BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12304
(620 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3AV4|A Chain A, Crystal Structure Of Mouse Dna Methyltransferase 1
pdb|3AV5|A Chain A, Crystal Structure Of Mouse Dna Methyltransferase 1 With
Adohcy
pdb|3AV6|A Chain A, Crystal Structure Of Mouse Dna Methyltransferase 1 With
Adomet
Length = 1330
Score = 392 bits (1007), Expect = e-109, Method: Compositional matrix adjust.
Identities = 217/504 (43%), Positives = 293/504 (58%), Gaps = 68/504 (13%)
Query: 118 LKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQECSVIQDDCNLVLKSL 177
L+ LD+FSGCGGL EG QAG+++ W++E+ A ++ N +V +DCN++LK +
Sbjct: 852 LRTLDVFSGCGGLSEGFHQAGISETLWAIEMWDPAAQAFRLNNPGTTVFTEDCNVLLKLV 911
Query: 178 LKGH-TQHKGVSLPQKHEVDLIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLSFCDLF 236
+ G T G LPQK +V+++ GPPCQGFS +NR SK KN LV +FLS+CD +
Sbjct: 912 MAGEVTNSLGQRLPQKGDVEMLCGGPPCQGFSGMNRFNSRTYSKFKNSLVVSFLSYCDYY 971
Query: 237 QPKYIILENVTGLVHFNKNEILQCIFHCLLKMNYQVTFDVLQSGNYGVAQSRNRVVILAS 296
+P++ +LENV V + ++ +L+ CL++M YQ TF VLQ+G YGVAQ+R R +ILA+
Sbjct: 972 RPRFFLLENVRNFVSYRRSMVLKLTLRCLVRMGYQCTFGVLQAGQYGVAQTRRRAIILAA 1031
Query: 297 KPGYKLPSFPQPLHAFSN---QLFTI--NGNLVANKT--SHAPYRSITVRDAISDLPRVS 349
PG KLP FP+PLH F+ QL + + V+N T S P+R+ITVRD +SDLP +
Sbjct: 1032 APGEKLPLFPEPLHVFAPRACQLSVVVDDKKFVSNITRLSSGPFRTITVRDTMSDLPEIQ 1091
Query: 350 QGA-NCYLFHN-PPKTHFQRMMKDGSRIHDIHINLRELLQDHICKILSPLMEMRIRLIPS 407
GA N + +N P + FQR ++ GS I L+DHICK +SPL+ R+R IP
Sbjct: 1092 NGASNSEIPYNGEPLSWFQRQLR-GSHYQPI-------LRDHICKDMSPLVAARMRHIPL 1143
Query: 408 FPNADWRDLPNICVKLPRGQHSYTEKLKYN-----------AXXXXXXXXXXXXXXXXXX 456
FP +DWRDLPNI V+L G KL+Y
Sbjct: 1144 FPGSDWRDLPNIQVRL--GDGVIAHKLQYTFHDVKNGYSSTGALRGVCSCAEGKACDPES 1201
Query: 457 GQKNTIIPWSLVHTASRNNNWQGVLGRLAWDESFDMTGQKNTIIPWSLVHTASRNNNWQG 516
Q +T+IPW L HT +R+N+W G+ GRL WD F
Sbjct: 1202 RQFSTLIPWCLPHTGNRHNHWAGLYGRLEWD-GF-------------------------- 1234
Query: 517 VLGRLAWDESFDTIVTTPNPLNKQGKILHPEQDRVLTVREYARAQGFPDSYVFRGGICDM 576
F T VT P P+ KQG++LHPEQ RV++VRE AR+QGFPDSY F G I D
Sbjct: 1235 ----------FSTTVTNPEPMGKQGRVLHPEQHRVVSVRECARSQGFPDSYRFFGNILDR 1284
Query: 577 YKQIGNAVPPPLAKAIGYEIIKCI 600
++Q+GNAVPPPLAKAIG EI C+
Sbjct: 1285 HRQVGNAVPPPLAKAIGLEIKLCL 1308
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
Query: 1 MKAHVQWLVRPNDTILGDKIQFDNSTLFLTNACESIDLSVIKKTVCV 47
M H W DT+LG D LFL CE++ LS I V V
Sbjct: 503 MMFHAHWFCAGTDTVLG--ATSDPLELFLVGECENMQLSYIHSKVKV 547
>pdb|3SWR|A Chain A, Structure Of Human Dnmt1 (601-1600) In Complex With
Sinefungin
Length = 1002
Score = 392 bits (1006), Expect = e-109, Method: Compositional matrix adjust.
Identities = 212/505 (41%), Positives = 292/505 (57%), Gaps = 69/505 (13%)
Query: 118 LKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQECSVIQDDCNLVLKSL 177
L+ LD+FSGCGGL EG QAG++ W++E+ A ++ N +V +DCN++LK +
Sbjct: 541 LRTLDVFSGCGGLSEGFHQAGISDTLWAIEMWDPAAQAFRLNNPGSTVFTEDCNILLKLV 600
Query: 178 LKGHTQH-KGVSLPQKHEVDLIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLSFCDLF 236
+ G T + +G LPQK +V+++ GPPCQGFS +NR SK KN LV +FLS+CD +
Sbjct: 601 MAGETTNSRGQRLPQKGDVEMLCGGPPCQGFSGMNRFNSRTYSKFKNSLVVSFLSYCDYY 660
Query: 237 QPKYIILENVTGLVHFNKNEILQCIFHCLLKMNYQVTFDVLQSGNYGVAQSRNRVVILAS 296
+P++ +LENV V F ++ +L+ CL++M YQ TF VLQ+G YGVAQ+R R +ILA+
Sbjct: 661 RPRFFLLENVRNFVSFKRSMVLKLTLRCLVRMGYQCTFGVLQAGQYGVAQTRRRAIILAA 720
Query: 297 KPGYKLPSFPQPLHAFSN---QLFTI--NGNLVANKT--SHAPYRSITVRDAISDLPRVS 349
PG KLP FP+PLH F+ QL + + V+N T S P+R+ITVRD +SDLP V
Sbjct: 721 APGEKLPLFPEPLHVFAPRACQLSVVVDDKKFVSNITRLSSGPFRTITVRDTMSDLPEVR 780
Query: 350 QGANCY--LFHNPPKTHFQRMMKDGSRIHDIHINLRELLQDHICKILSPLMEMRIRLIPS 407
GA+ ++ P++ FQR ++ + +L+DHICK +S L+ R+R IP
Sbjct: 781 NGASALEISYNGEPQSWFQRQLRGA--------QYQPILRDHICKDMSALVAARMRHIPL 832
Query: 408 FPNADWRDLPNICVKLPRGQHSYTEKLKY------------NAXXXXXXXXXXXXXXXXX 455
P +DWRDLPNI V+L G + KL+Y A
Sbjct: 833 APGSDWRDLPNIEVRLSDG--TMARKLRYTHHDRKNGRSSSGALRGVCSCVEAGKACDPA 890
Query: 456 XGQKNTIIPWSLVHTASRNNNWQGVLGRLAWDESFDMTGQKNTIIPWSLVHTASRNNNWQ 515
Q NT+IPW L HT +R+N+W G+ GRL WD F
Sbjct: 891 ARQFNTLIPWCLPHTGNRHNHWAGLYGRLEWD-GF------------------------- 924
Query: 516 GVLGRLAWDESFDTIVTTPNPLNKQGKILHPEQDRVLTVREYARAQGFPDSYVFRGGICD 575
F T VT P P+ KQG++LHPEQ RV++VRE AR+QGFPD+Y G I D
Sbjct: 925 -----------FSTTVTNPEPMGKQGRVLHPEQHRVVSVRECARSQGFPDTYRLFGNILD 973
Query: 576 MYKQIGNAVPPPLAKAIGYEIIKCI 600
++Q+GNAVPPPLAKAIG EI C+
Sbjct: 974 KHRQVGNAVPPPLAKAIGLEIKLCM 998
Score = 32.3 bits (72), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 8/96 (8%)
Query: 4 HVQWLVRPNDTILGDKIQFDNSTLFLTNACESIDLSVIKKTVCVDFV--TNDSSEEEILD 61
H W DT+LG D LFL + CE + LS I V V + + + + E +D
Sbjct: 195 HAHWFCAGTDTVLG--ATSDPLELFLVDECEDMQLSYIHSKVKVIYKAPSENWAMEGGMD 252
Query: 62 NEHEEKDETIYTEYYRKTKDKHFVQ----PNARPLE 93
E + + T +Y+ D+ + + P +P E
Sbjct: 253 PESLLEGDDGKTYFYQLWYDQDYARFESPPKTQPTE 288
>pdb|3PT9|A Chain A, Crystal Structure Of Mouse Dnmt1(731-1602) In The Free
State
pdb|4DA4|A Chain A, Structure Of Mouse Dnmt1 (731-1602) Bound To
Hemimethylated Cpg Dna
pdb|4DA4|B Chain B, Structure Of Mouse Dnmt1 (731-1602) Bound To
Hemimethylated Cpg Dna
Length = 873
Score = 392 bits (1006), Expect = e-109, Method: Compositional matrix adjust.
Identities = 215/504 (42%), Positives = 292/504 (57%), Gaps = 68/504 (13%)
Query: 118 LKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQECSVIQDDCNLVLKSL 177
L+ LD+FSGCGGL EG QAG+++ W++E+ A ++ N +V +DCN++LK +
Sbjct: 413 LRTLDVFSGCGGLSEGFHQAGISETLWAIEMWDPAAQAFRLNNPGTTVFTEDCNVLLKLV 472
Query: 178 LKGH-TQHKGVSLPQKHEVDLIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLSFCDLF 236
+ G T G LPQK +V+++ GPPCQGFS +NR SK KN LV +FLS+CD +
Sbjct: 473 MAGEVTNSLGQRLPQKGDVEMLCGGPPCQGFSGMNRFNSRTYSKFKNSLVVSFLSYCDYY 532
Query: 237 QPKYIILENVTGLVHFNKNEILQCIFHCLLKMNYQVTFDVLQSGNYGVAQSRNRVVILAS 296
+P++ +LENV V + ++ +L+ CL++M YQ TF VLQ+G YGVAQ+R R +ILA+
Sbjct: 533 RPRFFLLENVRNFVSYRRSMVLKLTLRCLVRMGYQCTFGVLQAGQYGVAQTRRRAIILAA 592
Query: 297 KPGYKLPSFPQPLHAFSN---QLFTI--NGNLVANKT--SHAPYRSITVRDAISDLPRVS 349
PG KLP FP+PLH F+ QL + + V+N T S P+R+ITVRD +SDLP +
Sbjct: 593 APGEKLPLFPEPLHVFAPRACQLSVVVDDKKFVSNITRLSSGPFRTITVRDTMSDLPEIQ 652
Query: 350 QGA-NCYL-FHNPPKTHFQRMMKDGSRIHDIHINLRELLQDHICKILSPLMEMRIRLIPS 407
GA N + ++ P + FQR ++ GS I L+DHICK +SPL+ R+R IP
Sbjct: 653 NGASNSEIPYNGEPLSWFQRQLR-GSHYQPI-------LRDHICKDMSPLVAARMRHIPL 704
Query: 408 FPNADWRDLPNICVKLPRGQHSYTEKLKYN-----------AXXXXXXXXXXXXXXXXXX 456
FP +DWRDLPNI V+L G KL+Y
Sbjct: 705 FPGSDWRDLPNIQVRL--GDGVIAHKLQYTFHDVKNGYSSTGALRGVCSCAEGKACDPES 762
Query: 457 GQKNTIIPWSLVHTASRNNNWQGVLGRLAWDESFDMTGQKNTIIPWSLVHTASRNNNWQG 516
Q +T+IPW L HT +R+N+W G+ GRL W
Sbjct: 763 RQFSTLIPWCLPHTGNRHNHWAGLYGRLEW------------------------------ 792
Query: 517 VLGRLAWDESFDTIVTTPNPLNKQGKILHPEQDRVLTVREYARAQGFPDSYVFRGGICDM 576
D F T VT P P+ KQG++LHPEQ RV++VRE AR+QGFPDSY F G I D
Sbjct: 793 -------DGFFSTTVTNPEPMGKQGRVLHPEQHRVVSVRECARSQGFPDSYRFFGNILDR 845
Query: 577 YKQIGNAVPPPLAKAIGYEIIKCI 600
++Q+GNAVPPPLAKAIG EI C+
Sbjct: 846 HRQVGNAVPPPLAKAIGLEIKLCL 869
Score = 32.0 bits (71), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Query: 1 MKAHVQWLVRPNDTILGDKIQFDNSTLFLTNACESIDLSVIKKTVCVDF 49
M H W DT+LG D LFL CE++ LS I V V +
Sbjct: 64 MMFHAHWFCAGTDTVLG--ATSDPLELFLVGECENMQLSYIHSKVKVIY 110
>pdb|3PTA|A Chain A, Crystal Structure Of Human Dnmt1(646-1600) In Complex With
Dna
Length = 956
Score = 391 bits (1005), Expect = e-109, Method: Compositional matrix adjust.
Identities = 211/505 (41%), Positives = 291/505 (57%), Gaps = 69/505 (13%)
Query: 118 LKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQECSVIQDDCNLVLKSL 177
L+ LD+FSGCGGL EG QAG++ W++E+ A ++ N +V +DCN++LK +
Sbjct: 495 LRTLDVFSGCGGLSEGFHQAGISDTLWAIEMWDPAAQAFRLNNPGSTVFTEDCNILLKLV 554
Query: 178 LKGHTQH-KGVSLPQKHEVDLIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLSFCDLF 236
+ G T + +G LPQK +V+++ GPPCQGFS +NR SK KN LV +FLS+CD +
Sbjct: 555 MAGETTNSRGQRLPQKGDVEMLCGGPPCQGFSGMNRFNSRTYSKFKNSLVVSFLSYCDYY 614
Query: 237 QPKYIILENVTGLVHFNKNEILQCIFHCLLKMNYQVTFDVLQSGNYGVAQSRNRVVILAS 296
+P++ +LENV V F ++ +L+ CL++M YQ TF VLQ+G YGVAQ+R R +ILA+
Sbjct: 615 RPRFFLLENVRNFVSFKRSMVLKLTLRCLVRMGYQCTFGVLQAGQYGVAQTRRRAIILAA 674
Query: 297 KPGYKLPSFPQPLHAFSN---QLFTI--NGNLVANKT--SHAPYRSITVRDAISDLPRVS 349
PG KLP FP+PLH F+ QL + + V+N T S P+R+ITVRD +SDLP V
Sbjct: 675 APGEKLPLFPEPLHVFAPRACQLSVVVDDKKFVSNITRLSSGPFRTITVRDTMSDLPEVR 734
Query: 350 QGANCY--LFHNPPKTHFQRMMKDGSRIHDIHINLRELLQDHICKILSPLMEMRIRLIPS 407
GA+ ++ P++ FQR ++ + +L+DHICK +S L+ R+R IP
Sbjct: 735 NGASALEISYNGEPQSWFQRQLRGA--------QYQPILRDHICKDMSALVAARMRHIPL 786
Query: 408 FPNADWRDLPNICVKLPRGQHSYTEKLKY------------NAXXXXXXXXXXXXXXXXX 455
P +DWRDLPNI V+L G + KL+Y A
Sbjct: 787 APGSDWRDLPNIEVRLSDG--TMARKLRYTHHDRKNGRSSSGALRGVCSCVEAGKACDPA 844
Query: 456 XGQKNTIIPWSLVHTASRNNNWQGVLGRLAWDESFDMTGQKNTIIPWSLVHTASRNNNWQ 515
Q NT+IPW L HT +R+N+W G+ GRL W
Sbjct: 845 ARQFNTLIPWCLPHTGNRHNHWAGLYGRLEW----------------------------- 875
Query: 516 GVLGRLAWDESFDTIVTTPNPLNKQGKILHPEQDRVLTVREYARAQGFPDSYVFRGGICD 575
D F T VT P P+ KQG++LHPEQ RV++VRE AR+QGFPD+Y G I D
Sbjct: 876 --------DGFFSTTVTNPEPMGKQGRVLHPEQHRVVSVRECARSQGFPDTYRLFGNILD 927
Query: 576 MYKQIGNAVPPPLAKAIGYEIIKCI 600
++Q+GNAVPPPLAKAIG EI C+
Sbjct: 928 KHRQVGNAVPPPLAKAIGLEIKLCM 952
Score = 32.7 bits (73), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 8/96 (8%)
Query: 4 HVQWLVRPNDTILGDKIQFDNSTLFLTNACESIDLSVIKKTVCVDFV--TNDSSEEEILD 61
H W DT+LG D LFL + CE + LS I V V + + + + E +D
Sbjct: 149 HAHWFCAGTDTVLG--ATSDPLELFLVDECEDMQLSYIHSKVKVIYKAPSENWAMEGGMD 206
Query: 62 NEHEEKDETIYTEYYRKTKDKHFVQ----PNARPLE 93
E + + T +Y+ D+ + + P +P E
Sbjct: 207 PESLLEGDDGKTYFYQLWYDQDYARFESPPKTQPTE 242
>pdb|3PT6|A Chain A, Crystal Structure Of Mouse Dnmt1(650-1602) In Complex With
Dna
pdb|3PT6|B Chain B, Crystal Structure Of Mouse Dnmt1(650-1602) In Complex With
Dna
Length = 954
Score = 390 bits (1003), Expect = e-109, Method: Compositional matrix adjust.
Identities = 215/504 (42%), Positives = 292/504 (57%), Gaps = 68/504 (13%)
Query: 118 LKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQECSVIQDDCNLVLKSL 177
L+ LD+FSGCGGL EG QAG+++ W++E+ A ++ N +V +DCN++LK +
Sbjct: 494 LRTLDVFSGCGGLSEGFHQAGISETLWAIEMWDPAAQAFRLNNPGTTVFTEDCNVLLKLV 553
Query: 178 LKGH-TQHKGVSLPQKHEVDLIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLSFCDLF 236
+ G T G LPQK +V+++ GPPCQGFS +NR SK KN LV +FLS+CD +
Sbjct: 554 MAGEVTNSLGQRLPQKGDVEMLCGGPPCQGFSGMNRFNSRTYSKFKNSLVVSFLSYCDYY 613
Query: 237 QPKYIILENVTGLVHFNKNEILQCIFHCLLKMNYQVTFDVLQSGNYGVAQSRNRVVILAS 296
+P++ +LENV V + ++ +L+ CL++M YQ TF VLQ+G YGVAQ+R R +ILA+
Sbjct: 614 RPRFFLLENVRNFVSYRRSMVLKLTLRCLVRMGYQCTFGVLQAGQYGVAQTRRRAIILAA 673
Query: 297 KPGYKLPSFPQPLHAFSN---QLFTI--NGNLVANKT--SHAPYRSITVRDAISDLPRVS 349
PG KLP FP+PLH F+ QL + + V+N T S P+R+ITVRD +SDLP +
Sbjct: 674 APGEKLPLFPEPLHVFAPRACQLSVVVDDKKFVSNITRLSSGPFRTITVRDTMSDLPEIQ 733
Query: 350 QGA-NCYL-FHNPPKTHFQRMMKDGSRIHDIHINLRELLQDHICKILSPLMEMRIRLIPS 407
GA N + ++ P + FQR ++ GS I L+DHICK +SPL+ R+R IP
Sbjct: 734 NGASNSEIPYNGEPLSWFQRQLR-GSHYQPI-------LRDHICKDMSPLVAARMRHIPL 785
Query: 408 FPNADWRDLPNICVKLPRGQHSYTEKLKYN-----------AXXXXXXXXXXXXXXXXXX 456
FP +DWRDLPNI V+L G KL+Y
Sbjct: 786 FPGSDWRDLPNIQVRL--GDGVIAHKLQYTFHDVKNGYSSTGALRGVCSCAEGKACDPES 843
Query: 457 GQKNTIIPWSLVHTASRNNNWQGVLGRLAWDESFDMTGQKNTIIPWSLVHTASRNNNWQG 516
Q +T+IPW L HT +R+N+W G+ GRL W
Sbjct: 844 RQFSTLIPWCLPHTGNRHNHWAGLYGRLEW------------------------------ 873
Query: 517 VLGRLAWDESFDTIVTTPNPLNKQGKILHPEQDRVLTVREYARAQGFPDSYVFRGGICDM 576
D F T VT P P+ KQG++LHPEQ RV++VRE AR+QGFPDSY F G I D
Sbjct: 874 -------DGFFSTTVTNPEPMGKQGRVLHPEQHRVVSVRECARSQGFPDSYRFFGNILDR 926
Query: 577 YKQIGNAVPPPLAKAIGYEIIKCI 600
++Q+GNAVPPPLAKAIG EI C+
Sbjct: 927 HRQVGNAVPPPLAKAIGLEIKLCL 950
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Query: 1 MKAHVQWLVRPNDTILGDKIQFDNSTLFLTNACESIDLSVIKKTVCVDF 49
M H W DT+LG D LFL CE++ LS I V V +
Sbjct: 145 MMFHAHWFCAGTDTVLG--ATSDPLELFLVGECENMQLSYIHSKVKVIY 191
>pdb|4FT2|A Chain A, Crystal Structure Of Zea Mays Zmet2 In Complex
H3(1-15)k9me2 Peptide And Sah
pdb|4FT2|B Chain B, Crystal Structure Of Zea Mays Zmet2 In Complex
H3(1-15)k9me2 Peptide And Sah
pdb|4FT4|B Chain B, Crystal Structure Of Zea Mays Zmet2 In Complex
H3(1-32)k9me2 Peptide And Sah
pdb|4FT4|A Chain A, Crystal Structure Of Zea Mays Zmet2 In Complex
H3(1-32)k9me2 Peptide And Sah
Length = 784
Score = 107 bits (268), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 80/269 (29%), Positives = 127/269 (47%), Gaps = 19/269 (7%)
Query: 169 DCNLVLKSLLKGHTQHKGVSLPQKHEVDLIVAGPPCQGFSQLNRARELEK--SKLKNGLV 226
DC ++ ++ HK LP +VD+I GPPCQG S NR R ++ KN +
Sbjct: 356 DCPQKIREFVQ--EGHKRKILPLPGDVDVICGGPPCQGISGFNRYRNRDEPLKDEKNKQM 413
Query: 227 FTFLSFCDLFQPKYIILENVTGLVHFNKNEILQCIFHCLLKMNYQVTFDVLQSGNYGVAQ 286
TF+ +PKY+++ENV ++ F + + CL+ M YQ ++ +G YG+ Q
Sbjct: 414 VTFMDIVAYLKPKYVLMENVVDILKFADGYLGKYALSCLVAMKYQARLGMMVAGCYGLPQ 473
Query: 287 SRNRVVILASKPGYKLPSFPQPLHAFSNQLFTING---NLVANKTSHAPY--RSITVRDA 341
R RV + + LP +P P + + N +VA + P +++ + DA
Sbjct: 474 FRMRVFLWGALSSMVLPKYPLPTYDVVVRGGAPNAFSQCMVAYDETQKPSLKKALLLGDA 533
Query: 342 ISDLPRVS--QGANCYLFHNPPKTHFQRMMKDGSRIHDIHINLRE-------LLQDHICK 392
ISDLP+V Q + + PKT FQR ++ SR + + E L DH
Sbjct: 534 ISDLPKVQNHQPNDVMEYGGSPKTEFQRYIR-LSRKDMLDWSFGEGAGPDEGKLLDHQPL 592
Query: 393 ILSPLMEMRIRLIPSFPNADWRDLPNICV 421
L+ R++ IP A++RDL + V
Sbjct: 593 RLNNDDYERVQQIPVKKGANFRDLKGVRV 621
Score = 85.9 bits (211), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 45/86 (52%), Positives = 56/86 (65%), Gaps = 6/86 (6%)
Query: 518 LGRLAWDESFDTIVTTPNPLNKQGKILHPEQDRVLTVREYARAQGFPDSYVFRGGICDMY 577
GRL WDE+ T+VT P N+ I+HP Q RVLT+RE AR QGFPD Y G I + Y
Sbjct: 661 FGRLWWDETVPTVVTRAEPHNQV--IIHPTQARVLTIRENARLQGFPDYYRLFGPIKEKY 718
Query: 578 KQIGNAVPPPLAKAIGYEIIKCIGNA 603
Q+GNAV P+A+A+GY C+G A
Sbjct: 719 IQVGNAVAVPVARALGY----CLGQA 740
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Query: 112 MPLDTPLKCLDLFSGCGGLMEGLC 135
MP T LDL+SGCGG+ GLC
Sbjct: 208 MPTRT-ATLLDLYSGCGGMSTGLC 230
>pdb|4FSX|A Chain A, Crystal Structure Of Se-Substituted Zea Mays Zmet2 In
Complex With Sah
pdb|4FSX|B Chain B, Crystal Structure Of Se-Substituted Zea Mays Zmet2 In
Complex With Sah
Length = 784
Score = 100 bits (248), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 79/269 (29%), Positives = 120/269 (44%), Gaps = 19/269 (7%)
Query: 169 DCNLVLKSLLKGHTQHKGVSLPQKHEVDLIVAGPPCQGFSQLNRARELEK--SKLKNGLV 226
DC ++ ++ HK LP +VD+I GPPCQG S NR R ++ KN
Sbjct: 356 DCPQKIREFVQ--EGHKRKILPLPGDVDVICGGPPCQGISGFNRYRNRDEPLKDEKNKQX 413
Query: 227 FTFLSFCDLFQPKYIILENVTGLVHFNKNEILQCIFHCLLKMNYQVTFDVLQSGNYGVAQ 286
TF +PKY++ ENV ++ F + + CL+ YQ +G YG+ Q
Sbjct: 414 VTFXDIVAYLKPKYVLXENVVDILKFADGYLGKYALSCLVAXKYQARLGXXVAGCYGLPQ 473
Query: 287 SRNRVVILASKPGYKLPSFPQPLHAFSNQLFTING---NLVANKTSHAPY--RSITVRDA 341
R RV + + LP +P P + + N VA + P +++ + DA
Sbjct: 474 FRXRVFLWGALSSXVLPKYPLPTYDVVVRGGAPNAFSQCXVAYDETQKPSLKKALLLGDA 533
Query: 342 ISDLPRVS--QGANCYLFHNPPKTHFQRMMKDGSRIHDIHINLRE-------LLQDHICK 392
ISDLP+V Q + + PKT FQR ++ SR + + E L DH
Sbjct: 534 ISDLPKVQNHQPNDVXEYGGSPKTEFQRYIR-LSRKDXLDWSFGEGAGPDEGKLLDHQPL 592
Query: 393 ILSPLMEMRIRLIPSFPNADWRDLPNICV 421
L+ R++ IP A++RDL + V
Sbjct: 593 RLNNDDYERVQQIPVKKGANFRDLKGVRV 621
Score = 85.5 bits (210), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 45/86 (52%), Positives = 56/86 (65%), Gaps = 6/86 (6%)
Query: 518 LGRLAWDESFDTIVTTPNPLNKQGKILHPEQDRVLTVREYARAQGFPDSYVFRGGICDMY 577
GRL WDE+ T+VT P N+ I+HP Q RVLT+RE AR QGFPD Y G I + Y
Sbjct: 661 FGRLWWDETVPTVVTRAEPHNQV--IIHPTQARVLTIRENARLQGFPDYYRLFGPIKEKY 718
Query: 578 KQIGNAVPPPLAKAIGYEIIKCIGNA 603
Q+GNAV P+A+A+GY C+G A
Sbjct: 719 IQVGNAVAVPVARALGY----CLGQA 740
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 11/15 (73%), Positives = 12/15 (80%)
Query: 121 LDLFSGCGGLMEGLC 135
LDL+SGCGG GLC
Sbjct: 216 LDLYSGCGGXSTGLC 230
>pdb|3G7U|A Chain A, Crystal Structure Of Putative Dna Modification
Methyltransferase Encoded Within Prophage Cp-933r
(E.Coli)
Length = 376
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 90/186 (48%), Gaps = 13/186 (6%)
Query: 118 LKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQECSVIQDDCNLVLKSL 177
L +DLFSG GGL G +AG +VE+++ ++ NF +Q+D +L+ +
Sbjct: 3 LNVIDLFSGVGGLSLGAARAGFDVKM-AVEIDQHAINTHAINFPRSLHVQEDVSLLNAEI 61
Query: 178 LKGHTQHKGVSLPQKHEVDLIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLSFCDLFQ 237
+KG ++ +P +D I+ GPPCQGFS + + + +N L F Q
Sbjct: 62 IKGFFKN---DMP----IDGIIGGPPCQGFSSIGKGNPDDS---RNQLYMHFYRLVSELQ 111
Query: 238 PKYIILENVTGLVHFNKNEILQCIFHCLLKMNYQVTFDV-LQSGNYGVAQSRNRVVILAS 296
P + + ENV G++ + I F+ L+ +Y + + +++ +YG R R +
Sbjct: 112 PLFFLAENVPGIMQEKYSGIRNKAFN-LVSGDYDILDPIKVKASDYGAPTIRTRYFFIGV 170
Query: 297 KPGYKL 302
K KL
Sbjct: 171 KKSLKL 176
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 31/49 (63%)
Query: 544 LHPEQDRVLTVREYARAQGFPDSYVFRGGICDMYKQIGNAVPPPLAKAI 592
+HP RV+T RE AR QGFPD + F ++QIGN+V P +A+ I
Sbjct: 311 IHPYHPRVITPREAARLQGFPDWFRFHVTKWHSFRQIGNSVSPIVAEYI 359
>pdb|1DCT|A Chain A, Dna (Cytosine-5) Methylase From Haeiii Covalently Bound To
Dna
pdb|1DCT|B Chain B, Dna (Cytosine-5) Methylase From Haeiii Covalently Bound To
Dna
Length = 324
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 81/178 (45%), Gaps = 18/178 (10%)
Query: 118 LKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQECSVIQDDCNLVLKSL 177
+ + LFSG GGL G +AG C + E ++S +Y++N L
Sbjct: 1 MNLISLFSGAGGLDLGFQKAGFRIIC-ANEYDKSIWKTYESNHSA-------------KL 46
Query: 178 LKGHTQHKGVSLPQKHEVDLIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLSFCDLFQ 237
+KG +S + + D I+ GPPCQ +S+ R ++ + K L + ++ +
Sbjct: 47 IKGDISK--ISSDEFPKCDGIIGGPPCQSWSEGGSLRGIDDPRGK--LFYEYIRILKQKK 102
Query: 238 PKYIILENVTGLVHFNKNEILQCIFHCLLKMNYQVTFDVLQSGNYGVAQSRNRVVILA 295
P + + ENV G++ N+ +Q Y V +L + +YGVAQ R RV +
Sbjct: 103 PIFFLAENVKGMMAQRHNKAVQEFIQEFDNAGYDVHIILLNANDYGVAQDRKRVFYIG 160
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/56 (55%), Positives = 36/56 (64%), Gaps = 5/56 (8%)
Query: 550 RVLTVREYARAQGFPDSYVFR-GGICDMYKQIGNAVPPPLAKAIGYEIIKCIGNAV 604
R LTVRE AR QGFPD ++F + D YK IGNAVP LA YEI K I +A+
Sbjct: 273 RRLTVRECARVQGFPDDFIFHYESLNDGYKMIGNAVPVNLA----YEIAKTIKSAL 324
>pdb|1SVU|A Chain A, Structure Of The Q237w Mutant Of Hhai Dna
Methyltransferase: An Insight Into Protein-Protein
Interactions
pdb|1SVU|B Chain B, Structure Of The Q237w Mutant Of Hhai Dna
Methyltransferase: An Insight Into Protein-Protein
Interactions
Length = 327
Score = 65.9 bits (159), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 86/197 (43%), Gaps = 21/197 (10%)
Query: 116 TPLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQECSVIQDDCNLVLK 175
T L+ +DLF+G GG L G A+ +S E ++ Y+ NF E + D V +
Sbjct: 10 TGLRFIDLFAGLGGFRLALESCG-AECVYSNEWDKYAQEVYEMNFGEKP--EGDITQVNE 66
Query: 176 SLLKGHTQHKGVSLPQKHEVDLIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLSFCDL 235
+ H D++ AG PCQ FS + + E S+ L F
Sbjct: 67 KTIPDH--------------DILCAGFPCQAFSISGKQKGFEDSR--GTLFFDIARIVRE 110
Query: 236 FQPKYIILENVTGLVHFNKNEILQCIFHCLLKMNYQVTFDVLQSGNYGVAQSRNRVVILA 295
+PK + +ENV + L+ + + + +++Y VL + +YG+ Q R R+ ++
Sbjct: 111 KKPKVVFMENVKNFASHDNGNTLEVVKNTMNELDYSFHAKVLNALDYGIPQKRERIYMIC 170
Query: 296 SKPGYKLPS--FPQPLH 310
+ + + FP+P
Sbjct: 171 FRNDLNIQNFQFPKPFE 187
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 39/89 (43%), Gaps = 8/89 (8%)
Query: 516 GVLGRLAWDE---SFDTIVTTPNP-----LNKQGKILHPEQDRVLTVREYARAQGFPDSY 567
G++G+ W E S I T + K G L + R L RE AR G+PDSY
Sbjct: 230 GIVGKGGWGERIYSTRGIAITLSAYGGGIFAKTGGYLVNGKTRKLHPRECARVMGYPDSY 289
Query: 568 VFRGGICDMYKQIGNAVPPPLAKAIGYEI 596
YKQ GN+V + + I Y I
Sbjct: 290 KVHPSTSQAYKQFGNSVVINVLQYIAYNI 318
>pdb|2UYH|A Chain A, Hhai Dna Methyltransferase S87q-Q237s Mutant Complex With
13mer Gcgc-Gmgc Oligonucleotide And Sah
Length = 327
Score = 65.5 bits (158), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 86/197 (43%), Gaps = 21/197 (10%)
Query: 116 TPLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQECSVIQDDCNLVLK 175
T L+ +DLF+G GG L G A+ +S E ++ Y+ NF E + D V +
Sbjct: 10 TGLRFIDLFAGLGGFRLALESCG-AECVYSNEWDKYAQEVYEMNFGEKP--EGDITQVNE 66
Query: 176 SLLKGHTQHKGVSLPQKHEVDLIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLSFCDL 235
+ H D++ AG PCQ FS + + E S+ L F
Sbjct: 67 KTIPDH--------------DILCAGFPCQAFSIQGKQKGFEDSR--GTLFFDIARIVRE 110
Query: 236 FQPKYIILENVTGLVHFNKNEILQCIFHCLLKMNYQVTFDVLQSGNYGVAQSRNRVVILA 295
+PK + +ENV + L+ + + + +++Y VL + +YG+ Q R R+ ++
Sbjct: 111 KKPKVVFMENVKNFASHDNGNTLEVVKNTMNELDYSFHAKVLNALDYGIPQKRERIYMIC 170
Query: 296 SKPGYKLPS--FPQPLH 310
+ + + FP+P
Sbjct: 171 FRNDLNIQNFQFPKPFE 187
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 28/58 (48%)
Query: 539 KQGKILHPEQDRVLTVREYARAQGFPDSYVFRGGICDMYKQIGNAVPPPLAKAIGYEI 596
K G L + R L RE AR G+PDSY YKQ GN+V + + I Y I
Sbjct: 261 KTGGYLVNGKTRKLHPRECARVMGYPDSYKVHPSTSQAYKQFGNSVVINVLQYIAYNI 318
>pdb|1MHT|A Chain A, Covalent Ternary Structure Of Hhai Methyltransferase, Dna
And S-Adenosyl-L-Homocysteine
pdb|3MHT|A Chain A, Ternary Structure Of Hhai Methyltransferase With
Unmodified Dna And Adohcy
pdb|4MHT|A Chain A, Ternary Structure Of Hhai Methyltransferase With Native
Dna And Adohcy
pdb|5MHT|A Chain A, Ternary Structure Of Hhai Methyltransferase With
Hemimethylated Dna And Adohcy
pdb|6MHT|A Chain A, Ternary Structure Of Hhai Methyltransferase With Adohcy
And Dna Containing 4'-Thio-2'deoxycytidine At The Target
pdb|7MHT|A Chain A, Cytosine-Specific Methyltransferase HhaiDNA COMPLEX
pdb|8MHT|A Chain A, Cytosine-Specific Methyltransferase HhaiDNA COMPLEX
pdb|9MHT|A Chain A, Cytosine-specific Methyltransferase Hhai/dna Complex
pdb|10MH|A Chain A, Ternary Structure Of Hhai Methyltransferase With Adohcy
And Hemimethylated Dna Containing
5,6-Dihydro-5-Azacytosine At The Target
pdb|2HMY|B Chain B, Binary Complex Of Hhai Methyltransferase With Adomet
Formed In The Presence Of A Short Nonpsecific Dna
Oligonucleotide
pdb|1M0E|A Chain A, Zebularine: A Novel Dna Methylation Inhibitor That Forms A
Covalent Complex With Dna Methyltransferase
pdb|1SKM|A Chain A, Hhai Methyltransferase In Complex With Dna Containing An
Abasic South Carbocyclic Sugar At Its Target Site
pdb|2C7O|A Chain A, Hhai Dna Methyltransferase Complex With 13mer
Oligonucleotide Containing 2-Aminopurine Adjacent To The
Target Base (Pcgc:gmgc) And Sah
pdb|2C7P|A Chain A, Hhai Dna Methyltransferase Complex With Oligonucleotide
Containing 2-Aminopurine Opposite To The Target Base (
Gcgc:gmpc) And Sah
pdb|2C7Q|A Chain A, Hhai Dna Methyltransferase Complex With Oligonucleotide
Containing 2-Aminopurine Outside The Recognition
Sequence (Paired With G) And Sah
pdb|2HR1|A Chain A, Ternary Structure Of Wt M.hhai C5-cytosine Dna
Methyltransferase With Unmodified Dna And Adohcy
pdb|1HMY|A Chain A, Crystal Structure Of The Hhai Dna Methyltransferase
Complexed With S- Adenosyl-L-Methionine
pdb|3EEO|A Chain A, M. Hhai Co-Crystallized With Synthetic Dsdna Containing A
Propane Diol In Place Of The Deoxycytidine Residue
Targeted For Methylation
Length = 327
Score = 65.5 bits (158), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 86/197 (43%), Gaps = 21/197 (10%)
Query: 116 TPLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQECSVIQDDCNLVLK 175
T L+ +DLF+G GG L G A+ +S E ++ Y+ NF E + D V +
Sbjct: 10 TGLRFIDLFAGLGGFRLALESCG-AECVYSNEWDKYAQEVYEMNFGEKP--EGDITQVNE 66
Query: 176 SLLKGHTQHKGVSLPQKHEVDLIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLSFCDL 235
+ H D++ AG PCQ FS + + E S+ L F
Sbjct: 67 KTIPDH--------------DILCAGFPCQAFSISGKQKGFEDSR--GTLFFDIARIVRE 110
Query: 236 FQPKYIILENVTGLVHFNKNEILQCIFHCLLKMNYQVTFDVLQSGNYGVAQSRNRVVILA 295
+PK + +ENV + L+ + + + +++Y VL + +YG+ Q R R+ ++
Sbjct: 111 KKPKVVFMENVKNFASHDNGNTLEVVKNTMNELDYSFHAKVLNALDYGIPQKRERIYMIC 170
Query: 296 SKPGYKLPS--FPQPLH 310
+ + + FP+P
Sbjct: 171 FRNDLNIQNFQFPKPFE 187
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 28/58 (48%)
Query: 539 KQGKILHPEQDRVLTVREYARAQGFPDSYVFRGGICDMYKQIGNAVPPPLAKAIGYEI 596
K G L + R L RE AR G+PDSY YKQ GN+V + + I Y I
Sbjct: 261 KTGGYLVNGKTRKLHPRECARVMGYPDSYKVHPSTSQAYKQFGNSVVINVLQYIAYNI 318
>pdb|1FJX|A Chain A, Structure Of Ternary Complex Of Hhai Methyltransferase
Mutant (T250g) In Complex With Dna And Adohcy
pdb|2C7R|A Chain A, Hhai Dna Methyltransferase (T250g Mutant) Complex With
Oligonucleotide Containing 2-Aminopurine As A Target
Base (Gpgc:gmgc) And Sah
Length = 327
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 86/197 (43%), Gaps = 21/197 (10%)
Query: 116 TPLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQECSVIQDDCNLVLK 175
T L+ +DLF+G GG L G A+ +S E ++ Y+ NF E + D V +
Sbjct: 10 TGLRFIDLFAGLGGFRLALESCG-AECVYSNEWDKYAQEVYEMNFGEKP--EGDITQVNE 66
Query: 176 SLLKGHTQHKGVSLPQKHEVDLIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLSFCDL 235
+ H D++ AG PCQ FS + + E S+ L F
Sbjct: 67 KTIPDH--------------DILCAGFPCQAFSISGKQKGFEDSR--GTLFFDIARIVRE 110
Query: 236 FQPKYIILENVTGLVHFNKNEILQCIFHCLLKMNYQVTFDVLQSGNYGVAQSRNRVVILA 295
+PK + +ENV + L+ + + + +++Y VL + +YG+ Q R R+ ++
Sbjct: 111 KKPKVVFMENVKNFASHDNGNTLEVVKNTMNELDYSFHAKVLNALDYGIPQKRERIYMIC 170
Query: 296 SKPGYKLPS--FPQPLH 310
+ + + FP+P
Sbjct: 171 FRNDLNIQNFQFPKPFE 187
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 28/58 (48%)
Query: 539 KQGKILHPEQDRVLTVREYARAQGFPDSYVFRGGICDMYKQIGNAVPPPLAKAIGYEI 596
K G L + R L RE AR G+PDSY YKQ GN+V + + I Y I
Sbjct: 261 KTGGYLVNGKTRKLHPRECARVMGYPDSYKVHPSTSQAYKQFGNSVVINVLQYIAYNI 318
>pdb|2I9K|A Chain A, Engineered Extrahelical Base Destabilization Enhances
Sequence Discrimination Of Dna Methyltransferase M.Hhai
Length = 327
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 86/197 (43%), Gaps = 21/197 (10%)
Query: 116 TPLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQECSVIQDDCNLVLK 175
T L+ +DLF+G GG L G A+ +S E ++ Y+ NF E + D V +
Sbjct: 10 TGLRFIDLFAGLGGFRLALESCG-AECVYSNEWDKYAQEVYEMNFGEKP--EGDITQVNE 66
Query: 176 SLLKGHTQHKGVSLPQKHEVDLIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLSFCDL 235
+ H D++ AG PCQ FS + + E S+ L F
Sbjct: 67 KTIPDH--------------DILCAGFPCQAFSISGKQKGFEDSR--GTLFFDIARIVRE 110
Query: 236 FQPKYIILENVTGLVHFNKNEILQCIFHCLLKMNYQVTFDVLQSGNYGVAQSRNRVVILA 295
+PK + +ENV + L+ + + + +++Y VL + +YG+ Q R R+ ++
Sbjct: 111 KKPKVVFMENVKNAASHDNGNTLEVVKNTMNELDYSFHAKVLNALDYGIPQKRERIYMIC 170
Query: 296 SKPGYKLPS--FPQPLH 310
+ + + FP+P
Sbjct: 171 FRNDLNIQNFQFPKPFE 187
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 28/58 (48%)
Query: 539 KQGKILHPEQDRVLTVREYARAQGFPDSYVFRGGICDMYKQIGNAVPPPLAKAIGYEI 596
K G L + R L RE AR G+PDSY YKQ GN+V + + I Y I
Sbjct: 261 KTGGYLVNGKTRKLHPRECARVMGYPDSYKVHPSTSQAYKQFGNSVVINVLQYIAYNI 318
>pdb|3UBT|Y Chain Y, Crystal Structure Of C71s Mutant Of Dna Cytosine-5
Methyltransferase M.Haeiii Bound To Dna
pdb|3UBT|A Chain A, Crystal Structure Of C71s Mutant Of Dna Cytosine-5
Methyltransferase M.Haeiii Bound To Dna
pdb|3UBT|B Chain B, Crystal Structure Of C71s Mutant Of Dna Cytosine-5
Methyltransferase M.Haeiii Bound To Dna
Length = 331
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 80/178 (44%), Gaps = 18/178 (10%)
Query: 118 LKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQECSVIQDDCNLVLKSL 177
+ + LFSG GGL G +AG C + E ++S +Y++N L
Sbjct: 1 MNLISLFSGAGGLDLGFQKAGFRIIC-ANEYDKSIWKTYESNHSA-------------KL 46
Query: 178 LKGHTQHKGVSLPQKHEVDLIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLSFCDLFQ 237
+KG +S + + D I+ GPP Q +S+ R ++ + K L + ++ +
Sbjct: 47 IKGDISK--ISSDEFPKCDGIIGGPPSQSWSEGGSLRGIDDPRGK--LFYEYIRILKQKK 102
Query: 238 PKYIILENVTGLVHFNKNEILQCIFHCLLKMNYQVTFDVLQSGNYGVAQSRNRVVILA 295
P + + ENV G++ N+ +Q Y V +L + +YGVAQ R RV +
Sbjct: 103 PIFFLAENVKGMMAQRHNKAVQEFIQEFDNAGYDVHIILLNANDYGVAQDRKRVFYIG 160
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/56 (55%), Positives = 36/56 (64%), Gaps = 5/56 (8%)
Query: 550 RVLTVREYARAQGFPDSYVFR-GGICDMYKQIGNAVPPPLAKAIGYEIIKCIGNAV 604
R LTVRE AR QGFPD ++F + D YK IGNAVP LA YEI K I +A+
Sbjct: 273 RRLTVRECARVQGFPDDFIFHYESLNDGYKMIGNAVPVNLA----YEIAKTIKSAL 324
>pdb|2ZCJ|A Chain A, Ternary Structure Of The Glu119gln M.Hhai, C5-Cytosine Dna
Methyltransferase, With Unmodified Dna And Adohcy
Length = 327
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 86/197 (43%), Gaps = 21/197 (10%)
Query: 116 TPLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQECSVIQDDCNLVLK 175
T L+ +DLF+G GG L G A+ +S E ++ Y+ NF E + D V +
Sbjct: 10 TGLRFIDLFAGLGGFRLALESCG-AECVYSNEWDKYAQEVYEMNFGEKP--EGDITQVNE 66
Query: 176 SLLKGHTQHKGVSLPQKHEVDLIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLSFCDL 235
+ H D++ AG PCQ FS + + E S+ L F
Sbjct: 67 KTIPDH--------------DILCAGFPCQAFSISGKQKGFEDSR--GTLFFDIARIVRE 110
Query: 236 FQPKYIILENVTGLVHFNKNEILQCIFHCLLKMNYQVTFDVLQSGNYGVAQSRNRVVILA 295
+PK + ++NV + L+ + + + +++Y VL + +YG+ Q R R+ ++
Sbjct: 111 KKPKVVFMQNVKNFASHDNGNTLEVVKNTMNELDYSFHAKVLNALDYGIPQKRERIYMIC 170
Query: 296 SKPGYKLPS--FPQPLH 310
+ + + FP+P
Sbjct: 171 FRNDLNIQNFQFPKPFE 187
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 28/58 (48%)
Query: 539 KQGKILHPEQDRVLTVREYARAQGFPDSYVFRGGICDMYKQIGNAVPPPLAKAIGYEI 596
K G L + R L RE AR G+PDSY YKQ GN+V + + I Y I
Sbjct: 261 KTGGYLVNGKTRKLHPRECARVMGYPDSYKVHPSTSQAYKQFGNSVVINVLQYIAYNI 318
>pdb|2Z6U|A Chain A, Ternary Structure Of The Glu119ala M.Hhai, C5-Cytosine Dna
Methyltransferase, With Unmodified Dna And Adohcy
Length = 327
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 85/197 (43%), Gaps = 21/197 (10%)
Query: 116 TPLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQECSVIQDDCNLVLK 175
T L+ +DLF+G GG L G A+ +S E ++ Y+ NF E + D V +
Sbjct: 10 TGLRFIDLFAGLGGFRLALESCG-AECVYSNEWDKYAQEVYEMNFGEKP--EGDITQVNE 66
Query: 176 SLLKGHTQHKGVSLPQKHEVDLIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLSFCDL 235
+ H D++ AG PCQ FS + + E S + L F
Sbjct: 67 KTIPDH--------------DILCAGFPCQAFSISGKQKGFEDS--RGTLFFDIARIVRE 110
Query: 236 FQPKYIILENVTGLVHFNKNEILQCIFHCLLKMNYQVTFDVLQSGNYGVAQSRNRVVILA 295
+PK + + NV + L+ + + + +++Y VL + +YG+ Q R R+ ++
Sbjct: 111 KKPKVVFMANVKNFASHDNGNTLEVVKNTMNELDYSFHAKVLNALDYGIPQKRERIYMIC 170
Query: 296 SKPGYKLPS--FPQPLH 310
+ + + FP+P
Sbjct: 171 FRNDLNIQNFQFPKPFE 187
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 28/58 (48%)
Query: 539 KQGKILHPEQDRVLTVREYARAQGFPDSYVFRGGICDMYKQIGNAVPPPLAKAIGYEI 596
K G L + R L RE AR G+PDSY YKQ GN+V + + I Y I
Sbjct: 261 KTGGYLVNGKTRKLHPRECARVMGYPDSYKVHPSTSQAYKQFGNSVVINVLQYIAYNI 318
>pdb|2UZ4|A Chain A, Hhai Dna Methyltransferase R165n Mutant Complex With 13mer
Gcgc-Gmgc Oligonucleotide And Sah
Length = 327
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 85/197 (43%), Gaps = 21/197 (10%)
Query: 116 TPLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQECSVIQDDCNLVLK 175
T L+ +DLF+G GG L G A+ +S E ++ Y+ NF E + D V +
Sbjct: 10 TGLRFIDLFAGLGGFRLALESCG-AECVYSNEWDKYAQEVYEMNFGEKP--EGDITQVNE 66
Query: 176 SLLKGHTQHKGVSLPQKHEVDLIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLSFCDL 235
+ H D++ AG PCQ FS + + E S+ L F
Sbjct: 67 KTIPDH--------------DILCAGFPCQAFSISGKQKGFEDSR--GTLFFDIARIVRE 110
Query: 236 FQPKYIILENVTGLVHFNKNEILQCIFHCLLKMNYQVTFDVLQSGNYGVAQSRNRVVILA 295
+PK + +ENV + L+ + + + +++Y VL + +YG+ Q R + ++
Sbjct: 111 KKPKVVFMENVKNFASHDNGNTLEVVKNTMNELDYSFHAKVLNALDYGIPQKRENIYMIC 170
Query: 296 SKPGYKLPS--FPQPLH 310
+ + + FP+P
Sbjct: 171 FRNDLNIQNFQFPKPFE 187
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 28/58 (48%)
Query: 539 KQGKILHPEQDRVLTVREYARAQGFPDSYVFRGGICDMYKQIGNAVPPPLAKAIGYEI 596
K G L + R L RE AR G+PDSY YKQ GN+V + + I Y I
Sbjct: 261 KTGGYLVNGKTRKLHPRECARVMGYPDSYKVHPSTSQAYKQFGNSVVINVLQYIAYNI 318
>pdb|2UYC|A Chain A, Hhai Dna Methyltransferase R163n Mutant Complex With 13mer
Gcgc-Gmgc Oligonucleotide And Sah
Length = 327
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 85/197 (43%), Gaps = 21/197 (10%)
Query: 116 TPLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQECSVIQDDCNLVLK 175
T L+ +DLF+G GG L G A+ +S E ++ Y+ NF E + D V +
Sbjct: 10 TGLRFIDLFAGLGGFRLALESCG-AECVYSNEWDKYAQEVYEMNFGEKP--EGDITQVNE 66
Query: 176 SLLKGHTQHKGVSLPQKHEVDLIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLSFCDL 235
+ H D++ AG PCQ FS + + E S+ L F
Sbjct: 67 KTIPDH--------------DILCAGFPCQAFSISGKQKGFEDSR--GTLFFDIARIVRE 110
Query: 236 FQPKYIILENVTGLVHFNKNEILQCIFHCLLKMNYQVTFDVLQSGNYGVAQSRNRVVILA 295
+PK + +ENV + L+ + + + +++Y VL + +YG+ Q R+ ++
Sbjct: 111 KKPKVVFMENVKNFASHDNGNTLEVVKNTMNELDYSFHAKVLNALDYGIPQKNERIYMIC 170
Query: 296 SKPGYKLPS--FPQPLH 310
+ + + FP+P
Sbjct: 171 FRNDLNIQNFQFPKPFE 187
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 28/58 (48%)
Query: 539 KQGKILHPEQDRVLTVREYARAQGFPDSYVFRGGICDMYKQIGNAVPPPLAKAIGYEI 596
K G L + R L RE AR G+PDSY YKQ GN+V + + I Y I
Sbjct: 261 KTGGYLVNGKTRKLHPRECARVMGYPDSYKVHPSTSQAYKQFGNSVVINVLQYIAYNI 318
>pdb|2Z6Q|A Chain A, Ternary Structure Of Arg165ala M.Hhai C5-Cytosine Dna
Methyltransferase With Unmodified Dna And Adohcy
Length = 327
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 85/197 (43%), Gaps = 21/197 (10%)
Query: 116 TPLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQECSVIQDDCNLVLK 175
T L+ +DLF+G GG L G A+ +S E ++ Y+ NF E + D V +
Sbjct: 10 TGLRFIDLFAGLGGFRLALESCG-AECVYSNEWDKYAQEVYEMNFGEKP--EGDITQVNE 66
Query: 176 SLLKGHTQHKGVSLPQKHEVDLIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLSFCDL 235
+ H D++ AG PCQ FS + + E S+ L F
Sbjct: 67 KTIPDH--------------DILCAGFPCQAFSISGKQKGFEDSR--GTLFFDIARIVRE 110
Query: 236 FQPKYIILENVTGLVHFNKNEILQCIFHCLLKMNYQVTFDVLQSGNYGVAQSRNRVVILA 295
+PK + +ENV + L+ + + + +++Y VL + +YG+ Q R + ++
Sbjct: 111 KKPKVVFMENVKNFASHDNGNTLEVVKNTMNELDYSFHAKVLNALDYGIPQKREAIYMIC 170
Query: 296 SKPGYKLPS--FPQPLH 310
+ + + FP+P
Sbjct: 171 FRNDLNIQNFQFPKPFE 187
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 28/58 (48%)
Query: 539 KQGKILHPEQDRVLTVREYARAQGFPDSYVFRGGICDMYKQIGNAVPPPLAKAIGYEI 596
K G L + R L RE AR G+PDSY YKQ GN+V + + I Y I
Sbjct: 261 KTGGYLVNGKTRKLHPRECARVMGYPDSYKVHPSTSQAYKQFGNSVVINVLQYIAYNI 318
>pdb|2Z6A|A Chain A, S-Adenosyl-L-Methionine-Dependent Methyl Transfer:
Observable Precatalytic Intermediates During Dna
Cytosine Methylation
Length = 327
Score = 62.4 bits (150), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 85/197 (43%), Gaps = 21/197 (10%)
Query: 116 TPLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQECSVIQDDCNLVLK 175
T L+ +DLF+G GG L G A+ +S E ++ Y+ NF E + D V +
Sbjct: 10 TGLRFIDLFAGLGGFRLALESCG-AECVYSNEWDKYAQEVYEMNFGEKP--EGDITQVNE 66
Query: 176 SLLKGHTQHKGVSLPQKHEVDLIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLSFCDL 235
+ H D++ AG P Q FS + + E S+ L F
Sbjct: 67 KTIPDH--------------DILCAGFPAQAFSISGKQKGFEDSR--GTLFFDIARIVRE 110
Query: 236 FQPKYIILENVTGLVHFNKNEILQCIFHCLLKMNYQVTFDVLQSGNYGVAQSRNRVVILA 295
+PK + +ENV + L+ + + + +++Y VL + +YG+ Q R R+ ++
Sbjct: 111 KKPKVVFMENVKNFASHDNGNTLEVVKNTMNELDYSFHAKVLNALDYGIPQKRERIYMIC 170
Query: 296 SKPGYKLPS--FPQPLH 310
+ + + FP+P
Sbjct: 171 FRNDLNIQNFQFPKPFE 187
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 28/58 (48%)
Query: 539 KQGKILHPEQDRVLTVREYARAQGFPDSYVFRGGICDMYKQIGNAVPPPLAKAIGYEI 596
K G L + R L RE AR G+PDSY YKQ GN+V + + I Y I
Sbjct: 261 KTGGYLVNGKTRKLHPRECARVMGYPDSYKVHPSTSQAYKQFGNSVVINVLQYIAYNI 318
>pdb|1G55|A Chain A, Structure Of Human Dnmt2, An Enigmatic Dna
Methyltransferase Homologue
Length = 343
Score = 62.0 bits (149), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 89/203 (43%), Gaps = 35/203 (17%)
Query: 117 PLKCLDLFSGCGGLMEGLCQAGV-AKPCWSVELERSEAASYDANFQECSVIQDDCNLVLK 175
PL+ L+L+SG GG+ L ++ + A+ ++++ Y NF ++
Sbjct: 2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPHTQLLAKTI----- 56
Query: 176 SLLKGHTQHKGVSLPQ--KHEVDLIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLSFC 233
+G++L + + D+I+ PPCQ F+++ R ++ S+ +FL
Sbjct: 57 ---------EGITLEEFDRLSFDMILMSPPCQPFTRIGRQGDMTDSRTN-----SFLHIL 102
Query: 234 DLFQ-----PKYIILENVTGLVHFNKNEILQCIFHCLLKMNYQVTFDVLQSGNYGVAQSR 288
D+ PKYI+LENV G F + + + +Q +L + G+ SR
Sbjct: 103 DILPRLQKLPKYILLENVKG---FEVSSTRDLLIQTIENXGFQYQEFLLSPTSLGIPNSR 159
Query: 289 NRVVILASKPGYKLPSFPQPLHA 311
R ++A KL S P P A
Sbjct: 160 LRYFLIA-----KLQSEPLPFQA 177
>pdb|3ME5|A Chain A, Crystal Structure Of Putative Dna Cytosine Methylase From
Shigella Flexneri 2a Str. 2457t
Length = 482
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/221 (23%), Positives = 87/221 (39%), Gaps = 28/221 (12%)
Query: 99 KIIHSKEFLPKFPMPL-DTPLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYD 157
+ H + LPK P + +DLF+G GG+ G G + ++ E + +Y
Sbjct: 69 EFAHLQTLLPKPPEHHPHYAFRFIDLFAGIGGIRRGFESIG-GQCVFTSEWNKHAVRTYK 127
Query: 158 ANFQECSVIQDDCNLVLKSLLKGHTQHKGVSLPQKH------EVDLIVAGPPCQGFS--- 208
AN C N ++ + H + +H E D+++AG PCQ FS
Sbjct: 128 AN-HYCDPATHHFNEDIRDITLSHQEGVSDEAAAEHIRQHIPEHDVLLAGFPCQPFSLAG 186
Query: 209 -----QLNRARELEKSKLKNGLVFTFLSFCDLFQPKYIILENVTGLVHFNKNEILQCIFH 263
L RA + L F + D +P +LENV L +K + + I
Sbjct: 187 VSKKNSLGRAHGF-ACDTQGTLFFDVVRIIDARRPAXFVLENVKNLKSHDKGKTFRIIXQ 245
Query: 264 CLLKMNYQVTFDV---------LQSGNYGVAQSRNRVVILA 295
L ++ Y V D + G + + Q R R+V++
Sbjct: 246 TLDELGYDVA-DAEDNGPDDPKIIDGKHFLPQHRERIVLVG 285
>pdb|3LX6|A Chain A, Crystal Structure Of Putative Dna Cytosine Methylase From
Shigella Flexneri 2a Str. 2457t
pdb|3LX6|B Chain B, Crystal Structure Of Putative Dna Cytosine Methylase From
Shigella Flexneri 2a Str. 2457t
Length = 410
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/221 (23%), Positives = 87/221 (39%), Gaps = 28/221 (12%)
Query: 99 KIIHSKEFLPKFPMPL-DTPLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYD 157
+ H + LPK P + +DLF+G GG+ G G + ++ E + +Y
Sbjct: 7 EFAHLQTLLPKPPEHHPHYAFRFIDLFAGIGGIRRGFESIG-GQCVFTSEWNKHAVRTYK 65
Query: 158 ANFQECSVIQDDCNLVLKSLLKGHTQHKGVSLPQKH------EVDLIVAGPPCQGFS--- 208
AN C N ++ + H + +H E D+++AG PCQ FS
Sbjct: 66 AN-HYCDPATHHFNEDIRDITLSHQEGVSDEAAAEHIRQHIPEHDVLLAGFPCQPFSLAG 124
Query: 209 -----QLNRARELEKSKLKNGLVFTFLSFCDLFQPKYIILENVTGLVHFNKNEILQCIFH 263
L RA + L F + D +P +LENV L +K + + I
Sbjct: 125 VSKKNSLGRAHGF-ACDTQGTLFFDVVRIIDARRPAXFVLENVKNLKSHDKGKTFRIIXQ 183
Query: 264 CLLKMNYQVTFDV---------LQSGNYGVAQSRNRVVILA 295
L ++ Y V D + G + + Q R R+V++
Sbjct: 184 TLDELGYDVA-DAEDNGPDDPKIIDGKHFLPQHRERIVLVG 223
>pdb|4H0N|A Chain A, Crystal Structure Of Spodoptera Frugiperda Dnmt2
E260a/e261a/k263a Mutant
pdb|4H0N|B Chain B, Crystal Structure Of Spodoptera Frugiperda Dnmt2
E260a/e261a/k263a Mutant
pdb|4H0N|C Chain C, Crystal Structure Of Spodoptera Frugiperda Dnmt2
E260a/e261a/k263a Mutant
pdb|4H0N|D Chain D, Crystal Structure Of Spodoptera Frugiperda Dnmt2
E260a/e261a/k263a Mutant
Length = 333
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 76/187 (40%), Gaps = 19/187 (10%)
Query: 119 KCLDLFSGCGGLMEGLCQAGV-AKPCWSVELERSEAASYDANFQECSVIQDDCNLVLKSL 177
K L+L+SG GG+ ++G+ + +V++ + Y NF E +L
Sbjct: 5 KILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFPE------------TNL 52
Query: 178 LKGHTQHKGVSLPQKHEVDLIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLSFCD-LF 236
L + Q + +K VD I+ PPCQ F++ + L+ + + + D L
Sbjct: 53 LNRNIQQLTPQVIKKWNVDTILMSPPCQPFTR--NGKYLDDNDPRTNSFLYLIGILDQLD 110
Query: 237 QPKYIILENVTGLVHFNKNEILQCIFHCLLKMNYQVTFDVLQSGNYGVAQSRNRVVILAS 296
YI++ENV G F + + L + N+ +L GV SR R A
Sbjct: 111 NVDYILMENVKG---FENSTVRNLFIDKLKECNFIYQEFLLCPSTVGVPNSRLRYYCTAR 167
Query: 297 KPGYKLP 303
+ P
Sbjct: 168 RNNLTWP 174
>pdb|4DKJ|A Chain A, Cpg Specific Methyltransferase In Complex With Target Dna
Length = 403
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 49/115 (42%), Gaps = 9/115 (7%)
Query: 195 VDLIVAGPPCQGFSQLNRARELEKS-KLKNGLVFTFL--------SFCDLFQPKYIILEN 245
+D+ PCQ S + ++K ++GL++ SF PKY+++EN
Sbjct: 126 IDIFTYSFPCQDLSVQGLQKGIDKELNTRSGLLWEIERILEEIKNSFSKEEMPKYLLMEN 185
Query: 246 VTGLVHFNKNEILQCIFHCLLKMNYQVTFDVLQSGNYGVAQSRNRVVILASKPGY 300
V L+ + L K Y+ +L S N+ Q+R RV L+ + Y
Sbjct: 186 VKNLLSHKNKKNYNTWLKQLEKFGYKSKTYLLNSKNFDNCQNRERVFCLSIRDDY 240
>pdb|2WFE|A Chain A, Structure Of The Candida Albicans Cytosolic Leucyl-Trna
Synthetase Editing Domain
pdb|2WFE|B Chain B, Structure Of The Candida Albicans Cytosolic Leucyl-Trna
Synthetase Editing Domain
pdb|2WFE|C Chain C, Structure Of The Candida Albicans Cytosolic Leucyl-Trna
Synthetase Editing Domain
pdb|2WFE|D Chain D, Structure Of The Candida Albicans Cytosolic Leucyl-Trna
Synthetase Editing Domain
pdb|2WFG|A Chain A, Structure Of The Candida Albicans Cytosolic Leucyl-Trna
Synthetase Editing Domain Bound To A Benzoxaborole-Amp
Adduct
Length = 261
Score = 29.3 bits (64), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Query: 281 NYGVAQSRNRVVILASKPGYKLPSFPQ--PLHAFSNQLFTINGNLVANKTSHAPY 333
+YGV + N + ++ +K SF P + LFTING + APY
Sbjct: 58 DYGVFDAGNGDYFITTERAFKNMSFQNLTPKRGYYKPLFTINGKTLIGSRIDAPY 112
>pdb|3SNP|A Chain A, Crystal Structure Analysis Of Iron Regulatory Protein 1 In
Complex With Ferritin H Ire Rna
pdb|3SNP|B Chain B, Crystal Structure Analysis Of Iron Regulatory Protein 1 In
Complex With Ferritin H Ire Rna
pdb|3SN2|A Chain A, Crystal Structure Analysis Of Iron Regulatory Protein 1 In
Complex With Transferrin Receptor Ire B Rna
Length = 908
Score = 28.9 bits (63), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 39/91 (42%), Gaps = 14/91 (15%)
Query: 529 TIVTTPNPLNKQGKILHPEQDRVLTVREYARAQGFPDS-----YVFRGGICDMYKQIGNA 583
T + P+ + G + D L V+ Y + P S Y+ G+ Q+G
Sbjct: 457 TNTSNPSVMLGAGLLAKKAVDAGLNVKPYVKTSLSPGSGVVTYYLRESGVMPYLSQLGFD 516
Query: 584 VPPPLAKAIGYEIIKCIGNA--VPPPLAKAI 612
V +GY + CIGN+ +P P+ +AI
Sbjct: 517 V-------VGYGSMTCIGNSGPLPEPVVEAI 540
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,082,415
Number of Sequences: 62578
Number of extensions: 792288
Number of successful extensions: 1579
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1449
Number of HSP's gapped (non-prelim): 78
length of query: 620
length of database: 14,973,337
effective HSP length: 105
effective length of query: 515
effective length of database: 8,402,647
effective search space: 4327363205
effective search space used: 4327363205
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)