BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12304
(620 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q24K09|DNMT1_BOVIN DNA (cytosine-5)-methyltransferase 1 OS=Bos taurus GN=DNMT1 PE=2 SV=1
Length = 1611
Score = 421 bits (1083), Expect = e-117, Method: Compositional matrix adjust.
Identities = 219/493 (44%), Positives = 303/493 (61%), Gaps = 46/493 (9%)
Query: 118 LKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQECSVIQDDCNLVLKSL 177
L+ LD+FSGCGGL EG QAG+++ W++E+ A ++ N +V +DCN++LK +
Sbjct: 1136 LRTLDVFSGCGGLSEGFHQAGISETLWAIEMWDPAAQAFRLNNPGSTVFTEDCNVLLKLV 1195
Query: 178 LKGH-TQHKGVSLPQKHEVDLIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLSFCDLF 236
+ G T +G LPQK +V+++ GPPCQGFS +NR SK KN LV +FLS+CD +
Sbjct: 1196 MAGEVTNSRGQKLPQKGDVEMLCGGPPCQGFSGMNRFNSRTYSKFKNSLVVSFLSYCDYY 1255
Query: 237 QPKYIILENVTGLVHFNKNEILQCIFHCLLKMNYQVTFDVLQSGNYGVAQSRNRVVILAS 296
+P+Y +LENV V F ++ +L+ CL++M YQ TF VLQ+G YGVAQ+R R +ILA+
Sbjct: 1256 RPRYFLLENVRNFVSFKRSMVLKLTLRCLVRMGYQCTFGVLQAGQYGVAQTRRRAIILAA 1315
Query: 297 KPGYKLPSFPQPLHAFSN---QLFTI--NGNLVANKT--SHAPYRSITVRDAISDLPRVS 349
PG LP FP+PLH F+ QL + + V+N T S P+R+ITVRD +SDLP +
Sbjct: 1316 APGEPLPLFPEPLHVFAPRACQLSVVVDDKKFVSNITRLSSGPFRTITVRDTMSDLPEIR 1375
Query: 350 QGANCY--LFHNPPKTHFQRMMKDGSRIHDIHINLRELLQDHICKILSPLMEMRIRLIPS 407
GA+ ++ P++ FQR ++ GS+ I L+DHICK +S L+ R+R IP
Sbjct: 1376 NGASALEISYNGEPQSWFQRQLR-GSQYQPI-------LRDHICKDMSALVAARMRHIPL 1427
Query: 408 FPNADWRDLPNICVKLPRGQHSYTEKLKYNAKKKKSVCDCKSSSSCTSKGQKNTIIPWSL 467
P +DWRDLPNI V+L G + KL+YN KK+ C
Sbjct: 1428 APGSDWRDLPNIEVRLSDG--TLARKLRYNYHDKKNGC---------------------- 1463
Query: 468 VHTASRNNNWQGVLGRLAWDESFDMTGQKNTIIPWSLVHTASRNNNWQGVLGRLAWDESF 527
S + +GV + Q NT+IPW L HT +R+N+W G+ GRL WD F
Sbjct: 1464 ----SSSGALRGVCSCVEGKPCEPAARQFNTLIPWCLPHTGNRHNHWAGLYGRLEWDGFF 1519
Query: 528 DTIVTTPNPLNKQGKILHPEQDRVLTVREYARAQGFPDSYVFRGGICDMYKQIGNAVPPP 587
T VT P P+ KQG++LHPEQ RV++VRE AR+QGFPD+Y G I D ++Q+GNAVPPP
Sbjct: 1520 STTVTNPEPMGKQGRVLHPEQHRVVSVRECARSQGFPDTYRLFGNILDKHRQVGNAVPPP 1579
Query: 588 LAKAIGYEIIKCI 600
LAKAIG EI +C+
Sbjct: 1580 LAKAIGLEIKRCM 1592
>sp|Q27746|DNMT1_PARLI DNA (cytosine-5)-methyltransferase PliMCI OS=Paracentrotus lividus
GN=DNMT PE=2 SV=1
Length = 1612
Score = 419 bits (1076), Expect = e-116, Method: Compositional matrix adjust.
Identities = 215/501 (42%), Positives = 297/501 (59%), Gaps = 62/501 (12%)
Query: 118 LKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQECSVIQDDCNLVLKSL 177
LKCLD+F+GCGGL EG QAG+ + W++E E A +Y N +V DDCN +L+ +
Sbjct: 1131 LKCLDVFAGCGGLSEGFHQAGICESSWAIEKEEPAAQAYRLNNPGSTVFSDDCNELLRLV 1190
Query: 178 LKGH-TQHKGVSLPQKHEVDLIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLSFCDLF 236
++G T G LPQK +V+L+ GPPCQGFS +NR E SK KN L+ ++LS+CD +
Sbjct: 1191 MQGEKTSRTGQKLPQKGDVELLCGGPPCQGFSGMNRFNSREYSKFKNSLISSYLSYCDYY 1250
Query: 237 QPKYIILENVTGLVHFNKNEILQCIFHCLLKMNYQVTFDVLQSGNYGVAQSRNRVVILAS 296
+P++ +LENV V + KN +L+ CL++M YQ TF +LQ+G YGV Q+R R +ILA+
Sbjct: 1251 RPRFFLLENVRNFVSYKKNMVLKLALRCLIRMGYQCTFGILQAGQYGVPQTRRRAIILAA 1310
Query: 297 KPGYKLPSFPQPLHAFSNQLFTINGNLVANKTSH-------APYRSITVRDAISDLPRVS 349
PG KLP +P+PLH FS++ +++ + K APYR+ITVRD +SDLP ++
Sbjct: 1311 APGEKLPFYPEPLHVFSSRACSLSVMIGEKKIESNNQWCLSAPYRTITVRDTMSDLPTIN 1370
Query: 350 QGANCY--LFHNPPKTHFQRMMKDGSRIHDIHINLRELLQDHICKILSPLMEMRIRLIPS 407
GA + P++ FQ+ ++ G++ I L+DHICK +S L+ R++ IP
Sbjct: 1371 NGAQKLEISYDGEPQSDFQKKIR-GNQYQPI-------LRDHICKDMSSLVAARMKHIPL 1422
Query: 408 FPNADWRDLPNICVKLPRG----QHSYTEKLKYNAKKK----KSVCDCKSSSSCTSKGQK 459
P +DWRDLPNI V L G + YT K K N K + VC C +C +
Sbjct: 1423 APGSDWRDLPNIPVTLKDGTTCRKLRYTHKDKKNGKSSTGALRGVCSCAEGDACDPSDR- 1481
Query: 460 NTIIPWSLVHTASRNNNWQGVLGRLAWDESFDMTGQKNTIIPWSLVHTASRNNNWQGVLG 519
Q +T+IPW L HT +R+NNW G+ G
Sbjct: 1482 -----------------------------------QFSTLIPWCLPHTGNRHNNWAGLYG 1506
Query: 520 RLAWDESFDTIVTTPNPLNKQGKILHPEQDRVLTVREYARAQGFPDSYVFRGGICDMYKQ 579
RL WD F T VT P P+ KQG++LHPEQ RV++VRE AR+QGFPD+Y F G I D ++Q
Sbjct: 1507 RLEWDGFFSTTVTNPEPMGKQGRVLHPEQHRVVSVRECARSQGFPDTYRFFGSILDKHRQ 1566
Query: 580 IGNAVPPPLAKAIGYEIIKCI 600
IGNAVPPP+A AIG EI C+
Sbjct: 1567 IGNAVPPPMAAAIGMEIKVCL 1587
>sp|P26358|DNMT1_HUMAN DNA (cytosine-5)-methyltransferase 1 OS=Homo sapiens GN=DNMT1 PE=1
SV=2
Length = 1616
Score = 416 bits (1069), Expect = e-115, Method: Compositional matrix adjust.
Identities = 219/493 (44%), Positives = 305/493 (61%), Gaps = 45/493 (9%)
Query: 118 LKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQECSVIQDDCNLVLKSL 177
L+ LD+FSGCGGL EG QAG++ W++E+ A ++ N +V +DCN++LK +
Sbjct: 1139 LRTLDVFSGCGGLSEGFHQAGISDTLWAIEMWDPAAQAFRLNNPGSTVFTEDCNILLKLV 1198
Query: 178 LKGHTQH-KGVSLPQKHEVDLIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLSFCDLF 236
+ G T + +G LPQK +V+++ GPPCQGFS +NR SK KN LV +FLS+CD +
Sbjct: 1199 MAGETTNSRGQRLPQKGDVEMLCGGPPCQGFSGMNRFNSRTYSKFKNSLVVSFLSYCDYY 1258
Query: 237 QPKYIILENVTGLVHFNKNEILQCIFHCLLKMNYQVTFDVLQSGNYGVAQSRNRVVILAS 296
+P++ +LENV V F ++ +L+ CL++M YQ TF VLQ+G YGVAQ+R R +ILA+
Sbjct: 1259 RPRFFLLENVRNFVSFKRSMVLKLTLRCLVRMGYQCTFGVLQAGQYGVAQTRRRAIILAA 1318
Query: 297 KPGYKLPSFPQPLHAFSN---QLFTI--NGNLVANKT--SHAPYRSITVRDAISDLPRVS 349
PG KLP FP+PLH F+ QL + + V+N T S P+R+ITVRD +SDLP V
Sbjct: 1319 APGEKLPLFPEPLHVFAPRACQLSVVVDDKKFVSNITRLSSGPFRTITVRDTMSDLPEVR 1378
Query: 350 QGANCY--LFHNPPKTHFQRMMKDGSRIHDIHINLRELLQDHICKILSPLMEMRIRLIPS 407
GA+ ++ P++ FQR ++ G++ I L+DHICK +S L+ R+R IP
Sbjct: 1379 NGASALEISYNGEPQSWFQRQLR-GAQYQPI-------LRDHICKDMSALVAARMRHIPL 1430
Query: 408 FPNADWRDLPNICVKLPRGQHSYTEKLKYNAKKKKSVCDCKSSSSCTSKGQKNTIIPWSL 467
P +DWRDLPNI V+L G + KL+Y +K+ SSS +G + +
Sbjct: 1431 APGSDWRDLPNIEVRLSDG--TMARKLRYTHHDRKN----GRSSSGALRGVCSCVEAGKA 1484
Query: 468 VHTASRNNNWQGVLGRLAWDESFDMTGQKNTIIPWSLVHTASRNNNWQGVLGRLAWDESF 527
A+R Q NT+IPW L HT +R+N+W G+ GRL WD F
Sbjct: 1485 CDPAAR---------------------QFNTLIPWCLPHTGNRHNHWAGLYGRLEWDGFF 1523
Query: 528 DTIVTTPNPLNKQGKILHPEQDRVLTVREYARAQGFPDSYVFRGGICDMYKQIGNAVPPP 587
T VT P P+ KQG++LHPEQ RV++VRE AR+QGFPD+Y G I D ++Q+GNAVPPP
Sbjct: 1524 STTVTNPEPMGKQGRVLHPEQHRVVSVRECARSQGFPDTYRLFGNILDKHRQVGNAVPPP 1583
Query: 588 LAKAIGYEIIKCI 600
LAKAIG EI C+
Sbjct: 1584 LAKAIGLEIKLCM 1596
>sp|Q92072|DNMT1_CHICK DNA (cytosine-5)-methyltransferase 1 OS=Gallus gallus GN=DNMT1 PE=1
SV=1
Length = 1537
Score = 416 bits (1069), Expect = e-115, Method: Compositional matrix adjust.
Identities = 227/527 (43%), Positives = 310/527 (58%), Gaps = 77/527 (14%)
Query: 111 PMPLDTP-LKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQECSVIQDD 169
P L P L+ LD+FSGCGGL EG QAGV++ W++E+ A ++ N +V +D
Sbjct: 1046 PTELKLPKLRTLDVFSGCGGLSEGFHQAGVSETLWAIEMWEPAAQAFRLNNPGTTVFTED 1105
Query: 170 CNLVLKSLLKGH-TQHKGVSLPQKHEVDLIVAGPPCQGFSQLNRARELEKSKLKNGLVFT 228
CN++LK ++ G T G LPQK +V+++ GPPCQGFS +NR SK KN LV +
Sbjct: 1106 CNVLLKLVMSGEKTNSLGQKLPQKGDVEMLCGGPPCQGFSGMNRFNSRTYSKFKNSLVVS 1165
Query: 229 FLSFCDLFQPKYIILENVTGLVHFNKNEILQCIFHCLLKMNYQVTFDVLQSGNYGVAQSR 288
FLS+CD ++P++ +LENV V F ++ +L+ CL++M YQ TF VLQ+G YGVAQ+R
Sbjct: 1166 FLSYCDYYRPRFFLLENVRNFVSFKRSMVLKLTLRCLVRMGYQCTFGVLQAGQYGVAQTR 1225
Query: 289 NRVVILASKPGYKLPSFPQPLHAFSN---QLFTI--NGNLVAN--KTSHAPYRSITVRDA 341
R ++LA+ PG KLP FP+PLH F+ QL + + V+N +T P+R+ITVRD
Sbjct: 1226 RRAIVLAAAPGEKLPMFPEPLHVFAPRACQLSVVVDDKKFVSNITRTYSGPFRTITVRDT 1285
Query: 342 ISDLPRVSQGANCY--LFHNPPKTHFQRMMKDGSRIHDIHINLRELLQDHICKILSPLME 399
+SDLP + GA+ ++ P++ FQR ++ GS+ I L+DHICK +S L+
Sbjct: 1286 MSDLPEIRNGASALEISYNGEPQSWFQRQIR-GSQYQPI-------LRDHICKDMSALVA 1337
Query: 400 MRIRLIPSFPNADWRDLPNICVKLPRGQHSYTEKLKYNAKKKKS----------VCDCKS 449
R+R IP P +DWRDLPNI V+L G + T KL+Y +KK+ VC C
Sbjct: 1338 ARMRHIPLAPGSDWRDLPNIEVRLSDG--TSTRKLRYTHHEKKNGRSSSGALRGVCSCAE 1395
Query: 450 SSSCT-SKGQKNTIIPWSLVHTASRNNNWQGVLGRLAWDESFDMTGQKNTIIPWSLVHTA 508
C + Q NT+IPW L HT +R+N+W G+ GRL WD F
Sbjct: 1396 GKPCDPADRQFNTLIPWCLPHTGNRHNHWAGLYGRLEWD-GF------------------ 1436
Query: 509 SRNNNWQGVLGRLAWDESFDTIVTTPNPLNKQGKILHPEQDRVLTVREYARAQGFPDSYV 568
F T VT P P+ KQG++LHPEQ RV++VRE AR+QGFPD+Y
Sbjct: 1437 ------------------FSTTVTNPEPMGKQGRVLHPEQHRVVSVRECARSQGFPDTYR 1478
Query: 569 FRGGICDMYKQIGNAVPPPLAKAIGYEIIKCI--------GNAVPPP 607
G I D ++Q+GNAVPPPLAKAIG EI C+ G AV PP
Sbjct: 1479 LFGNILDKHRQVGNAVPPPLAKAIGLEIRACVGARMREESGAAVAPP 1525
Score = 38.1 bits (87), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 58/127 (45%), Gaps = 19/127 (14%)
Query: 4 HVQWLVRPNDTILGDKIQFDNSTLFLTNACESIDLSVIKKTVCVDFV--TNDSSEEEILD 61
H W +DT+LG D LFL + CE + LS I V V + + + + E LD
Sbjct: 704 HAHWFCPGSDTVLG--ATSDPLELFLVDECEDMQLSYIHGKVNVIYKPPSENWAMEGGLD 761
Query: 62 NEHEEKDETIYTEYYRKTKDKHFVQ----PNARPLE---------LAYILKIIHSKEFLP 108
E + ++ T +Y+ D+ + + P A+P+E A + ++ H + +P
Sbjct: 762 MEIKMVEDDGRTYFYQMWYDQEYARFETPPRAQPMEDNKYKFCLSCARLDEVRHKE--IP 819
Query: 109 KFPMPLD 115
K PLD
Sbjct: 820 KVAEPLD 826
>sp|P13864|DNMT1_MOUSE DNA (cytosine-5)-methyltransferase 1 OS=Mus musculus GN=Dnmt1 PE=1
SV=5
Length = 1620
Score = 409 bits (1050), Expect = e-113, Method: Compositional matrix adjust.
Identities = 220/504 (43%), Positives = 302/504 (59%), Gaps = 68/504 (13%)
Query: 118 LKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQECSVIQDDCNLVLKSL 177
L+ LD+FSGCGGL EG QAG+++ W++E+ A ++ N +V +DCN++LK +
Sbjct: 1142 LRTLDVFSGCGGLSEGFHQAGISETLWAIEMWDPAAQAFRLNNPGTTVFTEDCNVLLKLV 1201
Query: 178 LKGH-TQHKGVSLPQKHEVDLIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLSFCDLF 236
+ G T G LPQK +V+++ GPPCQGFS +NR SK KN LV +FLS+CD +
Sbjct: 1202 MAGEVTNSLGQRLPQKGDVEMLCGGPPCQGFSGMNRFNSRTYSKFKNSLVVSFLSYCDYY 1261
Query: 237 QPKYIILENVTGLVHFNKNEILQCIFHCLLKMNYQVTFDVLQSGNYGVAQSRNRVVILAS 296
+P++ +LENV V + ++ +L+ CL++M YQ TF VLQ+G YGVAQ+R R +ILA+
Sbjct: 1262 RPRFFLLENVRNFVSYRRSMVLKLTLRCLVRMGYQCTFGVLQAGQYGVAQTRRRAIILAA 1321
Query: 297 KPGYKLPSFPQPLHAFSN---QLFTI--NGNLVANKT--SHAPYRSITVRDAISDLPRVS 349
PG KLP FP+PLH F+ QL + + V+N T S P+R+ITVRD +SDLP +
Sbjct: 1322 APGEKLPLFPEPLHVFAPRACQLSVVVDDKKFVSNITRLSSGPFRTITVRDTMSDLPEIQ 1381
Query: 350 QGA-NCYLFHN-PPKTHFQRMMKDGSRIHDIHINLRELLQDHICKILSPLMEMRIRLIPS 407
GA N + +N P + FQR ++ GS I L+DHICK +SPL+ R+R IP
Sbjct: 1382 NGASNSEIPYNGEPLSWFQRQLR-GSHYQPI-------LRDHICKDMSPLVAARMRHIPL 1433
Query: 408 FPNADWRDLPNICVKLPRGQHSYTEKLKY----------NAKKKKSVCDCKSSSSCTSKG 457
FP +DWRDLPNI V+L G KL+Y + + VC C +C +
Sbjct: 1434 FPGSDWRDLPNIQVRL--GDGVIAHKLQYTFHDVKNGYSSTGALRGVCSCAEGKACDPES 1491
Query: 458 QK-NTIIPWSLVHTASRNNNWQGVLGRLAWDESFDMTGQKNTIIPWSLVHTASRNNNWQG 516
++ +T+IPW L HT +R+N+W G+ GRL WD F
Sbjct: 1492 RQFSTLIPWCLPHTGNRHNHWAGLYGRLEWD-GF-------------------------- 1524
Query: 517 VLGRLAWDESFDTIVTTPNPLNKQGKILHPEQDRVLTVREYARAQGFPDSYVFRGGICDM 576
F T VT P P+ KQG++LHPEQ RV++VRE AR+QGFPDSY F G I D
Sbjct: 1525 ----------FSTTVTNPEPMGKQGRVLHPEQHRVVSVRECARSQGFPDSYRFFGNILDR 1574
Query: 577 YKQIGNAVPPPLAKAIGYEIIKCI 600
++Q+GNAVPPPLAKAIG EI C+
Sbjct: 1575 HRQVGNAVPPPLAKAIGLEIKLCL 1598
>sp|Q9Z330|DNMT1_RAT DNA (cytosine-5)-methyltransferase 1 OS=Rattus norvegicus GN=Dnmt1
PE=1 SV=2
Length = 1622
Score = 374 bits (961), Expect = e-103, Method: Compositional matrix adjust.
Identities = 230/630 (36%), Positives = 329/630 (52%), Gaps = 78/630 (12%)
Query: 1 MKAHVQWLVRPNDTILGDKIQF--DNSTLFLTNACESIDLSVIKKTVCVDFVTNDSSEEE 58
+K + RP +T + + D + L+ ++ +D S ++ V++ + E
Sbjct: 1019 IKIRLYKFYRPENTHKSIQATYHADINLLYWSDEEAVVDFSDVQGRCTVEY--GEDLLES 1076
Query: 59 ILDNEHEEKDETIYTEYYRKTKDKHFVQP--NARPLELAYILKIIHSKEFLPKFPMPLDT 116
I D D + E Y +K K F P +AR K + P+ P +
Sbjct: 1077 IQDYSQGGPDRFYFLEAY-NSKTKSFEDPPNHARSPGNKGKGKGKGKGKGKPQVSEPKEP 1135
Query: 117 P-------LKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQECSVIQDD 169
L+ LD+FSGCGGL EG QAG+++ W++E+ A ++ N +V +D
Sbjct: 1136 EAAIKLPKLRTLDVFSGCGGLTEGFHQAGISETLWAIEMWEPAAQAFRLNNPGTTVFTED 1195
Query: 170 CNLVLKSLLKGH-TQHKGVSLPQKHEVDLIVAGPPCQGFSQLNRARELEKSKLKNGLVFT 228
CN++LK ++ G T G LPQK +V+++ GPPCQGFS +NR SK KN LV +
Sbjct: 1196 CNVLLKLVMAGEVTNSLGQRLPQKGDVEMLCGGPPCQGFSGMNRFNSRTYSKFKNSLVVS 1255
Query: 229 FLSFCDLFQPKYIILENVTGLVHFNKNEILQCIFHCLLKMNYQVTFDVLQSGNYGVAQSR 288
FLS+CD ++P++ +LENV V F ++ +L+ CL++M YQ TF VLQ+G YGVAQ+R
Sbjct: 1256 FLSYCDYYRPRFFLLENVRNFVSFRRSMVLKLTLRCLVRMGYQCTFGVLQAGQYGVAQTR 1315
Query: 289 NRVVILASKPGYKLPSFPQPLHAFSN---QLFTI--NGNLVANKT--SHAPYRSITVRDA 341
R +ILA+ PG KLP FP+PLH F+ QL + + V+N T S P+R+IT+RD
Sbjct: 1316 RRAIILAAAPGEKLPLFPEPLHVFAPRACQLSVVVDDKKFVSNITRLSSGPFRTITMRDT 1375
Query: 342 ISDLPRVSQGANCYLFHNPPKTHFQRMMKDGSRIHDIHINLRELLQDHICKILSPLMEMR 401
+SDLP + GA+ P+ ++ + L Q ++ R
Sbjct: 1376 MSDLPEIQNGASA------PEISYKWRATVLVPEAAARVALPAHPQGPYPQVHERAGGCR 1429
Query: 402 IRLIPSFPNADWRDLPNICVKLPRGQHSYTEKLKYNAKKKKS----------VCDCKSSS 451
+R IP P +DWRDLPNI V+L G T KL+Y K+ VC C
Sbjct: 1430 MRHIPLSPGSDWRDLPNIQVRLRDG--VITNKLRYTFHDTKNGCSSTGALRGVCSCAEGK 1487
Query: 452 SCT-SKGQKNTIIPWSLVHTASRNNNWQGVLGRLAWDESFDMTGQKNTIIPWSLVHTASR 510
+C + Q NT+IPW L HT +R+N+W G+ GRL WD F
Sbjct: 1488 TCDPASRQFNTLIPWCLPHTGNRHNHWAGLYGRLEWD-GF-------------------- 1526
Query: 511 NNNWQGVLGRLAWDESFDTIVTTPNPLNKQGKILHPEQDRVLTVREYARAQGFPDSYVFR 570
F T VT P P+ KQG++LHPEQ RV++VRE AR+QGFPD+Y
Sbjct: 1527 ----------------FSTTVTNPEPMGKQGRVLHPEQHRVVSVRECARSQGFPDTYRLF 1570
Query: 571 GGICDMYKQIGNAVPPPLAKAIGYEIIKCI 600
G I D ++Q+GNAVPPPLAKAIG EI C+
Sbjct: 1571 GNILDRHRQVGNAVPPPLAKAIGLEIKLCL 1600
>sp|B1Q3J6|DNM1B_ORYSJ DNA (cytosine-5)-methyltransferase 1B OS=Oryza sativa subsp. japonica
GN=MET1B PE=2 SV=1
Length = 1529
Score = 323 bits (828), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 188/510 (36%), Positives = 266/510 (52%), Gaps = 105/510 (20%)
Query: 118 LKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQECSVIQDDCNLVLKSL 177
L LD+F+GCGGL EGL QAGV+ W++E E ++ N E +V D+CN++LK++
Sbjct: 1093 LATLDIFAGCGGLSEGLQQAGVSFTKWAIEYEEPAGEAFTKNHPEAAVFVDNCNVILKAI 1152
Query: 178 LKG-------------------HTQHKGVSLPQKHEVDLIVAGPPCQGFSQLNRARELEK 218
+ +Q ++LP EV+ I GPPCQGFS +NR +
Sbjct: 1153 MDKCGDADDCISTSEAAEQAAKFSQDNIMNLPVPGEVEFINGGPPCQGFSGMNRFNQSPW 1212
Query: 219 SKLKNGLVFTFLSFCDLFQPKYIILENVTGLVHFNKNEILQCIFHCLLKMNYQVTFDVLQ 278
SK++ ++ FLSF + F+P++ +LENV V FNK + + LL+M YQV F +L+
Sbjct: 1213 SKVQCEMILAFLSFAEYFRPRFFLLENVRNFVSFNKGQTFRLTVASLLEMGYQVRFGILE 1272
Query: 279 SGNYGVAQSRNRVVILASKPGYKLPSFPQPLHAFSNQLFTIN---GNLVANKTS---HAP 332
+G +GVAQSR R I A+ PG LP +P+P+H F++ IN G A S AP
Sbjct: 1273 AGTFGVAQSRKRAFIWAAAPGETLPDWPEPMHVFASPELKINLPDGKYYAAAKSTAGGAP 1332
Query: 333 YRSITVRDAISDLPRVSQGANCYL--FHNPPKTHFQRMMKDGSRIHDIHINLRELLQDHI 390
+R+ITVRD I DLP+V GA+ L + P + FQ+ ++ G+ I L DHI
Sbjct: 1333 FRAITVRDTIGDLPKVENGASKLLLEYGGEPISWFQKKIR-GNTI---------ALNDHI 1382
Query: 391 CKILSPLMEMRIRLIPSFPNADWRDLPNICVKLPRGQHSYTEKLKYNAKKKKSVCDCKSS 450
K ++ L +R + IP P DW DLP+ VKL
Sbjct: 1383 SKEMNELNLIRCQRIPKRPGCDWHDLPDEKVKL--------------------------- 1415
Query: 451 SSCTSKGQKNTIIPWSLVHTASRNNNWQGVLGRLAWDESFDMTGQKNTIIPWSLVHTASR 510
S GQ +IPW L +TA R+N W+G+ GRL
Sbjct: 1416 ----SSGQLVDLIPWCLPNTAKRHNQWKGLYGRL-------------------------- 1445
Query: 511 NNNWQGVLGRLAWDESFDTIVTTPNPLNKQGKILHPEQDRVLTVREYARAQGFPDSYVFR 570
+W+G +F T VT P P+ K G HP+QDR++TVRE AR+QGFPD+Y F
Sbjct: 1446 --DWEG---------NFPTSVTDPQPMGKVGMCFHPDQDRIITVRECARSQGFPDNYQFA 1494
Query: 571 GGICDMYKQIGNAVPPPLAKAIGYEIIKCI 600
G I ++QIGNAVPPPLA A+G ++ + +
Sbjct: 1495 GNIQSKHRQIGNAVPPPLAFALGRKLKEAV 1524
>sp|Q7Y1I7|DNM1A_ORYSJ DNA (cytosine-5)-methyltransferase 1A OS=Oryza sativa subsp. japonica
GN=MET1A PE=2 SV=1
Length = 1527
Score = 318 bits (814), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 184/510 (36%), Positives = 263/510 (51%), Gaps = 105/510 (20%)
Query: 118 LKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQECSVIQDDCNLVLKSL 177
L LD+F+GCGGL EGL ++G++ W++E E ++ N E +V ++CN++LK++
Sbjct: 1092 LATLDIFAGCGGLSEGLQRSGLSLTKWAIEYEEPAGDAFGENHPEAAVFVENCNVILKAI 1151
Query: 178 L-------------------KGHTQHKGVSLPQKHEVDLIVAGPPCQGFSQLNRARELEK 218
+ ++ K +LP EV+ I GPPCQGFS +NR +
Sbjct: 1152 MDKCGDSDDCISTSEAAERAAKLSEDKIKNLPVPGEVEFINGGPPCQGFSGMNRFNQSPW 1211
Query: 219 SKLKNGLVFTFLSFCDLFQPKYIILENVTGLVHFNKNEILQCIFHCLLKMNYQVTFDVLQ 278
SK++ ++ FLSF + F+P++ +LENV V FNK + + LL+M YQV F +L+
Sbjct: 1212 SKVQCEMILAFLSFAEYFRPRFFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILE 1271
Query: 279 SGNYGVAQSRNRVVILASKPGYKLPSFPQPLHAFSNQLFTI---NGNL---VANKTSHAP 332
+G YGVAQSR R I A+ PG LP +P+P+H F++ I +G V + + AP
Sbjct: 1272 AGAYGVAQSRKRAFIWAAAPGETLPEWPEPMHVFASPELKITLPDGKFYAAVKSTAAGAP 1331
Query: 333 YRSITVRDAISDLPRVSQGAN--CYLFHNPPKTHFQRMMKDGSRIHDIHINLRELLQDHI 390
+RSITVRD I DLP V GA + + P + FQ+ ++ L DHI
Sbjct: 1332 FRSITVRDTIGDLPAVENGAGKPTIQYGSGPVSWFQKKIRSD----------MASLNDHI 1381
Query: 391 CKILSPLMEMRIRLIPSFPNADWRDLPNICVKLPRGQHSYTEKLKYNAKKKKSVCDCKSS 450
K ++ L +R + IP P DW DLP+ VKL
Sbjct: 1382 SKEMNELNLIRCKHIPKRPGCDWHDLPDEKVKL--------------------------- 1414
Query: 451 SSCTSKGQKNTIIPWSLVHTASRNNNWQGVLGRLAWDESFDMTGQKNTIIPWSLVHTASR 510
S GQ +IPW L +TA R+N W+G+ GRL
Sbjct: 1415 ----STGQMVDLIPWCLPNTAKRHNQWKGLYGRL-------------------------- 1444
Query: 511 NNNWQGVLGRLAWDESFDTIVTTPNPLNKQGKILHPEQDRVLTVREYARAQGFPDSYVFR 570
+W+G +F T VT P P+ K G HPEQDR++TVRE AR+QGFPDSY F
Sbjct: 1445 --DWEG---------NFPTSVTDPQPMGKVGMCFHPEQDRIITVRECARSQGFPDSYRFA 1493
Query: 571 GGICDMYKQIGNAVPPPLAKAIGYEIIKCI 600
G I + ++QIGNAVPPPLA A+G ++ + I
Sbjct: 1494 GNIQNKHRQIGNAVPPPLAYALGRKLKQAI 1523
>sp|P34881|DNMT1_ARATH DNA (cytosine-5)-methyltransferase 1 OS=Arabidopsis thaliana GN=DMT1
PE=1 SV=1
Length = 1534
Score = 314 bits (804), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 189/515 (36%), Positives = 261/515 (50%), Gaps = 105/515 (20%)
Query: 113 PLDTPLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQECSVIQDDCNL 172
P + L LD+F+GCGGL GL +AGV+ W++E E ++ N E +V D+CN+
Sbjct: 1088 PKEIRLATLDIFAGCGGLSHGLKKAGVSDAKWAIEYEEPAGQAFKQNHPESTVFVDNCNV 1147
Query: 173 VLKSLL-KGHTQHKGVS------------------LPQKHEVDLIVAGPPCQGFSQLNRA 213
+L++++ KG Q VS LP +VD I GPPCQGFS +NR
Sbjct: 1148 ILRAIMEKGGDQDDCVSTTEANELAAKLTEEQKSTLPLPGQVDFINGGPPCQGFSGMNRF 1207
Query: 214 RELEKSKLKNGLVFTFLSFCDLFQPKYIILENVTGLVHFNKNEILQCIFHCLLKMNYQVT 273
+ SK++ ++ FLSF D F+P+Y +LENV V FNK + Q LL+M YQV
Sbjct: 1208 NQSSWSKVQCEMILAFLSFADYFRPRYFLLENVRTFVSFNKGQTFQLTLASLLEMGYQVR 1267
Query: 274 FDVLQSGNYGVAQSRNRVVILASKPGYKLPSFPQPLHAFSNQLFTINGN------LVANK 327
F +L++G YGV+QSR R I A+ P LP +P+P+H F I+ + V +
Sbjct: 1268 FGILEAGAYGVSQSRKRAFIWAAAPEEVLPEWPEPMHVFGVPKLKISLSQGLHYAAVRST 1327
Query: 328 TSHAPYRSITVRDAISDLPRVSQGANCY--LFHNPPKTHFQRMMKDGSRIHDIHINLREL 385
AP+R ITVRD I DLP V G + + + FQ+ ++ G+ I
Sbjct: 1328 ALGAPFRPITVRDTIGDLPSVENGDSRTNKEYKEVAVSWFQKEIR-GNTI---------A 1377
Query: 386 LQDHICKILSPLMEMRIRLIPSFPNADWRDLPNICVKLPRGQHSYTEKLKYNAKKKKSVC 445
L DHICK ++ L +R +LIP+ P ADW DLP V L
Sbjct: 1378 LTDHICKAMNELNLIRCKLIPTRPGADWHDLPKRKVTL---------------------- 1415
Query: 446 DCKSSSSCTSKGQKNTIIPWSLVHTASRNNNWQGVLGRLAWDESFDMTGQKNTIIPWSLV 505
S G+ +IP+ L +TA R+N W+G+ GRL
Sbjct: 1416 ---------SDGRVEEMIPFCLPNTAERHNGWKGLYGRL--------------------- 1445
Query: 506 HTASRNNNWQGVLGRLAWDESFDTIVTTPNPLNKQGKILHPEQDRVLTVREYARAQGFPD 565
+WQG +F T VT P P+ K G HPEQ R+LTVRE AR+QGFPD
Sbjct: 1446 -------DWQG---------NFPTSVTDPQPMGKVGMCFHPEQHRILTVRECARSQGFPD 1489
Query: 566 SYVFRGGICDMYKQIGNAVPPPLAKAIGYEIIKCI 600
SY F G I ++QIGNAVPPPLA A+G ++ + +
Sbjct: 1490 SYEFAGNINHKHRQIGNAVPPPLAFALGRKLKEAL 1524
>sp|Q94F88|CMT3_ARATH DNA (cytosine-5)-methyltransferase CMT3 OS=Arabidopsis thaliana
GN=CMT3 PE=1 SV=2
Length = 839
Score = 157 bits (397), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 127/433 (29%), Positives = 196/433 (45%), Gaps = 86/433 (19%)
Query: 184 HKGVSLPQKHEVDLIVAGPPCQGFSQLNRARELEK--SKLKNGLVFTFLSFCDLFQPKYI 241
+K LP VD++ GPPCQG S NR R L KN + +++ + +PK++
Sbjct: 440 YKSGILPLPGGVDVVCGGPPCQGISGHNRFRNLLDPLEDQKNKQLLVYMNIVEYLKPKFV 499
Query: 242 ILENVTGLVHFNKNEILQCIFHCLLKMNYQVTFDVLQSGNYGVAQSRNRVVILASKPGYK 301
++ENV ++ K + + LL+MNYQV ++ +G YG+AQ R R + + P
Sbjct: 500 LMENVVDMLKMAKGYLARFAVGRLLQMNYQVRNGMMAAGAYGLAQFRLRFFLWGALPSEI 559
Query: 302 LPSFPQPLHAF---SNQLFTINGNLVANKTSHAPYRS--ITVRDAISDLPRV--SQGANC 354
+P FP P H N + GN+VA H + + ++D ISDLP V S+ +
Sbjct: 560 IPQFPLPTHDLVHRGNIVKEFQGNIVAYDEGHTVKLADKLLLKDVISDLPAVANSEKRDE 619
Query: 355 YLFHNPPKTHFQRMMK----DGSRIHDIHINLRELLQDHICKILSPLMEMRIRLIPSFPN 410
+ P T FQ+ ++ + S + + +L DH L+ R+ +P
Sbjct: 620 ITYDKDPTTPFQKFIRLRKDEASGSQSKSKSKKHVLYDHHPLNLNINDYERVCQVPKRKG 679
Query: 411 ADWRDLPNI------CVKLPRGQHSYTEKLKYNAKKKKSVCDCKSSSSCTSKGQKNTIIP 464
A++RD P + VKL G+ E++K + K T++P
Sbjct: 680 ANFRDFPGVIVGPGNVVKLEEGK----ERVKLESGK--------------------TLVP 715
Query: 465 -WSLVHTASRNNNWQGVLGRLAWDESFDMTGQKNTIIPWSLVHTASRNNNWQGVLGRLAW 523
++L + ++ GRL WDE I+P
Sbjct: 716 DYALTYVDGKSCK---PFGRLWWDE----------IVP---------------------- 740
Query: 524 DESFDTIVTTPNPLNKQGKILHPEQDRVLTVREYARAQGFPDSYVFRGGICDMYKQIGNA 583
T+VT P N+ I+HPEQ+RVL++RE AR QGFPD Y G Y Q+GNA
Sbjct: 741 -----TVVTRAEPHNQV--IIHPEQNRVLSIRENARLQGFPDDYKLFGPPKQKYIQVGNA 793
Query: 584 VPPPLAKAIGYEI 596
V P+AKA+GY +
Sbjct: 794 VAVPVAKALGYAL 806
>sp|O49139|CMT1_ARATH Putative DNA (cytosine-5)-methyltransferase CMT1 OS=Arabidopsis
thaliana GN=CMT1 PE=5 SV=2
Length = 791
Score = 155 bits (393), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 122/419 (29%), Positives = 188/419 (44%), Gaps = 74/419 (17%)
Query: 189 LPQKHEVDLIVAGPPCQGFSQLNRARELEK--SKLKNGLVFTFLSFCDLFQPKYIILENV 246
LP V + GPPCQG S NR R E KN + FL D +P Y+++ENV
Sbjct: 402 LPLPGTVYTVCGGPPCQGISGYNRYRNNEAPLEDQKNQQLLVFLDIIDFLKPNYVLMENV 461
Query: 247 TGLVHFNKNEILQCIFHCLLKMNYQVTFDVLQSGNYGVAQSRNRVVILASKPGYKLPSFP 306
L+ F+K + + + MNYQ ++ +G+YG+ Q RNRV + A++P KLP +P
Sbjct: 462 VDLLRFSKGFLARHAVASFVAMNYQTRLGMMAAGSYGLPQLRNRVFLWAAQPSEKLPPYP 521
Query: 307 QPLHAFSNQLFTIN--GNLVANKTSHAPYR---SITVRDAISDLPRVSQG-ANCYLFHN- 359
P H + + T +L + + ++T+ DAISDLP V+ AN + +N
Sbjct: 522 LPTHEVAKKFNTPKEFKDLQVGRIQMEFLKLDNALTLADAISDLPPVTNYVANDVMDYND 581
Query: 360 -PPKTHFQRMM---KDGSRIHDIHINLRELLQDHICKILSPLMEMRIRLIPSFPNADWRD 415
PKT F+ + + + + + L DH +L R+ IP A++RD
Sbjct: 582 AAPKTEFENFISLKRSETLLPAFGGDPTRRLFDHQPLVLGDDDLERVSYIPKQKGANYRD 641
Query: 416 LPNICVKLPRGQHSYTEKLKYNAKKKKSVCDCKSSSSCTSKGQKNTIIPWSLVHTASRNN 475
+P + V + K + N + + + K KN + +++ ++
Sbjct: 642 MPGVLV--------HNNKAEINPRFRAKL-----------KSGKNVVPAYAISFIKGKS- 681
Query: 476 NWQGVLGRLAWDESFDMTGQKNTIIPWSLVHTASRNNNWQGVLGRLAWDESFDTIVTTPN 535
+ GRL W DE +T+VT
Sbjct: 682 --KKPFGRL-----------------WG--------------------DEIVNTVVTRAE 702
Query: 536 PLNKQGKILHPEQDRVLTVREYARAQGFPDSYVFRGGICDMYKQIGNAVPPPLAKAIGY 594
P N+ ++HP Q+RVL+VRE AR QGFPD Y G I + Y Q+GNAV P+ A+GY
Sbjct: 703 PHNQC--VIHPMQNRVLSVRENARLQGFPDCYKLCGTIKEKYIQVGNAVAVPVGVALGY 759
>sp|Q8LPU5|CMT3_MAIZE DNA (cytosine-5)-methyltransferase 3 OS=Zea mays GN=DMT105 PE=2
SV=1
Length = 915
Score = 154 bits (388), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 130/451 (28%), Positives = 202/451 (44%), Gaps = 82/451 (18%)
Query: 169 DCNLVLKSLLKGHTQHKGVSLPQKHEVDLIVAGPPCQGFSQLNRARELEK--SKLKNGLV 226
DC L ++ ++ + K + LP +VD+I GPPCQG S NR R ++ KN +
Sbjct: 488 DCPLKIREFVQEGRKRKILPLP--GDVDVICGGPPCQGISGFNRFRNRDEPLKDEKNKQM 545
Query: 227 FTFLSFCDLFQPKYIILENVTGLVHFNKNEILQCIFHCLLKMNYQVTFDVLQSGNYGVAQ 286
TF+ +PKY+++ENV ++ F + + CL+ M YQ ++ +G YG+ Q
Sbjct: 546 VTFMDIVAYLKPKYVLMENVVDILKFADGYLGKYALSCLVAMKYQARLGMMVAGCYGLPQ 605
Query: 287 SRNRVVILASKPGYKLPSFPQPLHAFSNQLFTINGN---LVANKTSHAPY--RSITVRDA 341
R RV + + LP +P P + + N +VA + P +++ + DA
Sbjct: 606 FRMRVFLWGALSSMVLPKYPLPTYDVVVRGGAPNAFSQCMVAYDETQRPSLKKALLLGDA 665
Query: 342 ISDLPRVS--QGANCYLFHNPPKTHFQRMMK-------DGSRIHDIHINLRELLQDHICK 392
SDLP+V Q + + PKT FQR ++ D S + + +LL +
Sbjct: 666 FSDLPKVENHQPNDVMEYGGSPKTEFQRYIRLGRKDMLDWSFGEEAGPDEGKLLDHQPLR 725
Query: 393 ILSPLMEMRIRLIPSFPNADWRDLPNICVKLPRGQHSYTEKLKYNAKKKKSVCDCKSSSS 452
+ + E R++ IP A++RDL + V G ++ E D +
Sbjct: 726 LNNDDYE-RVKQIPVKKGANFRDLKGVKV----GANNVVE------------WDPEVERV 768
Query: 453 CTSKGQKNTIIPWSLVHTASRNNNWQGVLGRLAWDESFDMTGQKNTIIPWSLVHTASRNN 512
S G K + +++ ++ GRL WDE+ +P
Sbjct: 769 YLSSG-KPLVPDYAMSFIKGKSLK---PFGRLWWDET----------VP----------- 803
Query: 513 NWQGVLGRLAWDESFDTIVTTPNPLNKQGKILHPEQDRVLTVREYARAQGFPDSYVFRGG 572
T+VT P N+ ILHP Q RVLT+RE AR QGFPD Y G
Sbjct: 804 ----------------TVVTRAEPHNQV--ILHPTQARVLTIRENARLQGFPDYYRLFGP 845
Query: 573 ICDMYKQIGNAVPPPLAKAIGYEIIKCIGNA 603
I + Y Q+GNAV P+A+A+GY C+G A
Sbjct: 846 IKEKYIQVGNAVAVPVARALGY----CLGQA 872
>sp|Q9AXT8|CMT1_MAIZE DNA (cytosine-5)-methyltransferase 1 OS=Zea mays GN=MET2A PE=1 SV=1
Length = 912
Score = 134 bits (336), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 124/451 (27%), Positives = 196/451 (43%), Gaps = 82/451 (18%)
Query: 169 DCNLVLKSLLKGHTQHKGVSLPQKHEVDLIVAGPPCQGFSQLNRARELEK--SKLKNGLV 226
DC ++ ++ HK LP +VD+I GPPCQG S NR R ++ KN +
Sbjct: 484 DCPQKIREFVQ--EGHKRKILPLPGDVDVICGGPPCQGISGFNRYRNRDEPLKDEKNKQM 541
Query: 227 FTFLSFCDLFQPKYIILENVTGLVHFNKNEILQCIFHCLLKMNYQVTFDVLQSGNYGVAQ 286
TF+ +PKY+++ENV ++ F + + CL+ M YQ ++ +G YG+ Q
Sbjct: 542 VTFMDIVAYLKPKYVLMENVVDILKFADGYLGKYALSCLVAMKYQARLGMMVAGCYGLPQ 601
Query: 287 SRNRVVILASKPGYKLPSFPQPLHAFSNQLFTINGN---LVANKTSHAPY--RSITVRDA 341
R RV + + LP +P P + + N +VA + P +++ + DA
Sbjct: 602 FRMRVFLWGALSSMVLPKYPLPTYDVVVRGGAPNAFSQCMVAYDETQKPSLKKALLLGDA 661
Query: 342 ISDLPRVS--QGANCYLFHNPPKTHFQRMMK-------DGSRIHDIHINLRELLQDHICK 392
ISDLP+V Q + + PKT FQR ++ D S + +LL +
Sbjct: 662 ISDLPKVQNHQPNDVMEYGGSPKTEFQRYIRLSRKDMLDWSFGEGAGPDEGKLLDHQPLR 721
Query: 393 ILSPLMEMRIRLIPSFPNADWRDLPNICVKLPRGQHSYTEKLKYNAKKKKSVCDCKSSSS 452
+ + E R++ IP A++RDL + V G ++ E + K S
Sbjct: 722 LNNDDYE-RVQQIPVKKGANFRDLKGVRV----GANNIVEWDPEIERVKLSSGKPLVPDY 776
Query: 453 CTSKGQKNTIIPWSLVHTASRNNNWQGVLGRLAWDESFDMTGQKNTIIPWSLVHTASRNN 512
S + ++ P+ GRL WDE+ +P ++V A +N
Sbjct: 777 AMSFIKGKSLKPF----------------GRLWWDET----------VP-TVVTRAEPHN 809
Query: 513 NWQGVLGRLAWDESFDTIVTTPNPLNKQGKILHPEQDRVLTVREYARAQGFPDSYVFRGG 572
++ P Q ++L T+RE AR QGFPD Y G
Sbjct: 810 Q----------------VIIHPT----QARVL--------TIRENARLQGFPDYYRLFGP 841
Query: 573 ICDMYKQIGNAVPPPLAKAIGYEIIKCIGNA 603
I + Y Q+GNAV P+A+A+GY C+G A
Sbjct: 842 IKEKYIQVGNAVAVPVARALGY----CLGQA 868
>sp|P50192|MTHA_HAEPH Modification methylase HphIA OS=Haemophilus parahaemolyticus
GN=hphIAM PE=3 SV=1
Length = 372
Score = 118 bits (295), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 83/277 (29%), Positives = 128/277 (46%), Gaps = 38/277 (13%)
Query: 118 LKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQECSVIQDDCNLVLKSL 177
L +DLFSG GG G +AG + SVE+E +Y ANF + V+Q D +
Sbjct: 45 LTYIDLFSGAGGFSLGFDRAGFHQ-LLSVEIEPHYCDTYRANFPDHQVLQQDLTTLSDDN 103
Query: 178 LKGHTQHKGVSLPQKHEVDLIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLSFCDLFQ 237
L H H+ +VD+++ GPPCQGFS + +N L F+ L Q
Sbjct: 104 LLRHINHR--------KVDVVIGGPPCQGFSMAGKIGRTFADDPRNHLFKEFVRVVKLTQ 155
Query: 238 PKYIILENVTGLVHFNKNEILQCIFHCLLKMNYQVTFDVLQSGNYGVAQSRNRVVILASK 297
PK+ ++ENV L N + I ++ Y+V VL + ++GV Q R+R+V + K
Sbjct: 156 PKFFVMENVARLFTHNSGKTRAEITEQFERLGYKVKCKVLNAADFGVPQLRSRIVFIGRK 215
Query: 298 PGYKLPSFPQPLHAFSNQLFTINGNLVANKTSHAPYRSITVRDAISDLPRVSQGANCYLF 357
G ++ +FP+P SH Y TV DAI P+++ G N +
Sbjct: 216 DGGEI-TFPEP--------------------SHTEYN--TVGDAIGHFPKLNAGENSLIL 252
Query: 358 HNPPKTHFQRMM------KDGSRIHDIHINLRELLQD 388
++ H +M+ K+G +DI +LR + D
Sbjct: 253 NHEAMNHSTQMLEKMSFVKNGGDRNDIPESLRPISGD 289
Score = 63.9 bits (154), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 38/57 (66%)
Query: 542 KILHPEQDRVLTVREYARAQGFPDSYVFRGGICDMYKQIGNAVPPPLAKAIGYEIIK 598
K+ H EQ+R LTVRE A Q FPD +VF G +Q+GNAVPP LA+AI ++K
Sbjct: 311 KVFHYEQNRALTVRELAALQSFPDDFVFLGKKIAQQQQVGNAVPPLLAQAIAEAVLK 367
>sp|P94147|MTA1_RUEGE Modification methylase AgeI OS=Ruegeria gelatinovora GN=ageIM PE=3
SV=1
Length = 429
Score = 116 bits (291), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 85/265 (32%), Positives = 126/265 (47%), Gaps = 24/265 (9%)
Query: 118 LKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQECSVIQDDCNLVLKSL 177
+K +DLF G GGL EG QAG + ++ + E A+Y N + D V
Sbjct: 1 MKTIDLFCGAGGLGEGFRQAGFSA-LYANDHETPALATYKENHPDAVCSTDSIETVDPKK 59
Query: 178 LKGHTQHKGVSLPQKHEVDLIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLSFCDLFQ 237
++ + GV+ Q VD+++ GPPCQGFS + R+ +N L + F + F+
Sbjct: 60 IR---EDLGVAPGQ---VDVVMGGPPCQGFSTYGQRRD---DDARNQLYVPYFGFVEEFR 110
Query: 238 PKYIILENVTGLVHFNKNEILQCIFHCLLKMNYQVTFDVLQSGNYGVAQSRNRVVILASK 297
PK ++ENV GL+ + +L + + Y L + YGV Q R RV I +
Sbjct: 111 PKAFLIENVVGLLSMSGGAVLADMVARAEALGYAADVVTLDACEYGVPQHRRRVFIFGAA 170
Query: 298 PGYKLPSFPQPLHA---FSNQLFTINGNLVANKTSHAPYRSITVRDAISDL------PRV 348
G ++ PQP H S + +L + S P ++TVRDAISDL PR
Sbjct: 171 DGQRIDP-PQPSHVNGKRSGVVLNDQPSLFFDGPSIQP--ALTVRDAISDLPDEVLVPRD 227
Query: 349 SQGANCYLFHNPPKTHFQRMMKDGS 373
+Q Y PPKT +QR+M+ S
Sbjct: 228 TQKPMEY--PEPPKTEYQRLMRGNS 250
Score = 61.6 bits (148), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 45/80 (56%), Gaps = 3/80 (3%)
Query: 520 RLAWDESFDTIVTTPNPLNKQGKILHPEQDRVLTVREYARAQGFPDSYVFRGGICDMYKQ 579
RL WD T+V + +HP DR ++VRE AR Q FPD+Y F G ++Q
Sbjct: 350 RLRWDAPSHTVVA--HMARDCSDFVHPGIDRFVSVREAARFQSFPDTYRFPGSQFRQFRQ 407
Query: 580 IGNAVPPPLAKAIGYEIIKC 599
IGNAVPP L +A+ E IK
Sbjct: 408 IGNAVPPLLGRAMA-ETIKV 426
>sp|Q94F87|CMT2_ARATH DNA (cytosine-5)-methyltransferase CMT2 OS=Arabidopsis thaliana
GN=CMT2 PE=2 SV=3
Length = 1295
Score = 113 bits (282), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 76/269 (28%), Positives = 129/269 (47%), Gaps = 18/269 (6%)
Query: 169 DCNLVLKSLLKGHTQHKGVSLPQKHEVDLIVAGPPCQGFSQLNRARELEK--SKLKNGLV 226
+C ++ + + K + LP + V +I GPPCQG S NR R ++ + +N +
Sbjct: 882 NCQDAIREFVTSGFKSKILPLPGR--VGVICGGPPCQGISGYNRHRNVDSPLNDERNQQI 939
Query: 227 FTFLSFCDLFQPKYIILENVTGLVHFNKNEILQCIFHCLLKMNYQVTFDVLQSGNYGVAQ 286
F+ + +P Y+++ENV ++ +K + + L+ M YQ ++ +G YG++Q
Sbjct: 940 IVFMDIVEYLKPSYVLMENVVDILRMDKGSLGRYALSRLVNMRYQARLGIMTAGCYGLSQ 999
Query: 287 SRNRVVILASKPGYKLPSFPQPLHAFSNQL-----FTINGNLVANKTSHAPYRSITVRDA 341
R+RV + + P LP FP P H + F N A +++ ++DA
Sbjct: 1000 FRSRVFMWGAVPNKNLPPFPLPTHDVIVRYGLPLEFERNVVAYAEGQPRKLEKALVLKDA 1059
Query: 342 ISDLPRVSQGANCYL--FHNPPKTHFQRMMKD------GSRIHDIHINLRELLQDHICKI 393
ISDLP VS + + + PKT FQR ++ GS I + + LL DH
Sbjct: 1060 ISDLPHVSNDEDREKLPYESLPKTDFQRYIRSTKRDLTGSAIDNCNKRTM-LLHDHRPFH 1118
Query: 394 LSPLMEMRIRLIPSFPNADWRDLPNICVK 422
++ R+ IP A++RDLP + V+
Sbjct: 1119 INEDDYARVCQIPKRKGANFRDLPGLIVR 1147
Score = 82.8 bits (203), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 40/79 (50%), Positives = 54/79 (68%), Gaps = 2/79 (2%)
Query: 518 LGRLAWDESFDTIVTTPNPLNKQGKILHPEQDRVLTVREYARAQGFPDSYVFRGGICDMY 577
RL WDE+ T++T P ++ +LHPEQDRVLT+RE AR QGFPD + F G I + Y
Sbjct: 1185 FARLWWDETVPTVLTVPTCHSQA--LLHPEQDRVLTIRESARLQGFPDYFQFCGTIKERY 1242
Query: 578 KQIGNAVPPPLAKAIGYEI 596
QIGNAV +++A+GY +
Sbjct: 1243 CQIGNAVAVSVSRALGYSL 1261
Score = 33.9 bits (76), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 58/139 (41%), Gaps = 17/139 (12%)
Query: 4 HVQWLVRPNDTILG------DKIQFDNSTLFLTNACESI--DLSVIKKTVCVDFVTNDSS 55
VQW R DTI+ DK + ST+ N + + ++V++ + V N
Sbjct: 614 RVQWFYRATDTIMERQATNHDKRRLFYSTVMNDNPVDCLISKVTVLQVSPRVGLKPNSIK 673
Query: 56 EEEILDNEHEEKDETIYTEYYRKTKDKHFVQPNARPLELAYILKIIHSKEFLPKFPMPLD 115
+ D E+ + T T KT + ++ A + I+ K F + P+
Sbjct: 674 SDYYFDMEYCVEYSTFQTLRNPKTSENK-LECCADVVPTESTESILKKKSFSGELPV--- 729
Query: 116 TPLKCLDLFSGCGGLMEGL 134
LDL+SGCGG+ GL
Sbjct: 730 -----LDLYSGCGGMSTGL 743
>sp|Q9ARI6|CMT2_MAIZE DNA (cytosine-5)-methyltransferase 2 OS=Zea mays GN=ZMET5 PE=2 SV=1
Length = 915
Score = 109 bits (272), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 77/269 (28%), Positives = 129/269 (47%), Gaps = 19/269 (7%)
Query: 169 DCNLVLKSLLKGHTQHKGVSLPQKHEVDLIVAGPPCQGFSQLNRARELEK--SKLKNGLV 226
DC L ++ ++ + K + LP +VD+I GPPCQG S NR R ++ KN +
Sbjct: 488 DCPLKIREFVQEGRKRKILPLP--GDVDVICGGPPCQGISGFNRFRNRDEPLKDEKNKQM 545
Query: 227 FTFLSFCDLFQPKYIILENVTGLVHFNKNEILQCIFHCLLKMNYQVTFDVLQSGNYGVAQ 286
TF+ +PKY+++ENV ++ F + + CL+ M YQ ++ +G YG+ Q
Sbjct: 546 VTFMDIVAYLKPKYVLMENVVDILKFADGYLGKYALSCLVAMKYQARLGMMVAGCYGLPQ 605
Query: 287 SRNRVVILASKPGYKLPSFPQPLHAFSNQLFTINGN---LVANKTSHAPY--RSITVRDA 341
R RV + + LP +P P + + N +VA + P +++ + DA
Sbjct: 606 FRMRVFLWGALSSMVLPKYPLPTYDVVVRGGAPNAFSQCMVAYDETQRPSLKKALLLGDA 665
Query: 342 ISDLPRVS--QGANCYLFHNPPKTHFQRMMK-------DGSRIHDIHINLRELLQDHICK 392
SDLP+V Q + + PKT FQR ++ D S + + +LL +
Sbjct: 666 FSDLPKVENHQPNDVMEYGGSPKTEFQRYIRLGRKDMLDWSFGEEAGPDEGKLLDHQPLR 725
Query: 393 ILSPLMEMRIRLIPSFPNADWRDLPNICV 421
+ + E R++ IP A++RDL + V
Sbjct: 726 LNNDDYE-RVKQIPVKKGANFRDLKGVKV 753
Score = 85.9 bits (211), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 45/86 (52%), Positives = 56/86 (65%), Gaps = 6/86 (6%)
Query: 518 LGRLAWDESFDTIVTTPNPLNKQGKILHPEQDRVLTVREYARAQGFPDSYVFRGGICDMY 577
GRL WD++ T+VT P N+ ILHP Q RVLT+RE AR QGFPD Y G I + Y
Sbjct: 793 FGRLWWDQTVPTVVTRAEPHNQV--ILHPTQARVLTIRENARLQGFPDYYRLFGPIKEKY 850
Query: 578 KQIGNAVPPPLAKAIGYEIIKCIGNA 603
Q+GNAV P+A+A+GY C+G A
Sbjct: 851 IQVGNAVAVPVARALGY----CLGQA 872
>sp|P52311|MTX2_XANOR Modification methylase XorII OS=Xanthomonas oryzae pv. oryzae
(strain KACC10331 / KXO85) GN=xorIIM PE=3 SV=2
Length = 424
Score = 103 bits (256), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 100/190 (52%), Gaps = 12/190 (6%)
Query: 121 LDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQECSVIQDDCNLVLKSLLKG 180
+DLF+G GGL G QAG +V+++ A++ NF +C+ + C V+
Sbjct: 7 IDLFAGAGGLSLGFEQAGF-DLVAAVDIDPIHCAAHKFNFPKCATV---CKSVVDVTGDE 62
Query: 181 HTQHKGVSLPQKHEVDLIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLSFCDLFQPKY 240
+ G+ K ++D+++ G PCQGFS + + R L+ S+ N LV ++ +PKY
Sbjct: 63 LRRIAGIG---KRDIDIVIGGAPCQGFSLIGK-RALDDSR--NQLVHHYVRVVMELKPKY 116
Query: 241 IILENVTGLVHFNKNEILQCIFHCLLKMNYQVTFD--VLQSGNYGVAQSRNRVVILASKP 298
+ ENV GL + L+ + Y V D VL + +YGV Q R R++++ ++
Sbjct: 117 FVFENVKGLTVGKHRQFLKEVIEAFQNGGYDVVTDYRVLNAADYGVPQDRRRLILMGARK 176
Query: 299 GYKLPSFPQP 308
G LP++P+P
Sbjct: 177 GLPLPAYPEP 186
Score = 57.8 bits (138), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 42/69 (60%), Gaps = 7/69 (10%)
Query: 532 TTPNPLNKQGKILHPEQDRVLTVREYARAQGFPDSYVFRGGICDMYKQIGNAVPPPLAKA 591
T+P P+ HP RV+TVRE AR +PD + F ++QIGN+VPP LA+A
Sbjct: 303 TSPRPI-------HPTVPRVITVREAARLHSYPDWFRFHATKWHGFRQIGNSVPPLLARA 355
Query: 592 IGYEIIKCI 600
+G +I+K +
Sbjct: 356 VGGQIMKAL 364
>sp|P09795|MTS1_SALIN Modification methylase SinI OS=Salmonella infantis GN=sinIM PE=3
SV=1
Length = 461
Score = 98.2 bits (243), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 79/276 (28%), Positives = 131/276 (47%), Gaps = 50/276 (18%)
Query: 119 KCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQECSVIQDDCNLVLKSLL 178
K L FSG GL G+ QAG + + E++++ + +N ++I D + + +L
Sbjct: 76 KALSFFSGAMGLDLGIEQAGF-ETLLASEIDKAARDTILSNRPNMALIGDIRDYTTEDIL 134
Query: 179 KGHTQHKGVSLPQKHEVDLIVAGPPCQGFSQLNRARELEKSKLKNGLVFT-FLSFCDLFQ 237
K GVS +E+DLI+ GPPCQ FS + LE + G VF +L +
Sbjct: 135 K----LAGVS--SGNEIDLIMGGPPCQAFSTAGKRLGLEDER---GNVFIKYLDVALDIR 185
Query: 238 PKYIILENVTGLV-----HFNKNE----------------ILQCIFHCLLKMNYQVTFDV 276
PKYI++ENV GL+ H NE +L I + Y V+F++
Sbjct: 186 PKYIVIENVRGLLSAPMKHRPHNERGEGLPPLKSEEQPGGVLHYIIRIIKSAGYSVSFNL 245
Query: 277 LQSGNYGVAQSRNRVVILASKPGYKLPSFPQPLHAFSNQLFTINGNLVANKTSHAPYRSI 336
S N+GV Q R RV+I+ S+ G ++P F QP H + K + + I
Sbjct: 246 YNSANFGVPQIRERVIIICSRDGSRVP-FLQPTH--------------SEKGEYGLPKWI 290
Query: 337 TVRDAISDLPRVSQGANCYLFHNPPKTHFQRMMKDG 372
T+R+ I++L ++ + ++ + + R++K+G
Sbjct: 291 TLRETITNLKNIT---HEHVLFPEKRLKYYRLLKEG 323
Score = 67.0 bits (162), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 50/82 (60%), Gaps = 2/82 (2%)
Query: 516 GVLGRLAWDESFDTIVTTPNPLNKQGKILHPEQDRVLTVREYARAQGFPDSYVFRGGICD 575
G L R+AWD T+VT +P + HP++ R L+V+EY Q FP+ +V +G + D
Sbjct: 350 GFLRRVAWDRPSPTLVT--HPAMPATDLAHPDELRPLSVQEYKVIQQFPEEWVIKGKLLD 407
Query: 576 MYKQIGNAVPPPLAKAIGYEII 597
Y+Q+GNAVP L A+G I+
Sbjct: 408 KYRQLGNAVPIGLGLAVGKNIL 429
>sp|P34882|MTAA_SYNP2 Modification methylase AquI subunit alpha OS=Synechococcus sp.
(strain ATCC 27264 / PCC 7002 / PR-6) GN=aquIMA PE=3
SV=1
Length = 248
Score = 97.4 bits (241), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 72/236 (30%), Positives = 116/236 (49%), Gaps = 24/236 (10%)
Query: 119 KCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQECSVIQDDCNLVLKSLL 178
K + LFSG GG+ G AG + +VE + S + N + VI+ D + ++
Sbjct: 4 KLISLFSGAGGMDIGFHAAGFST-AVAVEQDPSCCNTLRLNMPDTPVIEGDITSITTQVI 62
Query: 179 KGHTQHKGVSLPQKHEVDLIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLSFCDLFQP 238
+ + E+DL++ GPPCQ FS + ++ + LV FL P
Sbjct: 63 LEAAKVNPL------EIDLVIGGPPCQSFSLAGKRMGMDDP--RGMLVLEFLRVVREALP 114
Query: 239 KYIILENVTGLVHFNKNEILQCIF--------HCLLKMNYQVTFDVLQSGNYGVAQSRNR 290
K ++ENV G+++++K + L+ I + + Y V++ VL + ++GV Q R R
Sbjct: 115 KCFVMENVKGMINWSKGKALEAIMTEASQPIKYAGKEYKYAVSYHVLNAADFGVPQFRER 174
Query: 291 VVILASKPGYKLPSFPQPLHAFSNQLFTINGNLVANKTSHAPYRSITVRDAISDLP 346
V I+ ++ G K FP+P H SNQ I +L + PY+ TV+DAIS LP
Sbjct: 175 VFIVGNRLG-KTFQFPEPTHGPSNQARQI--DLFGKQLK--PYK--TVQDAISTLP 223
>sp|P05302|MTD1_DESNO Modification methylase DdeI OS=Desulfomicrobium norvegicum (strain
DSM 1741 / NCIMB 8310) GN=ddeIM PE=3 SV=1
Length = 415
Score = 97.1 bits (240), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 76/271 (28%), Positives = 127/271 (46%), Gaps = 36/271 (13%)
Query: 118 LKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQECSVIQDDCNLVLKSL 177
+ +DLF+GCGG G AG ++E + + +Y N SVI +D +
Sbjct: 1 MNIIDLFAGCGGFSHGFKMAGY-NSILAIEKDLWASQTYSFNNPNVSVITEDITTLDPGD 59
Query: 178 LKGHTQHKGVSLPQKHEVDLIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLSFCDLFQ 237
LK +S+ +VD I+ GPPCQGFS L+ R+ + +N L F+ F F
Sbjct: 60 LK-------ISV---SDVDGIIGGPPCQGFS-LSGNRD--QKDPRNSLFVDFVRFVKFFS 106
Query: 238 PKYIILENVTGLVHF---NKNEILQCIFHCLLKMNYQVTFDVLQSGNYGVAQSRNRVVIL 294
PK+ ++ENV G++ ++ + I + Y+V +L + +YGV QSR RV +
Sbjct: 107 PKFFVMENVLGILSMKTKSRQYVKDIIAEEFSNVGYKVCVIILNACDYGVPQSRQRVFFI 166
Query: 295 ASKPGYKLPSFPQPLHAFSNQLFTINGNLVANKTSHAPYRSITVRDAISDLPRVSQGANC 354
K +PL+ Q+ T ++ ++ + ++ +AISDLP + G
Sbjct: 167 GLKSD-------RPLN---QQILTPPSKVIESEYT-------SLEEAISDLPVIEAGEGG 209
Query: 355 YLFHNP--PKTHFQRMMKDGSRIHDIHINLR 383
+ P P+ +Q M+ GS H+ +R
Sbjct: 210 EVQDYPVAPRNKYQENMRKGSTCVYNHVAMR 240
Score = 59.3 bits (142), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 38/65 (58%), Gaps = 8/65 (12%)
Query: 540 QGKILHPEQDRVLTVREYARAQGFPDSYVFRGGICDM--------YKQIGNAVPPPLAKA 591
Q +HP +R T RE AR Q FPD+Y+F+G M Y+QIGNAVPP LA+A
Sbjct: 302 QSNFIHPFYNRNFTAREGARIQSFPDTYIFQGKRTTMSWEKHLSQYQQIGNAVPPLLAQA 361
Query: 592 IGYEI 596
+ I
Sbjct: 362 LAERI 366
>sp|O52702|MTA1_ACEPA Modification methylase ApaLI OS=Acetobacter pasteurianus GN=apaLIM
PE=3 SV=1
Length = 429
Score = 91.7 bits (226), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 71/280 (25%), Positives = 125/280 (44%), Gaps = 31/280 (11%)
Query: 120 CLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQECSVIQDDCN-LVLKSLL 178
+ LF+G GG G QAG+ KP + E+ +Y N + C+ L L ++
Sbjct: 7 VVSLFAGAGGFSSGFSQAGL-KPLFGAEINADACQTYQEN------VGSPCHQLDLSTVD 59
Query: 179 KGHTQHKGVSLPQKHEVDLIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLSFCDLFQP 238
H + L +++ GPPCQGFS A + +N L+F +L+ + P
Sbjct: 60 PSHIEM----LTGGKRPFVVIGGPPCQGFST---AGPRNFADPRNLLIFNYLNIVERLSP 112
Query: 239 KYIILENVTGLVHFNKNEILQCIFHCLLKMNYQVTFDVLQSGNYGVAQSRNRVVILASKP 298
+++I ENV GL+ L + + M Y V + YGV Q+R RV+I+ ++
Sbjct: 113 RWLIFENVEGLLTSGGGRDLARLVREFVDMGYSVRLQKVNLAAYGVPQTRKRVLIIGNRL 172
Query: 299 GYKLPSFPQPLHAFSNQLFTINGNLVANKTSHAPYRSITVRDAISDLPRVSQGANCYLFH 358
G FP+ L++F + A K S P + ++ +A++ L + + + +
Sbjct: 173 GIDF-QFPEELYSFDSG--------KAKKASGKPL-APSLAEAVAGLGPAASDKDALVPY 222
Query: 359 --NPPKTHFQRMMKDGSRI----HDIHINLRELLQDHICK 392
+ P F M+ G+R+ H + + E +Q + K
Sbjct: 223 ASSEPVNAFDARMRAGNRVEVVTHHVRVEAAERMQVELLK 262
Score = 50.8 bits (120), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 33/51 (64%)
Query: 542 KILHPEQDRVLTVREYARAQGFPDSYVFRGGICDMYKQIGNAVPPPLAKAI 592
+ +HP + R LT+RE AR Q FPD Y + G + +QIGNAVPP A+ +
Sbjct: 322 EFIHPTEHRPLTIRECARIQTFPDKYRWVGNNASVIQQIGNAVPPLAAERL 372
>sp|P08455|MTP2_NEIGO Modification methylase NgoPII OS=Neisseria gonorrhoeae GN=ngoPIIM
PE=3 SV=2
Length = 330
Score = 91.3 bits (225), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 65/229 (28%), Positives = 109/229 (47%), Gaps = 36/229 (15%)
Query: 118 LKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQECSVIQDDCNLVLKSL 177
+K + LFSGCGGL G +AG P + E +++ A++ AN + +I+ D +
Sbjct: 1 MKIISLFSGCGGLDLGFEKAGFEIPA-ANEYDKTIWATFKANHPKTHLIEGDIRKI---- 55
Query: 178 LKGHTQHKGVSLPQKHEVDLIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLSFCDLFQ 237
K P+ E+D I+ GPPCQ +S+ R ++ ++ + L F ++ Q
Sbjct: 56 -------KEEDFPE--EIDGIIGGPPCQSWSEAGALRGIDDARGQ--LFFDYIRILKSKQ 104
Query: 238 PKYIILENVTGLVHFNKNEILQCIFHCLLKMNYQVTFDVLQSGNYGVAQSRNRVVILASK 297
PK+ + ENV+G++ N +Q + Y VT + + +YGVAQ R RV + +
Sbjct: 105 PKFFLAENVSGMLANRHNGAVQNLLKMFDGCGYDVTLTMANAKDYGVAQERKRVFYIGFR 164
Query: 298 PGYKLP-SFPQPLHAFSNQLFTINGNLVANKTSHAPYRSITVRDAISDL 345
++ SFP+ G+ V +K IT++D I DL
Sbjct: 165 KDLEIKFSFPK-------------GSTVEDKD------KITLKDVIWDL 194
Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/52 (51%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 550 RVLTVREYARAQGFPDSYVF-RGGICDMYKQIGNAVPPPLAKAIGYEIIKCI 600
R +TVRE AR QGFPD++ F + D YK IGNAVP LA I I K +
Sbjct: 277 RRMTVREVARIQGFPDNFKFIYQNVNDAYKMIGNAVPVNLAYEIAAAIKKTL 328
>sp|P25265|MTD2_HERAU Modification methylase HgiDII OS=Herpetosiphon aurantiacus
GN=hgiDIIM PE=3 SV=1
Length = 354
Score = 89.0 bits (219), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 119/485 (24%), Positives = 171/485 (35%), Gaps = 162/485 (33%)
Query: 121 LDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDAN----FQECSVIQDDCNLVLKS 176
+DLF G GGL GL G ++ + S +Y+ N F E S+ + D + +
Sbjct: 6 IDLFCGVGGLTHGLILEGFGVLA-GIDNDPSCKYAYEQNNRTRFIEKSISEVDGREL--N 62
Query: 177 LLKGHTQHKGVSLPQKHEVDLIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLSFCDLF 236
L + QHK ++V PCQ FSQ + ++ K L+ F
Sbjct: 63 ALYPNNQHK-----------ILVGCAPCQDFSQYTKK---SRTGTKWQLLTEFSRLIREI 108
Query: 237 QPKYIILENVTGLVHFNKNEILQCIFHCLLKMNYQVTFDVLQSGNYGVAQSRNRVVILAS 296
+P I +ENV + FN+ E+ L ++ Y V+ V+ +YG+ Q R+R+V+ A+
Sbjct: 109 EPDIISMENVPEVRTFNRGEVFNNFIQSLEQLGYHVSHSVVHCPDYGIPQQRDRLVLFAA 168
Query: 297 KPGYKLPSFPQPLHAFSNQLFTINGNLVANKTSHAPYRSITVRDAISDLPRVSQGANCYL 356
K G + P +H P TVRD I L G
Sbjct: 169 KQGV-IKIIP---------------------PTHTPENYRTVRDVIGSLATNYSGG---- 202
Query: 357 FHNPPKTHFQ-RMMKDGSRIHDIHINLRELLQDHICKILSPLMEMRIRLIPSFPNADWRD 415
H++ M SR+ D INLR R+ S P W D
Sbjct: 203 -------HWEGDSMHAASRLED--INLR-------------------RIQHSVPGGTWAD 234
Query: 416 LPNICVKLPRGQHSYTEKLKYNAKKKKSVCDCKSSSSCTSKGQKNTIIPWSLVHTASRNN 475
P E+L + +C S S G
Sbjct: 235 WP--------------EEL---------IAECHKKESGESYGS----------------- 254
Query: 476 NWQGVLGRLAWDESFDMTGQKNTIIPWSLVHTASRNNNWQGVLGRLAWDESFDTIVTTPN 535
V GR+ WD+ + P TI T N
Sbjct: 255 ----VYGRMEWDK----------VAP---------------------------TITTQCN 273
Query: 536 PLNKQGKILHPEQDRVLTVREYARAQGFPDSYVF----RGGICDMYKQIGNAVPPPLAKA 591
G+ HPEQDR +++RE A Q FP SY F + + +QIGNAVP L +
Sbjct: 274 GYGN-GRFGHPEQDRAISLREAALLQTFPRSYQFAPEGQLKFKTVSRQIGNAVPVALGRV 332
Query: 592 IGYEI 596
I I
Sbjct: 333 IAKSI 337
>sp|Q8EL95|MT36_OCEIH Putative modification methylase OB3336 OS=Oceanobacillus iheyensis
(strain DSM 14371 / JCM 11309 / KCTC 3954 / HTE831)
GN=OB3336 PE=3 SV=1
Length = 460
Score = 87.4 bits (215), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 73/298 (24%), Positives = 144/298 (48%), Gaps = 40/298 (13%)
Query: 119 KCLDLFSGCGGLMEGLCQAGVAKPCWSVELER--SEAASYDANFQECSVIQDDCNLVLKS 176
+ +DLFSGCGGL G AG +EL+R S+ AS++ ++++ + N + +
Sbjct: 16 EVVDLFSGCGGLALGFQLAGF-NIRKGIELDRDASDVASFNLHWRQGKHDRHLNNDI--T 72
Query: 177 LLKGHTQHKGVSLPQKHEVDLIVAGPPCQGFSQLNRAR-------ELEKSKLKNGLVFTF 229
LL + + L +K+++ +++ GPPCQ +S++ RA+ +++ + L F
Sbjct: 73 LLSANEFYN--DLDRKNDL-IVIGGPPCQAYSKIGRAKLKSLGEERRQENDARGKLYENF 129
Query: 230 LSFCDLFQPKYIILENVTGLVHFNKNEILQCIFHCLLKMNYQVTFDVLQSGNYGVAQSRN 289
L + I++ENV V++ I + L+ Y + VL + ++GV Q+R
Sbjct: 130 LDYALHVDANVIVMENVPEAVNYGGVNIPDTVCDILINKGYDAIWTVLNAADFGVPQTRV 189
Query: 290 RVVILASKPGY-KLPSFPQPLHA--FSNQLFTINGNLVANKTSHAPYRS----------- 335
R+ ++A K K+ P+P H + + ++N + ++ ++ Y
Sbjct: 190 RLFVMAIKKDIGKIKFIPEPTHKPHINVKRQSVNVRWMQSEIRNSKYYKQPNIPDETLSD 249
Query: 336 -ITVRDAISDLPRV----SQGANCYL------FHNPPKTHFQRMMKDGSRIHDIHINL 382
+TV DAI DLP + +Q Y + +PP+ FQ++M+ +++ + N+
Sbjct: 250 WVTVGDAIGDLPNLFPVYNQKYKNYKPMMMKEYKSPPQNTFQKLMRINNKVDKVTGNM 307
Score = 62.0 bits (149), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 38/57 (66%)
Query: 544 LHPEQDRVLTVREYARAQGFPDSYVFRGGICDMYKQIGNAVPPPLAKAIGYEIIKCI 600
LHP + R ++VRE AR Q FPD ++F + +KQIGNAVPP LAKAI + K I
Sbjct: 399 LHPREPRGISVREAARLQSFPDDFLFDCSMGAAFKQIGNAVPPLLAKAIAEAMKKNI 455
>sp|O33481|MTP1_PSYTA Modification methylase PspPI OS=Psychrobacter sp. (strain TA137)
GN=pspPIM PE=3 SV=1
Length = 416
Score = 87.0 bits (214), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 47/90 (52%), Positives = 58/90 (64%), Gaps = 3/90 (3%)
Query: 516 GVLGRLAWDESFDTIVTTPNPLNKQGKILHPEQDRVLTVREYARAQGFPDSYVFRGGICD 575
G+ RL+WDE T+V TP KQ + HP + R LT REYAR Q FPD + F+G +
Sbjct: 325 GMARRLSWDEPSLTLVCTPA--QKQTERCHPSESRPLTTREYARIQTFPDDWEFKGSVGQ 382
Query: 576 MYKQIGNAVPPPLAKAIGYEIIKCIGNAVP 605
+YKQIGNAVP LA AIG II+ + NA P
Sbjct: 383 IYKQIGNAVPVNLALAIGKAIIRML-NAAP 411
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 71/165 (43%), Gaps = 22/165 (13%)
Query: 147 ELERSEAASYDANFQECSVIQDDCNLVLKSLLKGHTQHKGVSLPQKHEVDLIVAGPPCQG 206
E ++ A+ AN +VI+DD V + L G +VDL+ G PCQ
Sbjct: 105 EKDKYACATLRANRPNWNVIEDDIENVDFTHLNG-------------KVDLLTGGFPCQP 151
Query: 207 FSQLNRARELEKSKLKNGLVFTFLSFCDLFQPKYIILENVTGLVHFNKNEILQCIFHCLL 266
FS ++L L+ LVF +PK + ENV GL + L I L
Sbjct: 152 FSYA--GKQLGFEDLRGTLVFEMARAIKEIKPKVFLAENVKGLAENDGGRTLSIIIKVLE 209
Query: 267 KMNYQV-TFDVLQSGNYGVAQSRNRVVI------LASKPGYKLPS 304
+ Y++ +V ++ Y V Q R R++I L K Y+ PS
Sbjct: 210 DLGYKILEKEVYKAIFYKVPQKRERLIIIGVRTDLYDKLAYEKPS 254
>sp|O34939|YDIO_BACSU Probable BsuMI modification methylase subunit YdiO OS=Bacillus
subtilis (strain 168) GN=ydiO PE=2 SV=1
Length = 427
Score = 82.0 bits (201), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 59/186 (31%), Positives = 90/186 (48%), Gaps = 9/186 (4%)
Query: 118 LKCLDLFSGCGGLMEGL---CQAGVAKPCWSVELERSEAA--SYDANFQECSVIQDDCNL 172
+ DLFSGCGGL G+ C+A P +S + +EAA Y+ NF + +
Sbjct: 84 INIADLFSGCGGLSLGVWEACRALGINPRFSFACDLNEAALSVYEKNFSPDFSLNESIEK 143
Query: 173 VLKSLLKGHTQHKGVSLPQK-HEVDLIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLS 231
+ L + + K ++D I+AGPPCQG S LN + +N L+
Sbjct: 144 HINGELGAPLTVEEQRIKDKVKKIDFILAGPPCQGHSDLN--NHTRRKDPRNALLMRVSR 201
Query: 232 FCDLFQPKYIILENVTGLVHFNKNEILQCIFHCLLKMNYQVTFDVLQSGNYGVAQSRNRV 291
+LFQP +++ENV G++H +K+ + + L Y VL + GV+Q+R R
Sbjct: 202 VIELFQPSSVLVENVPGIIH-DKSGSFKEFKNHLKTQGYYFDEIVLNAEKLGVSQARRRY 260
Query: 292 VILASK 297
I ASK
Sbjct: 261 FIFASK 266
Score = 44.3 bits (103), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
Query: 513 NWQGVLGRLAWDESFDTIVTTPNPLNKQGKILHPEQDRVLTVREYARAQGFPDSYVFRGG 572
+++ V GR+ WD TI T QG+ +H R +T E AR Q FPD + F
Sbjct: 342 SYKSVYGRMYWDRPAPTI-TRGFGSTGQGRFVHSLLKRTITPHEAARIQFFPDFFNFGDL 400
Query: 573 ICDMYKQ-IGNAVPPPLA 589
Y+ IGNAVP L+
Sbjct: 401 RRRQYQDVIGNAVPSKLS 418
>sp|Q59606|MTF7_NEIGO Modification methylase NgoFVII OS=Neisseria gonorrhoeae GN=ngoFVIIM
PE=3 SV=1
Length = 374
Score = 81.6 bits (200), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 74/265 (27%), Positives = 115/265 (43%), Gaps = 40/265 (15%)
Query: 119 KCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQECSVIQDDCNLVLKSLL 178
K L LFSGCGGL G QAG + W+ + S+ N + ++
Sbjct: 17 KILSLFSGCGGLDLGFHQAG-CETVWANDFSHWACESFRKNIGDV-------------IV 62
Query: 179 KGHTQHKGVSLPQKHEVDLIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLSFCDLFQP 238
+G + + P + D+I+ G PCQ FS + + LE + L +FL F + +P
Sbjct: 63 EGDIEQINPNDPTIPDCDIILGGFPCQDFSMIWKQPGLEGER--GNLYKSFLRFVNAKKP 120
Query: 239 KYIILENVTGLVHFNKNEILQCIFHCLLKMNYQVTFDVLQSGNYGVAQSRNRVVILASK- 297
K + ENV GL+ NK + +Q I Y V +V +GV Q R RV+I+ +
Sbjct: 121 KVFVAENVKGLLTANKKKAIQQIITDFENCGYYVQANVYNFAEFGVPQFRERVLIVGVRL 180
Query: 298 -PGYKLPSFPQPLHAFSNQLFTINGNLVANKTSHAPYRSITVRDAISDLPRVSQGANCYL 356
G+ P+P H + + PY +T AIS++P+ +N L
Sbjct: 181 DTGFDF-RHPEPTHNETGE------------NGLKPY--VTAGQAISNIPQ--NASNNEL 223
Query: 357 FHNPPKTHFQRMMK---DGSRIHDI 378
KT +RM++ +G DI
Sbjct: 224 LKISDKT--RRMLELIPEGGNFTDI 246
Score = 47.8 bits (112), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 31/52 (59%), Gaps = 4/52 (7%)
Query: 545 HPEQDRVLTVREYARAQGFPDSYVFRGGICDMYKQIGNAVPP----PLAKAI 592
H + R T RE AR Q FPD + F G ++ +QIGNAVPP LAK+I
Sbjct: 286 HFPEPRAFTNRERARLQSFPDDFEFVGSTTEVRRQIGNAVPPQGVVELAKSI 337
>sp|P50196|MTE8_ECOLX Modification methylase Eco47II OS=Escherichia coli GN=eco47IIM PE=3
SV=1
Length = 417
Score = 81.3 bits (199), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/85 (48%), Positives = 54/85 (63%), Gaps = 2/85 (2%)
Query: 516 GVLGRLAWDESFDTIVTTPNPLNKQGKILHPEQDRVLTVREYARAQGFPDSYVFRGGICD 575
G+ RL+WDE ++ T P KQ + HPE+ R LTVREYAR Q FPD +VF G +
Sbjct: 329 GMARRLSWDEP--SLTLTCAPAQKQTERCHPEETRPLTVREYARIQTFPDEWVFEGPMSA 386
Query: 576 MYKQIGNAVPPPLAKAIGYEIIKCI 600
YKQIGNAVP L+ A+G ++ +
Sbjct: 387 KYKQIGNAVPVNLSFAVGKSVVHLL 411
Score = 72.0 bits (175), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/207 (27%), Positives = 97/207 (46%), Gaps = 24/207 (11%)
Query: 98 LKIIHSKEFLPKFPMPLDTPLK-----CLDLFSGCGGLMEGLCQAGVAKPCWSVELERSE 152
LK +FL K P +T + L+LF+G GG+ GL +AG+ K E++
Sbjct: 56 LKNFEQAQFLFKSQWPDETKISNNVYTVLELFAGAGGMALGLEKAGL-KSVLLNEIDSHA 114
Query: 153 AASYDANFQECSVIQDDCNLVLKSLLKGHTQHKGVSLPQKHEVDLIVAGPPCQGFSQLNR 212
+ N E +V++ D + V + P ++ VD++ G PCQ FS +
Sbjct: 115 CKTLRKNRPEWNVVEGDVSQVDFT-------------PYRNTVDVLAGGFPCQAFSYAGK 161
Query: 213 ARELEKSKLKNGLVFTFLSFCDLFQPKYIILENVTGLVHFNKNEILQCIFHCLLKMNYQV 272
E ++ L F F PK ++ ENV GL++ + L+ I + + + Y +
Sbjct: 162 KLGFEDTR--GTLFFEFARAAKEINPKVLLAENVRGLLNHDAGRTLETIKNIITDLGYTL 219
Query: 273 TFD--VLQSGNYGVAQSRNRVVILASK 297
F+ VL++ Y V Q R R++I+A +
Sbjct: 220 -FEPRVLKAIFYKVPQKRERLIIVAVR 245
>sp|P17044|MTBF_BACIU Modification methylase BsuFI OS=Bacillus subtilis GN=hsdFM PE=3
SV=1
Length = 409
Score = 81.3 bits (199), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 101/214 (47%), Gaps = 20/214 (9%)
Query: 118 LKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQECSVIQDDCNLVLKSL 177
L +DLF+G GG+ G + K +S E ++ A +Y+AN+ E
Sbjct: 101 LTFIDLFAGIGGIRLGF-EDKYTKCVFSSEWDKYAAQTYEANYGE--------------- 144
Query: 178 LKGHTQHKGVSLPQKHEVDLIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLSFCDLFQ 237
K H ++ + D+++AG PCQ FS + + RE + +N ++F L Q
Sbjct: 145 -KPHGDITKINENDIPDQDVLLAGFPCQPFSNIGK-REGFAHERRN-IIFDVLRILKKKQ 201
Query: 238 PKYIILENVTGLVHFNKNEILQCIFHCLLKMNYQVTFDVLQSGNYGVAQSRNRVVILASK 297
PK +LENV GL+ + + I L + Y V ++V+ + N+G+ Q R R+VI+
Sbjct: 202 PKMFLLENVKGLLTNDNGNTFRVILDNLKSLGYSVFYEVMDAQNFGLPQRRERIVIVGFH 261
Query: 298 PGYKLPSFPQPLHAFSNQLFTINGNLVANKTSHA 331
P + F P N++ IN L N T ++
Sbjct: 262 PDLGINDFSFPKGNPDNKV-PINAILEHNPTGYS 294
>sp|P50185|MTD5_DACSA Modification methylase DsaV OS=Dactylococcopsis salina GN=dsaVM
PE=3 SV=1
Length = 351
Score = 80.9 bits (198), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 95/196 (48%), Gaps = 22/196 (11%)
Query: 118 LKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQECSVIQDDCNLVLKSL 177
LK +DLF+G GG+ + G K +S E+++ +Y+ANF E
Sbjct: 6 LKFIDLFAGIGGMRIPFEELG-GKCVFSSEIDKHCQRTYEANFGEMPT------------ 52
Query: 178 LKGHTQHKGVSLPQKHEVDLIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLSFCDLFQ 237
T+ S+P DL++AG PCQ FSQ R + + + L F + +
Sbjct: 53 -GDITKLSADSIPYH---DLLLAGFPCQAFSQGGRKQGFQDER--GQLFFQVAKILNDHR 106
Query: 238 PKYIILENVTGLVHFNKNEILQCIFHCLLKMNYQVTFDVLQSGNYGVAQSRNRVVILASK 297
P+ I+LENV GL +K LQ I + L K+NY V++ ++ + ++ + Q R R+ I+ +
Sbjct: 107 PQAILLENVKGLRGHDKGRTLQMILYVLEKLNYVVSWKIISATDFNLPQKRERIFIVGFQ 166
Query: 298 PGYK---LPSFPQPLH 310
+ FP+P+
Sbjct: 167 DKNNKNLIFDFPKPIE 182
Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 33/51 (64%)
Query: 550 RVLTVREYARAQGFPDSYVFRGGICDMYKQIGNAVPPPLAKAIGYEIIKCI 600
RVLT RE AR QGFP+S+V C ++Q GN+VP + +AI +++ I
Sbjct: 259 RVLTPRECARLQGFPESFVIPVSDCQAWRQFGNSVPVSVIRAIAQKMLSYI 309
>sp|P23737|MTS9_STAAU Modification methylase Sau96I OS=Staphylococcus aureus GN=sau96IM
PE=3 SV=1
Length = 430
Score = 80.9 bits (198), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 55/83 (66%), Gaps = 2/83 (2%)
Query: 515 QGVLGRLAWDESFDTIVTTPNPLNKQGKILHPEQDRVLTVREYARAQGFPDSYVFRGGIC 574
+G+ R++WDE T+ T+P+ KQ + HP++ R ++REYAR Q FPD + F GG+
Sbjct: 343 RGMARRISWDEPCLTLTTSPS--QKQTERCHPDETRPFSIREYARIQSFPDEWEFSGGVG 400
Query: 575 DMYKQIGNAVPPPLAKAIGYEII 597
Y+QIGNAVP LAK IG ++
Sbjct: 401 AQYRQIGNAVPVNLAKYIGKSLV 423
Score = 72.4 bits (176), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 75/151 (49%), Gaps = 12/151 (7%)
Query: 145 SVELERSEAASYDANFQECSVIQDDCNLVLKSLLKGHTQHKGVSLPQKHEVDLIVAGPPC 204
+VE++++ A + N + VI++D + +L + + E+D++ G PC
Sbjct: 125 AVEIDKNAAETLRINRPKWKVIENDIEFIADNLDEFIDE----------EIDILSGGYPC 174
Query: 205 QGFSQLNRARELEKSKLKNGLVFTFLSFCDLFQPKYIILENVTGLVHFNKNEILQCIFHC 264
Q FS + + + L + + +PK I ENV GLV+ + + L+ +
Sbjct: 175 QTFSYAGKRNGF--ADTRGTLFYPYSKILSKLKPKAFIAENVRGLVNHDDGKTLEVMLKV 232
Query: 265 LLKMNYQVTFDVLQSGNYGVAQSRNRVVILA 295
+K Y+V +++L S NY VAQ R R+VI+
Sbjct: 233 FIKEGYEVYWNILNSWNYDVAQKRERIVIIG 263
>sp|P43420|MTB6_BACSF Modification methylase Bsp6I OS=Bacillus sp. (strain RFL6)
GN=bsp6IM PE=3 SV=1
Length = 315
Score = 80.5 bits (197), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 90/194 (46%), Gaps = 19/194 (9%)
Query: 118 LKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQECSVIQDDCNLVLKSL 177
L+ LF+G GG+ G Q G + W+ E +++ A +Y +NF+ +I D N+ ++ +
Sbjct: 2 LQIASLFAGVGGIDLGFEQTGYFETVWANEYDKNAAITYQSNFKNKLIIDDIRNIKVEDV 61
Query: 178 LKGHTQHKGVSLPQKHEVDLIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLSFCDLFQ 237
+ D++++G PC FS + E K L F L +
Sbjct: 62 ---------------PDFDVLLSGFPCTSFSVAGYRKGFEDEK-SGDLFFETLRLIVAKK 105
Query: 238 PKYIILENVTGLVHFNKNEILQCIFHCLLKMNYQVTFDVLQSGNYG-VAQSRNRVVILAS 296
P+ I LENV LV + + I+ L Y + + VL + ++G + Q+R R+ I+
Sbjct: 106 PQVIFLENVKNLVGHDNGNTFKVIYEALESNGYHIKYQVLNAKDFGNIPQNRERIYIVGF 165
Query: 297 K--PGYKLPSFPQP 308
+ YK +FP P
Sbjct: 166 RNIEHYKNFNFPMP 179
>sp|P06530|MTBR_BACIU Modification methylase BsuRI OS=Bacillus subtilis GN=hsdRM PE=3
SV=1
Length = 436
Score = 79.7 bits (195), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 71/243 (29%), Positives = 104/243 (42%), Gaps = 36/243 (14%)
Query: 118 LKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQEC-------SVIQDD- 169
+ L LFSGCGGL G AG+A E EA F E ++ +D
Sbjct: 59 INVLSLFSGCGGLDLGFELAGLAAVIG--EQAAMEAFKDKDRFNELRNKSIFHTIYTNDL 116
Query: 170 ---CNLVLKSLLKGHT-QHKGVSLPQKH--EVDLIVAGPPCQGFSQLNRARELEKSKLKN 223
N K+ GH QH+ K+ + +LI+ G PC GFS+ R ++ + N
Sbjct: 117 FKEANQTYKTNFPGHVIQHEKDIRQVKYFPKCNLILGGFPCPGFSEAG-PRLIDDDR--N 173
Query: 224 GLVFTFLSFCDLFQPKYIILENVTGLVHFNKNEILQCIFHCLLKMNYQVTFDVLQSGNYG 283
L F+ QP+ + ENV G++ K E+L I Y+V F +L + +YG
Sbjct: 174 FLYLHFIRSLIQAQPEIFVAENVKGMMTLGKGEVLNQIIEDFASAGYRVQFKLLNARDYG 233
Query: 284 VAQSRNRVVILASKPGYKLP-SFPQPLHAFSNQLFTINGNLVANKTSHAPYRSITVRDAI 342
V Q R RV+I + +P P H +T P++ T+RD+I
Sbjct: 234 VPQLRERVIIEGVRKDISFNYKYPSPTH--------------GEETGLKPFK--TLRDSI 277
Query: 343 SDL 345
DL
Sbjct: 278 GDL 280
Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 32/60 (53%), Gaps = 10/60 (16%)
Query: 547 EQDRVLTVREYARAQGFPDSYVFRGG----------ICDMYKQIGNAVPPPLAKAIGYEI 596
E R L+V+E AR Q FPD + F G + YKQIGNAVP LAKA+ I
Sbjct: 343 ENHRRLSVKEIARVQTFPDWFQFSQGTNSQTSINNRLDKQYKQIGNAVPVLLAKAVASPI 402
>sp|P34877|MTSA_LACLC Modification methylase ScrFIA OS=Lactococcus lactis subsp. cremoris
GN=scrFIAM PE=3 SV=1
Length = 389
Score = 77.8 bits (190), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 59/226 (26%), Positives = 97/226 (42%), Gaps = 32/226 (14%)
Query: 92 LELAYILKIIHSKEFLPKFPMPLDTPLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERS 151
LE++ IL+ E P F K +DLF+G GG G Q K +S E+++
Sbjct: 57 LEISAILRF---PEIAP-FENRKTAKYKMIDLFAGIGGTRLGFHQTEKVKSVFSSEIDKF 112
Query: 152 EAASYDANFQECSVIQDDCNLVLKSLLKGHTQHKGVSLPQKHEV---DLIVAGPPCQGFS 208
+Y ANF G H ++ + ++ D++V G PCQ FS
Sbjct: 113 AIKTYKANF-------------------GDEPHGDITKIDEKDIPDHDILVGGFPCQAFS 153
Query: 209 QLNRARELEKSKLKNGLVFTFLSFCDLFQPKYIILENVTGLVHFNKNEILQCIFHCLLKM 268
Q ++L + L F +PK +LENV L +K + I + L ++
Sbjct: 154 QA--GKKLGFDDTRGTLFFEIARIIKEKRPKAFLLENVKNLKTHDKGRTFKTILNTLEEL 211
Query: 269 NYQVTFDVLQSGNYGVAQSRNRVVILA----SKPGYKLPSFPQPLH 310
+Y+V + ++ ++G+ Q+R R+ I+ S Y P PL
Sbjct: 212 DYEVHTALFKARDFGLPQNRERIYIVGFDRKSISNYSDFQMPTPLQ 257
Score = 40.8 bits (94), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 30/51 (58%)
Query: 550 RVLTVREYARAQGFPDSYVFRGGICDMYKQIGNAVPPPLAKAIGYEIIKCI 600
R +T RE AR QGFP++++ YK+ GN+V P AI ++++ +
Sbjct: 334 RKITPREAARLQGFPENFIIPVSDTQAYKEFGNSVAVPTIHAIAEKMLEVL 384
>sp|P45000|MTH5_HAEIN Modification methylase HindV OS=Haemophilus influenzae (strain ATCC
51907 / DSM 11121 / KW20 / Rd) GN=hindVM PE=3 SV=1
Length = 304
Score = 77.4 bits (189), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 94/195 (48%), Gaps = 21/195 (10%)
Query: 118 LKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQECSVIQDDCNLVLKSL 177
+KC+DLFSGCGGL G AG + C + E Y NF N+ L++
Sbjct: 1 MKCVDLFSGCGGLSLGFELAGF-EICAAFENWEKAIEIYKNNFS-----HPIYNIDLRN- 53
Query: 178 LKGHTQHKGVSLPQKHEVDLIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLSFCDLFQ 237
+ + V +K+ DLI+ GPPCQ FS A + + S + L ++F + +
Sbjct: 54 -----EKEAVEKIKKYSPDLIMGGPPCQDFSS---AGKRDISLGRADLTYSFANIVCNIR 105
Query: 238 PKYIILENVTGLVHFNKNEILQCIFHCLLKMNYQVTFDVLQSGNYGVAQSRNRVVILA-- 295
PK+ ++ENV K+ ILQ I + + Y +T +L + GV QSR R ++
Sbjct: 106 PKWFVMENVE---QIKKSHILQDIINQFIDFGYGLTSAILDASYCGVPQSRTRFSLIGKL 162
Query: 296 -SKPGYKLPSFPQPL 309
S+ + +P+ + L
Sbjct: 163 NSEHNFLIPTLSRKL 177
Score = 43.9 bits (102), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 45/95 (47%), Gaps = 10/95 (10%)
Query: 510 RNNNWQGVLGRLAWDESFDTIVTTPNPLNKQGKI-------LHPEQDRVLTVREYARAQG 562
RN N +G+ + DE TI P+ K I + + R LT E + Q
Sbjct: 202 RNYNRRGIF---SIDEPSPTIRGVNRPIPKGYNINSCDPKGVELAKVRPLTTIERSYIQT 258
Query: 563 FPDSYVFRGGICDMYKQIGNAVPPPLAKAIGYEII 597
FP S++F G D+ + IGNAVP LAK + II
Sbjct: 259 FPKSFLFSGTKTDLEQMIGNAVPVNLAKFVASAII 293
>sp|P34906|MTF1_FUSNU Modification methylase FnuDI OS=Fusobacterium nucleatum GN=fnuDIM
PE=3 SV=1
Length = 344
Score = 77.4 bits (189), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 89/191 (46%), Gaps = 18/191 (9%)
Query: 118 LKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQECSVIQDDCNLVLKSL 177
+K L LFSG GGL G +AG + + E +++ +Y+ N + +I+ D +L
Sbjct: 1 MKLLSLFSGAGGLDLGFERAGF-EIIVANEYDKTIWETYEKN-HKAKLIKKDIREILSE- 57
Query: 178 LKGHTQHKGVSLPQKHEVDLIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLSFCDLFQ 237
LP+ D I+ GPPCQ +S+ R + + K L + ++ Q
Sbjct: 58 ----------ELPKS---DGIIGGPPCQSWSEAGSLRGINDPRGK--LFYEYIRILKDIQ 102
Query: 238 PKYIILENVTGLVHFNKNEILQCIFHCLLKMNYQVTFDVLQSGNYGVAQSRNRVVILASK 297
PK+ + ENV G++ E ++ I + Y V +L + +YGVAQ R RV + +
Sbjct: 103 PKFFLAENVKGMLSKRNTEAVKDIIKEFEEAGYNVFIKLLNAFDYGVAQDRERVFYVGFR 162
Query: 298 PGYKLPSFPQP 308
+ +F P
Sbjct: 163 KDLNISNFEFP 173
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 550 RVLTVREYARAQGFPDSYVF-RGGICDMYKQIGNAVPPPLAKAIGYEI 596
R L++RE AR QGFPD++ F + D YK +GNAVP LA I I
Sbjct: 276 RRLSIRECARIQGFPDTFKFYYTSLEDGYKMVGNAVPVDLAYIIAKRI 323
>sp|Q59603|MTB1_NEIGO Modification methylase NgoBI OS=Neisseria gonorrhoeae GN=ngoBIM
PE=3 SV=2
Length = 317
Score = 76.3 bits (186), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 88/197 (44%), Gaps = 26/197 (13%)
Query: 119 KCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQECSVIQDDCNLVLKSLL 178
K +DLFSG GG+ G + G +S E ++ Y+ANF E D N + S +
Sbjct: 3 KTIDLFSGIGGIRLGFEKYGCTN-VFSSEWDKYARQVYEANFGEKPF--GDINGIDPSDI 59
Query: 179 KGHTQHKGVSLPQKHEVDLIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLSFCDLFQP 238
H D+++AG PCQ FS + E ++ L F QP
Sbjct: 60 PDH--------------DILLAGFPCQPFSIAGKGLGFEDTR--GTLFFNIAEILKTKQP 103
Query: 239 KYIILENVTGLVHFNKNEILQCIFHCLLKMNYQVTFDVLQSGNYGVAQSRNRVVILA--- 295
K +LENV L + + + L ++ Y V F VL + ++G+ Q R R+ I+
Sbjct: 104 KAFLLENVKRLTTHDSGRTFRIVLETLKQLGYTVYFKVLNTLDFGLPQKRERIYIVGFSD 163
Query: 296 SKPGYKLPSFPQPLHAF 312
+ P Y FP+P++ +
Sbjct: 164 NIPFY----FPEPINQY 176
>sp|P19888|MTBA_BACAR Modification methylase BanI OS=Bacillus aneurinolyticus GN=banIM
PE=1 SV=1
Length = 428
Score = 73.9 bits (180), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 61/195 (31%), Positives = 91/195 (46%), Gaps = 28/195 (14%)
Query: 118 LKCLDLFSGCGGLMEGLCQAG----VAKPC-WSVELERSEAASYDANFQECSVIQDDCNL 172
+K +DLF+G GG+ G +A + C S E+++ +Y NF+E Q D
Sbjct: 3 IKFVDLFAGIGGIRIGFERAAKRFELETECVLSSEIDKKACETYALNFKEEP--QGDI-- 58
Query: 173 VLKSLLKGHTQHKGVSLPQKHEVDLIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLSF 232
H+ S P E D ++AG PCQ FS + + ++ L F
Sbjct: 59 -----------HEITSFP---EFDFLLAGFPCQPFSYAGKQQGFGDTR--GTLFFEVERV 102
Query: 233 CDLFQPKYIILENVTGLVHFNKNEILQCIFHCLLKMNYQVTFDVLQSGNYGVAQSRNRVV 292
+PK +LENV GLV +K L+ I L ++ Y V++ +L S +GV Q+R R+
Sbjct: 103 LRDNRPKAFLLENVRGLVTHDKGRTLKTIISKLEELGYGVSYLLLNSSTFGVPQNRVRIY 162
Query: 293 ---ILASKPGYKLPS 304
IL SKP L S
Sbjct: 163 ILGILGSKPKLTLTS 177
Score = 38.5 bits (88), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 529 TIVTTPNPLNKQGKILHPEQDRVLTVREYARAQGFPDSYVFRGGICDMYKQIGNAVPPPL 588
+I T + +K G ++ R +T RE AR QGFPD ++ YKQ+GN+V +
Sbjct: 344 SITLTSSDAHKLG-VVQNNVPRRITPRECARLQGFPDDFILHSNDNFAYKQLGNSVTVKV 402
Query: 589 AKAI 592
+ +
Sbjct: 403 VEKV 406
>sp|P09915|MTBR_BPRH1 Modification methylase Rho11sI OS=Bacillus phage rho11s PE=3 SV=2
Length = 503
Score = 73.2 bits (178), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 82/183 (44%), Gaps = 16/183 (8%)
Query: 116 TPLKCLDLFSGCGGLMEGLCQAGVAKPCWSV-ELERSEAASYDANFQECSVIQDDCNLVL 174
+ L+ + LFSG G L GV E+++ SY C++ D L
Sbjct: 2 SKLRVMSLFSGIGAFEAALRNIGVEYELVGFSEIDKYAIKSY------CAIHNADEQLNF 55
Query: 175 KSLLKGHTQHKGVSLPQKHEVDLIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLSFCD 234
+ K + LP E DL+V G PCQ FS + E ++ L F ++
Sbjct: 56 GDVSKIDKK----KLP---EFDLLVGGSPCQSFSVAGYRKGFEDTR--GTLFFQYIDTLK 106
Query: 235 LFQPKYIILENVTGLVHFNKNEILQCIFHCLLKMNYQVTFDVLQSGNYGVAQSRNRVVIL 294
QP+Y + ENV GL++ +K L + ++ Y++ ++L S + V Q+R R+ I+
Sbjct: 107 EKQPRYFVFENVKGLINHDKGNTLNIMAESFSEVGYRIDLELLNSKFFNVPQNRERIYII 166
Query: 295 ASK 297
+
Sbjct: 167 GVR 169
>sp|P25263|MTC1_HERAU Modification methylase HgiCI OS=Herpetosiphon aurantiacus GN=hgiCIM
PE=3 SV=2
Length = 420
Score = 73.2 bits (178), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 83/183 (45%), Gaps = 26/183 (14%)
Query: 118 LKCLDLFSGCGGLMEGLCQA----GVAKPC-WSVELERSEAASYDANFQECSVIQDDCNL 172
LK +DLF+G GG+ G QA G+ C S E+++ +Y NF E S Q D
Sbjct: 2 LKFIDLFAGIGGMRLGFEQAMHELGIETACVLSSEIDKHAQTTYAMNFHEQS--QGDITQ 59
Query: 173 VLKSLLKGHTQHKGVSLPQKHEVDLIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLSF 232
+ P D ++AG PCQ FS + + ++ L F
Sbjct: 60 I-------------QDFP---SFDFLLAGFPCQPFSYAGKQKGFGDTR--GTLFFEIERI 101
Query: 233 CDLFQPKYIILENVTGLVHFNKNEILQCIFHCLLKMNYQVTFDVLQSGNYGVAQSRNRVV 292
++PK +LENV GL +K + I L ++NY V + +L S N+ V Q+R RV
Sbjct: 102 LKAYRPKGFLLENVRGLTTHDKGRTFKTILQKLHELNYGV-YLILNSSNFQVPQNRLRVY 160
Query: 293 ILA 295
I+
Sbjct: 161 IVG 163
Score = 48.5 bits (114), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 34/56 (60%)
Query: 543 ILHPEQDRVLTVREYARAQGFPDSYVFRGGICDMYKQIGNAVPPPLAKAIGYEIIK 598
++H + R +T RE AR QGFPDS+ F Y+Q GN+V P+ KA+ ++ K
Sbjct: 357 VVHQNRIRRITPRECARLQGFPDSFQFHPKDSLAYRQFGNSVSVPVVKAVILDLFK 412
>sp|P25266|MTE1_HERAU Modification methylase HgiEI OS=Herpetosiphon aurantiacus GN=hgiEIM
PE=3 SV=1
Length = 437
Score = 71.6 bits (174), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 83/318 (26%), Positives = 132/318 (41%), Gaps = 42/318 (13%)
Query: 118 LKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQECSVIQDDCNLVLKSL 177
+ +DLF+G GG GL G S E+++ Y N+ V + ++
Sbjct: 4 FRFIDLFAGIGGFRLGLEAVG-GVCVASAEIDQQAIKVYWQNWPTDGVDHNLGDITQIQQ 62
Query: 178 LKGHTQHKGVSLPQKHEVDLIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLSFCDLFQ 237
L H D++V G PCQ +S + + + + + L + + Q
Sbjct: 63 LPAH--------------DVLVGGVPCQPWSIAGKNQAFDDPRGQ--LWADVIRLVQINQ 106
Query: 238 PKYIILENVTGLVHFNKNEILQCIFHCLLKMNYQVTFDVLQSGNYGVAQSRNRVVILASK 297
PK I ENV GLV L+ I + Y V + +L S ++GVAQ+R+RV I+ +
Sbjct: 107 PKAFIFENVKGLVDPRNRLCLEIILDSFKDLGYSVFYKLLNSFDFGVAQNRDRVFIVGIQ 166
Query: 298 PGYKLPSFPQPLHAFSNQ-LFTINGNLVANKTSHAPYRSITVRDAISDLPRVSQGANCYL 356
L F P +A S+Q L+ I NL A +T SI ++ + R+ G N
Sbjct: 167 QKLDLNGFSFPEYAESDQRLYHILDNLEAPETK---LESIPIQRNLFG-ERIEVGYNKL- 221
Query: 357 FHNPPKTHFQRM-----MKDG-SRIHDIHINLRELLQDHICKILSPLMEMRIRLIPSFPN 410
P+ F +++G + IH I + HIC I+ MR R + N
Sbjct: 222 ---TPRGAFNDFFILNDIRNGPTSIHSWEIYPTTEREKHICMII-----MRNRRNSRYGN 273
Query: 411 AD-----WRDLPNICVKL 423
D + D+ + V L
Sbjct: 274 CDGNPMSYSDIAELVVDL 291
Score = 46.2 bits (108), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Query: 542 KILHPEQDRVLTVREYARAQGFPDSYVFRGGICDMYKQIGNAVPPPLAKAIGYEIIKCI 600
++L P++ R +TV E AR QGFP ++ F ++ IGN+V PP+ A+G ++C+
Sbjct: 370 QVLIPKRYRPITVSEAARLQGFPSTFKFHSNQSANFRLIGNSVAPPVIVALGKR-LQCV 427
>sp|P25264|MTC2_HERAU Modification methylase HgiCII OS=Herpetosiphon aurantiacus
GN=hgiCIIM PE=3 SV=1
Length = 437
Score = 70.9 bits (172), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/207 (27%), Positives = 89/207 (42%), Gaps = 18/207 (8%)
Query: 118 LKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQECSVIQDDCNLVLKSL 177
+ +DLF+G GG GL G S E+++ Y N+ + ++
Sbjct: 4 FRFIDLFAGIGGFRLGLEAVG-GICVGSAEIDQQAIKVYRQNWPTDRSEHNLGDITTLQQ 62
Query: 178 LKGHTQHKGVSLPQKHEVDLIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLSFCDLFQ 237
L H DL+V G PCQ +S + + + + + L + + Q
Sbjct: 63 LPAH--------------DLVVGGVPCQPWSIAGKNQAFDDPRGQ--LWADVIRLVRINQ 106
Query: 238 PKYIILENVTGLVHFNKNEILQCIFHCLLKMNYQVTFDVLQSGNYGVAQSRNRVVILASK 297
PK I ENV GL+ L+ I Y V + +L S +YGVAQ+R+RV I+ +
Sbjct: 107 PKAFIFENVKGLIDPRNRLCLESILDSFKAEGYNVYYKLLNSFDYGVAQNRDRVFIIGIQ 166
Query: 298 PGYKLPSFPQPLHAFSNQ-LFTINGNL 323
+P F P ++ S Q L+ I NL
Sbjct: 167 QKLGVPDFSFPEYSESEQRLYDILDNL 193
Score = 47.0 bits (110), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 33/52 (63%)
Query: 542 KILHPEQDRVLTVREYARAQGFPDSYVFRGGICDMYKQIGNAVPPPLAKAIG 593
+IL P++ R +TV E AR QGFP ++ F ++ IGN+V PP+ A+G
Sbjct: 370 QILIPKRHRPITVNEAARIQGFPATFKFHSNQSANFRLIGNSVAPPVIMALG 421
>sp|P24581|MTNX_NEILA Cytosine-specific methyltransferase NlaX OS=Neisseria lactamica
GN=nlaXM PE=3 SV=1
Length = 313
Score = 70.9 bits (172), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 60/217 (27%), Positives = 97/217 (44%), Gaps = 28/217 (12%)
Query: 118 LKCLDLFSGCGGLMEGLCQAGVAKPC-WSVELERSEAASYDANFQECSVIQDDCNLVLKS 176
K +DLF+G GG+ G QA C +S E+++ +Y AN +V D
Sbjct: 2 FKIIDLFAGIGGIRLGFEQAFDDVRCVFSSEIDKYAVQTYQANHGGETVCGD-------- 53
Query: 177 LLKGHTQHKGVSLPQKHEVDLIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLSFCDLF 236
TQ +P + D++ AG PCQ FSQ + ++ L F
Sbjct: 54 ----ITQTDVADIP---DHDILSAGFPCQPFSQAGLKKGFADTR--GTLFFDIERILLAK 104
Query: 237 QPKYIILENVTGLVHFNKNEILQCIFHCLLKMNYQVTFDVLQSGNYGVAQSRNRVVILAS 296
+P+ +LENV L +K LQ I L + Y+V +VL++ ++G+ Q+R R+ ++
Sbjct: 105 KPQAFLLENVKQLKGHDKGRTLQVILAHLQQAGYKVYTEVLKARDFGIPQNRERIYLVGF 164
Query: 297 KPGYKLPSFPQP----------LHAFSNQLFTINGNL 323
FPQP L A+ ++ +TI+ L
Sbjct: 165 LNHDVDFRFPQPIGQATAVGDILEAYPDEKYTISDKL 201
Score = 36.6 bits (83), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 550 RVLTVREYARAQGFPDSYVFRGGICDMYKQIGNAVPPPLAKAIGYEIIKCIGNAV 604
R +T E AR QGFPDS+ Y+Q GN+V P+ +AI E +K +AV
Sbjct: 255 RKITPPEAARLQGFPDSFQIPVSDAQAYRQFGNSVCVPVIRAIA-EQMKAALSAV 308
>sp|P34879|MTS2_SHISO Modification methylase SsoII OS=Shigella sonnei GN=ssoIIM PE=3 SV=1
Length = 379
Score = 70.5 bits (171), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 48/206 (23%), Positives = 87/206 (42%), Gaps = 22/206 (10%)
Query: 108 PKFPMPLDTPLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQECSVIQ 167
P +P + + +DLF+G GG G Q +S E ++ +Y AN+ +
Sbjct: 62 PPYPNNENGRYRMIDLFAGIGGTRLGFHQTNAVNVVFSSEWDKFAQKTYHANYGDFP--D 119
Query: 168 DDCNLVLKSLLKGHTQHKGVSLPQKHEVDLIVAGPPCQGFSQLNRARELEKSKLKNGLVF 227
D + + + H +++V G PC FSQ + ++ L F
Sbjct: 120 GDITKIDEKDIPDH--------------EILVGGFPCVAFSQAGLKKGFNDTR--GTLFF 163
Query: 228 TFLSFCDLFQPKYIILENVTGLVHFNKNEILQCIFHCLLKMNYQVTFDVLQSGNYGVAQS 287
+P +LENV L+ +K I + L ++NY V +++ + ++GV Q+
Sbjct: 164 DIARIIKEKKPHAFLLENVKNLLGHDKGRTFSIIKNTLEELNYTVYYNIFAAKDFGVPQN 223
Query: 288 RNRVVILASKP----GYKLPSFPQPL 309
R R+ I+ ++ +FP PL
Sbjct: 224 RERIYIVGFNKEKVRNHEHFTFPTPL 249
Score = 42.0 bits (97), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 28/51 (54%)
Query: 550 RVLTVREYARAQGFPDSYVFRGGICDMYKQIGNAVPPPLAKAIGYEIIKCI 600
R +T RE +R QGFP ++ YKQ GN+V P+ AI +II +
Sbjct: 327 RKITPREASRLQGFPSDFIIPVSDTQAYKQFGNSVAVPVINAIAEKIISTL 377
>sp|P00476|MTBS_BPSPR Modification methylase SPRI OS=Bacillus phage SPR PE=3 SV=1
Length = 439
Score = 70.1 bits (170), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 80/179 (44%), Gaps = 16/179 (8%)
Query: 118 LKCLDLFSGCGGLMEGLCQAGVAKPCWSV-ELERSEAASYDANFQECSVIQDDCNLVLKS 176
L+ + LFSG G L GV E+++ S+ C++ D L
Sbjct: 4 LRVMSLFSGIGAFEAALRNIGVGYELVGFSEIDKYAVKSF------CAIHNVDEQLNFGD 57
Query: 177 LLKGHTQHKGVSLPQKHEVDLIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLSFCDLF 236
+ K + LP E DL+V G PCQ FS + E ++ L F ++
Sbjct: 58 VSKIDKKK----LP---EFDLLVGGSPCQSFSVAGHRKGFEDTR--GTLFFQYVETLKEK 108
Query: 237 QPKYIILENVTGLVHFNKNEILQCIFHCLLKMNYQVTFDVLQSGNYGVAQSRNRVVILA 295
QPK+ + ENV GL++ +K L + ++ Y++ ++L S + V Q+R R+ I+
Sbjct: 109 QPKFFVFENVKGLINHDKGNTLNVMAEAFSEVGYRIDLELLNSKFFNVPQNRERLYIIG 167
>sp|P15446|MTH2_HAEPA Modification methylase HpaII OS=Haemophilus parainfluenzae
GN=hpaIIM PE=1 SV=1
Length = 358
Score = 68.6 bits (166), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/208 (28%), Positives = 91/208 (43%), Gaps = 21/208 (10%)
Query: 106 FLPKFPMPLDTPLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQECSV 165
F P+ L +DLF+G GG + G K +S E + +Y+ANF +
Sbjct: 20 FEPESNPNLREKFTFIDLFAGIGGFRIAMQNLG-GKCIFSSEWDEQAQKTYEANFGDLPY 78
Query: 166 IQDDCNLVLKSLLKGHTQHKGVSLPQKHEVDLIVAGPPCQGFSQLNRARELEKSKLKNGL 225
D L + +P+K D++ AG PCQ FS + E ++ L
Sbjct: 79 --GDITL----------EETKAFIPEK--FDILCAGFPCQAFSIAGKRGGFEDTR--GTL 122
Query: 226 VFTFLSFCDLFQPKYIILENVTGLVHFNKNEILQCIFHCLLK-MNYQVTF-DVLQSGNYG 283
F QPK LENV GL + +K L+ I + L + + Y V ++ + N+G
Sbjct: 123 FFDVAEIIRRHQPKAFFLENVKGLKNHDKGRTLKTILNVLREDLGYFVPEPAIVNAKNFG 182
Query: 284 VAQSRNRVVILA--SKPGYKLPSFPQPL 309
V Q+R R+ I+ G S+P+PL
Sbjct: 183 VPQNRERIYIVGFHKSTGVNSFSYPEPL 210
Score = 53.5 bits (127), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 35/56 (62%)
Query: 547 EQDRVLTVREYARAQGFPDSYVFRGGICDMYKQIGNAVPPPLAKAIGYEIIKCIGN 602
E R +T RE+AR QGFPDSYV YKQ GN+V P +A G +I++ +GN
Sbjct: 300 EGIRKMTPREWARLQGFPDSYVIPVSDASAYKQFGNSVAVPAIQATGKKILEKLGN 355
>sp|P25262|MTB1_HERAU Modification methylase HgiBI OS=Herpetosiphon aurantiacus GN=hgiBIM
PE=3 SV=1
Length = 437
Score = 68.6 bits (166), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/212 (27%), Positives = 91/212 (42%), Gaps = 18/212 (8%)
Query: 118 LKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQECSVIQDDCNLVLKSL 177
+ +DLF+G GG GL G S E+++ Y N+ V + ++
Sbjct: 4 FRFIDLFAGIGGFRLGLEAVG-GVCVASAEIDQQAIKVYRQNWPTDGVDHNLGDITAIQQ 62
Query: 178 LKGHTQHKGVSLPQKHEVDLIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLSFCDLFQ 237
L H D++V G PCQ +S + + + + + L + + Q
Sbjct: 63 LPAH--------------DVLVGGVPCQPWSIAGKNQAFDDPRGQ--LWADVIRLVQINQ 106
Query: 238 PKYIILENVTGLVHFNKNEILQCIFHCLLKMNYQVTFDVLQSGNYGVAQSRNRVVILASK 297
PK I ENV GLV L+ I + Y V + +L S ++GVAQ+R+RV I+ +
Sbjct: 107 PKAFIFENVKGLVDPRNRLCLEIILDSFKDLGYSVFYKLLNSFDFGVAQNRDRVFIVGIQ 166
Query: 298 PGYKLPSFPQPLHAFSNQ-LFTINGNLVANKT 328
L F P + S Q L+ I NL +T
Sbjct: 167 QKLDLNGFSFPEYTESEQRLYHILDNLEVPET 198
Score = 47.8 bits (112), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Query: 542 KILHPEQDRVLTVREYARAQGFPDSYVFRGGICDMYKQIGNAVPPPLAKAIGYEIIKCI 600
++L P++ R +TV E AR QGFP S+ F ++ IGN+V PP+ A+G + ++C+
Sbjct: 370 QVLIPKRYRKITVSEAARLQGFPGSFQFHSNQSANFRLIGNSVAPPVIVALG-KALQCV 427
>sp|P20589|MTH3_HAEAE Modification methylase HaeIII OS=Haemophilus aegyptius GN=haeIIIM
PE=1 SV=1
Length = 330
Score = 67.8 bits (164), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 82/180 (45%), Gaps = 18/180 (10%)
Query: 118 LKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQECSVIQDDCNLVLKSL 177
+ + LFSG GGL G +AG C + E ++S +Y++N L
Sbjct: 1 MNLISLFSGAGGLDLGFQKAGFRIIC-ANEYDKSIWKTYESNHSA-------------KL 46
Query: 178 LKGHTQHKGVSLPQKHEVDLIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLSFCDLFQ 237
+KG +S + + D I+ GPPCQ +S+ R ++ + K L + ++ +
Sbjct: 47 IKGDISK--ISSDEFPKCDGIIGGPPCQSWSEGGSLRGIDDPRGK--LFYEYIRILKQKK 102
Query: 238 PKYIILENVTGLVHFNKNEILQCIFHCLLKMNYQVTFDVLQSGNYGVAQSRNRVVILASK 297
P + + ENV G++ N+ +Q Y V +L + +YGVAQ R RV + +
Sbjct: 103 PIFFLAENVKGMMAQRHNKAVQEFIQEFDNAGYDVHIILLNANDYGVAQDRKRVFYIGFR 162
Score = 52.4 bits (124), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/56 (55%), Positives = 36/56 (64%), Gaps = 5/56 (8%)
Query: 550 RVLTVREYARAQGFPDSYVFR-GGICDMYKQIGNAVPPPLAKAIGYEIIKCIGNAV 604
R LTVRE AR QGFPD ++F + D YK IGNAVP LA YEI K I +A+
Sbjct: 273 RRLTVRECARVQGFPDDFIFHYESLNDGYKMIGNAVPVNLA----YEIAKTIKSAL 324
>sp|P24600|MTD1_HERAU Modification methylase HgiDI OS=Herpetosiphon aurantiacus GN=hgiDIM
PE=3 SV=1
Length = 309
Score = 67.0 bits (162), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 80/186 (43%), Gaps = 26/186 (13%)
Query: 118 LKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANF----QECSVIQDDCNLV 173
+K +DLF+GCGG+ G QAG + +V+ R +Y NF E + Q D
Sbjct: 1 MKTIDLFAGCGGMSLGFMQAGF-EIVAAVDNWRPAINTYQQNFTHPIHELDLAQIDA--- 56
Query: 174 LKSLLKGHTQHKGVSLPQKHEVDLIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLSFC 233
VSL + H +LI+ GPPCQ FS A + ++ + L F
Sbjct: 57 ------------AVSLIKTHSPELIIGGPPCQDFSS---AGKRDEGLGRANLTLDFAKIV 101
Query: 234 DLFQPKYIILENVTGLVHFNKNEILQCIFHCLLKMNYQVTFDVLQSGNYGVAQSRNRVVI 293
QP ++I+ENV ++I Q L Y + VL + GV Q R R +
Sbjct: 102 LAIQPAWVIMENVE---RARLSKIHQQACSMLGDEGYSLAQVVLDASLCGVPQLRKRTFV 158
Query: 294 LASKPG 299
+ + G
Sbjct: 159 IGHRHG 164
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.136 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 245,636,303
Number of Sequences: 539616
Number of extensions: 10717859
Number of successful extensions: 22612
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 22205
Number of HSP's gapped (non-prelim): 241
length of query: 620
length of database: 191,569,459
effective HSP length: 124
effective length of query: 496
effective length of database: 124,657,075
effective search space: 61829909200
effective search space used: 61829909200
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)