RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12303
(480 letters)
>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET:
LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*
Length = 504
Score = 594 bits (1533), Expect = 0.0
Identities = 273/484 (56%), Positives = 363/484 (75%), Gaps = 9/484 (1%)
Query: 4 TETFLKQLVNILLNYIKESNDRNEKVLHFYHPAEMKAML---DLDIPEKGLPLQKLIDDC 60
T FL ++V+ILLNY++++ DR+ KVL F+HP ++ + +L++ + L++++ DC
Sbjct: 21 TVQFLLEVVDILLNYVRKTFDRSTKVLDFHHPHQLLEGMEGFNLELSDHPESLEQILVDC 80
Query: 61 FTTLKYQVRTGHPMFMNQLSCGLDVVSMAGEWLIATANTNMFTYEIAPVFILMETVVLEK 120
TLKY VRTGHP F NQLS GLD++ +AGEWL +TANTNMFTYEIAPVF+LME + L+K
Sbjct: 81 RDTLKYGVRTGHPRFFNQLSTGLDIIGLAGEWLTSTANTNMFTYEIAPVFVLMEQITLKK 140
Query: 121 MRQIIGW--QGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCH 178
MR+I+GW + GD I +PGG+ISN+Y+ +AAR+K FP K KG++A+ +LV+FTS+Q H
Sbjct: 141 MREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAV-PKLVLFTSEQSH 199
Query: 179 YSVRSCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLG 238
YS++ A G GTDN + + ++RG++IP++ E +LE K KG +PF+VN T+GTTV G
Sbjct: 200 YSIKKAGAALGFGTDNVILIKCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYG 259
Query: 239 AFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTL 298
AFDPI+EIADIC+KYN+WLHVDAAWGGGLL+S+K+RH +L GIERA+SVTWNPHK+MG L
Sbjct: 260 AFDPIQEIADICEKYNLWLHVDAAWGGGLLMSRKHRH-KLNGIERANSVTWNPHKMMGVL 318
Query: 299 LQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRA 358
LQCS I K+ G+L CNQM A YLF DK YDV YDTGDK IQCGRH DIFK WL W+A
Sbjct: 319 LQCSAILVKEKGILQGCNQMCAGYLFQPDKQYDVSYDTGDKAIQCGRHVDIFKFWLMWKA 378
Query: 359 KGDEGFEKQIDRLMELAEYMVKKIKSMPD-KFYLILEPEMVNVSFWYLPTRVRNMPH-EK 416
KG GFE QI++ +ELAEY+ KIK+ + + EPE NV FWY+P +R +P +
Sbjct: 379 KGTVGFENQINKCLELAEYLYAKIKNREEFEMVFNGEPEHTNVCFWYIPQSLRGVPDSPQ 438
Query: 417 RLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRL 476
R L ++ P +K MM++GT MVGYQP D NFFR +IS+ A T+ DIDFL+ E++RL
Sbjct: 439 RREKLHKVAPKIKALMMESGTTMVGYQPQGDKANFFRMVISNPAATQSDIDFLIEEIERL 498
Query: 477 GHDL 480
G DL
Sbjct: 499 GQDL 502
>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate,
alternative splicing, pyridoxal phosphate (PLP),
structural genomics consortium (SGC); HET: PLP; 1.6A
{Homo sapiens}
Length = 515
Score = 592 bits (1527), Expect = 0.0
Identities = 226/481 (46%), Positives = 328/481 (68%), Gaps = 6/481 (1%)
Query: 3 TTETFLKQLVNILLNYI-KESNDRNEKVLHFYHPAEMKAMLDLDIPEKGLPLQKLIDDCF 61
E L+ + ++++ ++ ++KV + P E+K +LDL++ +G +++++ C
Sbjct: 38 AVEALLRAVFGVVVDEAIQKGTSVSQKVCEWKEPEELKQLLDLELRSQGESQKQILERCR 97
Query: 62 TTLKYQVRTGHPMFMNQLSCGLDVVSMAGEWLIATANTNMFTYEIAPVFILMETVVLEKM 121
++Y V+TGHP F NQL GLD ++AG + + NT+ +TYEIAPVF+LME VL K+
Sbjct: 98 AVIRYSVKTGHPRFFNQLFSGLDPHALAGRIITESLNTSQYTYEIAPVFVLMEEEVLRKL 157
Query: 122 RQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSV 181
R ++GW GD I PGGSISN+YA AR++ +P K++GL + L +FTS +CHYS+
Sbjct: 158 RALVGWSSGDGIFCPGGSISNMYAVNLARYQRYPDCKQRGLRTL-PPLALFTSKECHYSI 216
Query: 182 RSCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFD 241
+ AA GLGTD+ V +D+RG+++P +LER + +A+G +PF V+ TSGTTVLGAFD
Sbjct: 217 QKGAAFLGLGTDSVRVVKADERGKMVPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFD 276
Query: 242 PIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQC 301
P+E IAD+CQ++ +WLHVDAAWGG +LLS+ +RH L GI+RADSV WNPHKL+ LQC
Sbjct: 277 PLEAIADVCQRHGLWLHVDAAWGGSVLLSQTHRH-LLDGIQRADSVAWNPHKLLAAGLQC 335
Query: 302 STIHFKQ-DGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKG 360
S + + LL C+ A YLF QDK YDV DTGDKV+QCGR D KLWL W+A+G
Sbjct: 336 SALLLQDTSNLLKRCHGSQASYLFQQDKFYDVALDTGDKVVQCGRRVDCLKLWLMWKAQG 395
Query: 361 DEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNMPH-EKRLN 419
D+G E++ID+ LA Y+V+++K F L++EPE VNV FW++P +R
Sbjct: 396 DQGLERRIDQAFVLARYLVEEMKKREG-FELVMEPEFVNVCFWFVPPSLRGKQESPDYHE 454
Query: 420 ILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD 479
L ++ P+LK RM++ G+MM+GYQP NFFR +++++A+T D+DFLL E++RLG D
Sbjct: 455 RLSKVAPVLKERMVKEGSMMIGYQPHGTRGNFFRVVVANSALTCADMDFLLNELERLGQD 514
Query: 480 L 480
L
Sbjct: 515 L 515
>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate
decarboxylase; structural genomics, APC91511.1,
glutamate decarboxylase; HET: MSE; 1.81A {Vibrio
parahaemolyticus}
Length = 497
Score = 538 bits (1387), Expect = 0.0
Identities = 114/481 (23%), Positives = 216/481 (44%), Gaps = 26/481 (5%)
Query: 8 LKQLVNILLNYIKESNDRNEKVLHFYHPAEMKAMLD-LDIPEKGLPLQKLIDDCFTT-LK 65
+++ + +K ++ P ++ ++ +D+ K PL+ +IDD K
Sbjct: 34 FASVMSHTTSAMKSVFEQVNAPYSGMDPKALEDAINAVDLDNKNAPLKSVIDDVAELVAK 93
Query: 66 YQVRTGHPMFMNQLSCGLDVVSMAGEWLIATANTNMFTYEIAPVFILMETVVLEKMRQII 125
+ T HP + L + ++A E +IA N +M +++ A +E V+ +
Sbjct: 94 NAIFTQHPDCIAHLHTPPLMPAVAAEAMIAALNQSMDSWDQASSATYVEQKVVNWLCDKY 153
Query: 126 GW-QGGDSILAPGGSISNLYAFLAARHKMFPTYKEK-----GLSAIKGQLVMFTSDQCHY 179
+ D I GG+ SN + AR + GL +L + S + H+
Sbjct: 154 DLSEKADGIFTSGGTQSNQMGLMLARDWIADKLSGHSIQKLGLPDYADKLRIVCSKKSHF 213
Query: 180 SVRSCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGA 239
+V+ A+ GLG + V ++ G + ++L+ ++ + KA+G IPF + T+GTT GA
Sbjct: 214 TVQKSASWMGLGEKAVMTVDANADGTMDITKLDEVIAQAKAEGLIPFAIVGTAGTTDHGA 273
Query: 240 FDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLL 299
D ++ IAD+ K++MW+HVD A+GG L+LS ++ RL G+ERA S++ + HKL +
Sbjct: 274 IDDLDFIADMAVKHDMWMHVDGAYGGALILS-SHKS-RLKGVERAHSISVDFHKLFYQTI 331
Query: 300 QCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAK 359
C + A+YL ++ +D + DK I + D K+++ +
Sbjct: 332 SCGALLVNDKSNFKFLLH-HADYL---NREHDELPNLVDKSIATTKRFDALKVFMTMQNV 387
Query: 360 GDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNMPHEKRLN 419
G + D L+ + I++ F L+ EP + V F L+
Sbjct: 388 GPKALGDMYDHLLAQTLEVADMIRTNDQ-FELLAEPSLSTVLFRATHE-------TADLD 439
Query: 420 ILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHD 479
E+ L+ + G ++G ++ + I + +T D + LL++++ L +
Sbjct: 440 ---ELNKALRLEALTRGIAVLGETIVDG-KTALKFTILNPCLTTSDFESLLSKINMLAVE 495
Query: 480 L 480
L
Sbjct: 496 L 496
>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo
sapiens}
Length = 481
Score = 465 bits (1198), Expect = e-161
Identities = 111/491 (22%), Positives = 184/491 (37%), Gaps = 39/491 (7%)
Query: 5 ETFLKQLVNILLNYIKESNDRNEKVLHFYHPAEMKAMLDLDIPEKGLPLQKLIDDCFTTL 64
+++V+ + Y+ R +V P ++A L PE + D +
Sbjct: 12 RERGREMVDYICQYLS--TVRERRVTPDVQPGYLRAQLPESAPEDPDSWDSIFGDIERII 69
Query: 65 -KYQVRTGHPMFMNQLSCGLDVVSMAGEWLIATANTNMFTYEIAPVFILMETVVLEKMRQ 123
V P S+ G+ L N FT+ +P +E V++ + +
Sbjct: 70 MPGVVHWQSPHMHAYYPALTSWPSLLGDMLADAINCLGFTWASSPACTELEMNVMDWLAK 129
Query: 124 IIGW----------QGGDSILAPGGSISNLYAFLAARHKMFPTYKEK----GLSAIKGQL 169
++G G +L S S L A LAAR K S++ +L
Sbjct: 130 MLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALLAARKNKILEMKTSEPDADESSLNARL 189
Query: 170 VMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVN 229
V + SDQ H SV + + +P D L L++ + E K +G +P FV
Sbjct: 190 VAYASDQAHSSVEKAGLISLV---KMKFLPVDDNFSLRGEALQKAIEEDKQRGLVPVFVC 246
Query: 230 CTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTW 289
T GTT + AFD + E+ IC + +WLH+DAA+ G L ++R L GIE ADS T+
Sbjct: 247 ATLGTTGVCAFDCLSELGPICAREGLWLHIDAAYAGTAFLCPEFRG-FLKGIEYADSFTF 305
Query: 290 NPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDI 349
NP K M C+ K L ++ YL + + I R
Sbjct: 306 NPSKWMMVHFDCTGFWVKDKYKLQQTFSVNPIYLRHANSGVATDF--MHWQIPLSRRFRS 363
Query: 350 FKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRV 409
KLW R+ G + + + E+A+Y +++ P F + + + V F
Sbjct: 364 VKLWFVIRSFGVKNLQAHVRHGTEMAKYFESLVRNDPS-FEIPAKRHLGLVVFRLKGP-- 420
Query: 410 RNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFL 469
+T + + +AG + + + D R ++S T DI
Sbjct: 421 ------------NSLTENVLKEIAKAGRLFLIPATIQDKL-IIRFTVTSQFTTRDDILRD 467
Query: 470 LTEMDRLGHDL 480
+ +
Sbjct: 468 WNLIRDAATLI 478
>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin;
HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB:
1js6_A* 3rch_A* 3rbl_A 3rbf_A*
Length = 486
Score = 458 bits (1181), Expect = e-159
Identities = 111/488 (22%), Positives = 196/488 (40%), Gaps = 36/488 (7%)
Query: 7 FLKQLVNILLNYIKESNDRNEKVLHFYHPAEMKAMLDLDIPEKGLPLQKLIDDCFTTLKY 66
K++V+ + +Y++ R +V P ++ ++ P++ + ++ D +
Sbjct: 9 RGKEMVDYMADYLEGIEGR--QVYPDVQPGYLRPLIPATAPQEPDTFEDILQDVEKIIMP 66
Query: 67 QVRT-GHPMFMNQLSCGLDVVSMAGEWLIATANTNMFTYEIAPVFILMETVVLEKMRQII 125
V P F +M + L F++ +P +ETV+++ + +++
Sbjct: 67 GVTHWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSWAASPACTELETVMMDWLGKML 126
Query: 126 GW---------QGGDSILAPGGSISNLYAFLAARHKMFPTYKEKG----LSAIKGQLVMF 172
G ++ S + L A LAAR K+ + A+ +LV +
Sbjct: 127 QLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAY 186
Query: 173 TSDQCHYSVRSCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTS 232
SDQ H SV + G+ +PSD + + S L+ + KA G IPFFV T
Sbjct: 187 ASDQAHSSVERAGLIGGV---KLKAIPSDGKFAMRASALQEALERDKAAGLIPFFVVATL 243
Query: 233 GTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPH 292
GTT +FD + E+ IC + ++WLHVDAA+ G + ++RH L G+E ADS +NPH
Sbjct: 244 GTTSCCSFDNLLEVGPICHEEDIWLHVDAAYAGSAFICPEFRH-LLNGVEFADSFNFNPH 302
Query: 293 KLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKL 352
K + CS + K+ L ++ YL + + D + GR K+
Sbjct: 303 KWLLVNFDCSAMWVKRRTDLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRRFRSLKM 362
Query: 353 WLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNM 412
W +R G +G + I + ++L+ + P F + E + V F +
Sbjct: 363 WFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQDPR-FEVCAEVTLGLVCFRLKGS----- 416
Query: 413 PHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTE 472
+ L R+ A + + L R I S V G +
Sbjct: 417 ---------DGLNEALLERINSARKIHLVPCRLRGQF-VLRFAICSRKVESGHVRLAWEH 466
Query: 473 MDRLGHDL 480
+ L +L
Sbjct: 467 IRGLAAEL 474
>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha
beta protein, alternative splicing, catecholamine
biosynthesis, lyase; HET: LLP; 1.75A {Drosophila
melanogaster}
Length = 475
Score = 455 bits (1173), Expect = e-158
Identities = 120/490 (24%), Positives = 196/490 (40%), Gaps = 39/490 (7%)
Query: 5 ETFLKQLVNILLNYIKESNDRNEKVLHFYHPAEMKAMLDLDIPEKGLPLQKLIDDCFTTL 64
+ F K +V+ + Y++ +R +VL P +K ++ PEK Q ++ D +
Sbjct: 7 KDFAKTMVDFIAEYLENIRER--RVLPEVKPGYLKPLIPDAAPEKPEKWQDVMQDIERVI 64
Query: 65 KYQVRT-GHPMFMNQLSCGLDVVSMAGEWLIATANTNMFTYEIAPVFILMETVVLEKMRQ 123
V P F ++ + L FT+ +P +E V+++ + +
Sbjct: 65 MPGVTHWHSPKFHAYFPTANSYPAIVADMLSGAIACIGFTWIASPACTELEVVMMDWLGK 124
Query: 124 IIGW---------QGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGL----SAIKGQLV 170
++ G ++ S S L A L A+ K KE I G+LV
Sbjct: 125 MLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLKEVKELHPEWDEHTILGKLV 184
Query: 171 MFTSDQCHYSVRSCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNC 230
+ SDQ H SV + G+ + V S+ R+ + LE+ + + A+G IPF+
Sbjct: 185 GYCSDQAHSSVERAGLLGGVKLRS---VQSE-NHRMRGAALEKAIEQDVAEGLIPFYAVV 240
Query: 231 TSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWN 290
T GTT AFD ++E + K+N+W+HVDAA+ G + +YRH + GIE ADS +N
Sbjct: 241 TLGTTNSCAFDYLDECGPVGNKHNLWIHVDAAYAGSAFICPEYRH-LMKGIESADSFNFN 299
Query: 291 PHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIF 350
PHK M CS + K +++ + YL + + D I GR
Sbjct: 300 PHKWMLVNFDCSAMWLKDPSWVVNAFNVDPLYL--KHDMQGSAPDYRHWQIPLGRRFRAL 357
Query: 351 KLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVR 410
KLW R G E + I R A+ + F L E M V F +
Sbjct: 358 KLWFVLRLYGVENLQAHIRRHCNFAKQFGDLCVADSR-FELAAEINMGLVCFRLKGS--- 413
Query: 411 NMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLL 470
E L R+ G + + + D+ F R I S D+++
Sbjct: 414 -----------NERNEALLKRINGRGHIHLVPAKIKDV-YFLRMAICSRFTQSEDMEYSW 461
Query: 471 TEMDRLGHDL 480
E+ ++
Sbjct: 462 KEVSAAADEM 471
>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine
decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP;
2.11A {Methanocaldococcus jannaschii}
Length = 397
Score = 167 bits (425), Expect = 2e-47
Identities = 71/368 (19%), Positives = 145/368 (39%), Gaps = 38/368 (10%)
Query: 45 DIPEKGLPLQKLIDDCFTTLKYQVRTGHPMFMNQLSCGL--DVVSMAGEWLIATANTNMF 102
++ EKG+ ++++++ LK + + +V+ + + + TN+
Sbjct: 4 NMQEKGVSEKEILEE----LKKYRSLDLKYEDGNIFGSMCSNVLPITRKIVDIFLETNLG 59
Query: 103 TYEIAPVFILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGL 162
+ L+E + + ++ + + GG+ +NL A ++ ++
Sbjct: 60 DPGLFKGTKLLEEKAVALLGSLLNNKDAYGHIVSGGTEANLMALRCIKNIWREKRRKGLS 119
Query: 163 SAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKG 222
++++ H+S + L + P + + ++ V + G
Sbjct: 120 KNEHPKIIV--PITAHFSFEKGREMMDLE---YIYAPIKEDYTIDEKFVKDAVEDYDVDG 174
Query: 223 DIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIE 282
+ +GTT LG D IEE++ I ++ N+++HVDAA+GG ++ ++ + G+
Sbjct: 175 -----IIGIAGTTELGTIDNIEELSKIAKENNIYIHVDAAFGGLVIPFLDDKY-KKKGVN 228
Query: 283 R-------ADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYD 335
DS+T +PHK+ + I FK D + A YL +
Sbjct: 229 YKFDFSLGVDSITIDPHKMGHCPIPSGGILFK-DIGYKRYLDVDAPYL----------TE 277
Query: 336 TGDKVIQCGRH-NDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILE 394
T I R + R G EG K ++ ME Y+ KK+K F ++E
Sbjct: 278 TRQATILGTRVGFGGACTYAVLRYLGREGQRKIVNECMENTLYLYKKLKENN--FKPVIE 335
Query: 395 PEMVNVSF 402
P + V+
Sbjct: 336 PILNIVAI 343
>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal
phosphate; HET: LLP; 2.00A {Symbiobacterium
thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*
Length = 514
Score = 167 bits (425), Expect = 2e-46
Identities = 74/476 (15%), Positives = 147/476 (30%), Gaps = 66/476 (13%)
Query: 20 KESNDRNEKVLHFYHPAEMKAMLDLDIPEKGLPLQKLIDDCFTTLKYQVRTGHPMFMNQL 79
+ D + P + +P GLP +++ + + P + +
Sbjct: 45 DPTMDWLASLRSQIKPYRDRFPSHARLPRAGLPRAEILAE----IAAMGAAESPAWRDGY 100
Query: 80 ------SCGLDVVSMAGEWLIATANTNMFTYEIAPVFILMETVVLEKMRQIIGWQGGDS- 132
++ E + +N ++ P E V+ ++G
Sbjct: 101 ASGAVYHGDEHHIAFLNEVYALQSQSNPLHPDLWPSTAKFEAEVVAMTAHMLGGDAAGGT 160
Query: 133 ---ILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCG 189
+ GG+ S L A R KG++ H + A G
Sbjct: 161 VCGTVTSGGTESLLLAMKTYRDWA---RATKGIT----APEAVVPVSAHAAFDKAAQYFG 213
Query: 190 LGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADI 249
+ V P D R + + + V ++ G DPI EIA +
Sbjct: 214 I---KLVRTPLDADYRADVAAMREAITPN------TVVVAGSAPGYPHGVVDPIPEIAAL 264
Query: 250 CQKYNMWLHVDAAWGGGLLLSKKYRH----PRLTGIERADSVTWNPHKLMGTLLQCSTIH 305
++ + HVDA GG +L + P +E SV+ + HK S I
Sbjct: 265 AAEHGIGCHVDACLGGFILPWAERLGYPVPPFDFRLEGVTSVSADTHKYGYGAKGTSVIL 324
Query: 306 FKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGR-HNDIFKLWLQWRAKGDEGF 364
+++ LL ++A++ R W + G+EG+
Sbjct: 325 YRRPDLLHYQYFIAADWP---------GGLYFSPTFAGSRPGALSATAWAAMLSLGEEGY 375
Query: 365 EKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNMPHEKRLNILGEI 424
R+++ A+ + ++++P ++ +P + ++ LNI
Sbjct: 376 LDATRRILQAADRLKAGVRAIPS-LKILGDP-LWVIAV-----------ASDELNIYQ-- 420
Query: 425 TPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTEMDRLGHDL 480
+ M G + G P F ++ G +D L ++ +
Sbjct: 421 ---VMEEMAGRGWRLNGLH----RPPAFHVALTLRHTEPGVVDRFLADLQDAVAQV 469
>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine
biosynthesis, seven-stranded BETE-strand, PYR
5'-phosphate; HET: PLP; 2.50A {Methanococcus
maripaludis} SCOP: c.67.1.9
Length = 456
Score = 160 bits (406), Expect = 3e-44
Identities = 48/376 (12%), Positives = 108/376 (28%), Gaps = 54/376 (14%)
Query: 107 APVFILMETVVLEKMRQIIGWQGGDS--ILAPGGSISNLYAFLAARHKMFPTYKEKGLSA 164
A +M + + + G + I P + ++ L+A K
Sbjct: 125 ASGASIMYALTNKILESFFKQLGLNVHAIATPISTGMSISLCLSAARKK----------- 173
Query: 165 IKGQLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDI 224
G V+ H S + G+ V R + ++E + + G+
Sbjct: 174 -YGSNVVIYPYASHKSPIKAVSFVGMNMRLVETVLDGDRVYVPVEDIENAIKKEIELGNR 232
Query: 225 PFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRH-PRLTGIER 283
P V T D I EIA IC+ Y++ ++ A+ + + Y + R
Sbjct: 233 PC-VLSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAYA---IQNNYYLEKLKKAFKYR 288
Query: 284 ADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQC 343
D+V + K + T + ++ + +
Sbjct: 289 VDAVVSSSDKNLLTPIGGGLVYSTDAEFIKEISLSYPGRASA------------------ 330
Query: 344 GRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLIL----EPEMVN 399
+ + + G + + + + + + + + + K P
Sbjct: 331 ---TPVVNTLVSLLSMGSKNYLELVKNQKNSKKLLDELLNDLSKKTGGKFLDVESPIASC 387
Query: 400 VSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSA 459
+S P + + R+ I GT Y + ++
Sbjct: 388 ISVNSDPVEIAAKLYNLRVTGPRGIKKTDHFGNCYLGTYTHDY----------IVMNAAI 437
Query: 460 AVTEGDIDFLLTEMDR 475
V DI ++++++
Sbjct: 438 GVRTEDIVNSVSKLEK 453
>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl
phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}
Length = 497
Score = 149 bits (377), Expect = 7e-40
Identities = 61/402 (15%), Positives = 122/402 (30%), Gaps = 51/402 (12%)
Query: 20 KESNDRNEKVLHFYHPAEMKAMLDLDIPEKGLPLQKLIDDCFTTLKYQVRTGHPMFMN-- 77
KE + + ++ + M +P G+P +I++ K H +
Sbjct: 12 KEVTKVKQSIEDELIRSDSQLMNFPQLPSNGIPQDDVIEELN---KLNDLIPHTQWKEGK 68
Query: 78 ----QLSCGLDVVSMAGEWLIATANTNMFTYEIAPVFILMETVVLEKMRQIIGWQGGDSI 133
G D++ + N ++ P ME+ V+ + ++
Sbjct: 69 VSGAVYHGGDDLIHLQTIAYEKYCVANQLHPDVFPAVRKMESEVVSMVLRMFNAPSDTGC 128
Query: 134 --LAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLG 191
GG+ S L A L+A+ +G + + H A G+
Sbjct: 129 GTTTSGGTESLLLACLSAKMYA---LHHRG----ITEPEIIAPVTAHAGFDKAAYYFGMK 181
Query: 192 TDNCVEVPSDK-RGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADIC 250
V D ++ ++++ + + + ++ G D IE + I
Sbjct: 182 ---LRHVELDPTTYQVDLGKVKKFINKN------TVLLVGSAPNFPHGIADDIEGLGKIA 232
Query: 251 QKYNMWLHVDAAWGGGLL-----LSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIH 305
QKY + LHVD+ G ++ K + S++ + HK S I
Sbjct: 233 QKYKLPLHVDSCLGSFIVSFMEKAGYKNLPLLDFRVPGVTSISCDTHKYGFAPKGSSVIM 292
Query: 306 FKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCG-----RHNDIFKLWLQWRAKG 360
++ L + Y TG + W G
Sbjct: 293 YRNSDLR-------------MHQYYVNPAWTGGLYGSPTLAGSRPGAIVVGCWATMVNMG 339
Query: 361 DEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSF 402
+ G+ + ++ A K I+ ++ P +SF
Sbjct: 340 ENGYIESCQEIVGAAMKFKKYIQENIPDLDIMGNPRYSVISF 381
>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase,
pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis
thaliana}
Length = 502
Score = 137 bits (346), Expect = 1e-35
Identities = 61/404 (15%), Positives = 132/404 (32%), Gaps = 44/404 (10%)
Query: 20 KESNDRNEKVLHFYHPAEMKAML-DLDIPEKGLPLQ---KLIDDCFTTLKYQVRTGHPMF 75
++ + V + ++ L +PE +P + ++I+D L R F
Sbjct: 5 HAVSESDVSVHSTFASRYVRTSLPRFKMPENSIPKEAAYQIIND-ELMLDGNPRLNLASF 63
Query: 76 MNQLSCGLDVVSMAGEWLIATANTNMFTYEIAPVFILMETVVLEKMRQIIGWQGGDSILA 135
+ + + ++++ N N + PV ++ + + + ++ A
Sbjct: 64 VTT-----WMEPECDKLIMSSINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLEEAETA 118
Query: 136 PG-----GSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGL 190
G S + + A LA + K K +G K +V A +
Sbjct: 119 VGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPVDKPNIVT--GANVQVCWEKFARYFEV 176
Query: 191 GTDNCVEVPSDKRGRLI-PSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADI 249
EV + ++ P + +V E V G+T+ G F+ ++ + D+
Sbjct: 177 ---ELKEVKLSEGYYVMDPQQAVDMVDEN------TICVAAILGSTLNGEFEDVKLLNDL 227
Query: 250 CQKYN------MWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCST 303
+ N +HVDAA GG + + S+ + HK
Sbjct: 228 LVEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGW 287
Query: 304 IHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRH-NDIFKLWLQWRAKGDE 362
+ ++ L YL D + + + + + Q G E
Sbjct: 288 VIWRNKEDLPEELIFHINYL---------GADQPTFTLNFSKGSSQVIAQYYQLIRLGHE 338
Query: 363 GFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLP 406
G+ ++ E + + ++ F ++ + E V + + L
Sbjct: 339 GYRNVMENCRENMIVLREGLEKTER-FNIVSKDEGVPLVAFSLK 381
>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14,
autoinhibition, substituted aldamine, lyase; HET: PLP;
1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A*
1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*
Length = 452
Score = 109 bits (273), Expect = 5e-26
Identities = 59/375 (15%), Positives = 114/375 (30%), Gaps = 46/375 (12%)
Query: 46 IPEKGLP---LQKLIDDCFTTLKYQVRTGHPMFMNQLSCGLDVVSMAGEWLIATANTNMF 102
P + ++I+D L R F C + + + N N
Sbjct: 18 FPLHEMRDDVAFQIIND-ELYLDGNARQNLATF-----CQTWDDENVHKLMDLSINKNWI 71
Query: 103 TYEIAPVFILMETVVLEKMRQIIGWQGGDSILA-----PGGSISNLYAFLAARHKMFPTY 157
E P ++ + + + + A G S + + +A + +
Sbjct: 72 DKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRM 131
Query: 158 KEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSDK-RGRLIPSELERLVL 216
+ G K LV A + E+P + + P +
Sbjct: 132 EAAGKPTDKPNLVCGPV---QICWHKFARYWDV---ELREIPMRPGQLFMDPKRMIEACD 185
Query: 217 ERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNM------WLHVDAAWGGGLLLS 270
E V T G T G ++ + + D K+ +H+DAA GG L
Sbjct: 186 EN------TIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPF 239
Query: 271 KKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLY 330
+ R S++ + HK L C + ++ + L + +YL
Sbjct: 240 VAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDYL------- 292
Query: 331 DVRYDTGDKVIQCGRH-NDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKF 389
G I R + + ++ G EG+ K + ++A Y+ +I + +
Sbjct: 293 --GGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGP-Y 349
Query: 390 YLIL--EPEMVNVSF 402
I P+ +
Sbjct: 350 EFICTGRPDEGIPAV 364
>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order
transition, phosphate-loop, pyridoxal phospha
selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A
{Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*
Length = 450
Score = 61.6 bits (149), Expect = 2e-10
Identities = 44/260 (16%), Positives = 80/260 (30%), Gaps = 46/260 (17%)
Query: 134 LAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTD 193
+A G S++ FL RHK + S G
Sbjct: 124 MATGMSLT--LCFLTLRHKR------------PKAKYIIWPRIDQKSCFKSMVTAGFEPV 169
Query: 194 NCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKY 253
V R +E + E + I + T+ D +EE+A IC Y
Sbjct: 170 VIENVLEGDELRTDLKAVEAKIQELGPE-HILCLHSTTACFAP-RVPDRLEELAVICANY 227
Query: 254 NMWLHVDAAWGGGLLLSKKYRH--PRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGL 311
++ V+ A+G L S K H + + R D+ + K + + I +
Sbjct: 228 DIPHVVNNAYG---LQSSKCMHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNEPF 284
Query: 312 LISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHND--IFKLWLQWRAKGDEGFEKQID 369
+ +S Y GR + + + + G G+ K +
Sbjct: 285 I---QDISKMYP--------------------GRASASPSLDVLITLLSLGCSGYRKLLK 321
Query: 370 RLMELAEYMVKKIKSMPDKF 389
E+ Y+ ++K + +
Sbjct: 322 ERKEMFVYLSTQLKKLAEAH 341
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate
dependent decarboxylase, acid stress stringent response;
HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Length = 715
Score = 60.8 bits (147), Expect = 5e-10
Identities = 36/248 (14%), Positives = 69/248 (27%), Gaps = 43/248 (17%)
Query: 177 CHYSVRSCAAVCGLGTDNCVEVPSDKRGRLIP-------SELERLVLERKAKGDIPFFVN 229
CH S+ + + + G L ++ P
Sbjct: 244 CHKSLTHLMMMSDVTP-IYFRPTRNAYGILGGIPQSEFQHATIAKRVKETPNATWPVHAV 302
Query: 230 CTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIER----AD 285
T+ T ++ + I + +H D+AW S Y R
Sbjct: 303 ITNSTYDGLLYN-TDFIKKTLDVKS--IHFDSAWVPYTNFSPIYEGKCGMSGGRVEGKVI 359
Query: 286 SVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQM-------SAEYLFMQDKLYDVRYDTGD 338
T + HKL+ Q S IH K D + N+ S Y +
Sbjct: 360 YETQSTHKLLAAFSQASMIHVKGDVNEETFNEAYMMHTTTSPHYGIVA------------ 407
Query: 339 KVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMV 398
+ ++ G I+R ++ + + + F+ + +P+ +
Sbjct: 408 -------STETAAAMMK-GNAGKRLINGSIERAIKFRKEIKRLRTESDGWFFDVWQPDHI 459
Query: 399 N-VSFWYL 405
+ W L
Sbjct: 460 DTTECWPL 467
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate,
PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A
{Escherichia coli}
Length = 755
Score = 58.2 bits (140), Expect = 4e-09
Identities = 28/126 (22%), Positives = 48/126 (38%), Gaps = 7/126 (5%)
Query: 207 IPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGG 266
+ ++ L + G P + T+ T G +E D+ +K + LH D AW G
Sbjct: 295 LQKKISESPLTKDKAGQKPSYCVVTNCT-YDGVCYNAKEAQDLLEKTSDRLHFDEAWYGY 353
Query: 267 LLLSKKYRHPRLTGIER------ADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSA 320
+ Y E T + HKL+ L Q S IH ++ I+ ++ +
Sbjct: 354 ARFNPIYADHYAMRGEPGDHNGPTVFATHSTHKLLNALSQASYIHVREGRGAINFSRFNQ 413
Query: 321 EYLFMQ 326
Y+
Sbjct: 414 AYMMHA 419
>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine,
sepsecs, protein-RNA complex, alternative splicing,
cytoplasm, protein biosynthesis, pyridoxal phosphate,
selenium; HET: PLR SEP; 2.81A {Homo sapiens}
Length = 501
Score = 56.3 bits (135), Expect = 1e-08
Identities = 39/224 (17%), Positives = 71/224 (31%), Gaps = 32/224 (14%)
Query: 170 VMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVN 229
+ S G V R +E V E I +
Sbjct: 164 YIIWPRIDQKSCFKSMITAGFEPVVIENVLEGDELRTDLKAVEAKVQELGPD-CILCIHS 222
Query: 230 CTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRH--PRLTGIERADSV 287
TS D +EE+A IC Y++ V+ A+G + S K H + + R D+
Sbjct: 223 TTSCFAP-RVPDRLEELAVICANYDIPHIVNNAYG---VQSSKCMHLIQQGARVGRIDAF 278
Query: 288 TWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHN 347
+ K + + I D + ++S Y GR +
Sbjct: 279 VQSLDKNFMVPVGGAIIAGFNDSFI---QEISKMYP--------------------GRAS 315
Query: 348 D--IFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKF 389
+ + + G G++K + E+ Y+ +IK + + +
Sbjct: 316 ASPSLDVLITLLSLGSNGYKKLLKERKEMFSYLSNQIKKLSEAY 359
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase,
structural genomics; HET: PLP; 2.40A {Archaeoglobus
fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Length = 371
Score = 51.3 bits (123), Expect = 3e-07
Identities = 21/115 (18%), Positives = 40/115 (34%), Gaps = 10/115 (8%)
Query: 196 VEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNM 255
V + P + +E K T G +++IA +C +Y++
Sbjct: 120 VPKTDYPDYAITPENFAQT-IEETKKRGEVVLALITYPDGNYGNLPDVKKIAKVCSEYDV 178
Query: 256 WLHVDAAWGGGLLLSKKYRHPRLTGIER-ADSVTWNPHKLMGTLLQCSTIHFKQD 309
L V+ A+ G ++ E AD + + HK M + K++
Sbjct: 179 PLLVNGAYAIG--------RMPVSLKEIGADFIVGSGHKSMAASGPIGVMGMKEE 225
>1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A
{Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1
PDB: 1ord_A*
Length = 730
Score = 51.2 bits (122), Expect = 5e-07
Identities = 24/120 (20%), Positives = 36/120 (30%), Gaps = 6/120 (5%)
Query: 210 ELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLL 269
EL V +AK PF + T G E+ ++ D+AW G
Sbjct: 266 ELAAKVDPERAKWKRPFRLAVIQLGTYDGTIYNAHEVVKRIGHLCDYIEFDSAWVGYEQF 325
Query: 270 SKKYRH------PRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYL 323
R+ L + V + HK Q S IH K + ++
Sbjct: 326 IPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGFSQTSQIHKKDSHIKGQLRYCDHKHF 385
>2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A
{Staphylococcus aureus}
Length = 446
Score = 49.8 bits (119), Expect = 1e-06
Identities = 22/151 (14%), Positives = 41/151 (27%), Gaps = 14/151 (9%)
Query: 177 CHYSVRSCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCT-SGTT 235
H SV + + +E + K + G T
Sbjct: 105 VHKSVLHALDISQQ-EGHFIETHQSPLTNHYNKVNLSRLNNDGHKLVV--LTYPNYYGET 161
Query: 236 VLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLM 295
+EE+ + N+ + +D A G L AD V + HK +
Sbjct: 162 F-----NVEEVIKSLHQLNIPVLIDEAHGAHFGLQGFPDSTLNYQ---ADYVVQSFHKTL 213
Query: 296 GTLLQCSTIHFKQDGLLISCNQMSAEYLFMQ 326
L S ++ ++ + + Q
Sbjct: 214 PALTMGSVLYIHKN--APYRENIIEYLSYFQ 242
>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme,
pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter
freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A
2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*
Length = 456
Score = 49.3 bits (117), Expect = 2e-06
Identities = 42/327 (12%), Positives = 98/327 (29%), Gaps = 44/327 (13%)
Query: 172 FTSDQCHYSVRSCAAV-CGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFV-- 228
FT+ + H V + + +G + +L++L+ E+ A+ +I +
Sbjct: 123 FTTTRYHQEKNGAVFVDIVRDEAHDAGLNIAFKGDIDLKKLQKLIDEKGAE-NIAYICLA 181
Query: 229 --NCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKK-----YRHPRLTGI 281
+G + + + + ++ + + + + DA K + + + I
Sbjct: 182 VTVNLAGGQPV-SMANMRAVRELTEAHGIKVFYDATRCVENAYFIKEQEQGFENKSIAEI 240
Query: 282 ER-----ADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDT 336
AD T + K G + N + +F K V Y+
Sbjct: 241 VHEMFSYADGCTMSGKKDCLV----------NIGGFLCMND---DEMFSSAKELVVVYEG 287
Query: 337 GDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPE 396
+ A E E ++ ++ L + + I+EP
Sbjct: 288 MPSYGGLAGRDMEAMAIGLREAMQYEYIEHRVKQVRYLGDK-------LKAAGVPIVEPV 340
Query: 397 MVNVSFWYLPTRVRNMPHEKRLNILGEITPILKG--RMMQAGTMMVGYQPLND-----LP 449
+ F ++ ++ + ++ R M+ G + G +
Sbjct: 341 GGHAVFLDARRFCEHLTQDEFPAQSLAASIYVETGVRSMERGIISAGRNNVTGEHHRPKL 400
Query: 450 NFFRNIISSAAVTEGDIDFLLTEMDRL 476
R I T +D + + +L
Sbjct: 401 ETVRLTIPRRVYTYAHMDVVADGIIKL 427
>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase,
pyridoxal 5'-phosphate, monovalent cation binding site;
HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2
Length = 467
Score = 45.6 bits (107), Expect = 3e-05
Identities = 28/180 (15%), Positives = 63/180 (35%), Gaps = 19/180 (10%)
Query: 133 ILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGT 192
I A G + F + K + + F + H + C A+ + T
Sbjct: 95 IPAHQGRGAENILFPVLLKYK--QKEGKAKNPVFISNFHFDTTAAHVELNGCKAI-NIVT 151
Query: 193 DNCV--EVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGA---FDPIEEIA 247
+ E D +G +L+ + + +I V+ + + G ++E+
Sbjct: 152 EKAFDSETYDDWKGDFDIKKLKEN-IAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVY 210
Query: 248 DICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTG----------IERADSVTWNPHKLMGT 297
+I +++ +++ +D+A K R P+ + AD++T + K
Sbjct: 211 EIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPLL 270
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 43.3 bits (101), Expect = 2e-04
Identities = 56/469 (11%), Positives = 129/469 (27%), Gaps = 121/469 (25%)
Query: 9 KQLVNILLNYIKESNDRNEKVLHFYHPAEMKAMLDLDIPEKGLPLQKLIDDCFTTLKYQV 68
K ++++ + ++ D + V K +D I + F TL +
Sbjct: 19 KDILSVFEDAFVDNFDCKD-VQDMPKSILSKEEID-HIIMSKDAVSGT-LRLFWTLLSKQ 75
Query: 69 RTGHPMFMNQLSCGLDVVSMAGEWLIATANTNMFTYE-IAPVFILMETVVLEKMRQIIGW 127
F+ +V+ + ++L++ E P M T + + R +
Sbjct: 76 EEMVQKFVE------EVLRINYKFLMSP-----IKTEQRQPS---MMTRMYIEQRDRL-- 119
Query: 128 QGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAV 187
+ + A ++S R + + ++ L + V +
Sbjct: 120 YNDNQVFAKY-NVS--------RLQPYLKLRQALLELRPAKNV---------------LI 155
Query: 188 CGLGTDNC------VEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFD 241
G+ ++V + ++ K I F++N L +
Sbjct: 156 DGVL--GSGKTWVALDVCLSYK------------VQCKMDFKI-FWLN-------LKNCN 193
Query: 242 PIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHP------RLTGI------ERA----D 285
E + ++ Q + +D W S + L + E
Sbjct: 194 SPETVLEMLQ--KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL 251
Query: 286 SVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGR 345
+V N L C LL + + ++L + D +
Sbjct: 252 NV-QNAKAWNAFNLSCKI-------LLTTRFKQVTDFL-SAATTTHISLDHHSMTLTPDE 302
Query: 346 HNDIFKLWLQWRA--------KGD--------EGFEKQIDRLMELAEYMVKKIKSMPDKF 389
+ +L R + E + K+ ++ +
Sbjct: 303 VKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS 362
Query: 390 YLILEPEMVNVSFWYL---PTRVRNMPHEKRLNIL-GEITPILKGRMMQ 434
+LEP F L P ++P L+++ ++ ++
Sbjct: 363 LNVLEPAEYRKMFDRLSVFPPSA-HIP-TILLSLIWFDVIKSDVMVVVN 409
Score = 40.6 bits (94), Expect = 0.001
Identities = 70/459 (15%), Positives = 128/459 (27%), Gaps = 152/459 (33%)
Query: 2 HTTETFLKQLVNILLNYIKESNDRNEKVLHFYHPAE-MKAMLDLDIPEKGLPLQKLI-DD 59
++ ET L+ L +L R++ + ++A L + K L+ +
Sbjct: 193 NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN 252
Query: 60 -------------C---FTTLKYQV-------RTGHP----------------MFMNQLS 80
C TT QV T H + + L
Sbjct: 253 VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD 312
Query: 81 CGLD------------VVSMAGEWLIATANTNMFTYEIAPVFILMETVVLEKMRQIIGWQ 128
C +S+ E + T + V +K+ II
Sbjct: 313 CRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNW----------KHVNCDKLTTII--- 359
Query: 129 GGDSI--LAPGGSISNLYAFLAARHKMFPT---YKEKGLS----AIKGQLVMFTSDQCHY 179
S+ L P ++ L+ +FP LS + VM ++ H
Sbjct: 360 -ESSLNVLEP-AEYRKMFDRLS----VFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLH- 412
Query: 180 SVRSCAA---------VCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNC 230
S + + + V++ ++ L R +++
Sbjct: 413 -KYSLVEKQPKESTISIPSIYLELKVKLENEY-------ALHRSIVDHYNIPK------- 457
Query: 231 TSGTTVLGAFDPIEEIADICQKYNMWL---HVDAAWGGGL--LLSKKYRHPRLTGIE--- 282
FD + I +Y H+ L + R +E
Sbjct: 458 --------TFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRF--LEQKI 507
Query: 283 RADSVTWN-PHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVR-YDTGDKV 340
R DS WN ++ TL Q +K Y+ D Y+ D +
Sbjct: 508 RHDSTAWNASGSILNTLQQLKF--YKP-------------YICDNDPKYERLVNAILDFL 552
Query: 341 IQCG------RHNDIFKLWLQWRAKGDEGFE---KQIDR 370
+ ++ D+ ++ L A+ + FE KQ+ R
Sbjct: 553 PKIEENLICSKYTDLLRIALM--AEDEAIFEEAHKQVQR 589
>1svv_A Threonine aldolase; structural genomics, structural genomics of
pathogenic proto SGPP, protein structure initiative,
PSI; 2.10A {Leishmania major} SCOP: c.67.1.1
Length = 359
Score = 39.2 bits (92), Expect = 0.002
Identities = 25/152 (16%), Positives = 51/152 (33%), Gaps = 30/152 (19%)
Query: 119 EKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCH 178
+ +++ D GG+ +NL A ++ + + H
Sbjct: 56 RLIGELLERPDADVHFISGGTQTNLIACSL----ALRPWEA-----------VIATQLGH 100
Query: 179 YSVRSCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFV--------NC 230
S A+ G V P G+L +++E + + V N
Sbjct: 101 ISTHETGAIEATGH-KVVTAPCP-DGKLRVADIESAL----HENRSEHMVIPKLVYISNT 154
Query: 231 TSGTTVLGAFDPIEEIADICQKYNMWLHVDAA 262
T T +E+I+ C+++ ++L +D A
Sbjct: 155 TEVGTQY-TKQELEDISASCKEHGLYLFLDGA 185
>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas
putida} SCOP: c.67.1.1
Length = 356
Score = 39.1 bits (92), Expect = 0.003
Identities = 18/98 (18%), Positives = 32/98 (32%), Gaps = 10/98 (10%)
Query: 172 FTSDQCHYSVRSCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFV--- 228
+ H + C A + +L L R+ GD+
Sbjct: 87 YCHPASHINNDECGAPEFFSNGAKLMTVDGPAAKLDIVRLRERT--REKVGDVHTTQPAC 144
Query: 229 ----NCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAA 262
T ++ D IE I D+C+ ++ LH+D +
Sbjct: 145 VSITQATEVGSIY-TLDEIEAIGDVCKSSSLGLHMDGS 181
>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism;
HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2
PDB: 2c44_A 2v1p_A* 2v0y_A*
Length = 467
Score = 38.5 bits (89), Expect = 0.005
Identities = 23/150 (15%), Positives = 53/150 (35%), Gaps = 11/150 (7%)
Query: 119 EKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCH 178
E ++ I G+Q +I G + K + F +
Sbjct: 81 ESVKNIFGYQ--YTIPTHQGRGAEQIYIPVLIKKREQEKGLDRSKMVAFSNYFFDT-TQG 137
Query: 179 YSVRSCAAVCGLGTDNCVEVPSDK--RGRLIPSELERLVLERKAKGDIPFFV----NCTS 232
+S + V + + +G LER + E ++P+ V + ++
Sbjct: 138 HSQINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPN-NVPYIVATITSNSA 196
Query: 233 GTTVLGAFDPIEEIADICQKYNMWLHVDAA 262
G + + ++ + I +KY++ + +D+A
Sbjct: 197 GGQPV-SLANLKAMYSIAKKYDIPVVMDSA 225
>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston
bacterial structural genomics initiative, BSGI,
transferase; HET: PLP; 2.05A {Escherichia coli} PDB:
3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*
Length = 423
Score = 36.4 bits (85), Expect = 0.019
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 242 PIEEIADICQKYNMWLHVDAA 262
I I ++C+ + HVDA
Sbjct: 181 DIAAIGEMCRARGIIYHVDAT 201
>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal
phosphate, structural PSI, protein structure initiative;
HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB:
1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*
Length = 406
Score = 36.3 bits (85), Expect = 0.020
Identities = 15/66 (22%), Positives = 28/66 (42%), Gaps = 8/66 (12%)
Query: 198 VPSDKRGRLIPSELERLVLER-KAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMW 256
+P + G L L L E+ + + T + VLG +P+ E+ + ++
Sbjct: 144 IPLNPDGTLQLETLPTLFDEKTR-------LLAITHVSNVLGTENPLAEMITLAHQHGAK 196
Query: 257 LHVDAA 262
+ VD A
Sbjct: 197 VLVDGA 202
>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA
synthase, biotin biosynthesis, 8-AMIN oxonanoate
synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB:
2g6w_A* 1dje_A* 1dj9_A*
Length = 384
Score = 36.0 bits (84), Expect = 0.020
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 242 PIEEIADICQKYNMWLHVDAAWGGGLL 268
P+ EI + Q++N WL VD A G G++
Sbjct: 186 PLAEIQQVTQQHNGWLMVDDAHGTGVI 212
>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase;
HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3
Length = 420
Score = 36.3 bits (85), Expect = 0.021
Identities = 16/66 (24%), Positives = 26/66 (39%), Gaps = 8/66 (12%)
Query: 198 VPSDKRGRLIPSELERLVLER-KAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMW 256
V D++ + L+ E+ K V + LG +P EEIA + +
Sbjct: 149 VQLDEQESFDLEHFKTLLSEKTK-------LVTVVHISNTLGCVNPAEEIAQLAHQAGAK 201
Query: 257 LHVDAA 262
+ VDA
Sbjct: 202 VLVDAC 207
>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence,
acyltransferase, aminotransferase, pyridoxal PHO
transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB:
3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A
Length = 409
Score = 36.1 bits (84), Expect = 0.022
Identities = 12/57 (21%), Positives = 23/57 (40%), Gaps = 6/57 (10%)
Query: 242 PIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTL 298
P+ E+ +I +++ L VD + G P G+ +T H + +L
Sbjct: 204 PLAELVNISKEFGCALLVDESHSLGTH------GPNGAGLLAELGLTREVHFMTASL 254
>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate
aminotransferase, archaea, thermococcus L transferase;
HET: PMP; 2.30A {Thermococcus litoralis}
Length = 407
Score = 35.3 bits (82), Expect = 0.039
Identities = 20/74 (27%), Positives = 29/74 (39%), Gaps = 17/74 (22%)
Query: 194 NCVEVPSDKRGRLIPSELERLVLERKAKGD-------IPFFVNCTSGTTVLGAFDPIE-- 244
VP D G + LE + E KAKG IP N G T+ +E
Sbjct: 145 KIEGVPVDNDG-MRVDLLEEKIKELKAKGQKVKLIYTIPTGQNPM-GVTM-----SMERR 197
Query: 245 -EIADICQKYNMWL 257
+ +I KY++ +
Sbjct: 198 KALLEIASKYDLLI 211
>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism,
transferase; HET: PLP; 2.30A {Coxiella burnetii}
Length = 399
Score = 35.2 bits (82), Expect = 0.043
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 242 PIEEIADICQKYNMWLHVDAAWGGGLL 268
++ I D+ KYN + VD + G +
Sbjct: 193 DLKSICDLADKYNALVMVDDSHAVGFI 219
>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple
complex, schiff-base linkage, kynuren aminotransferase;
HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A*
3ath_A* 3av7_A* 1x0m_A 1wst_A*
Length = 448
Score = 34.5 bits (80), Expect = 0.068
Identities = 14/74 (18%), Positives = 30/74 (40%), Gaps = 17/74 (22%)
Query: 194 NCVEVPSDKRGRLIPSELERLVLERKAKGD-------IPFFVNCTSGTTVLGAFDPIE-- 244
+++P D G + LE + E K++G +P F N G T+ +
Sbjct: 187 QYIQIPLDDEG-MKVEILEEKLKELKSQGKKVKVVYTVPTFQNPA-GVTM-----NEDRR 239
Query: 245 -EIADICQKYNMWL 257
+ ++ +Y+ +
Sbjct: 240 KYLLELASEYDFIV 253
>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate
COA ligase, pyridoxal phosphate, COEN transferase,
structural genomics; HET: PLP; 2.00A {Escherichia coli}
SCOP: c.67.1.4
Length = 401
Score = 34.5 bits (80), Expect = 0.076
Identities = 6/27 (22%), Positives = 14/27 (51%)
Query: 242 PIEEIADICQKYNMWLHVDAAWGGGLL 268
++ + D+ KY+ + VD + G +
Sbjct: 195 NLKGVCDLADKYDALVMVDDSHAVGFV 221
>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas
paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A*
2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*
Length = 427
Score = 34.1 bits (79), Expect = 0.081
Identities = 7/27 (25%), Positives = 14/27 (51%)
Query: 242 PIEEIADICQKYNMWLHVDAAWGGGLL 268
P++E+ + +K+ + VD A G
Sbjct: 212 PLKEMVAVAKKHGAMVLVDEAHSMGFF 238
>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme
biosynthesis, pyridoxal PHOS dependent, transferase,
acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus}
SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*
Length = 401
Score = 34.1 bits (79), Expect = 0.089
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 238 GAFDPIEEIADICQKYNMWLHVDAAWGGGLL 268
G F PI+EI DI +++ ++D G+
Sbjct: 192 GDFGPIKEICDIAEEFGALTYIDEVHAVGMY 222
>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium
tuberculosis}
Length = 406
Score = 33.7 bits (78), Expect = 0.11
Identities = 12/68 (17%), Positives = 23/68 (33%), Gaps = 9/68 (13%)
Query: 196 VEVPSDKRGRLIPSELERLVLER-KAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYN 254
EV + G L + E L+ + + V S + LG + + +
Sbjct: 144 AEVDIE-TGELPTWQWESLISKSTR-------LVAVNSASGTLGGVTDLRAMTKLVHDVG 195
Query: 255 MWLHVDAA 262
+ VD +
Sbjct: 196 ALVVVDHS 203
>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent
aminotransferase fold; HET: PLP; 2.20A {Salmonella
typhimurium} SCOP: c.67.1.3
Length = 366
Score = 33.7 bits (78), Expect = 0.11
Identities = 14/77 (18%), Positives = 28/77 (36%), Gaps = 7/77 (9%)
Query: 185 AAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIE 244
A + G+ + R ++ +L V+ + T +L +PI+
Sbjct: 99 AGLMGI---AHHAYDCGEVARPDVQAIDA-ILNADPTISHIAMVHSETTTGML---NPID 151
Query: 245 EIADICQKYNMWLHVDA 261
E+ + +Y VDA
Sbjct: 152 EVGALAHRYGKTYIVDA 168
>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha
& beta protein, PLP-dependent transferase, aminotransf
mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB:
2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*
Length = 425
Score = 33.8 bits (78), Expect = 0.11
Identities = 17/80 (21%), Positives = 32/80 (40%), Gaps = 23/80 (28%)
Query: 194 NCVEVPSDKRGRLIPSELERLVLERKAKGD-------------IPFFVNCTSGTTVLGAF 240
N + V SD+ G ++P L ++ K + +P N T G ++
Sbjct: 155 NIINVASDESG-IVPDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPT-GNSL---- 208
Query: 241 DPIE---EIADICQKYNMWL 257
E EI ++ +KY+ +
Sbjct: 209 -TSERKKEIYELARKYDFLI 227
>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway,
transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP:
c.67.1.3 PDB: 2ch2_A*
Length = 396
Score = 33.8 bits (78), Expect = 0.11
Identities = 15/79 (18%), Positives = 29/79 (36%), Gaps = 10/79 (12%)
Query: 184 CAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNC-TSGTTVLGAFDP 242
+ G + + L R + + K F + +S + +L P
Sbjct: 111 MSERYGA---DVRTIEGPPDRPFSLETLARAIELHQPK--CLFLTHGDSS-SGLL---QP 161
Query: 243 IEEIADICQKYNMWLHVDA 261
+E + IC +++ L VDA
Sbjct: 162 LEGVGQICHQHDCLLIVDA 180
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 34.3 bits (78), Expect = 0.12
Identities = 8/35 (22%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 8 LKQLVNILLNYIKESNDRNEKVLHFYHPAEMKAML 42
L + N+L N+IK ++ E++ L
Sbjct: 1862 LDTVTNVL-NFIKLQKIDIIELQKSLSLEEVEGHL 1895
>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type
I, acyltransferase, PY phosphate; HET: PLP; 2.30A
{Sphingobacterium multivorum}
Length = 398
Score = 33.7 bits (78), Expect = 0.12
Identities = 6/27 (22%), Positives = 14/27 (51%)
Query: 242 PIEEIADICQKYNMWLHVDAAWGGGLL 268
+ E+ I +++ + VD A G++
Sbjct: 191 NLPELTSIANEFDAAVMVDDAHSLGVI 217
>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster
synthesis, C-S BE transferase; HET: PLP; 2.00A
{Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*
Length = 384
Score = 33.6 bits (78), Expect = 0.14
Identities = 23/77 (29%), Positives = 30/77 (38%), Gaps = 28/77 (36%)
Query: 198 VPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVL----------GAFDPIEEIA 247
VP D RG + ELE+LV E T L G P+E++
Sbjct: 119 VPVDSRGVVKLEELEKLVDED----------------TFLVSIMAANNEVGTIQPVEDVT 162
Query: 248 DICQKYNMW--LHVDAA 262
I +K N +HVDA
Sbjct: 163 RIVKKKNKETLVHVDAV 179
>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent
enzymes, purine metabolism transaminases,
aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}
Length = 416
Score = 33.4 bits (77), Expect = 0.15
Identities = 18/79 (22%), Positives = 31/79 (39%), Gaps = 10/79 (12%)
Query: 184 CAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNC-TSGTTVLGAFDP 242
A G N + + P ++ R + + K K I V+ TS T + P
Sbjct: 104 IAERYGA---NVHMLECEWGTVFDPEDIIREIKKVKPK--IVAMVHGETS-TGRI---HP 154
Query: 243 IEEIADICQKYNMWLHVDA 261
++ I + C+ + VDA
Sbjct: 155 LKAIGEACRTEDALFIVDA 173
>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate
aminotransferase; HET: PGU; 1.67A {Thermus thermophilus}
PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*
Length = 397
Score = 33.3 bits (77), Expect = 0.18
Identities = 12/69 (17%), Positives = 25/69 (36%), Gaps = 12/69 (17%)
Query: 194 NCVEVPSDKRGRLIPSELERLVLERKAKG--DIPFFVNCTSGTTVLGAFDPIE---EIAD 248
+ VP+ + G LE ++ + + IP F N T G P+ +
Sbjct: 138 RFLTVPAGEEG-PDLDALEEVLKRERPRFLYLIPSFQNPT-GGLT-----PLPARKRLLQ 190
Query: 249 ICQKYNMWL 257
+ + + +
Sbjct: 191 MVMERGLVV 199
>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A
{Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*
Length = 384
Score = 33.0 bits (76), Expect = 0.18
Identities = 15/79 (18%), Positives = 31/79 (39%), Gaps = 10/79 (12%)
Query: 184 CAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNC-TSGTTVLGAFDP 242
+ N + + P E+E V + + K + + TS T V +P
Sbjct: 95 IFKRYPV---NVKVLRPSPGDYVKPGEVEEEVRKSEYK--LVALTHVETS-TGVR---EP 145
Query: 243 IEEIADICQKYNMWLHVDA 261
++++ + +KY + VD
Sbjct: 146 VKDVINKIRKYVELIVVDG 164
>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein,
PLP-dependent transferase; HET: LLP; 1.75A {Aedes
aegypti} PDB: 2hui_A* 2huu_A*
Length = 393
Score = 32.6 bits (75), Expect = 0.25
Identities = 19/79 (24%), Positives = 29/79 (36%), Gaps = 10/79 (12%)
Query: 184 CAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNC-TSGTTVLGAFDP 242
A G + V S L E+ +L K + F +S T VL
Sbjct: 112 MATRYGA---DVRVVKSKVGQSLSLDEIRDALLIHKPS--VLFLTQGDSS-TGVL---QG 162
Query: 243 IEEIADICQKYNMWLHVDA 261
+E + +C ++N L VD
Sbjct: 163 LEGVGALCHQHNCLLIVDT 181
>1vp4_A Aminotransferase, putative; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP:
c.67.1.1
Length = 425
Score = 32.6 bits (75), Expect = 0.26
Identities = 18/76 (23%), Positives = 31/76 (40%), Gaps = 19/76 (25%)
Query: 194 NCVEVPSDKRGRLIPSELERLVLERKAKGD---------IPFFVNCTSGTTVLGAFDPIE 244
N V VP + G + + LER + E G + F N G T +E
Sbjct: 156 NFVVVPLEDDG-MDLNVLERKLSEFDKNGKIKQVKFIYVVSNFHNPA-GVTT-----SLE 208
Query: 245 ---EIADICQKYNMWL 257
+ +I +KY++++
Sbjct: 209 KRKALVEIAEKYDLFI 224
>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative
aminotransferase, structural genomics, center for
structural genomics, JCSG; HET: PLP; 1.65A {Mus
musculus} PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*
Length = 393
Score = 32.2 bits (74), Expect = 0.32
Identities = 16/79 (20%), Positives = 31/79 (39%), Gaps = 10/79 (12%)
Query: 184 CAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNC-TSGTTVLGAFDP 242
A G ++ E+E + + K + F V+ +S T V+ P
Sbjct: 116 IADRIGA---RVHQMIKKPGEHYTLQEVEEGLAQHKPV--LLFLVHGESS-TGVV---QP 166
Query: 243 IEEIADICQKYNMWLHVDA 261
++ ++C +Y L VD+
Sbjct: 167 LDGFGELCHRYQCLLLVDS 185
>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP;
2.58A {Klebsiella pneumoniae}
Length = 411
Score = 32.2 bits (74), Expect = 0.36
Identities = 18/79 (22%), Positives = 32/79 (40%), Gaps = 10/79 (12%)
Query: 184 CAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNC-TSGTTVLGAFDP 242
A C + P ++E V + + + V TS TT+L P
Sbjct: 106 IARRCRA---EVHTIEVPWGEVFTPDQVEDAVKRIRPR--LLLTVQGDTS-TTML---QP 156
Query: 243 IEEIADICQKYNMWLHVDA 261
+ E+ +IC++Y+ + DA
Sbjct: 157 LAELGEICRRYDALFYTDA 175
>3bb8_A CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartate
aminotransferase fold, oxidoreductase; HET: PLP; 2.35A
{Yersinia pseudotuberculosis} PDB: 3bcx_A
Length = 437
Score = 32.2 bits (74), Expect = 0.39
Identities = 16/127 (12%), Positives = 40/127 (31%), Gaps = 29/127 (22%)
Query: 367 QIDRL-------MELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNMPHEKRLN 419
Q++R+ +Y+ ++S D L E + S++ P ++ R++
Sbjct: 302 QLERIEEFVEKRKANFKYLKDALQSCADFIELPEATENSDPSWFGFPITLKEDSGVSRID 361
Query: 420 ILGE------------ITPILKGRMMQAGTMMVGYQPLNDLPN---FFRNIIS---SAAV 461
++ + + V Y+ + +L N +
Sbjct: 362 LVKFLDEAKVGTRLLFAGNLTRQPYFHD----VKYRVVGELTNTDRIMNQTFWIGIYPGL 417
Query: 462 TEGDIDF 468
T +D+
Sbjct: 418 THDHLDY 424
>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal
5'-phosphate, thiocystei aminoacrylate, enzyme-product
complex; HET: PDA; 1.55A {Synechocystis SP} SCOP:
c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*
Length = 390
Score = 32.1 bits (74), Expect = 0.42
Identities = 11/72 (15%), Positives = 22/72 (30%), Gaps = 12/72 (16%)
Query: 196 VEVPSDKRGRLIPSELERLVLER-KAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYN 254
V + + L + + + V + G P+ EI +C+++
Sbjct: 132 FPVAATLNQGDAAAVLANHLGPKTR-------LVILSHLLWNTGQVLPLAEIMAVCRRHQ 184
Query: 255 MWLH----VDAA 262
VD A
Sbjct: 185 GNYPVRVLVDGA 196
>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR
genomics, JCSG, PSI, protein structure initiative, joint
CE structural genomics; HET: PLP; 1.70A {Nostoc SP}
SCOP: c.67.1.3
Length = 393
Score = 31.8 bits (73), Expect = 0.49
Identities = 15/79 (18%), Positives = 27/79 (34%), Gaps = 10/79 (12%)
Query: 184 CAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNC-TSGTTVLGAFDP 242
A G + + EL + + I V+ TS T P
Sbjct: 127 MAGRYGA---DVRTISKPWGEVFSLEELRTALETHRPA--ILALVHAETS-TGAR---QP 177
Query: 243 IEEIADICQKYNMWLHVDA 261
+E + ++C+++ L VD
Sbjct: 178 LEGVGELCREFGTLLLVDT 196
>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A
{Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*
Length = 392
Score = 31.8 bits (73), Expect = 0.51
Identities = 11/78 (14%), Positives = 29/78 (37%), Gaps = 7/78 (8%)
Query: 184 CAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPI 243
A + +E+ + P + +L+ + + + + + + +PI
Sbjct: 101 WAKRYSP---HLLEIEVPYNEAIDPQAVAD-MLKAHPEITVVSVCHHDTPSGTI---NPI 153
Query: 244 EEIADICQKYNMWLHVDA 261
+ I + + +L VDA
Sbjct: 154 DAIGALVSAHGAYLIVDA 171
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 30.9 bits (69), Expect = 0.58
Identities = 6/43 (13%), Positives = 14/43 (32%), Gaps = 14/43 (32%)
Query: 355 QWR-------AKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFY 390
+WR + D + E A+ K + +++
Sbjct: 89 KWREEQRKRLQELDAASKVMEQEWREKAK---KDL----EEWN 124
>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase;
PLP, structural genomics, NPPSFA; HET: PLP; 1.90A
{Pyrococcus horikoshii}
Length = 386
Score = 31.4 bits (72), Expect = 0.59
Identities = 16/79 (20%), Positives = 32/79 (40%), Gaps = 9/79 (11%)
Query: 184 CAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNC-TSGTTVLGAFDP 242
G V + + + P +L+ L + + TS T VL +P
Sbjct: 113 VVESNGR---KAVVLEYEPGKAVKPEDLDD-ALRKNPDVEAVTITYNETS-TGVL---NP 164
Query: 243 IEEIADICQKYNMWLHVDA 261
+ E+A + ++++ + VDA
Sbjct: 165 LPELAKVAKEHDKLVFVDA 183
>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for
structural genomics, JCSG, prote structure initiative,
PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4}
Length = 444
Score = 31.6 bits (72), Expect = 0.66
Identities = 15/77 (19%), Positives = 28/77 (36%), Gaps = 11/77 (14%)
Query: 196 VEVPSDKRGRLIPSELERLVLERKAKGD--------IPFFVNCTSGTTVLGAFDPIEEIA 247
EV D ++ LE N T G + + + +A
Sbjct: 176 DEVTHDGEEGFFKYRVDFEALENLPALKEGRIGAICCSRPTNPT-GNVL--TDEEMAHLA 232
Query: 248 DICQKYNMWLHVDAAWG 264
+I ++Y++ L +D A+G
Sbjct: 233 EIAKRYDIPLIIDNAYG 249
>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for
structural genomics, JCSG; HET: MSE LLP; 1.70A
{Eubacterium rectale}
Length = 376
Score = 31.1 bits (71), Expect = 0.72
Identities = 9/49 (18%), Positives = 13/49 (26%), Gaps = 7/49 (14%)
Query: 216 LERKAKGDIP--FFVNC-TSGTTVLGAFDPIEEIADICQKYNMWLHVDA 261
L + TS I + C+K NM+ D
Sbjct: 137 LYEYDNQNFTGLLVNVDETST----AVLYDTMMIGEFCKKNNMFFVCDC 181
>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal
binding protein complex; HET: PLP EPE; 2.53A
{Archaeoglobus fulgidus} PDB: 4eb7_A*
Length = 382
Score = 31.3 bits (72), Expect = 0.72
Identities = 8/21 (38%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
Query: 242 PIEEIADICQKYNMWLHVDAA 262
P+EEI+++ LH+DA
Sbjct: 156 PVEEISEVLAGKAA-LHIDAT 175
>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national
PROJ protein structural and functional analyses; HET:
PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*
Length = 353
Score = 31.0 bits (71), Expect = 0.83
Identities = 16/77 (20%), Positives = 32/77 (41%), Gaps = 8/77 (10%)
Query: 185 AAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIE 244
AA+ GL + + + P + R + R+ + + V+ + T VL +P E
Sbjct: 93 AALHGL---DPEVLDFPPGEPVDPEAVARALKRRRYR--MVALVHGETSTGVL---NPAE 144
Query: 245 EIADICQKYNMWLHVDA 261
I + ++ +DA
Sbjct: 145 AIGALAKEAGALFFLDA 161
>3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate,
transferase; HET: PLP SLP; 1.55A {Rattus norvegicus}
PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A*
Length = 432
Score = 30.7 bits (70), Expect = 1.3
Identities = 9/31 (29%), Positives = 12/31 (38%), Gaps = 10/31 (32%)
Query: 242 PIEEIADICQKYNM----------WLHVDAA 262
PI EI+ + N +H DAA
Sbjct: 193 PISEISRRIKALNQIRAASGLPRVLVHTDAA 223
>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics,
joint center for structural genomics, JCSG, prote
structure initiative; HET: MSE; 1.80A {Salmonella
typhimurium}
Length = 417
Score = 30.3 bits (69), Expect = 1.5
Identities = 11/71 (15%), Positives = 26/71 (36%), Gaps = 4/71 (5%)
Query: 194 NCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKY 253
N +P + + E + N T G + + + ++ + ++
Sbjct: 157 NIELLPEGQFK-YHVDFEHLHIGEETGMICVSRPTNPT-GNVI--TDEELMKLDRLANQH 212
Query: 254 NMWLHVDAAWG 264
N+ L +D A+G
Sbjct: 213 NIPLVIDNAYG 223
>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP,
pyridoxal phosphate, HOMO- oligomerization, unknown
function; 1.70A {Methanocaldococcus jannaschii} SCOP:
c.67.1.8 PDB: 2aev_A*
Length = 374
Score = 29.8 bits (67), Expect = 1.8
Identities = 11/58 (18%), Positives = 23/58 (39%), Gaps = 5/58 (8%)
Query: 240 FDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIER-ADSVTWNPHKLMG 296
+ +++ + + + VD A G + + P ++ AD V + KLM
Sbjct: 158 LENFKKVINTAKNKEAIVFVDDAS--GARVRLLFNQPPA--LKLGADLVVTSTDKLME 211
>2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET:
GSH; 2.10A {Populus tremula x populus tremuloides} PDB:
1z7p_A 1z7r_A
Length = 116
Score = 28.0 bits (63), Expect = 2.7
Identities = 11/46 (23%), Positives = 17/46 (36%), Gaps = 1/46 (2%)
Query: 170 VMFTSDQCHYSVRSCAAVCGLGTD-NCVEVPSDKRGRLIPSELERL 214
V+F+ C Y R + +G VE+ G + S L
Sbjct: 23 VVFSKTYCGYCNRVKQLLTQVGASYKVVELDELSDGSQLQSALAHW 68
>2vy1_A Protein leafy, leafy; DNA-binding, polymorphism, transcription;
2.10A {Arabidopsis thaliana} PDB: 2vy2_A
Length = 194
Score = 28.9 bits (64), Expect = 2.8
Identities = 10/31 (32%), Positives = 19/31 (61%)
Query: 400 VSFWYLPTRVRNMPHEKRLNILGEITPILKG 430
+S WY+PT++R + H +R N + ++ G
Sbjct: 143 LSIWYVPTKLRQLCHLERNNAVAAAAALVGG 173
>1e5x_A Threonine synthase; threonine biosynthesis, PLP enzyme,
S-adenosyl-methionine, allostery; 2.25A {Arabidopsis
thaliana} SCOP: c.79.1.1 PDB: 2c2b_A* 2c2g_A*
Length = 486
Score = 29.4 bits (66), Expect = 3.2
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 6/56 (10%)
Query: 108 PVFIL-METVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGL 162
+ + +T +E ++Q WQ D ++ PGG++ N+YAF +K F +E GL
Sbjct: 265 SLRLEGQKTAAIEILQQF-DWQVPDWVIVPGGNLGNIYAF----YKGFKXCQELGL 315
>3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center
for structural genomics, JCSG, protein structure INI
PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4}
Length = 379
Score = 28.9 bits (65), Expect = 3.6
Identities = 11/92 (11%), Positives = 30/92 (32%), Gaps = 10/92 (10%)
Query: 184 CAAVCGLGTDNCVEVPSDKRGR-------LIPSELERLVLERKAKG-DIPFFVNCTSGTT 235
V + +R P ++E V + K I + + + +
Sbjct: 92 ILEKGKFAKS--STVLTAERTEDTEAPKPFAPVDIETAVAKIKEDKSAIVYAPHVETSSG 149
Query: 236 VLGAFDPIEEIADICQKYNMWLHVDAAWGGGL 267
++ + + I+ +++ L +D G +
Sbjct: 150 IILSEEYIKALSEAVHSVGGLLVIDCIASGCV 181
>3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural
genomics consortium, pyridoxal phosphate; HET: PLP;
2.30A {Homo sapiens}
Length = 498
Score = 29.0 bits (65), Expect = 4.1
Identities = 14/58 (24%), Positives = 22/58 (37%), Gaps = 2/58 (3%)
Query: 205 RLIPSELERLVLERKAKGDIPFFVNCTSG--TTVLGAFDPIEEIADICQKYNMWLHVD 260
L +EL R V E K D G T + + IE++ + ++L D
Sbjct: 217 ALNVNELRRAVQEAKDHCDPKVLCIINPGNPTGQVQSRKCIEDVIHFAWEEKLFLLAD 274
>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04;
1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A
1o61_A*
Length = 394
Score = 28.4 bits (64), Expect = 6.1
Identities = 8/20 (40%), Positives = 15/20 (75%)
Query: 243 IEEIADICQKYNMWLHVDAA 262
++EI +IC++ ++ L DAA
Sbjct: 138 MDEIVEICKENDIVLIEDAA 157
>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase;
structural genomics, joint center for structural
genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium
sibiricum}
Length = 357
Score = 28.1 bits (63), Expect = 6.3
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 240 FDPIEEIADICQKYNMWLHVDAA 262
F +E I+ C++ + LH+D A
Sbjct: 155 FSELETISRYCRERGIRLHLDGA 177
>3pj0_A LMO0305 protein; structural genomics, joint center for structural
genomics, J protein structure initiative, PSI-biology,
lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes}
Length = 359
Score = 28.1 bits (63), Expect = 7.5
Identities = 8/23 (34%), Positives = 16/23 (69%)
Query: 240 FDPIEEIADICQKYNMWLHVDAA 262
F+ +E+I++ C + + LH+D A
Sbjct: 157 FEELEKISEYCHEQGISLHLDGA 179
>2f5u_A Virion protein UL25; HSV-1, capsid protein, DNA packaging, head
completion, viral protein; 2.10A {Human herpesvirus 1}
Length = 447
Score = 28.1 bits (62), Expect = 8.1
Identities = 14/66 (21%), Positives = 19/66 (28%), Gaps = 10/66 (15%)
Query: 172 FTSDQCHYSVRSCAAVCGLGTDNCVEVPSDKRGRL----------IPSELERLVLERKAK 221
Q HYS CA +C +D R +P L L +
Sbjct: 89 LYVGQRHYSAFECAVLCLYLLYRNTHGAADDSDRAPVTFGDLLGRLPRYLACLAAVIGTE 148
Query: 222 GDIPFF 227
G P +
Sbjct: 149 GGRPQY 154
>1z8m_A Conserved hypothetical protein HP0894; structural genomics,
helicobac pylori, unknown function; NMR {Helicobacter
pylori} SCOP: d.298.1.2
Length = 88
Score = 26.3 bits (58), Expect = 8.3
Identities = 16/64 (25%), Positives = 23/64 (35%), Gaps = 17/64 (26%)
Query: 287 VTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRH 346
+ H L G H K D LL+ YL D+L +R G H
Sbjct: 42 PQFQDHALKGKWKPFRECHIKPDVLLV--------YLVKDDELILLR---------LGSH 84
Query: 347 NDIF 350
+++F
Sbjct: 85 SELF 88
>1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2)
tetramer, riken structural genomics/proteomi initiative,
RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP:
c.67.1.7 PDB: 1wyt_B* 1wyv_B*
Length = 474
Score = 27.9 bits (63), Expect = 9.2
Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 11/66 (16%)
Query: 185 AAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDP-I 243
A++ G E+PS G + L+R + A + T+ T LG F+ I
Sbjct: 173 ASMAGY---QVREIPSGPEGEVDLEALKRELGPHVAALML------TNPNT-LGLFERRI 222
Query: 244 EEIADI 249
EI+ +
Sbjct: 223 LEISRL 228
>3hrd_A Nicotinate dehydrogenase large molybdopterin subunit; selenium
ligand, iron, iron-sulfur, metal-binding,
oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium
barkeri}
Length = 425
Score = 27.5 bits (62), Expect = 9.9
Identities = 7/25 (28%), Positives = 10/25 (40%), Gaps = 1/25 (4%)
Query: 167 GQLVMFTSDQCHYSVRS-CAAVCGL 190
G L + S Q + R A + L
Sbjct: 199 GMLTVVVSTQNPHYDRGEVAGMLAL 223
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.139 0.428
Gapped
Lambda K H
0.267 0.0487 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,592,658
Number of extensions: 467406
Number of successful extensions: 1216
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1141
Number of HSP's successfully gapped: 91
Length of query: 480
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 383
Effective length of database: 3,993,456
Effective search space: 1529493648
Effective search space used: 1529493648
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 59 (27.1 bits)