RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12303
(480 letters)
>d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId:
9823]}
Length = 476
Score = 306 bits (785), Expect = e-100
Identities = 110/488 (22%), Positives = 195/488 (39%), Gaps = 36/488 (7%)
Query: 7 FLKQLVNILLNYIKESNDRNEKVLHFYHPAEMKAMLDLDIPEKGLPLQKLIDDCFTTLKY 66
K++V+ + +Y++ R +V P ++ ++ P++ + ++ D +
Sbjct: 9 RGKEMVDYMADYLEGIEGR--QVYPDVQPGYLRPLIPATAPQEPDTFEDILQDVEKIIMP 66
Query: 67 QV-RTGHPMFMNQLSCGLDVVSMAGEWLIATANTNMFTYEIAPVFILMETVVLEKMRQII 125
V P F +M + L F++ +P +ETV+++ + +++
Sbjct: 67 GVTHWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSWAASPACTELETVMMDWLGKML 126
Query: 126 GWQGG---------DSILAPGGSISNLYAFLAARHKMFPTYKEKGLS----AIKGQLVMF 172
++ S + L A LAAR K+ + A+ +LV +
Sbjct: 127 QLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAY 186
Query: 173 TSDQCHYSVRSCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCTS 232
SDQ H SV + G+ +PSD + + S L+ + KA G IPFFV T
Sbjct: 187 ASDQAHSSVERAGLIGGV---KLKAIPSDGKFAMRASALQEALERDKAAGLIPFFVVATL 243
Query: 233 GTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPH 292
GTT +FD + E+ IC + ++WLHVDAA+ G + ++RH L G+E ADS +NPH
Sbjct: 244 GTTSCCSFDNLLEVGPICHEEDIWLHVDAAYAGSAFICPEFRH-LLNGVEFADSFNFNPH 302
Query: 293 KLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKL 352
K + CS + K+ L ++ YL + + D + GR K+
Sbjct: 303 KWLLVNFDCSAMWVKRRTDLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRRFRSLKM 362
Query: 353 WLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNM 412
W +R G +G + I + ++L+ + P F + E + V F +
Sbjct: 363 WFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQDPR-FEVCAEVTLGLVCFRLKGS----- 416
Query: 413 PHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEGDIDFLLTE 472
+ L R+ A + + L R I S V G +
Sbjct: 417 ---------DGLNEALLERINSARKIHLVPCRLRGQF-VLRFAICSRKVESGHVRLAWEH 466
Query: 473 MDRLGHDL 480
+ L +L
Sbjct: 467 IRGLAAEL 474
>d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB
{Escherichia coli [TaxId: 562]}
Length = 450
Score = 155 bits (393), Expect = 5e-43
Identities = 49/396 (12%), Positives = 104/396 (26%), Gaps = 37/396 (9%)
Query: 89 AGEWLIATANTNMFTYEIAPVFILMETVVLEKMRQIIGWQGGDS-----ILAPGGSISNL 143
+ + + N N E P ++ + + + + G S + +
Sbjct: 70 VHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACM 129
Query: 144 YAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSDKR 203
+A + + + G A + +
Sbjct: 130 LGGMAMKWRWRKRMEAAGKP---TDKPNLVCGPVQICWHKFARYWDVELREIP--MRPGQ 184
Query: 204 GRLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAW 263
+ P + E F V T + ++ +H+DAA
Sbjct: 185 LFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAAS 244
Query: 264 GGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYL 323
GG L + R S++ + HK L C + ++ + L + +YL
Sbjct: 245 GGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDYL 304
Query: 324 FMQDKLYDVRYDTGDKVIQCGRHN-DIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKI 382
G I R + + ++ G EG+ K + ++A Y+ +I
Sbjct: 305 ---------GGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEI 355
Query: 383 KSMPDKFYLIL---EPEMVNVSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMM 439
+ ++ + + V F L R+ G +
Sbjct: 356 AKLGPYEFICTGRPDEGIPAVCFKLKDGEDPGYTLYD-----------LSERLRLRGWQV 404
Query: 440 VGYQ--PLNDLPNFFRNIISSAAVTEGDIDFLLTEM 473
+ R I+ + LL +
Sbjct: 405 PAFTLGGEATDIVVMR-IMCRRGFEMDFAELLLEDY 439
>d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS)
{Methanococcus maripaludis [TaxId: 39152]}
Length = 434
Score = 134 bits (338), Expect = 2e-35
Identities = 45/372 (12%), Positives = 104/372 (27%), Gaps = 51/372 (13%)
Query: 109 VFILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQ 168
+ + +LE + +G +S AAR K
Sbjct: 110 IMYALTNKILESFFKQLGLNVHAIATPISTGMSISLCLSAARKKYGSNV----------- 158
Query: 169 LVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIPFFV 228
+ H S + G+ V R + ++E + + G+ P V
Sbjct: 159 --VIYPYASHKSPIKAVSFVGMNMRLVETVLDGDRVYVPVEDIENAIKKEIELGNRPC-V 215
Query: 229 NCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVT 288
T D I EIA IC+ Y++ ++ A+ + R D+V
Sbjct: 216 LSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQNNYYLEKLKK--AFKYRVDAVV 273
Query: 289 WNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHND 348
+ K + T + ++ + +
Sbjct: 274 SSSDKNLLTPIGGGLVYSTDAEFIKEISLSYP---------------------GRASATP 312
Query: 349 IFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLIL----EPEMVNVSFWY 404
+ + + G + + + + + + + + + K P +S
Sbjct: 313 VVNTLVSLLSMGSKNYLELVKNQKNSKKLLDELLNDLSKKTGGKFLDVESPIASCISVNS 372
Query: 405 LPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISSAAVTEG 464
P + +L L P + G +G + + + ++ V
Sbjct: 373 DPVEIA-----AKLYNLRVTGPRGIKKTDHFGNCYLGTYTHD-----YIVMNAAIGVRTE 422
Query: 465 DIDFLLTEMDRL 476
DI +++++++
Sbjct: 423 DIVNSVSKLEKI 434
>d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 445
Score = 126 bits (316), Expect = 3e-32
Identities = 44/381 (11%), Positives = 107/381 (28%), Gaps = 47/381 (12%)
Query: 107 APVFILMETVVLEKMRQIIG-WQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAI 165
+ + + ++ + ++ G + P + +L P K
Sbjct: 89 SSLLNKITNSLVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLRHKRPKAKY------ 142
Query: 166 KGQLVMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLERKAKGDIP 225
+ S G V R +E ++ +
Sbjct: 143 -----IIWPRIDQKSCFKSMVTAGFEPVVIENVLEGDELRTDLKAVEAK--IQELGPEHI 195
Query: 226 FFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERAD 285
++ T+ D +EE+A IC Y++ V+ A+G + + R D
Sbjct: 196 LCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQSSKCMHLIQ-QGARVGRID 254
Query: 286 SVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGR 345
+ + K + + I + + ++M
Sbjct: 255 AFVQSLDKNFMVPVGGAIIAGFNEPFIQDISKMY---------------------PGRAS 293
Query: 346 HNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKF--YLILEPEMVNVSFW 403
+ + + + G G+ K + E+ Y+ ++K + + L+ P
Sbjct: 294 ASPSLDVLITLLSLGCSGYRKLLKERKEMFVYLSTQLKKLAEAHNERLLQTPHNPISLAM 353
Query: 404 YLPTRVRNMPHE--------KRLNILG-EITPILKGRMMQAGTMMVGYQPLNDLPNFFRN 454
L T + + G P+ + + T ++ P + N
Sbjct: 354 TLKTIDGHHDKAVTQLGSMLFTRQVSGARAVPLGNVQTVSGHTFRGFMSHADNYPCAYLN 413
Query: 455 IISSAAVTEGDIDFLLTEMDR 475
++ + D+D + +D+
Sbjct: 414 AAAAIGMKMQDVDLFIKRLDK 434
>d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain
{Lactobacillus sp., strain 30a [TaxId: 1591]}
Length = 462
Score = 85.8 bits (211), Expect = 1e-18
Identities = 51/353 (14%), Positives = 96/353 (27%), Gaps = 43/353 (12%)
Query: 170 VMFTSDQCHYSVRSCAAVCGLGTDNCVEVPSDKRGRLIPSELERLVLE-----------R 218
++ H SV + A G ++ + G + +
Sbjct: 108 LVLFDRNNHKSVYNSALAMAGGRPVYLQTNRNPYGFIGGIYDSDFDEKKIRELAAKVDPE 167
Query: 219 KAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRL 278
+AK PF + T G E+ ++ D+AW G R+
Sbjct: 168 RAKWKRPFRLAVIQLGTYDGTIYNAHEVVKRIGHLCDYIEFDSAWVGYEQFIPMMRNSSP 227
Query: 279 TGIER------ADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQM------SAEYLFMQ 326
I+ V + HK Q S IH K + ++ LFM
Sbjct: 228 LLIDDLGPEDPGIIVVQSVHKQQAGFSQTSQIHKKDSHIKGQLRYCDHKHFNNSFNLFMS 287
Query: 327 DKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMP 386
+ Y D KLW E K++ + + V + +
Sbjct: 288 TSPFYPMYAALDVNAAMQEGEAGRKLWHDLLITTIE-ARKKLIKAGSMFRPFVPPVVNGK 346
Query: 387 DKFYLILEPEMVNVSFWYLPTRVRN-----MPHEKRLNILGEITPILKGRMMQAGTMMVG 441
E N+ +W + + + G + G
Sbjct: 347 KWEDGDTEDMANNIDYWRFEKGAKWHAYEGYGDNQYYVDPNKFMLTTPGINPETGDYEDF 406
Query: 442 YQPLNDLPNFFRN--------------IISSAAVTEGDIDFLLTEMDRLGHDL 480
P + N+ R+ + + A T ++ L+T++ +L +
Sbjct: 407 GVPATIVANYLRDHGIIPEKSDLNSILFLMTPAETPAKMNNLITQLLQLQRLI 459
>d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola
[TaxId: 549]}
Length = 456
Score = 59.4 bits (143), Expect = 3e-10
Identities = 45/350 (12%), Positives = 94/350 (26%), Gaps = 34/350 (9%)
Query: 133 ILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCHYSVRSCAAVCGLGT 192
+ G + A + FT+ + H V +
Sbjct: 94 VPTHQGRGAENLLSQLAIKP----------GQYVAGNMYFTTTRFHQEKNGATFVDIVRD 143
Query: 193 DNCVEVPSDKRGRLI-PSELERLVLERKAK--GDIPFFVNCTSGTTVLGAFDPIEEIADI 249
+ + I ++L L+ E+ A+ I V + + + ++
Sbjct: 144 EAHDASLNLPFKGDIDLNKLATLIKEKGAENIAYICLAVTVNLAGGQPVSMANMRAVHEM 203
Query: 250 CQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQD 309
Y + + DA K + + + M + T+ K+D
Sbjct: 204 ASTYGIKIFYDATRCVENAYFIKEQEA-----GYENVSIKDIVHEMFSYADGCTMSGKKD 258
Query: 310 GLLI--SCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQ 367
L+ M+ E +F K V Y+ + A E E +
Sbjct: 259 CLVNIGGFLCMNDEEMFSAAKELVVVYEGMPSYGGLAGRDMEAMAIGLREAMQYEYIEHR 318
Query: 368 IDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTRVRNMPHE--KRLNILGEIT 425
+ ++ L + + + I+EP + F ++ + ++ I
Sbjct: 319 VKQVRYLGDKLREAG-------VPIVEPTGGHAVFLDARRFCPHLTQDQFPAQSLAASIY 371
Query: 426 PILKGRMMQAGTMMVGYQPLNDL-----PNFFRNIISSAAVTEGDIDFLL 470
R M+ G + G R I T +D +
Sbjct: 372 METGVRSMERGIVSAGRSKETGENHRPKLETVRLTIPRRVYTYAHMDVVA 421
>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase)
{Proteus vulgaris [TaxId: 585]}
Length = 465
Score = 58.8 bits (141), Expect = 6e-10
Identities = 49/375 (13%), Positives = 114/375 (30%), Gaps = 37/375 (9%)
Query: 119 EKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCH 178
+K +++ + I A G + F K + +F S+
Sbjct: 82 DKAKELFNYDYI--IPAHQGRGAENILFPVLLKY--------KQKEGKAKNPVFISNFHF 131
Query: 179 YSVRSCAAVCGLGTDNCV-------EVPSDKRGRLIPSELERLVLERKAKGDIPFFVNCT 231
+ + + G N V E D +G +L+ + + A + T
Sbjct: 132 DTTAAHVELNGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVT 191
Query: 232 SGTTVLGAFDP--IEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTGIERADSVT- 288
+ ++E+ +I +++ +++ +D+A K R P+ + +
Sbjct: 192 CNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFD 251
Query: 289 WNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHND 348
+ T+ GL+ + E +F + V + +
Sbjct: 252 MYKYADALTMSAKKDPLLNIGGLVAIRD---NEEIFTLARQRCVPMEGFVTYGGLAGRDM 308
Query: 349 IFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPTR 408
+ +E +I ++ L + + + I P + F
Sbjct: 309 AAMVQGLEEGTEEEYLHYRIGQVKYLGDRLR-------EAGIPIQYPTGGHAVFVDCKKL 361
Query: 409 VRNMPHEKRLNILGEITPILKG--RMMQAGTMMVGYQPLNDL-----PNFFRNIISSAAV 461
V +P ++ L+ R ++ G+ ++G P F R I+
Sbjct: 362 VPQIPGDQFPAQAVINALYLESGVRAVEIGSFLLGRDPATGEQKHADMEFMRLTIARRVY 421
Query: 462 TEGDIDFLLTEMDRL 476
T +D++ + L
Sbjct: 422 TNDHMDYIADALIGL 436
>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase)
{Escherichia coli [TaxId: 562]}
Length = 467
Score = 55.7 bits (133), Expect = 7e-09
Identities = 51/382 (13%), Positives = 109/382 (28%), Gaps = 48/382 (12%)
Query: 119 EKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKMFPTYKEKGLSAIKGQLVMFTSDQCH 178
E ++ I G+Q +I G + K +EKGL K + S+
Sbjct: 81 ESVKNIFGYQ--YTIPTHQGRGAEQIYIPVLIKKR---EQEKGLDRSKM---VAFSNYFF 132
Query: 179 YSVRSCAAVCG-----LGTDNCVEVPSD--KRGRLIPSELERLVLERKAKGDIPFFVNCT 231
+ + + + G + + +G LER + E T
Sbjct: 133 DTTQGHSQINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATIT 192
Query: 232 --SGTTVLGAFDPIEEIADICQKYNMWLHVDAAWGGGLLLSKKYRHPRLTG--------- 280
S + ++ + I +KY++ + +D+A K R
Sbjct: 193 SNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRE 252
Query: 281 -IERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDK 339
+ AD + + K + G L+ S ++ + + V +
Sbjct: 253 TYKYADMLAMSAKKDAMVPM----------GGLLCMKDDSFFDVYTECRTLCVVQEGFPT 302
Query: 340 VIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVN 399
+ + +I ++ L + + + V+
Sbjct: 303 YGGLEGGAMERLAVGLYDGMNLDWLAYRIAQVQYLVDGLEEIGVVCQQAGGHAA---FVD 359
Query: 400 VSFWYLPTRVRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDL-----PNFFRN 454
P + L ++ I R ++ G+ ++G P R
Sbjct: 360 AGKLLPHIPADQFPAQALACELYKVAGI---RAVEIGSFLLGRDPKTGKQLPCPAELLRL 416
Query: 455 IISSAAVTEGDIDFLLTEMDRL 476
I A T+ +DF++ +
Sbjct: 417 TIPRATYTQTHMDFIIEAFKHV 438
>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB
{Streptomyces purpurascens [TaxId: 1924]}
Length = 256
Score = 30.7 bits (68), Expect = 0.36
Identities = 28/120 (23%), Positives = 39/120 (32%), Gaps = 15/120 (12%)
Query: 34 HPAEMKAMLDLDIPEKGLPLQKLIDDCFTTLKYQVRTGHPMFMNQLSCGLDVVSMAGEWL 93
HPA+ +A LDL+ L FT L VRTG P + + A L
Sbjct: 1 HPAQQRAWLDLNGAVSHADL------AFTGLLDVVRTGRPAYAGRYGRPFWEDLSADVAL 54
Query: 94 IATANTNMFTYEIAPVFILMETVVLEKMRQIIGWQGGDSILAPGGSISNLYAFLAARHKM 153
+ + M E + E W +L GG + A +A R
Sbjct: 55 ADSFDALMSCD---------EDLAYEAPADAYDWSAVRHVLDVGGGNGGMLAAIALRAPH 105
>d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT
{Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Length = 388
Score = 29.8 bits (66), Expect = 0.66
Identities = 16/73 (21%), Positives = 32/73 (43%), Gaps = 5/73 (6%)
Query: 194 NCVEVPSDKRG--RLIPSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQ 251
VEVP+ + RL EL++ V ++ + + T + +EEIAD
Sbjct: 133 KPVEVPTYEEDEFRLNVDELKKYVTDKTR---ALIINSPCNPTGAVLTKKDLEEIADFVV 189
Query: 252 KYNMWLHVDAAWG 264
++++ + D +
Sbjct: 190 EHDLIVISDEVYE 202
>d1vl2a2 d.210.1.1 (A:174-409) Argininosuccinate synthetase,
C-terminal domain {Thermotoga maritima [TaxId: 2336]}
Length = 236
Score = 28.0 bits (62), Expect = 2.3
Identities = 23/135 (17%), Positives = 40/135 (29%), Gaps = 12/135 (8%)
Query: 208 PSELERLVLERKAKGDIPFFVNCTSGTTVLGAFDPIEEIADICQKYNMWL--HVDAAWGG 265
P E L + + G VN GT + E + ++ K + V+ +
Sbjct: 42 PDEETLLEIHFE-NGIPVKVVNLKDGTEKTDPLELFEYLNEVGAKNGVGRLDMVENRF-I 99
Query: 266 GLLLSKKYRHPRLTGIERADSVTWNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFM 325
G+ Y P T + A L G + +H + D L ++ F
Sbjct: 100 GIKSRGVYETPGATILWIAH------RDLEGITMDKEVMHLR-DMLAPKFAEL-IYNGFW 151
Query: 326 QDKLYDVRYDTGDKV 340
+ K
Sbjct: 152 FSPEMEFLLAAFRKA 166
>d2d5ja1 a.102.1.7 (A:1-377) Unsaturated glucuronyl hydrolase
{Bacillus sp. GL1 [TaxId: 84635]}
Length = 377
Score = 27.7 bits (61), Expect = 3.1
Identities = 18/110 (16%), Positives = 37/110 (33%), Gaps = 13/110 (11%)
Query: 352 LWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKSMPDKFYLILEPEMVNVSFWYLPT---R 408
LWL + GDE + + R + + + +++ ++ F Y + +
Sbjct: 51 LWLCYEYTGDEQYREGAVRTVASFRERLDRFENLDH----------HDIGFLYSLSAKAQ 100
Query: 409 VRNMPHEKRLNILGEITPILKGRMMQAGTMMVGYQPLNDLPNFFRNIISS 458
E + + +L R ++ + P D N R II
Sbjct: 101 WIVEKDESARKLALDAADVLMRRWRADAGIIQAWGPKGDPENGGRIIIDC 150
>d1icxa_ d.129.3.1 (A:) Plant pathogenesis-related protein PR10
{Yellow lupine (Lupinus luteus) [TaxId: 3873]}
Length = 155
Score = 27.2 bits (60), Expect = 3.1
Identities = 14/72 (19%), Positives = 31/72 (43%), Gaps = 7/72 (9%)
Query: 325 MQDKLYDVRYDTGDKVIQCGRHNDIFKLWLQWRAKGDEGFEKQIDRLMELAEYMVKKIKS 384
+ + L + Y++ K++ I K+ +++ KGD E D+ + K I+
Sbjct: 90 LDESLEKISYES--KILPGPDGGSIGKINVKFHTKGDVLSETVRDQAKFKGLGLFKAIEG 147
Query: 385 MPDKFYLILEPE 396
Y++ P+
Sbjct: 148 -----YVLAHPD 154
>d2o6ia1 a.211.1.1 (A:1-453) Hypothetical protein EF1143
{Enterococcus faecalis [TaxId: 1351]}
Length = 453
Score = 27.8 bits (61), Expect = 3.5
Identities = 17/132 (12%), Positives = 43/132 (32%), Gaps = 14/132 (10%)
Query: 27 EKVLHFYHPAEMKAMLDLDIPEKGLPLQKLIDDCFTTLKYQVRTGHP--MFMNQLSCGLD 84
E + H A ++ E L ++ D + + +P + +S +D
Sbjct: 122 EHIFDTNHEAITVQIITSPETEVYQILNRVSADFPEKVASVITKQYPNPQVVQMISSQID 181
Query: 85 VVSMAGEWLIATANTNMFTYEIAPVFILMETVVLEKMRQIIGWQGGDSILAPGGSISNLY 144
M ++L+ A Y + ++ + K G + +
Sbjct: 182 ADRM--DYLLRDAYFTGTEYGTFDLTRILRVIRPYKGGIAFAMNG----------MHAVE 229
Query: 145 AFLAARHKMFPT 156
++ +R++M+
Sbjct: 230 DYIVSRYQMYVQ 241
>d1z8ma1 d.298.1.2 (A:1-88) Hypothetical protein HP0894
{Helicobacter pylori [TaxId: 210]}
Length = 88
Score = 25.9 bits (57), Expect = 3.8
Identities = 16/62 (25%), Positives = 23/62 (37%), Gaps = 17/62 (27%)
Query: 289 WNPHKLMGTLLQCSTIHFKQDGLLISCNQMSAEYLFMQDKLYDVRYDTGDKVIQCGRHND 348
+ H L G H K D LL+ YL D+L +R G H++
Sbjct: 44 FQDHALKGKWKPFRECHIKPDVLLV--------YLVKDDELILLR---------LGSHSE 86
Query: 349 IF 350
+F
Sbjct: 87 LF 88
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.139 0.428
Gapped
Lambda K H
0.267 0.0669 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,867,021
Number of extensions: 90223
Number of successful extensions: 262
Number of sequences better than 10.0: 1
Number of HSP's gapped: 248
Number of HSP's successfully gapped: 20
Length of query: 480
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 391
Effective length of database: 1,185,626
Effective search space: 463579766
Effective search space used: 463579766
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.1 bits)