYAVNLARYQRYPDCKQRGLRTLP-PLALFTSKECHYSI 216
Query: 182 RSCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFD 241
+ AA GLGTD+ V +D+RG+++P +LER + +A+G +PF V+ TSGTTVLGAFD
Sbjct: 217 QKGAAFLGLGTDSVRVVKADERGKMVPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFD 276
Query: 242 PIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQC 301
P+E IAD+CQ++ +WLHVDAAWGG +LLS+ +RH L GI+RADSV WNPHKL+ LQC
Sbjct: 277 PLEAIADVCQRHGLWLHVDAAWGGSVLLSQTHRH-LLDGIQRADSVAWNPHKLLAAGLQC 335
Query: 302 STIHFKQ-DGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKG 360
S + + LL C+ A YLF QDK YDV DTGDKV+QCGR D KLWL W+A+G
Sbjct: 336 SALLLQDTSNLLKRCHGSQASYLFQQDKFYDVALDTGDKVVQCGRRVDCLKLWLMWKAQG 395
Query: 361 DEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNMP-----HE 415
D+G E++ID+ LA Y+V+++K + F L++EPE VNV FW++P +R HE
Sbjct: 396 DQGLERRIDQAFVLARYLVEEMKKR-EGFELVMEPEFVNVCFWFVPPSLRGKQESPDYHE 454
Query: 416 KRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDR 475
+ L ++ P+LK RM++ G+MM+GYQP NFFR +++++A+T D+DFLL E++R
Sbjct: 455 R----LSKVAPVLKERMVKEGSMMIGYQPHGTRGNFFRVVVANSALTCADMDFLLNELER 510
Query: 476 LGHDL 480
LG DL
Sbjct: 511 LGQDL 515
>pdb|3RBF|A Chain A, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Apo Form
pdb|3RBF|B Chain B, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Apo Form
pdb|3RBL|A Chain A, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Apo Form
pdb|3RBL|B Chain B, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Apo Form
pdb|3RCH|B Chain B, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Open Conformation With Llp
And Plp Bound To Chain-A And Chain- B Respectively
Length = 480
Score = 137 bits (346), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 105/401 (26%), Positives = 183/401 (45%), Gaps = 23/401 (5%)
Query: 9 KQLVNILLNYIKESNDRNEKVLHFYHPAEMKAMLDLDIPEKGLPLQKLIDDCFTTLKYQV 68
K++V+ + NY++ R +V P ++ ++ P++ + +I+D + V
Sbjct: 11 KEMVDYVANYMEGIEGR--QVYPDVEPGYLRPLIPAAAPQEPDTFEDIINDVEKIIMPGV 68
Query: 69 RTGH-PMFMNQLSCGLDVVSMAGEWLIATANTNMFTYEIAPVFILMETVVLEKMRQII-- 125
H P F +M + L F++ +P +ETV+++ + +++
Sbjct: 69 THWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSWAASPACTELETVMMDWLGKMLEL 128
Query: 126 --------GWQGGDSILAPGGSISNLYAFLAAR----HKMFPTYKEKGLSAIKGQLVMFT 173
+GG ++ S + L A LAAR H++ E +AI +LV ++
Sbjct: 129 PKAFLNEKAGEGG-GVIQGSASEATLVALLAARTKVIHRLQAASPELTQAAIMEKLVAYS 187
Query: 174 SDQCHYSVRSCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSG 233
SDQ H SV + G+ +PSD + S L+ + KA G IPFF+ T G
Sbjct: 188 SDQAHSSVERAGLIGGVKLK---AIPSDGNFAMRASALQEALERDKAAGLIPFFMVATLG 244
Query: 234 TTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHK 293
TT +FD + E+ IC K ++WLHVDAA+ G + ++RH L G+E ADS +NPHK
Sbjct: 245 TTTCCSFDNLLEVGPICNKEDIWLHVDAAYAGSAFICPEFRH-LLNGVEFADSFNFNPHK 303
Query: 294 LMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLW 353
+ CS + K+ L ++ YL + + D I GR K+W
Sbjct: 304 WLLVNFDCSAMWVKKRTDLTGAFRLDPTYLKHSHQDSGLITDYRHWQIPLGRRFRSLKMW 363
Query: 354 LQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILE 394
+R G +G + I + ++L+ ++ P +F + +E
Sbjct: 364 FVFRMYGVKGLQAYIRKHVQLSHEFESLVRQDP-RFEICVE 403
>pdb|3RCH|A Chain A, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Open Conformation With Llp
And Plp Bound To Chain-A And Chain- B Respectively
Length = 480
Score = 135 bits (341), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 104/401 (25%), Positives = 182/401 (45%), Gaps = 23/401 (5%)
Query: 9 KQLVNILLNYIKESNDRNEKVLHFYHPAEMKAMLDLDIPEKGLPLQKLIDDCFTTLKYQV 68
K++V+ + NY++ R +V P ++ ++ P++ + +I+D + V
Sbjct: 11 KEMVDYVANYMEGIEGR--QVYPDVEPGYLRPLIPAAAPQEPDTFEDIINDVEKIIMPGV 68
Query: 69 RTGH-PMFMNQLSCGLDVVSMAGEWLIATANTNMFTYEIAPVFILMETVVLEKMRQII-- 125
H P F +M + L F++ +P +ETV+++ + +++
Sbjct: 69 THWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSWAASPACTELETVMMDWLGKMLEL 128
Query: 126 --------GWQGGDSILAPGGSISNLYAFLAAR----HKMFPTYKEKGLSAIKGQLVMFT 173
+GG ++ S + L A LAAR H++ E +AI +LV ++
Sbjct: 129 PKAFLNEKAGEGG-GVIQGSASEATLVALLAARTKVIHRLQAASPELTQAAIMEKLVAYS 187
Query: 174 SDQCHYSVRSCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSG 233
SDQ H SV + G+ +PSD + S L+ + KA G IPFF+ T G
Sbjct: 188 SDQAHSSVERAGLIGGVKLK---AIPSDGNFAMRASALQEALERDKAAGLIPFFMVATLG 244
Query: 234 TTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHK 293
TT +FD + E+ IC K ++WLHVDAA+ G + ++RH L G+E ADS +NPH
Sbjct: 245 TTTCCSFDNLLEVGPICNKEDIWLHVDAAYAGSAFICPEFRH-LLNGVEFADSFNFNPHX 303
Query: 294 LMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLW 353
+ CS + K+ L ++ YL + + D I GR K+W
Sbjct: 304 WLLVNFDCSAMWVKKRTDLTGAFRLDPTYLKHSHQDSGLITDYRHWQIPLGRRFRSLKMW 363
Query: 354 LQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILE 394
+R G +G + I + ++L+ ++ P +F + +E
Sbjct: 364 FVFRMYGVKGLQAYIRKHVQLSHEFESLVRQDP-RFEICVE 403
>pdb|3K40|A Chain A, Crystal Structure Of Drosophila 3,4-Dihydroxyphenylalanine
Decarboxylase
pdb|3K40|B Chain B, Crystal Structure Of Drosophila 3,4-Dihydroxyphenylalanine
Decarboxylase
Length = 475
Score = 128 bits (322), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 115/432 (26%), Positives = 182/432 (42%), Gaps = 24/432 (5%)
Query: 7 FLKQLVNILLNYIKESNDRNEKVLHFYHPAEMKAMLDLDIPEKGLPLQKLIDDCFTTLKY 66
F K +V+ + Y++ N R +VL P +K ++ PEK Q ++ D +
Sbjct: 9 FAKTMVDFIAEYLE--NIRERRVLPEVKPGYLKPLIPDAAPEKPEKWQDVMQDIERVIMP 66
Query: 67 QVRTGH-PMFMNQLSCGLDVVSMAGEWLIATANTNMFTYEIAPVFILMETVVLEKMRQII 125
V H P F ++ + L FT+ +P +E V+++ + +++
Sbjct: 67 GVTHWHSPKFHAYFPTANSYPAIVADMLSGAIACIGFTWIASPACTELEVVMMDWLGKML 126
Query: 126 ---------GWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLS----AIKGQLVMF 172
G ++ S S L A L A+ K KE I G+LV +
Sbjct: 127 ELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLKEVKELHPEWDEHTILGKLVGY 186
Query: 173 TSDQCHYSVRSCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTS 232
SDQ H SV + G+ + + R+ + LE+ + + A+G IPF+ T
Sbjct: 187 CSDQAHSSVERAGLLGGVKLRSV----QSENHRMRGAALEKAIEQDVAEGLIPFYAVVTL 242
Query: 233 GTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPH 292
GTT AFD ++E + K+N+W+HVDAA+ G + +YRH + GIE ADS +NPH
Sbjct: 243 GTTNSCAFDYLDECGPVGNKHNLWIHVDAAYAGSAFICPEYRH-LMKGIESADSFNFNPH 301
Query: 293 KLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKL 352
M CS + K ++ N + + L+++ + D I GR KL
Sbjct: 302 XWMLVNFDCSAMWLKDPSWVV--NAFNVDPLYLKHDMQGSAPDYRHWQIPLGRRFRALKL 359
Query: 353 WLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNM 412
W R G E + I R A+ + +F L E M V F + RN
Sbjct: 360 WFVLRLYGVENLQAHIRRHCNFAK-QFGDLCVADSRFELAAEINMGLVCFRLKGSNERNE 418
Query: 413 PHEKRLNILGEI 424
KR+N G I
Sbjct: 419 ALLKRINGRGHI 430
>pdb|1JS3|A Chain A, Crystal Structure Of Dopa Decarboxylase In Complex With
The Inhibitor Carbidopa
pdb|1JS3|B Chain B, Crystal Structure Of Dopa Decarboxylase In Complex With
The Inhibitor Carbidopa
pdb|1JS6|A Chain A, Crystal Structure Of Dopa Decarboxylase
pdb|1JS6|B Chain B, Crystal Structure Of Dopa Decarboxylase
Length = 486
Score = 126 bits (316), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 101/381 (26%), Positives = 173/381 (45%), Gaps = 20/381 (5%)
Query: 9 KQLVNILLNYIKESNDRNEKVLHFYHPAEMKAMLDLDIPEKGLPLQKLIDDCFTTLKYQV 68
K++V+ + +Y++ R +V P ++ ++ P++ + ++ D + V
Sbjct: 11 KEMVDYMADYLEGIEGR--QVYPDVQPGYLRPLIPATAPQEPDTFEDILQDVEKIIMPGV 68
Query: 69 RTGH-PMFMNQLSCGLDVVSMAGEWLIATANTNMFTYEIAPVFILMETVVLE---KMRQI 124
H P F +M + L F++ +P +ETV+++ KM Q+
Sbjct: 69 THWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSWAASPACTELETVMMDWLGKMLQL 128
Query: 125 ------IGWQGGDSILAPGGSISNLYAFLAARHKMFPTYK--EKGLS--AIKGQLVMFTS 174
G ++ S + L A LAAR K+ + GL+ A+ +LV + S
Sbjct: 129 PEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYAS 188
Query: 175 DQCHYSVRSCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGT 234
DQ H SV + G+ +PSD + + S L+ + KA G IPFFV T GT
Sbjct: 189 DQAHSSVERAGLIGGVKLK---AIPSDGKFAMRASALQEALERDKAAGLIPFFVVATLGT 245
Query: 235 TVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKL 294
T +FD + E+ IC + ++WLHVDAA+ G + ++RH L G+E ADS +NPHK
Sbjct: 246 TSCCSFDNLLEVGPICHEEDIWLHVDAAYAGSAFICPEFRH-LLNGVEFADSFNFNPHKW 304
Query: 295 MGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWL 354
+ CS + K+ L ++ YL + + D + GR K+W
Sbjct: 305 LLVNFDCSAMWVKRRTDLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRRFRSLKMWF 364
Query: 355 QWRAKGDEGFEKQIDRLMELA 375
+R G +G + I + ++L+
Sbjct: 365 VFRMYGVKGLQAYIRKHVQLS 385
>pdb|2QMA|A Chain A, Crystal Structure Of Glutamate Decarboxylase Domain Of
Diaminobutyrate-Pyruvate Transaminase And
L-2,4-Diaminobutyrate Decarboxylase From Vibrio
Parahaemolyticus
pdb|2QMA|B Chain B, Crystal Structure Of Glutamate Decarboxylase Domain Of
Diaminobutyrate-Pyruvate Transaminase And
L-2,4-Diaminobutyrate Decarboxylase From Vibrio
Parahaemolyticus
Length = 497
Score = 119 bits (299), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 123/502 (24%), Positives = 220/502 (43%), Gaps = 51/502 (10%)
Query: 1 MHTTETFLKQLVNILLNYIKESNDRNEKVLHFYHPAEMKAMLD----LDIPEKGLPLQKL 56
+HT E + ++ + E+V Y + KA+ D +D+ K PL+ +
Sbjct: 24 IHTGELGSAEFASVXSHTTSAXKSVFEQVNAPYSGXDPKALEDAINAVDLDNKNAPLKSV 83
Query: 57 IDDCFTTL-KYQVRTGHPMFMNQLSCGLDVVSMAGEWLIATANTNMFTYEIAPVFILMET 115
IDD + K + T HP + L ++A E IA N + +++ A +E
Sbjct: 84 IDDVAELVAKNAIFTQHPDCIAHLHTPPLXPAVAAEAXIAALNQSXDSWDQASSATYVE- 142
Query: 116 VVLEKMRQIIGW--------QGGDSILAPGGSISNLYAFLAARHKMFP-----TYKEKGL 162
++++ W + D I GG+ SN AR + + ++ GL
Sbjct: 143 ------QKVVNWLCDKYDLSEKADGIFTSGGTQSNQXGLXLARDWIADKLSGHSIQKLGL 196
Query: 163 SAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKG 222
+L + S + H++V+ A+ GLG V ++ G ++L+ ++ + KA+G
Sbjct: 197 PDYADKLRIVCSKKSHFTVQKSASWXGLGEKAVXTVDANADGTXDITKLDEVIAQAKAEG 256
Query: 223 DIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIE 282
IPF + T+GTT GA D ++ IAD K++ W HVD A+GG L+LS RL G+E
Sbjct: 257 LIPFAIVGTAGTTDHGAIDDLDFIADXAVKHDXWXHVDGAYGGALILSS--HKSRLKGVE 314
Query: 283 RADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDT----GD 338
RA S++ + HKL + C G L+ ++ + ++L + +D D
Sbjct: 315 RAHSISVDFHKLFYQTISC--------GALLVNDKSNFKFLLHHADYLNREHDELPNLVD 366
Query: 339 KVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMV 398
K I + D K++ + G + D L+ + I++ D+F L+ EP +
Sbjct: 367 KSIATTKRFDALKVFXTXQNVGPKALGDXYDHLLAQTLEVADXIRTN-DQFELLAEPSLS 425
Query: 399 NVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISS 458
V F HE L E+ L+ + G ++G + + D + I +
Sbjct: 426 TVLF--------RATHETA--DLDELNKALRLEALTRGIAVLG-ETIVDGKTALKFTILN 474
Query: 459 AAVTEGDIDFLLTEMDRLGHDL 480
+T D + LL++++ L +L
Sbjct: 475 PCLTTSDFESLLSKINXLAVEL 496
>pdb|4E1O|A Chain A, Human Histidine Decarboxylase Complex With Histidine
Methyl Ester (Hme)
pdb|4E1O|B Chain B, Human Histidine Decarboxylase Complex With Histidine
Methyl Ester (Hme)
pdb|4E1O|C Chain C, Human Histidine Decarboxylase Complex With Histidine
Methyl Ester (Hme)
pdb|4E1O|D Chain D, Human Histidine Decarboxylase Complex With Histidine
Methyl Ester (Hme)
pdb|4E1O|E Chain E, Human Histidine Decarboxylase Complex With Histidine
Methyl Ester (Hme)
pdb|4E1O|F Chain F, Human Histidine Decarboxylase Complex With Histidine
Methyl Ester (Hme)
Length = 481
Score = 114 bits (285), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 104/394 (26%), Positives = 167/394 (42%), Gaps = 25/394 (6%)
Query: 9 KQLVNILLNYIKESNDRNEKVLHFYHPAEMKAMLDLDIPEKGLPLQKLIDDCFTTLKYQV 68
+++V+ + Y+ S R +V P ++A L PE + D + V
Sbjct: 16 REMVDYICQYL--STVRERRVTPDVQPGYLRAQLPESAPEDPDSWDSIFGDIERIIMPGV 73
Query: 69 RTGHPMFMNQLSCGLDV-VSMAGEWLIATANTNMFTYEIAPVFILMETVVLEKMRQIIGW 127
M+ L S+ G+ L N FT+ +P +E V++ + +++G
Sbjct: 74 VHWQSPHMHAYYPALTSWPSLLGDMLADAINCLGFTWASSPACTELEMNVMDWLAKMLGL 133
Query: 128 -----------QGGDSILAPGGSISNLYAFLAARH----KMFPTYKEKGLSAIKGQLVMF 172
QGG +L S S L A LAAR +M + + S++ +LV +
Sbjct: 134 PEHFLHHHPSSQGG-GVLQSTVSESTLIALLAARKNKILEMKTSEPDADESSLNARLVAY 192
Query: 173 TSDQCHYSVRSCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTS 232
SDQ H SV + + +P D L L++ + E K +G +P FV T
Sbjct: 193 ASDQAHSSVEKAGLISLVKMKF---LPVDDNFSLRGEALQKAIEEDKQRGLVPVFVCATL 249
Query: 233 GTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPH 292
GTT + AFD + E+ IC + +WLH+DAA+ G L ++R L GIE ADS T+NP
Sbjct: 250 GTTGVCAFDXLSELGPICAREGLWLHIDAAYAGTAFLCPEFRG-FLKGIEYADSFTFNPS 308
Query: 293 KLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKL 352
K M C+ K L S ++++ V D I R KL
Sbjct: 309 KWMMVHFDCTGFWVKDKYKL--QQTFSVNPIYLRHANSGVATDFMHWQIPLSRRFRSVKL 366
Query: 353 WLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMP 386
W R+ G + + + E+A+Y +++ P
Sbjct: 367 WFVIRSFGVKNLQAHVRHGTEMAKYFESLVRNDP 400
>pdb|3F9T|A Chain A, Crystal Structure Of L-tyrosine Decarboxylase Mfna (ec
4.1.1.25) (np_247014.1) From Methanococcus Jannaschii At
2.11 A Resolution
pdb|3F9T|B Chain B, Crystal Structure Of L-tyrosine Decarboxylase Mfna (ec
4.1.1.25) (np_247014.1) From Methanococcus Jannaschii At
2.11 A Resolution
Length = 397
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 79/175 (45%), Gaps = 28/175 (16%)
Query: 232 SGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLL--LSKKYRHPRLT-------GIE 282
+GTT LG D IEE++ I ++ N+++HVDAA+GG ++ L KY+ + G+
Sbjct: 179 AGTTELGTIDNIEELSKIAKENNIYIHVDAAFGGLVIPFLDDKYKKKGVNYKFDFSLGV- 237
Query: 283 RADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYL--FMQDKLYDVRYDTGDKV 340
DS+T +PHK + I FK G + + A YL Q + R G
Sbjct: 238 --DSITIDPHKXGHCPIPSGGILFKDIGYKRYLD-VDAPYLTETRQATILGTRVGFGGAC 294
Query: 341 IQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEP 395
+ R G EG K ++ E Y+ KK+K + F ++EP
Sbjct: 295 T-----------YAVLRYLGREGQRKIVNECXENTLYLYKKLKE--NNFKPVIEP 336
>pdb|2CH1|A Chain A, Structure Of Anopheles Gambiae 3-Hydroxykynurenine
Transaminase
pdb|2CH1|B Chain B, Structure Of Anopheles Gambiae 3-Hydroxykynurenine
Transaminase
pdb|2CH1|C Chain C, Structure Of Anopheles Gambiae 3-Hydroxykynurenine
Transaminase
pdb|2CH1|D Chain D, Structure Of Anopheles Gambiae 3-Hydroxykynurenine
Transaminase
pdb|2CH2|A Chain A, Structure Of The Anopheles Gambiae 3-Hydroxykynurenine
Transaminase In Complex With Inhibitor
pdb|2CH2|B Chain B, Structure Of The Anopheles Gambiae 3-Hydroxykynurenine
Transaminase In Complex With Inhibitor
pdb|2CH2|C Chain C, Structure Of The Anopheles Gambiae 3-Hydroxykynurenine
Transaminase In Complex With Inhibitor
pdb|2CH2|D Chain D, Structure Of The Anopheles Gambiae 3-Hydroxykynurenine
Transaminase In Complex With Inhibitor
Length = 396
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 74/194 (38%), Gaps = 18/194 (9%)
Query: 196 VEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNM 255
+E P D+ P LE L R + P + T G + G P+E + IC +++
Sbjct: 122 IEGPPDR-----PFSLE--TLARAIELHQPKCLFLTHGDSSSGLLQPLEGVGQICHQHDC 174
Query: 256 WLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISC 315
L VDA ++ P D+V K++G + I L +
Sbjct: 175 LLIVDA-------VASLCGVPFYMDKWEIDAVYTGAQKVLGAPPGITPISISPKALDVIR 227
Query: 316 NQMSAEYLFMQDKL----YDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRL 371
N+ + +F D L Y YD + N IF L +EG E QI R
Sbjct: 228 NRRTKSKVFYWDLLLLGNYWGCYDEPKRYHHTVASNLIFALREALAQIAEEGLENQIKRR 287
Query: 372 MELAEYMVKKIKSM 385
+E A+ + + + M
Sbjct: 288 IECAQILYEGLGKM 301
>pdb|3MAF|B Chain B, Crystal Structure Of Stspl (Asymmetric Form)
Length = 518
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 45/204 (22%), Positives = 84/204 (41%), Gaps = 28/204 (13%)
Query: 201 DKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVL----------GAFDPIEEIADIC 250
DK + +L R L+ + D+ + TV+ G DPI EIA +
Sbjct: 210 DKAAQYFGIKLVRTPLDADYRADVAAMREAITPNTVVVAGSAPGYPHGVVDPIPEIAALA 269
Query: 251 QKYNMWLHVDAAWGGGLL-LSKKYRHP------RLTGIERADSVTWNPHKLMGTLLQCST 303
++ + HVDA GG +L +++ +P RL G+ SV+ + HK S
Sbjct: 270 AEHGIGCHVDACLGGFILPWAERLGYPVPPFDFRLEGVT---SVSADTHKYGYGAKGTSV 326
Query: 304 IHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEG 363
I +++ LL ++A++ LY G + W + G+EG
Sbjct: 327 ILYRRPDLLHYQYFIAADW---PGGLYFSPTFAGSRPGALSA-----TAWAAMLSLGEEG 378
Query: 364 FEKQIDRLMELAEYMVKKIKSMPD 387
+ R+++ A+ + ++++P
Sbjct: 379 YLDATRRILQAADRLKAGVRAIPS 402
>pdb|3MBB|A Chain A, Crystal Structure Of Stspl - Apo Form, After Treatment
With Semicarbazide
pdb|3MBB|B Chain B, Crystal Structure Of Stspl - Apo Form, After Treatment
With Semicarbazide
Length = 514
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 45/204 (22%), Positives = 84/204 (41%), Gaps = 28/204 (13%)
Query: 201 DKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVL----------GAFDPIEEIADIC 250
DK + +L R L+ + D+ + TV+ G DPI EIA +
Sbjct: 206 DKAAQYFGIKLVRTPLDADYRADVAAMREAITPNTVVVAGSAPGXPHGVVDPIPEIAALA 265
Query: 251 QKYNMWLHVDAAWGGGLL-LSKKYRHP------RLTGIERADSVTWNPHKLMGTLLQCST 303
++ + HVDA GG +L +++ +P RL G+ SV+ + HK S
Sbjct: 266 AEHGIGCHVDACLGGFILPWAERLGYPVPPFDFRLEGVT---SVSADTHKYGYGAKGTSV 322
Query: 304 IHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEG 363
I +++ LL ++A++ LY G + W + G+EG
Sbjct: 323 ILYRRPDLLHYQYFIAADW---PGGLYFSPTFAGSRPGALSA-----TAWAAMLSLGEEG 374
Query: 364 FEKQIDRLMELAEYMVKKIKSMPD 387
+ R+++ A+ + ++++P
Sbjct: 375 YLDATRRILQAADRLKAGVRAIPS 398
>pdb|1ECX|A Chain A, Nifs-Like Protein
pdb|1ECX|B Chain B, Nifs-Like Protein
Length = 384
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 8/71 (11%)
Query: 198 VPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYN--M 255
VP D RG + ELE+LV E F V+ + +G P+E++ I +K N
Sbjct: 119 VPVDSRGVVKLEELEKLVDED------TFLVSIMAANNEVGTIQPVEDVTRIVKKKNKET 172
Query: 256 WLHVDAAWGGG 266
+HVDA G
Sbjct: 173 LVHVDAVQTIG 183
>pdb|1EG5|A Chain A, Nifs-like Protein
pdb|1EG5|B Chain B, Nifs-like Protein
Length = 384
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 8/66 (12%)
Query: 198 VPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYN--M 255
VP D RG + ELE+LV E F V+ + +G P+E++ I +K N
Sbjct: 119 VPVDSRGVVKLEELEKLVDED------TFLVSIXAANNEVGTIQPVEDVTRIVKKKNKET 172
Query: 256 WLHVDA 261
+HVDA
Sbjct: 173 LVHVDA 178
>pdb|2VYC|A Chain A, Crystal Structure Of Acid Induced Arginine Decarboxylase
From E. Coli
pdb|2VYC|B Chain B, Crystal Structure Of Acid Induced Arginine Decarboxylase
From E. Coli
pdb|2VYC|C Chain C, Crystal Structure Of Acid Induced Arginine Decarboxylase
From E. Coli
pdb|2VYC|D Chain D, Crystal Structure Of Acid Induced Arginine Decarboxylase
From E. Coli
pdb|2VYC|E Chain E, Crystal Structure Of Acid Induced Arginine Decarboxylase
From E. Coli
pdb|2VYC|F Chain F, Crystal Structure Of Acid Induced Arginine Decarboxylase
From E. Coli
pdb|2VYC|G Chain G, Crystal Structure Of Acid Induced Arginine Decarboxylase
From E. Coli
pdb|2VYC|H Chain H, Crystal Structure Of Acid Induced Arginine Decarboxylase
From E. Coli
pdb|2VYC|I Chain I, Crystal Structure Of Acid Induced Arginine Decarboxylase
From E. Coli
pdb|2VYC|J Chain J, Crystal Structure Of Acid Induced Arginine Decarboxylase
From E. Coli
Length = 755
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 65/176 (36%), Gaps = 28/176 (15%)
Query: 170 VMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSDKR----GRLIPSELERLVLERK------ 219
V+ CH S+ + G VPS R G + P E++ L++K
Sbjct: 247 VVVVDRNCHKSIEQGLMLTG--AKPVYMVPSRNRYGIIGPIYPQEMQPETLQKKISESPL 304
Query: 220 ---AKGDIPFF---VNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKY 273
G P + NCT A +E D+ +K + LH D AW G + Y
Sbjct: 305 TKDKAGQKPSYCVVTNCTYDGVCYNA----KEAQDLLEKTSDRLHFDEAWYGYARFNPIY 360
Query: 274 RHPRLTGIERADS------VTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYL 323
E D T + H L+ L Q S IH ++ I+ ++ + Y+
Sbjct: 361 ADHYAMRGEPGDHNGPTVFATHSTHXLLNALSQASYIHVREGRGAINFSRFNQAYM 416
>pdb|3MAU|A Chain A, Crystal Structure Of Stspl In Complex With
Phosphoethanolamine
pdb|3MAU|B Chain B, Crystal Structure Of Stspl In Complex With
Phosphoethanolamine
pdb|3MAU|C Chain C, Crystal Structure Of Stspl In Complex With
Phosphoethanolamine
pdb|3MAU|D Chain D, Crystal Structure Of Stspl In Complex With
Phosphoethanolamine
Length = 514
Score = 37.0 bits (84), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 44/204 (21%), Positives = 83/204 (40%), Gaps = 28/204 (13%)
Query: 201 DKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVL----------GAFDPIEEIADIC 250
DK + +L R L+ + D+ + TV+ G DPI EIA +
Sbjct: 206 DKAAQYFGIKLVRTPLDADYRADVAAMREAITPNTVVVAGSAPGYPHGVVDPIPEIAALA 265
Query: 251 QKYNMWLHVDAAWGGGLL-LSKKYRHP------RLTGIERADSVTWNPHKLMGTLLQCST 303
++ + HVDA GG +L +++ +P RL G+ SV+ + H S
Sbjct: 266 AEHGIGCHVDACLGGFILPWAERLGYPVPPFDFRLEGVT---SVSADTHAYGYGAKGTSV 322
Query: 304 IHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEG 363
I +++ LL ++A++ LY G + W + G+EG
Sbjct: 323 ILYRRPDLLHYQYFIAADW---PGGLYFSPTFAGSRPGALSA-----TAWAAMLSLGEEG 374
Query: 364 FEKQIDRLMELAEYMVKKIKSMPD 387
+ R+++ A+ + ++++P
Sbjct: 375 YLDATRRILQAADRLKAGVRAIPS 398
>pdb|3MAF|A Chain A, Crystal Structure Of Stspl (Asymmetric Form)
Length = 518
Score = 36.6 bits (83), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 44/204 (21%), Positives = 83/204 (40%), Gaps = 28/204 (13%)
Query: 201 DKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVL----------GAFDPIEEIADIC 250
DK + +L R L+ + D+ + TV+ G DPI EIA +
Sbjct: 210 DKAAQYFGIKLVRTPLDADYRADVAAMREAITPNTVVVAGSAPGYPHGVVDPIPEIAALA 269
Query: 251 QKYNMWLHVDAAWGGGLL-LSKKYRHP------RLTGIERADSVTWNPHKLMGTLLQCST 303
++ + HVDA GG +L +++ +P RL G+ SV+ + H S
Sbjct: 270 AEHGIGCHVDACLGGFILPWAERLGYPVPPFDFRLEGVT---SVSADTHXYGYGAKGTSV 326
Query: 304 IHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEG 363
I +++ LL ++A++ LY G + W + G+EG
Sbjct: 327 ILYRRPDLLHYQYFIAADW---PGGLYFSPTFAGSRPGALSA-----TAWAAMLSLGEEG 378
Query: 364 FEKQIDRLMELAEYMVKKIKSMPD 387
+ R+++ A+ + ++++P
Sbjct: 379 YLDATRRILQAADRLKAGVRAIPS 402
>pdb|3MAD|A Chain A, Crystal Structure Of Stspl (Symmetric Form)
pdb|3MAD|B Chain B, Crystal Structure Of Stspl (Symmetric Form)
Length = 514
Score = 36.6 bits (83), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 44/204 (21%), Positives = 83/204 (40%), Gaps = 28/204 (13%)
Query: 201 DKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVL----------GAFDPIEEIADIC 250
DK + +L R L+ + D+ + TV+ G DPI EIA +
Sbjct: 206 DKAAQYFGIKLVRTPLDADYRADVAAMREAITPNTVVVAGSAPGYPHGVVDPIPEIAALA 265
Query: 251 QKYNMWLHVDAAWGGGLL-LSKKYRHP------RLTGIERADSVTWNPHKLMGTLLQCST 303
++ + HVDA GG +L +++ +P RL G+ SV+ + H S
Sbjct: 266 AEHGIGCHVDACLGGFILPWAERLGYPVPPFDFRLEGVT---SVSADTHXYGYGAKGTSV 322
Query: 304 IHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEG 363
I +++ LL ++A++ LY G + W + G+EG
Sbjct: 323 ILYRRPDLLHYQYFIAADW---PGGLYFSPTFAGSRPGALSA-----TAWAAMLSLGEEG 374
Query: 364 FEKQIDRLMELAEYMVKKIKSMPD 387
+ R+++ A+ + ++++P
Sbjct: 375 YLDATRRILQAADRLKAGVRAIPS 398
>pdb|1E5X|A Chain A, Structure Of Threonine Synthase From Arabidopsis Thaliana
pdb|1E5X|B Chain B, Structure Of Threonine Synthase From Arabidopsis Thaliana
Length = 486
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 5/50 (10%)
Query: 113 METVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGL 162
+T +E ++Q WQ D ++ PGG++ N+YAF +K F +E GL
Sbjct: 271 QKTAAIEILQQF-DWQVPDWVIVPGGNLGNIYAF----YKGFKXCQELGL 315
>pdb|2C2B|A Chain A, Crystallographic Structure Of Arabidopsis Thaliana
Threonine Synthase Complexed With Pyridoxal Phosphate
And S-Adenosylmethionine
pdb|2C2B|B Chain B, Crystallographic Structure Of Arabidopsis Thaliana
Threonine Synthase Complexed With Pyridoxal Phosphate
And S-Adenosylmethionine
pdb|2C2B|C Chain C, Crystallographic Structure Of Arabidopsis Thaliana
Threonine Synthase Complexed With Pyridoxal Phosphate
And S-Adenosylmethionine
pdb|2C2B|D Chain D, Crystallographic Structure Of Arabidopsis Thaliana
Threonine Synthase Complexed With Pyridoxal Phosphate
And S-Adenosylmethionine
pdb|2C2B|E Chain E, Crystallographic Structure Of Arabidopsis Thaliana
Threonine Synthase Complexed With Pyridoxal Phosphate
And S-Adenosylmethionine
pdb|2C2B|F Chain F, Crystallographic Structure Of Arabidopsis Thaliana
Threonine Synthase Complexed With Pyridoxal Phosphate
And S-Adenosylmethionine
pdb|2C2G|A Chain A, Crystal Structure Of Threonine Synthase From Arabidopsis
Thaliana In Complex With Its Cofactor Pyridoxal
Phosphate
pdb|2C2G|B Chain B, Crystal Structure Of Threonine Synthase From Arabidopsis
Thaliana In Complex With Its Cofactor Pyridoxal
Phosphate
Length = 486
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 5/49 (10%)
Query: 114 ETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGL 162
+T +E ++Q WQ D ++ PGG++ N+YAF +K F +E GL
Sbjct: 272 KTAAIEILQQF-DWQVPDWVIVPGGNLGNIYAF----YKGFKMCQELGL 315
>pdb|1YAF|A Chain A, Structure Of Tena From Bacillus Subtilis
pdb|1YAF|B Chain B, Structure Of Tena From Bacillus Subtilis
pdb|1YAF|C Chain C, Structure Of Tena From Bacillus Subtilis
pdb|1YAF|D Chain D, Structure Of Tena From Bacillus Subtilis
pdb|1YAK|A Chain A, Complex Of Bacillus Subtilis Tena With 4-Amino-2-Methyl-5-
Hydroxymethylpyrimidine
pdb|1YAK|B Chain B, Complex Of Bacillus Subtilis Tena With 4-Amino-2-Methyl-5-
Hydroxymethylpyrimidine
pdb|1YAK|C Chain C, Complex Of Bacillus Subtilis Tena With 4-Amino-2-Methyl-5-
Hydroxymethylpyrimidine
pdb|1YAK|D Chain D, Complex Of Bacillus Subtilis Tena With 4-Amino-2-Methyl-5-
Hydroxymethylpyrimidine
Length = 263
Score = 32.7 bits (73), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 42/83 (50%), Gaps = 8/83 (9%)
Query: 330 YDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGF----EKQIDRLMELAEYMVKKIKSM 385
Y + Y+ G+K++ C + I++ W+ G + F E+QI+R ELAE +++++
Sbjct: 163 YWLYYEVGEKLLHCDPGHPIYQKWIG--TYGGDWFRQQVEEQINRFDELAENSTEEVRAK 220
Query: 386 PDKFYLILEPEMVNVSFWYLPTR 408
+ ++I FW + R
Sbjct: 221 MKENFVI--SSYYEYQFWGMAYR 241
>pdb|2QCX|A Chain A, Crystal Structure Of Bacillus Subtilis Tena Y112f Mutant
Complexed With Formyl Aminomethyl Pyrimidine
pdb|2QCX|B Chain B, Crystal Structure Of Bacillus Subtilis Tena Y112f Mutant
Complexed With Formyl Aminomethyl Pyrimidine
Length = 263
Score = 32.3 bits (72), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 42/83 (50%), Gaps = 8/83 (9%)
Query: 330 YDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGF----EKQIDRLMELAEYMVKKIKSM 385
Y + Y+ G+K++ C + I++ W+ G + F E+QI+R ELAE +++++
Sbjct: 163 YWLYYEVGEKLLHCDPGHPIYQKWIG--TYGGDWFRQQVEEQINRFDELAENSTEEVRAK 220
Query: 386 PDKFYLILEPEMVNVSFWYLPTR 408
+ ++I FW + R
Sbjct: 221 MKENFVI--SSYYEYQFWGMAYR 241
>pdb|1TO9|A Chain A, Crystal Structure Of Thi-4 Protein From Bacillus Subtilis
Length = 260
Score = 32.3 bits (72), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 40/78 (51%), Gaps = 8/78 (10%)
Query: 330 YDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGF----EKQIDRLMELAEYMVKKIKSM 385
Y + Y+ G+K++ C + I++ W+ G + F E+QI+R ELAE +++++
Sbjct: 160 YWLYYEVGEKLLHCDPGHPIYQKWIG--TYGGDWFRQQVEEQINRFDELAENSTEEVRAK 217
Query: 386 PDKFYLILEPEMVNVSFW 403
+ ++I FW
Sbjct: 218 XKENFVI--SSYYEYQFW 233
>pdb|1TYH|A Chain A, Crystal Structure Of Transcriptional Activator Tena From
Bacillus Subtilis
pdb|1TYH|B Chain B, Crystal Structure Of Transcriptional Activator Tena From
Bacillus Subtilis
pdb|1TYH|D Chain D, Crystal Structure Of Transcriptional Activator Tena From
Bacillus Subtilis
pdb|1TYH|E Chain E, Crystal Structure Of Transcriptional Activator Tena From
Bacillus Subtilis
Length = 248
Score = 32.3 bits (72), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 40/78 (51%), Gaps = 8/78 (10%)
Query: 330 YDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGF----EKQIDRLMELAEYMVKKIKSM 385
Y + Y+ G+K++ C + I++ W+ G + F E+QI+R ELAE +++++
Sbjct: 138 YWLYYEVGEKLLHCDPGHPIYQKWIG--TYGGDWFRQQVEEQINRFDELAENSTEEVRAK 195
Query: 386 PDKFYLILEPEMVNVSFW 403
+ ++I FW
Sbjct: 196 XKENFVI--SSYYEYQFW 211
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 50/123 (40%), Gaps = 15/123 (12%)
Query: 301 CSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKG 360
S +H K ++ E M D++ V K+IQ G+ +IF+ ++ R
Sbjct: 170 LSVLHKKNKLTVLHITHDQTEARIMADRIAVV---MDGKLIQVGKPEEIFEKPVEGRVAS 226
Query: 361 DEGFEKQIDRLMELAEYMVKKIK------------SMPDKFYLILEPEMVNVSFWYLPTR 408
GFE + + AE + +I+ + D+ Y L PE + +S +
Sbjct: 227 FVGFENVLKGRVISAEQGLLRIRVGEVVIDAAGDMEVGDQVYAFLRPENIALSKSSTQSS 286
Query: 409 VRN 411
+RN
Sbjct: 287 IRN 289
>pdb|1V72|A Chain A, Crystal Structure Of Phenylserine Aldolase From
Pseudomonas Putida
Length = 356
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 6/82 (7%)
Query: 218 RKAKGDI----PFFVNCTSGTTV--LGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSK 271
R+ GD+ P V+ T T V + D IE I D+C+ ++ LH+D + L+S
Sbjct: 131 REKVGDVHTTQPACVSITQATEVGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSL 190
Query: 272 KYRHPRLTGIERADSVTWNPHK 293
+T D++++ K
Sbjct: 191 GCSPAEMTWKAGVDALSFGATK 212
>pdb|1XQU|A Chain A, Hit Family Hydrolase From Clostridium Thermocellum Cth-393
pdb|1XQU|B Chain B, Hit Family Hydrolase From Clostridium Thermocellum Cth-393
Length = 147
Score = 29.6 bits (65), Expect = 3.8, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Query: 19 IKESNDRNEKVLHFYHPAEMKAMLDLDIPEKGLPLQKLIDDC 60
+KE N+ N ++L H A K DL I EKG +LI +C
Sbjct: 83 VKEINESNAQILIDIHKAANKVAEDLGIAEKGY---RLITNC 121
>pdb|1CG3|A Chain A, Structure Of The Mutant (R143l) Of Adenylosuccinate
Synthetase From E. Coli Complexed With Hadacidin, Gdp,
6-Phosphoryl-Imp, And Mg2+
Length = 431
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
Query: 347 NDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVK 380
N++ L QW GDEG K +D L E A+Y+V+
Sbjct: 2 NNVVVLGTQW---GDEGKGKIVDLLTERAKYVVR 32
>pdb|1CG4|A Chain A, Structure Of The Mutant (R303l) Of Adenylosuccinate
Synthetase From E. Coli Complexed With, Gdp,
6-Phosphoryl-Imp, And Mg2+
Length = 431
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
Query: 347 NDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVK 380
N++ L QW GDEG K +D L E A+Y+V+
Sbjct: 2 NNVVVLGTQW---GDEGKGKIVDLLTERAKYVVR 32
>pdb|1HON|A Chain A, Structure Of Guanine Nucleotide (Gppcp) Complex Of
Adenylosuccinate Synthetase From Escherichia Coli At Ph
6.5 And 25 Degree Celsius
pdb|1HON|B Chain B, Structure Of Guanine Nucleotide (Gppcp) Complex Of
Adenylosuccinate Synthetase From Escherichia Coli At Ph
6.5 And 25 Degree Celsius
pdb|1HOP|A Chain A, Structure Of Guanine Nucleotide (Gppcp) Complex Of
Adenylosuccinate Synthetase From Escherichia Coli At Ph
6.5 And 25 Degrees Celsius
pdb|1HOP|B Chain B, Structure Of Guanine Nucleotide (Gppcp) Complex Of
Adenylosuccinate Synthetase From Escherichia Coli At Ph
6.5 And 25 Degrees Celsius
Length = 431
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
Query: 347 NDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVK 380
N++ L QW GDEG K +D L E A+Y+V+
Sbjct: 2 NNVVVLGTQW---GDEGKGKIVDLLTERAKYVVR 32
>pdb|1KJX|A Chain A, Imp Complex Of E. Coli Adenylosuccinate Synthetase
pdb|1KKB|A Chain A, Complex Of Escherichia Coli Adenylosuccinate Synthetase
With Imp And Hadacidin
pdb|1KKF|A Chain A, Complex Of E. Coli Adenylosuccinate Synthetase With Imp,
Hadacidin, Pyrophosphate, And Mg
Length = 432
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
Query: 347 NDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVK 380
N++ L QW GDEG K +D L E A+Y+V+
Sbjct: 3 NNVVVLGTQW---GDEGKGKIVDLLTERAKYVVR 33
>pdb|1CG0|A Chain A, Structure Of Adenylosuccinate Synthetase From E. Coli
Complexed With Hadacidin, Gdp, 6-Phosphoryl-Imp, And
Mg2+
pdb|1CH8|A Chain A, Structure Of Adenylosuccinate Synthetase From E. Coli
Complexed With A Stringent Effector, Ppg2':3'p
pdb|1QF4|A Chain A, Design, Synthesis, And X-Ray Crystal Structure Of An
Enzyme Bound Bisubstrate Hybrid Inhibitor Of
Adenylosuccinate Synthetase
pdb|1QF5|A Chain A, Design, Synthesis, And X-Ray Crystal Structure Of An
Enzyme Bound Bisubstrate Hybrid Inhibitor Of
Adenylosuccinate Synthetase
pdb|1CIB|A Chain A, Structure Of Adenylosuccinate Synthetase From E. Coli
Complexed With Gdp, Imp, Hadacidin, And No3
pdb|2GCQ|A Chain A, Fully Ligated E.Coli Adenylosuccinate Synthetase With Gtp,
2'-Deoxy- Imp And Hadacidin
pdb|1SON|A Chain A, Adenylosuccinate Synthetase In Complex With The Natural
Feedback Inhibitor Amp
pdb|1SOO|A Chain A, Adenylosuccinate Synthetase Inhibited By Hydantocidin
5'-Monophosphate
pdb|1ADE|A Chain A, Structure Of Adenylosuccinate Synthetase Ph 7 At 25
Degrees Celsius
pdb|1ADE|B Chain B, Structure Of Adenylosuccinate Synthetase Ph 7 At 25
Degrees Celsius
pdb|1ADI|A Chain A, Structure Of Adenylosuccinate Synthetase At Ph 6.5 And 25
Degrees Celsius
pdb|1ADI|B Chain B, Structure Of Adenylosuccinate Synthetase At Ph 6.5 And 25
Degrees Celsius
pdb|1HOO|A Chain A, Structure Of Guanine Nucleotide (Gppcp) Complex Of
Adenylosuccinate Synthetase From E. Coli At Ph 6.5 And
25 Degrees Celsius
pdb|1HOO|B Chain B, Structure Of Guanine Nucleotide (Gppcp) Complex Of
Adenylosuccinate Synthetase From E. Coli At Ph 6.5 And
25 Degrees Celsius
pdb|1GIM|A Chain A, Crystal Structure Of Adenylosuccinate Synthetase From
Escherichia Coli Complexed With Gdp, Imp, Hadacidin,
No3-, And Mg2+. Data Collected At 100k (Ph 6.5)
pdb|1GIN|A Chain A, Crystal Structure Of Adenylosuccinate Synthetase From
Escherichia Coli Complexed With Gdp, Imp, Hadacidin,
No3-, And Mg2+. Data Collected At 298k (Ph 6.5).
pdb|1KSZ|A Chain A, Entrapment Of 6-Thiophosphoryl-Imp In The Active Site Of
Crystalline Adenylosuccinate Synthetase From Escherichia
Coli, Data Collected At 298k
pdb|1NHT|A Chain A, Entrapment Of 6-Thiophosphoryl-Imp In The Active Site Of
Crystalline Adenylosuccinate Synthetase From Escherichia
Coli Data Collected At 100k
pdb|1JUY|A Chain A, Refined Crystal Structure Of Adenylosuccinate Synthetase
From Escherichia Coli Complexed With Hydantocidin 5'-
Phosphate Gdp, Hpo4(2-), Mg2+, And Hadacidin
Length = 431
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
Query: 347 NDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVK 380
N++ L QW GDEG K +D L E A+Y+V+
Sbjct: 2 NNVVVLGTQW---GDEGKGKIVDLLTERAKYVVR 32
>pdb|1CG1|A Chain A, Structure Of The Mutant (K16q) Of Adenylosuccinate
Synthetase From E. Coli Complexed With Hadacidin, Gdp,
6-Phosphoryl-Imp, And Mg2+
Length = 431
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
Query: 347 NDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVK 380
N++ L QW GDEG K +D L E A+Y+V+
Sbjct: 2 NNVVVLGTQW---GDEGQGKIVDLLTERAKYVVR 32
>pdb|3MC6|C Chain C, Crystal Structure Of Scdpl1
Length = 497
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 238 GAFDPIEEIADICQKYNMWLHVDAAWG 264
G D IE + I QKY + LHVD+ G
Sbjct: 220 GIADDIEGLGKIAQKYKLPLHVDSCLG 246
>pdb|3MC6|A Chain A, Crystal Structure Of Scdpl1
Length = 497
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 238 GAFDPIEEIADICQKYNMWLHVDAAWG 264
G D IE + I QKY + LHVD+ G
Sbjct: 220 GIADDIEGLGKIAQKYKLPLHVDSCLG 246
>pdb|3AMK|A Chain A, Structure Of The Starch Branching Enzyme I (Bei) From
Oryza Sativa L
Length = 702
Score = 28.5 bits (62), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 21/41 (51%)
Query: 216 LERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMW 256
LE +KG + F +N G T+ + P + A + ++N W
Sbjct: 48 LEEFSKGYLKFGINTVDGATIYREWAPAAQEAQLIGEFNNW 88
>pdb|3AML|A Chain A, Structure Of The Starch Branching Enzyme I (Bei) From
Oryza Sativa L
Length = 755
Score = 28.5 bits (62), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 21/41 (51%)
Query: 216 LERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMW 256
LE +KG + F +N G T+ + P + A + ++N W
Sbjct: 48 LEEFSKGYLKFGINTVDGATIYREWAPAAQEAQLIGEFNNW 88
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.139 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,572,006
Number of Sequences: 62578
Number of extensions: 615192
Number of successful extensions: 1387
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 1320
Number of HSP's gapped (non-prelim): 40
length of query: 480
length of database: 14,973,337
effective HSP length: 103
effective length of query: 377
effective length of database: 8,527,803
effective search space: 3214981731
effective search space used: 3214981731
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (25.0 bits)