Query psy12304
Match_columns 620
No_of_seqs 322 out of 1805
Neff 7.8
Searched_HMMs 46136
Date Fri Aug 16 15:34:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12304.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12304hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00675 dcm DNA-methyltransf 100.0 3.8E-65 8.3E-70 532.6 23.3 173 120-310 1-175 (315)
2 PF00145 DNA_methylase: C-5 cy 100.0 2.2E-64 4.7E-69 532.4 19.7 196 118-349 1-197 (335)
3 COG0270 Dcm Site-specific DNA 100.0 1.2E-62 2.5E-67 517.0 23.0 322 116-603 2-327 (328)
4 cd00315 Cyt_C5_DNA_methylase C 100.0 6.1E-62 1.3E-66 499.4 22.8 169 118-303 1-169 (275)
5 PRK10458 DNA cytosine methylas 100.0 1.1E-55 2.3E-60 476.9 25.4 184 114-302 85-292 (467)
6 KOG0919|consensus 100.0 3.7E-29 8E-34 238.1 7.1 165 116-298 2-170 (338)
7 cd04708 BAH_plantDCM_II BAH, o 99.9 1.7E-23 3.6E-28 199.4 8.1 125 1-130 64-202 (202)
8 cd04711 BAH_Dnmt1_II BAH, or B 99.8 4.8E-20 1E-24 162.9 6.3 84 1-88 50-136 (137)
9 cd04716 BAH_plantDCM_I BAH, or 99.7 3.2E-17 7E-22 146.0 7.0 84 1-88 36-121 (122)
10 cd04710 BAH_fungalPHD BAH, or 99.6 3.5E-16 7.7E-21 142.0 6.1 71 1-77 57-127 (135)
11 cd04709 BAH_MTA BAH, or Bromo 99.5 6.3E-14 1.4E-18 131.1 6.0 80 1-85 36-137 (164)
12 PF01426 BAH: BAH domain; Int 99.4 9.7E-13 2.1E-17 117.9 6.3 81 1-87 38-118 (119)
13 smart00439 BAH Bromo adjacent 99.3 1.3E-12 2.9E-17 117.1 6.7 83 1-86 36-118 (120)
14 cd04713 BAH_plant_3 BAH, or Br 99.3 1.2E-12 2.5E-17 121.3 6.1 80 1-86 53-135 (146)
15 cd04712 BAH_DCM_I BAH, or Brom 99.3 2.6E-12 5.7E-17 116.3 7.6 76 2-88 50-129 (130)
16 cd04714 BAH_BAHCC1 BAH, or Bro 99.3 9.9E-13 2.1E-17 118.0 4.3 77 1-77 37-113 (121)
17 cd04718 BAH_plant_2 BAH, or Br 99.3 2.4E-12 5.2E-17 116.5 5.8 78 1-85 68-145 (148)
18 cd04760 BAH_Dnmt1_I BAH, or Br 99.3 5.3E-12 1.1E-16 111.9 6.8 71 1-77 37-117 (124)
19 cd04370 BAH BAH, or Bromo Adja 99.3 4.2E-12 9E-17 114.2 5.6 81 1-85 39-120 (123)
20 cd04717 BAH_polybromo BAH, or 99.2 1.3E-11 2.9E-16 111.0 5.2 80 2-85 38-117 (121)
21 cd04721 BAH_plant_1 BAH, or Br 98.9 3.6E-09 7.8E-14 95.9 6.2 72 2-79 40-117 (130)
22 cd04715 BAH_Orc1p_like BAH, or 98.8 2.4E-09 5.2E-14 100.0 4.2 53 1-53 63-122 (159)
23 cd04719 BAH_Orc1p_animal BAH, 98.8 6.4E-09 1.4E-13 93.4 6.4 73 2-77 40-119 (128)
24 cd04720 BAH_Orc1p_Yeast BAH, o 98.8 6.5E-09 1.4E-13 99.5 6.7 78 1-85 86-175 (179)
25 KOG1886|consensus 98.6 9.7E-09 2.1E-13 108.9 2.4 73 1-78 85-160 (464)
26 PRK11783 rlmL 23S rRNA m(2)G24 97.7 0.00049 1.1E-08 80.1 14.1 150 118-295 540-700 (702)
27 PF09445 Methyltransf_15: RNA 97.6 0.00024 5.1E-09 66.9 8.6 79 119-211 2-86 (163)
28 COG2263 Predicted RNA methylas 97.6 8.2E-05 1.8E-09 70.7 5.5 115 119-275 48-166 (198)
29 PF13659 Methyltransf_26: Meth 97.6 0.00019 4.2E-09 63.4 7.7 76 118-207 2-83 (117)
30 TIGR00479 rumA 23S rRNA (uraci 97.5 0.00099 2.1E-08 73.3 13.3 120 118-275 294-418 (431)
31 TIGR02085 meth_trns_rumB 23S r 97.5 0.00086 1.9E-08 72.3 12.6 69 119-203 236-309 (374)
32 PF03602 Cons_hypoth95: Conser 97.5 0.00012 2.7E-09 70.6 5.4 76 116-203 42-123 (183)
33 PRK10909 rsmD 16S rRNA m(2)G96 97.5 0.00055 1.2E-08 67.0 10.0 71 118-203 55-130 (199)
34 TIGR03704 PrmC_rel_meth putati 97.5 0.00068 1.5E-08 68.9 10.1 137 117-276 87-239 (251)
35 TIGR00095 RNA methyltransferas 97.4 0.00032 6.9E-09 68.2 6.9 74 118-203 51-130 (189)
36 COG2520 Predicted methyltransf 97.3 0.0015 3.2E-08 68.6 10.8 123 117-274 189-317 (341)
37 PRK03522 rumB 23S rRNA methylu 97.3 0.0023 5E-08 67.4 11.7 73 118-206 175-252 (315)
38 KOG3420|consensus 97.3 0.00026 5.7E-09 64.0 3.8 72 116-203 48-123 (185)
39 COG0742 N6-adenine-specific me 97.2 0.00084 1.8E-08 64.3 7.2 78 115-205 42-125 (187)
40 PRK15128 23S rRNA m(5)C1962 me 97.1 0.001 2.3E-08 72.0 7.6 75 118-204 222-303 (396)
41 PHA03411 putative methyltransf 97.1 0.0042 9E-08 63.3 11.2 139 118-273 66-210 (279)
42 PHA03412 putative methyltransf 97.0 0.0013 2.8E-08 65.5 6.0 71 117-204 50-124 (241)
43 TIGR00537 hemK_rel_arch HemK-r 97.0 0.0061 1.3E-07 58.5 10.5 137 118-285 21-169 (179)
44 COG2265 TrmA SAM-dependent met 96.9 0.0074 1.6E-07 65.9 11.8 117 116-273 293-416 (432)
45 PF02475 Met_10: Met-10+ like- 96.9 0.00098 2.1E-08 65.2 4.3 69 118-203 103-178 (200)
46 PRK05031 tRNA (uracil-5-)-meth 96.9 0.011 2.4E-07 63.4 12.5 82 119-203 209-297 (362)
47 TIGR00446 nop2p NOL1/NOP2/sun 96.8 0.0074 1.6E-07 61.9 9.9 80 118-212 73-158 (264)
48 PRK10901 16S rRNA methyltransf 96.6 0.0084 1.8E-07 65.9 9.3 82 117-211 245-330 (427)
49 PRK14967 putative methyltransf 96.5 0.025 5.4E-07 56.4 11.6 135 118-275 38-182 (223)
50 TIGR00308 TRM1 tRNA(guanine-26 96.5 0.0061 1.3E-07 65.5 7.0 72 117-203 45-123 (374)
51 PRK14904 16S rRNA methyltransf 96.5 0.012 2.7E-07 64.9 9.7 130 118-263 252-394 (445)
52 PRK14902 16S rRNA methyltransf 96.4 0.011 2.5E-07 65.2 9.2 80 118-211 252-337 (444)
53 PF05175 MTS: Methyltransferas 96.4 0.0043 9.2E-08 59.2 5.0 71 117-203 32-107 (170)
54 COG1092 Predicted SAM-dependen 96.3 0.044 9.6E-07 58.9 12.4 131 119-274 220-363 (393)
55 PRK14901 16S rRNA methyltransf 96.3 0.018 4E-07 63.3 9.8 83 118-212 254-343 (434)
56 TIGR03533 L3_gln_methyl protei 96.3 0.012 2.7E-07 60.9 7.8 76 118-209 123-204 (284)
57 smart00650 rADc Ribosomal RNA 96.2 0.0093 2E-07 56.7 5.8 69 118-203 15-86 (169)
58 PRK13168 rumA 23S rRNA m(5)U19 96.1 0.0091 2E-07 65.9 6.4 76 118-206 299-379 (443)
59 TIGR03534 RF_mod_PrmC protein- 96.1 0.03 6.4E-07 56.5 9.7 78 117-210 88-170 (251)
60 PRK04338 N(2),N(2)-dimethylgua 96.1 0.011 2.4E-07 63.8 6.7 70 118-203 59-134 (382)
61 PRK09328 N5-glutamine S-adenos 96.1 0.066 1.4E-06 54.9 12.2 78 116-209 108-190 (275)
62 cd02440 AdoMet_MTases S-adenos 96.1 0.028 6.2E-07 46.9 7.9 74 119-207 1-79 (107)
63 PRK00121 trmB tRNA (guanine-N( 96.1 0.057 1.2E-06 53.0 11.0 130 117-273 41-177 (202)
64 PRK11805 N5-glutamine S-adenos 96.0 0.017 3.7E-07 60.5 7.6 76 118-209 135-216 (307)
65 TIGR02143 trmA_only tRNA (urac 96.0 0.062 1.4E-06 57.5 11.8 82 119-203 200-288 (353)
66 KOG3554|consensus 96.0 0.0027 5.8E-08 67.0 1.2 56 23-83 104-159 (693)
67 PF13847 Methyltransf_31: Meth 95.8 0.018 3.9E-07 53.6 6.0 75 116-204 3-83 (152)
68 PRK00377 cbiT cobalt-precorrin 95.8 0.17 3.7E-06 49.4 12.9 119 117-275 41-168 (198)
69 TIGR01177 conserved hypothetic 95.7 0.024 5.2E-07 60.1 7.0 75 117-209 183-263 (329)
70 PRK14903 16S rRNA methyltransf 95.7 0.056 1.2E-06 59.4 10.0 131 118-262 239-382 (431)
71 COG2890 HemK Methylase of poly 95.6 0.014 2.9E-07 60.4 4.8 78 119-208 113-190 (280)
72 PRK03612 spermidine synthase; 95.5 0.26 5.6E-06 55.6 14.9 148 117-297 298-459 (521)
73 PRK14968 putative methyltransf 95.5 0.084 1.8E-06 50.5 9.4 71 118-206 25-102 (188)
74 PRK01581 speE spermidine synth 95.4 0.59 1.3E-05 49.8 15.9 151 117-300 151-316 (374)
75 COG4123 Predicted O-methyltran 95.4 0.03 6.4E-07 56.3 6.0 160 117-299 45-214 (248)
76 TIGR00563 rsmB ribosomal RNA s 95.4 0.059 1.3E-06 59.3 9.0 87 118-212 240-327 (426)
77 PF10672 Methyltrans_SAM: S-ad 95.3 0.028 6E-07 58.0 5.8 76 118-208 125-207 (286)
78 PF05958 tRNA_U5-meth_tr: tRNA 95.2 0.013 2.7E-07 62.8 3.1 83 119-203 199-287 (352)
79 PF01170 UPF0020: Putative RNA 95.2 0.036 7.9E-07 53.3 5.7 101 118-242 30-147 (179)
80 TIGR00536 hemK_fam HemK family 95.1 0.059 1.3E-06 55.8 7.4 76 118-209 116-197 (284)
81 PF12847 Methyltransf_18: Meth 95.0 0.057 1.2E-06 47.0 6.0 68 118-202 3-78 (112)
82 KOG1827|consensus 95.0 0.018 4E-07 64.4 3.4 79 2-86 225-305 (629)
83 KOG2730|consensus 94.9 0.058 1.2E-06 52.7 6.1 80 119-211 97-182 (263)
84 PRK08287 cobalt-precorrin-6Y C 94.8 0.37 8E-06 46.4 11.8 43 118-160 33-75 (187)
85 PRK14966 unknown domain/N5-glu 94.7 0.041 8.8E-07 59.5 5.2 72 119-204 254-329 (423)
86 TIGR00417 speE spermidine synt 94.2 1.6 3.4E-05 44.8 15.5 147 119-297 75-232 (270)
87 PRK14896 ksgA 16S ribosomal RN 94.1 0.071 1.5E-06 54.4 5.2 67 118-203 31-100 (258)
88 PRK00274 ksgA 16S ribosomal RN 94.0 0.07 1.5E-06 54.9 4.9 69 118-203 44-114 (272)
89 PRK00517 prmA ribosomal protei 93.6 0.52 1.1E-05 47.8 10.4 115 117-275 120-236 (250)
90 TIGR00755 ksgA dimethyladenosi 93.5 0.1 2.2E-06 53.1 5.1 53 117-171 30-85 (253)
91 PLN02585 magnesium protoporphy 93.4 0.73 1.6E-05 48.5 11.3 43 117-161 145-187 (315)
92 KOG1227|consensus 93.4 0.037 8E-07 56.3 1.5 42 118-160 196-238 (351)
93 PRK09489 rsmC 16S ribosomal RN 93.4 0.14 3E-06 54.5 6.0 68 119-203 199-270 (342)
94 PTZ00338 dimethyladenosine tra 93.2 0.15 3.3E-06 53.0 5.9 67 118-203 38-110 (294)
95 PRK10742 putative methyltransf 93.1 0.25 5.4E-06 49.7 6.9 73 116-204 88-174 (250)
96 PRK15001 SAM-dependent 23S rib 93.1 0.12 2.6E-06 55.7 4.9 43 118-160 230-272 (378)
97 PRK00811 spermidine synthase; 93.1 1.5 3.3E-05 45.4 13.0 146 117-297 77-237 (283)
98 PRK11933 yebU rRNA (cytosine-C 92.7 0.57 1.2E-05 52.0 9.7 134 117-264 114-260 (470)
99 TIGR00091 tRNA (guanine-N(7)-) 92.6 1.9 4E-05 41.9 12.2 126 118-269 18-149 (194)
100 KOG2904|consensus 92.5 0.27 5.8E-06 49.7 6.1 83 117-204 149-232 (328)
101 TIGR00080 pimt protein-L-isoas 92.4 0.26 5.5E-06 48.8 6.0 73 117-204 78-156 (215)
102 PRK01544 bifunctional N5-gluta 92.4 0.28 6E-06 55.2 6.9 147 117-295 139-305 (506)
103 PLN02823 spermine synthase 91.8 5.8 0.00012 42.1 15.6 150 118-297 105-267 (336)
104 TIGR03587 Pse_Me-ase pseudamin 91.8 0.41 8.8E-06 47.1 6.5 52 118-170 45-97 (204)
105 PRK07402 precorrin-6B methylas 91.5 0.27 5.9E-06 47.8 4.9 55 118-172 42-101 (196)
106 TIGR00138 gidB 16S rRNA methyl 91.4 0.38 8.2E-06 46.4 5.7 69 117-201 43-116 (181)
107 PRK01683 trans-aconitate 2-met 91.4 0.49 1.1E-05 48.0 6.8 73 117-205 32-104 (258)
108 PLN02672 methionine S-methyltr 91.4 0.28 6E-06 59.4 5.6 43 118-160 120-162 (1082)
109 COG2227 UbiG 2-polyprenyl-3-me 91.3 0.62 1.4E-05 46.4 7.1 48 115-164 58-105 (243)
110 PLN02396 hexaprenyldihydroxybe 91.3 0.47 1E-05 50.0 6.7 43 116-160 131-173 (322)
111 COG2242 CobL Precorrin-6B meth 91.2 5.2 0.00011 38.5 12.9 124 119-283 37-168 (187)
112 PRK10258 biotin biosynthesis p 91.1 0.4 8.6E-06 48.5 5.9 69 117-202 43-111 (251)
113 PRK04266 fibrillarin; Provisio 90.9 5.7 0.00012 39.7 13.8 144 118-296 74-224 (226)
114 TIGR02021 BchM-ChlM magnesium 90.5 0.46 9.9E-06 47.0 5.5 43 117-161 56-98 (219)
115 PF13649 Methyltransf_25: Meth 90.5 0.47 1E-05 40.6 4.9 66 120-200 1-73 (101)
116 TIGR02987 met_A_Alw26 type II 90.4 0.27 5.7E-06 55.6 4.2 83 116-208 31-126 (524)
117 COG2264 PrmA Ribosomal protein 90.2 0.41 8.9E-06 49.6 4.9 125 116-275 162-286 (300)
118 PRK11036 putative S-adenosyl-L 90.2 0.79 1.7E-05 46.6 7.1 70 116-201 44-119 (255)
119 PF06325 PrmA: Ribosomal prote 90.0 0.37 8.1E-06 50.1 4.5 120 118-276 163-282 (295)
120 TIGR02752 MenG_heptapren 2-hep 89.8 0.67 1.5E-05 46.1 6.1 72 118-204 47-124 (231)
121 PRK11207 tellurite resistance 89.7 0.56 1.2E-05 45.7 5.3 42 117-160 31-72 (197)
122 COG0144 Sun tRNA and rRNA cyto 89.3 0.78 1.7E-05 49.1 6.5 85 116-212 156-247 (355)
123 PRK11727 23S rRNA mA1618 methy 89.3 0.92 2E-05 47.8 6.8 44 115-160 113-158 (321)
124 PRK05785 hypothetical protein; 89.0 1.4 3E-05 44.1 7.6 93 117-244 52-145 (226)
125 COG3963 Phospholipid N-methylt 88.9 1.9 4.1E-05 40.6 7.7 85 116-210 48-133 (194)
126 PLN02781 Probable caffeoyl-CoA 88.4 3.1 6.7E-05 41.8 9.7 105 118-250 70-185 (234)
127 PLN02366 spermidine synthase 88.1 21 0.00045 37.5 15.9 150 117-298 92-254 (308)
128 COG2521 Predicted archaeal met 87.9 2.1 4.5E-05 42.5 7.7 134 116-275 134-275 (287)
129 TIGR00406 prmA ribosomal prote 87.7 0.69 1.5E-05 48.0 4.7 44 117-161 160-203 (288)
130 TIGR02072 BioC biotin biosynth 87.6 1.3 2.9E-05 43.7 6.6 74 117-205 35-109 (240)
131 PRK15451 tRNA cmo(5)U34 methyl 87.5 2.5 5.4E-05 42.7 8.5 42 118-161 58-103 (247)
132 PRK06202 hypothetical protein; 87.0 1.6 3.4E-05 43.6 6.6 45 116-160 60-108 (232)
133 PRK00312 pcm protein-L-isoaspa 86.5 1.1 2.4E-05 44.0 5.2 72 116-204 78-154 (212)
134 KOG3191|consensus 86.5 2.2 4.7E-05 40.8 6.7 135 117-275 44-191 (209)
135 PRK04148 hypothetical protein; 86.3 2 4.3E-05 39.2 6.2 51 117-171 17-68 (134)
136 PRK11188 rrmJ 23S rRNA methylt 86.2 0.76 1.7E-05 45.3 3.8 69 118-201 53-124 (209)
137 PTZ00146 fibrillarin; Provisio 86.1 15 0.00033 38.1 13.3 148 117-298 133-287 (293)
138 PF02384 N6_Mtase: N-6 DNA Met 86.1 1.1 2.5E-05 46.8 5.3 42 117-159 47-96 (311)
139 PRK00107 gidB 16S rRNA methylt 85.9 1.9 4E-05 41.8 6.2 69 117-201 46-119 (187)
140 KOG2187|consensus 85.3 1.3 2.7E-05 48.8 5.2 41 118-160 385-425 (534)
141 PF01189 Nol1_Nop2_Fmu: NOL1/N 85.3 3.3 7.1E-05 42.9 8.2 82 118-212 87-174 (283)
142 PRK13944 protein-L-isoaspartat 84.8 1.3 2.9E-05 43.4 4.8 43 118-160 74-117 (205)
143 PRK06922 hypothetical protein; 84.8 1.8 4E-05 49.5 6.4 76 117-205 419-498 (677)
144 PLN02244 tocopherol O-methyltr 84.8 1.7 3.7E-05 46.2 5.9 42 116-159 118-160 (340)
145 TIGR03840 TMPT_Se_Te thiopurin 84.6 1.5 3.2E-05 43.5 4.9 39 118-158 36-74 (213)
146 COG3897 Predicted methyltransf 84.3 0.65 1.4E-05 44.8 2.1 80 115-209 78-157 (218)
147 PRK15068 tRNA mo(5)U34 methylt 84.1 1.7 3.6E-05 46.0 5.4 37 118-155 124-160 (322)
148 COG0030 KsgA Dimethyladenosine 84.0 1.8 4E-05 44.0 5.4 71 117-203 31-104 (259)
149 PF02005 TRM: N2,N2-dimethylgu 83.7 1.2 2.7E-05 47.9 4.3 58 116-174 49-115 (377)
150 PRK12335 tellurite resistance 83.1 1.5 3.2E-05 45.5 4.5 40 119-160 123-162 (287)
151 TIGR01934 MenG_MenH_UbiE ubiqu 83.0 2.6 5.7E-05 41.2 6.1 46 116-161 39-85 (223)
152 KOG2078|consensus 82.9 0.87 1.9E-05 48.8 2.6 54 119-174 252-312 (495)
153 TIGR01983 UbiG ubiquinone bios 82.9 3 6.5E-05 41.1 6.5 43 116-160 45-87 (224)
154 COG1041 Predicted DNA modifica 82.8 1.7 3.8E-05 45.8 4.8 138 119-296 200-345 (347)
155 COG2226 UbiE Methylase involve 82.7 2.9 6.4E-05 42.0 6.2 46 116-162 51-97 (238)
156 PLN02233 ubiquinone biosynthes 82.4 2.4 5.3E-05 43.3 5.7 44 117-160 74-118 (261)
157 TIGR02081 metW methionine bios 82.2 2.1 4.5E-05 41.5 4.9 72 118-205 15-86 (194)
158 PRK05134 bifunctional 3-demeth 82.1 4.5 9.7E-05 40.2 7.4 43 116-160 48-90 (233)
159 TIGR02469 CbiT precorrin-6Y C5 82.0 2.3 5E-05 37.2 4.8 43 118-160 21-63 (124)
160 PRK00216 ubiE ubiquinone/menaq 82.0 2.7 5.9E-05 41.6 5.8 45 117-161 52-97 (239)
161 PF00398 RrnaAD: Ribosomal RNA 81.9 1.2 2.6E-05 45.5 3.2 55 116-172 30-87 (262)
162 PRK13255 thiopurine S-methyltr 81.8 2.2 4.9E-05 42.3 5.0 39 117-157 38-76 (218)
163 PF05185 PRMT5: PRMT5 arginine 81.6 1.4 3.1E-05 48.6 3.8 101 116-246 186-297 (448)
164 PF01564 Spermine_synth: Sperm 80.8 20 0.00043 36.3 11.6 142 117-285 77-228 (246)
165 TIGR00452 methyltransferase, p 80.2 3.2 7E-05 43.6 5.8 38 118-156 123-160 (314)
166 PF08241 Methyltransf_11: Meth 80.1 3.9 8.5E-05 33.6 5.3 68 121-204 1-70 (95)
167 TIGR00478 tly hemolysin TlyA f 80.0 2.8 6E-05 42.0 5.0 39 116-155 75-113 (228)
168 PRK14103 trans-aconitate 2-met 79.9 3.4 7.3E-05 41.9 5.7 70 117-206 30-101 (255)
169 PF02086 MethyltransfD12: D12 79.8 1.3 2.9E-05 44.7 2.8 41 116-158 20-60 (260)
170 PRK07580 Mg-protoporphyrin IX 79.5 3 6.5E-05 41.2 5.1 43 117-161 64-106 (230)
171 PRK04457 spermidine synthase; 78.9 5.6 0.00012 40.6 7.0 104 118-248 68-179 (262)
172 PRK13942 protein-L-isoaspartat 78.9 4.1 8.9E-05 40.2 5.8 44 117-160 77-121 (212)
173 PF07021 MetW: Methionine bios 78.3 5.6 0.00012 38.5 6.2 67 118-201 15-82 (193)
174 PRK00050 16S rRNA m(4)C1402 me 78.2 5.9 0.00013 41.2 6.9 58 118-175 21-82 (296)
175 PRK11088 rrmA 23S rRNA methylt 78.1 3.6 7.7E-05 42.2 5.3 54 117-170 86-142 (272)
176 TIGR00438 rrmJ cell division p 77.0 3 6.6E-05 40.1 4.1 48 118-171 34-82 (188)
177 PRK11783 rlmL 23S rRNA m(2)G24 76.9 9.9 0.00022 44.6 9.1 80 143-244 259-347 (702)
178 PLN02336 phosphoethanolamine N 76.9 2.8 6E-05 46.7 4.4 152 118-297 39-211 (475)
179 PF01209 Ubie_methyltran: ubiE 76.8 2.5 5.4E-05 42.4 3.6 101 117-247 48-156 (233)
180 PTZ00098 phosphoethanolamine N 76.7 4.6 0.0001 41.2 5.6 45 116-162 52-97 (263)
181 KOG1271|consensus 75.8 7.9 0.00017 37.1 6.3 41 119-160 70-110 (227)
182 PRK14121 tRNA (guanine-N(7)-)- 75.0 8 0.00017 41.8 7.0 76 117-205 123-203 (390)
183 PRK08317 hypothetical protein; 73.8 7.3 0.00016 38.3 6.1 43 117-159 20-63 (241)
184 PF01555 N6_N4_Mtase: DNA meth 73.4 4.8 0.0001 39.3 4.7 37 118-156 193-229 (231)
185 COG2813 RsmC 16S RNA G1207 met 73.2 7.7 0.00017 40.2 6.1 70 117-203 159-233 (300)
186 TIGR00477 tehB tellurite resis 72.8 6.6 0.00014 38.1 5.4 41 117-159 31-71 (195)
187 PRK13943 protein-L-isoaspartat 72.3 7.7 0.00017 40.9 6.0 43 117-159 81-124 (322)
188 PF03848 TehB: Tellurite resis 70.9 6.8 0.00015 38.1 4.8 41 116-158 30-70 (192)
189 PLN02490 MPBQ/MSBQ methyltrans 70.7 11 0.00023 40.2 6.7 55 116-171 113-170 (340)
190 smart00828 PKS_MT Methyltransf 70.2 7.8 0.00017 38.1 5.3 43 119-161 2-44 (224)
191 COG1867 TRM1 N2,N2-dimethylgua 70.0 10 0.00022 40.3 6.2 58 117-176 53-117 (380)
192 PF13489 Methyltransf_23: Meth 69.4 7.7 0.00017 35.5 4.8 38 116-155 22-59 (161)
193 KOG1500|consensus 68.5 9 0.0002 40.0 5.3 109 116-249 177-285 (517)
194 COG4076 Predicted RNA methylas 68.0 5.1 0.00011 38.5 3.1 40 119-160 35-74 (252)
195 PF11599 AviRa: RRNA methyltra 67.3 7.1 0.00015 38.4 4.1 46 115-160 50-97 (246)
196 TIGR03438 probable methyltrans 66.8 11 0.00025 39.2 5.9 55 118-172 65-126 (301)
197 PF01728 FtsJ: FtsJ-like methy 66.3 5.3 0.00012 38.0 3.1 111 116-247 23-141 (181)
198 TIGR00740 methyltransferase, p 65.5 16 0.00035 36.5 6.5 42 117-160 54-99 (239)
199 KOG1270|consensus 65.4 6.1 0.00013 40.0 3.3 40 118-159 91-130 (282)
200 TIGR01444 fkbM_fam methyltrans 65.3 9.8 0.00021 34.4 4.5 42 119-160 1-42 (143)
201 PRK11873 arsM arsenite S-adeno 63.3 16 0.00034 37.3 6.1 44 117-160 78-122 (272)
202 PLN02476 O-methyltransferase 63.0 24 0.00052 36.4 7.3 103 117-247 119-230 (278)
203 PLN02336 phosphoethanolamine N 62.8 10 0.00022 42.3 4.9 44 116-161 266-310 (475)
204 PF03291 Pox_MCEL: mRNA cappin 60.4 8.3 0.00018 40.9 3.5 41 116-157 62-102 (331)
205 cd05291 HicDH_like L-2-hydroxy 60.2 80 0.0017 32.9 10.8 145 125-299 6-175 (306)
206 PLN03075 nicotianamine synthas 59.2 45 0.00097 34.8 8.5 45 116-160 123-169 (296)
207 PRK11524 putative methyltransf 58.8 12 0.00025 38.8 4.2 40 119-160 211-250 (284)
208 COG0116 Predicted N6-adenine-s 58.7 16 0.00035 39.2 5.2 74 142-239 256-336 (381)
209 KOG0820|consensus 57.9 25 0.00055 35.9 6.1 79 117-208 59-137 (315)
210 PRK13699 putative methylase; P 57.2 15 0.00033 36.6 4.6 40 118-159 165-204 (227)
211 PF05401 NodS: Nodulation prot 54.4 19 0.00041 35.1 4.5 68 118-203 45-115 (201)
212 KOG1122|consensus 53.1 23 0.0005 38.4 5.2 83 114-212 239-330 (460)
213 PF10294 Methyltransf_16: Puta 52.7 24 0.00051 33.6 4.9 43 116-160 45-88 (173)
214 KOG2361|consensus 52.6 19 0.00041 36.2 4.2 41 119-161 74-118 (264)
215 PF02390 Methyltransf_4: Putat 51.3 38 0.00083 32.9 6.2 124 119-268 20-149 (195)
216 KOG1499|consensus 50.4 16 0.00034 38.6 3.5 42 118-160 62-106 (346)
217 PRK11760 putative 23S rRNA C24 50.2 26 0.00057 37.2 5.1 74 115-207 210-283 (357)
218 PHA01634 hypothetical protein 39.7 45 0.00098 30.2 4.1 44 117-161 29-72 (156)
219 COG4106 Tam Trans-aconitate me 38.2 72 0.0016 31.7 5.6 104 115-250 29-133 (257)
220 COG4747 ACT domain-containing 36.5 51 0.0011 29.2 3.9 38 240-285 7-45 (142)
221 COG4671 Predicted glycosyl tra 35.8 65 0.0014 34.3 5.2 69 194-269 43-134 (400)
222 PRK11705 cyclopropane fatty ac 34.8 52 0.0011 35.6 4.7 42 118-161 169-211 (383)
223 COG0220 Predicted S-adenosylme 34.2 1.2E+02 0.0025 30.4 6.7 78 118-207 50-132 (227)
224 COG4262 Predicted spermidine s 31.5 3.2E+02 0.0069 29.5 9.4 132 136-301 310-455 (508)
225 PF13679 Methyltransf_32: Meth 31.2 96 0.0021 28.2 5.2 44 115-159 24-72 (141)
226 cd00300 LDH_like L-lactate deh 30.6 1.6E+02 0.0034 30.7 7.3 91 194-299 68-173 (300)
227 COG2230 Cfa Cyclopropane fatty 30.4 77 0.0017 32.8 4.7 44 115-160 71-115 (283)
228 PF01135 PCMT: Protein-L-isoas 30.3 78 0.0017 31.2 4.7 75 116-205 72-152 (209)
229 COG3392 Adenine-specific DNA m 30.0 43 0.00093 34.1 2.7 33 119-153 30-62 (330)
230 KOG2198|consensus 29.6 65 0.0014 34.4 4.1 89 117-211 156-253 (375)
231 COG3640 CooC CO dehydrogenase 29.5 6.1E+02 0.013 25.7 11.1 104 142-253 31-149 (255)
232 TIGR00571 dam DNA adenine meth 28.1 38 0.00083 34.6 2.2 38 119-160 28-65 (266)
233 PRK13256 thiopurine S-methyltr 27.4 90 0.002 31.2 4.6 40 118-159 45-84 (226)
234 PF03807 F420_oxidored: NADP o 26.7 2E+02 0.0044 23.6 6.1 49 124-173 4-58 (96)
235 TIGR01771 L-LDH-NAD L-lactate 24.8 6.5E+02 0.014 26.1 10.6 93 194-299 66-171 (299)
236 COG4017 Uncharacterized protei 23.0 1.1E+02 0.0023 29.8 3.9 19 231-249 115-133 (254)
237 PF03721 UDPG_MGDP_dh_N: UDP-g 21.3 2.2E+02 0.0049 27.2 6.0 104 130-248 15-123 (185)
238 TIGR00006 S-adenosyl-methyltra 21.2 2.5E+02 0.0054 29.4 6.6 55 119-174 23-82 (305)
239 PRK01544 bifunctional N5-gluta 21.0 2.4E+02 0.0051 31.9 6.9 128 116-270 347-480 (506)
No 1
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=3.8e-65 Score=532.57 Aligned_cols=173 Identities=31% Similarity=0.585 Sum_probs=154.3
Q ss_pred eecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcCCCcccccchHHHHHHhhcccccccCcCCCCCCccceEE
Q psy12304 120 CLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQECSVIQDDCNLVLKSLLKGHTQHKGVSLPQKHEVDLIV 199 (620)
Q Consensus 120 ~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p~~~~~~~di~~~~~~~~~~~~~~~~~~~p~~~~vD~i~ 199 (620)
++|||||||||++||++||+ ++++|+|+|+.|++||++|||+ .++.+||.++. ...+| ++|+|+
T Consensus 1 vidLF~G~GG~~~Gl~~aG~-~~~~a~e~~~~a~~ty~~N~~~-~~~~~Di~~~~-----------~~~~~---~~dvl~ 64 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGF-KCVFASEIDKYAQKTYEANFGN-KVPFGDITKIS-----------PSDIP---DFDILL 64 (315)
T ss_pred CEEEecCccHHHHHHHHcCC-eEEEEEeCCHHHHHHHHHhCCC-CCCccChhhhh-----------hhhCC---CcCEEE
Confidence 58999999999999999998 9999999999999999999998 66778998762 12344 799999
Q ss_pred ecCCCCccccccccchhhhcccccchHHHHHHHhhhcCCcEEEEccccccccccchhHHHHHHHHHHcCCCEEEEEEEec
Q psy12304 200 AGPPCQGFSQLNRARELEKSKLKNGLVFTFLSFCDLFQPKYIILENVTGLVHFNKNEILQCIFHCLLKMNYQVTFDVLQS 279 (620)
Q Consensus 200 gGpPCQ~fS~~~~~~~~~~~d~r~~L~~~~~~~i~~~~P~~~v~ENV~gl~~~~~~~~~~~i~~~l~~~GY~v~~~~l~A 279 (620)
||||||+||.+|+.+ +.+|.|+.|+.+++++|+..+|++|+||||+||++.+++..++.++..|+++||++.+.+|||
T Consensus 65 gg~PCq~fS~ag~~~--~~~d~r~~L~~~~~r~i~~~~P~~~v~ENV~~l~~~~~~~~~~~i~~~l~~~GY~v~~~~l~a 142 (315)
T TIGR00675 65 GGFPCQPFSIAGKRK--GFEDTRGTLFFEIVRILKEKKPKFFLLENVKGLVSHDKGRTFKVIIETLEELGYKVYYKVLNA 142 (315)
T ss_pred ecCCCcccchhcccC--CCCCchhhHHHHHHHHHhhcCCCEEEeeccHHHHhcccchHHHHHHHHHHhCCCEEEEEEEcH
Confidence 999999999999744 346889999999999999999999999999999998888999999999999999999999999
Q ss_pred CCCCCcccccEEEEEEec-CCCC-CCCCCCCCc
Q psy12304 280 GNYGVAQSRNRVVILASK-PGYK-LPSFPQPLH 310 (620)
Q Consensus 280 ~~yGvPQ~R~R~fivg~~-~~~~-~p~~P~pth 310 (620)
++||+||+|+|+|+||.+ .+.. ...+|.|+|
T Consensus 143 ~dyGvPQ~R~R~f~ia~r~~~~~~~~~~p~~~~ 175 (315)
T TIGR00675 143 KDFGVPQNRERIYIVGFRDFDDKLNFEFPKPIY 175 (315)
T ss_pred HHCCCCCCccEEEEEEEeCCCcCcCCCCCCCcc
Confidence 999999999999999999 4422 245676664
No 2
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=100.00 E-value=2.2e-64 Score=532.35 Aligned_cols=196 Identities=41% Similarity=0.749 Sum_probs=159.7
Q ss_pred cceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcCCCcccccchHHHHHHhhcccccccCcCCCCCCccce
Q psy12304 118 LKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQECSVIQDDCNLVLKSLLKGHTQHKGVSLPQKHEVDL 197 (620)
Q Consensus 118 l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p~~~~~~~di~~~~~~~~~~~~~~~~~~~p~~~~vD~ 197 (620)
++++||||||||+++||+++|+ +++||+|+|+.|++||++||| .+..+||.++... .+|. ++||
T Consensus 1 ~~~~dlFsG~Gg~~~g~~~ag~-~~~~a~e~~~~a~~~y~~N~~--~~~~~Di~~~~~~-----------~l~~--~~D~ 64 (335)
T PF00145_consen 1 MKVIDLFSGIGGFSLGLEQAGF-EVVWAVEIDPDACETYKANFP--EVICGDITEIDPS-----------DLPK--DVDL 64 (335)
T ss_dssp EEEEEET-TTTHHHHHHHHTTE-EEEEEEESSHHHHHHHHHHHT--EEEESHGGGCHHH-----------HHHH--T-SE
T ss_pred CcEEEEccCccHHHHHHHhcCc-EEEEEeecCHHHHHhhhhccc--ccccccccccccc-----------cccc--cceE
Confidence 5899999999999999999998 999999999999999999999 6778899876332 3442 6999
Q ss_pred EEecCCCCccccccccchhhhcccccchHHHHHHHhhhcCCcEEEEccccccccccchhHHHHHHHHHHcCCCEEEEEEE
Q psy12304 198 IVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLSFCDLFQPKYIILENVTGLVHFNKNEILQCIFHCLLKMNYQVTFDVL 277 (620)
Q Consensus 198 i~gGpPCQ~fS~~~~~~~~~~~d~r~~L~~~~~~~i~~~~P~~~v~ENV~gl~~~~~~~~~~~i~~~l~~~GY~v~~~~l 277 (620)
|+||||||+||.+|+ .++.+|.|+.|+++++++|+.++|++||||||+||++.+.+..++.+++.|.++||+|.+.+|
T Consensus 65 l~ggpPCQ~fS~ag~--~~~~~d~r~~L~~~~~~~v~~~~Pk~~~~ENV~~l~~~~~~~~~~~i~~~l~~lGY~v~~~vl 142 (335)
T PF00145_consen 65 LIGGPPCQGFSIAGK--RKGFDDPRNSLFFEFLRIVKELKPKYFLLENVPGLLSSKNGEVFKEILEELEELGYNVQWRVL 142 (335)
T ss_dssp EEEE---TTTSTTST--HHCCCCHTTSHHHHHHHHHHHHS-SEEEEEEEGGGGTGGGHHHHHHHHHHHHHTTEEEEEEEE
T ss_pred EEeccCCceEecccc--ccccccccchhhHHHHHHHhhccceEEEecccceeeccccccccccccccccccceeehhccc
Confidence 999999999999997 345678999999999999999999999999999999998889999999999999999999999
Q ss_pred ecCCCCCcccccEEEEEEecCCCCCC-CCCCCCccccccccccccccccccCCCCCCccccHHHHHhcCCCCC
Q psy12304 278 QSGNYGVAQSRNRVVILASKPGYKLP-SFPQPLHAFSNQLFTINGNLVANKTSHAPYRSITVRDAISDLPRVS 349 (620)
Q Consensus 278 ~A~~yGvPQ~R~R~fivg~~~~~~~p-~~P~pth~~~~~l~~~~~~~~~~~~~~~p~~~~tv~dai~dLp~~~ 349 (620)
||++||+||+|+|+||||.+.+...+ ..+.+.+.+. .+ ...++.++|.||+...
T Consensus 143 na~~yGvPQ~R~R~fivg~r~~~~~~~~~~~~~~~~~-----------------~~-~~~~~~~~i~dl~~~~ 197 (335)
T PF00145_consen 143 NAADYGVPQNRERVFIVGIRKDLPLPPPFPIPKFDFP-----------------EP-KDPTVSDAIRDLPDEP 197 (335)
T ss_dssp EGGGGTSSBE-EEEEEEEEEGGG--TSSCCGTTEEC------------------SS-CG-SHHHHHGGGSTSC
T ss_pred cHhhCCCCCceeeEEEEEECCCCCccccccccccccc-----------------cc-ccccceeeEeeccccc
Confidence 99999999999999999999986543 2333332211 00 1157899999998753
No 3
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.2e-62 Score=517.03 Aligned_cols=322 Identities=34% Similarity=0.551 Sum_probs=241.8
Q ss_pred CCcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcCCCcccccchHHHHHHhhcccccccCcCCCCCCcc
Q psy12304 116 TPLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQECSVIQDDCNLVLKSLLKGHTQHKGVSLPQKHEV 195 (620)
Q Consensus 116 ~~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p~~~~~~~di~~~~~~~~~~~~~~~~~~~p~~~~v 195 (620)
.+++++||||||||+++||+++|| ++++|+|+|+.|++||++||+...+...||.++.. ..++.. ++
T Consensus 2 ~~~~~idLFsG~GG~~lGf~~agf-~~~~a~Eid~~a~~ty~~n~~~~~~~~~di~~~~~-----------~~~~~~-~~ 68 (328)
T COG0270 2 EKMKVIDLFAGIGGLSLGFEEAGF-EIVFANEIDPPAVATYKANFPHGDIILGDIKELDG-----------EALRKS-DV 68 (328)
T ss_pred CCceEEeeccCCchHHHHHHhcCC-eEEEEEecCHHHHHHHHHhCCCCceeechHhhcCh-----------hhcccc-CC
Confidence 468999999999999999999998 99999999999999999999977777788877632 222211 79
Q ss_pred ceEEecCCCCccccccccchhhhcccccchHHHHHHHhhhcCCcEEEEccccccccccchhHHHHHHHHHHcCCCEEEEE
Q psy12304 196 DLIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLSFCDLFQPKYIILENVTGLVHFNKNEILQCIFHCLLKMNYQVTFD 275 (620)
Q Consensus 196 D~i~gGpPCQ~fS~~~~~~~~~~~d~r~~L~~~~~~~i~~~~P~~~v~ENV~gl~~~~~~~~~~~i~~~l~~~GY~v~~~ 275 (620)
|+|+||||||+||.||+. +..+|+|+.|+++++++|+..+|++||||||+||++. ++..++.+++.|.++||.+.+.
T Consensus 69 DvligGpPCQ~FS~aG~r--~~~~D~R~~L~~~~~r~I~~~~P~~fv~ENV~gl~~~-~~~~~~~i~~~L~~~GY~~~~~ 145 (328)
T COG0270 69 DVLIGGPPCQDFSIAGKR--RGYDDPRGSLFLEFIRLIEQLRPKFFVLENVKGLLSS-KGQTFDEIKKELEELGYGVEFN 145 (328)
T ss_pred CEEEeCCCCcchhhcCcc--cCCcCccceeeHHHHHHHHhhCCCEEEEecCchHHhc-CchHHHHHHHHHHHcCCcchHh
Confidence 999999999999999984 5678999999999999999999999999999999998 7889999999999999999999
Q ss_pred EEecCCCCCcccccEEEEEEecCCCCCCCCC--CCCccccccccccccccccccCCCCCCccccHHHHHhc--CCCCCCC
Q psy12304 276 VLQSGNYGVAQSRNRVVILASKPGYKLPSFP--QPLHAFSNQLFTINGNLVANKTSHAPYRSITVRDAISD--LPRVSQG 351 (620)
Q Consensus 276 ~l~A~~yGvPQ~R~R~fivg~~~~~~~p~~P--~pth~~~~~l~~~~~~~~~~~~~~~p~~~~tv~dai~d--Lp~~~~~ 351 (620)
+|||++|||||+|+|+||||.+.+....... .+.+ .....++.+++++ ++....-
T Consensus 146 ilna~dyGvPQ~ReRvfiig~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~i~~~~~~~~~~~ 204 (328)
T COG0270 146 ILNAADYGVPQSRERVFIVGFRRDNIDLDPNVLPPLP---------------------LGRKKTLKEALKNNDLPETDEL 204 (328)
T ss_pred eeeHHhcCCCCCccEEEEEEecCccccccccccCccc---------------------cccccchhhhhhhccCcchhhh
Confidence 9999999999999999999998751111111 1110 0123466677763 3221100
Q ss_pred CCccccCCCCCcHHHHHHhcCCCccchhhhhhhhhhhhhhhhcChHHHHHhhccCCCCCCCCCCCccccccCCCCCcccc
Q psy12304 352 ANCYLFHNPPKTHFQRMMKDGSRIHDIHINLRELLQDHICKILSPLMEMRIRLIPSFPNADWRDLPNICVKLPRGQHSYT 431 (620)
Q Consensus 352 ~~~~~y~~~p~~~~q~~~r~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ri~~ip~~~g~~~~~l~~~~~~l~~g~~~~~ 431 (620)
+.. + ....|... .++......+.+....
T Consensus 205 -----~~~-------~-----------------~~~~~~~~-----------~~~~~~~~~~~~~~~~------------ 232 (328)
T COG0270 205 -----YLS-------R-----------------DLRNHEAK-----------SLPKNKGERLPSLRWG------------ 232 (328)
T ss_pred -----hcc-------c-----------------cccccccc-----------cCchhhhccccccccc------------
Confidence 000 0 00011000 0000000000000000
Q ss_pred chhhhcccccccccccCCCCCcccCCCCccccccccccccccCCcchhccccccccccccccCCcccccccccccccccC
Q psy12304 432 EKLKYNAKKKKSVCDCKSSSSCTSKGQKNTIIPWSLVHTASRNNNWQGVLGRLAWDESFDMTGQKNTIIPWSLVHTASRN 511 (620)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~p~~~~~~~~~~ 511 (620)
.. .+..+.
T Consensus 233 --------------------------------------------------------~~----------------~~~~~~ 240 (328)
T COG0270 233 --------------------------------------------------------EA----------------LTLSRR 240 (328)
T ss_pred --------------------------------------------------------cc----------------cccccc
Confidence 00 000000
Q ss_pred cccccccccccCCCCCccccccCCCCCCCCceeecCCceeccHHHHHHhcCCCCCcEEcccccchhhhcccCCChHHHHH
Q psy12304 512 NNWQGVLGRLAWDESFDTIVTTPNPLNKQGKILHPEQDRVLTVREYARAQGFPDSYVFRGGICDMYKQIGNAVPPPLAKA 591 (620)
Q Consensus 512 ~~~~~~y~Rl~~~~~~~Ti~t~~~~~~~~g~~iHp~~~R~LTvRE~ARlQgFPD~y~f~g~~~~~~rqIGNAVpp~la~a 591 (620)
......|.||.|+++++|++.. .....+||.+.|.||+||+||||||||+|+|.|+.+++|+||||||||++|++
T Consensus 241 ~~~~~~~~rl~~~~~~~t~~~~-----~~~~~~h~~~~r~lt~rE~arlq~fPd~~~~~gs~~~~~~qiGnsVp~~l~~~ 315 (328)
T COG0270 241 YKGKGSYIRLHPDKPAPTVRGG-----GNERFIHPLEDRELTVREAARLQGFPDDFVFPGSKTDQYRQIGNSVPPLLAEA 315 (328)
T ss_pred cCCCceeEeCCCCCCCceeecC-----CCcccCCCCcCCCCCHHHHHHhcCCCCceEEeccchhhhhhccCcCCHHHHHH
Confidence 0115678999999999999832 23468999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcc
Q psy12304 592 IGYEIIKCIGNA 603 (620)
Q Consensus 592 ig~~l~~~l~~~ 603 (620)
||++|.+.|.+.
T Consensus 316 ia~~i~~~l~~~ 327 (328)
T COG0270 316 IAKAILKKLNEK 327 (328)
T ss_pred HHHHHHHHhhcC
Confidence 999999998764
No 4
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=100.00 E-value=6.1e-62 Score=499.35 Aligned_cols=169 Identities=32% Similarity=0.583 Sum_probs=152.5
Q ss_pred cceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcCCCcccccchHHHHHHhhcccccccCcCCCCCCccce
Q psy12304 118 LKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQECSVIQDDCNLVLKSLLKGHTQHKGVSLPQKHEVDL 197 (620)
Q Consensus 118 l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p~~~~~~~di~~~~~~~~~~~~~~~~~~~p~~~~vD~ 197 (620)
++++|||||+||+++||+++|+ ++++|+|+|+.|++||++|||+. ++++||.++.. ..+ .+++|+
T Consensus 1 ~~v~dLFsG~Gg~~~gl~~~G~-~~v~a~e~~~~a~~~~~~N~~~~-~~~~Di~~~~~-----------~~~--~~~~D~ 65 (275)
T cd00315 1 LRVIDLFAGIGGFRLGLEKAGF-EIVAANEIDKSAAETYEANFPNK-LIEGDITKIDE-----------KDF--IPDIDL 65 (275)
T ss_pred CcEEEEccCcchHHHHHHHcCC-EEEEEEeCCHHHHHHHHHhCCCC-CccCccccCch-----------hhc--CCCCCE
Confidence 5799999999999999999998 99999999999999999999876 66788876521 111 247999
Q ss_pred EEecCCCCccccccccchhhhcccccchHHHHHHHhhhcCCcEEEEccccccccccchhHHHHHHHHHHcCCCEEEEEEE
Q psy12304 198 IVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLSFCDLFQPKYIILENVTGLVHFNKNEILQCIFHCLLKMNYQVTFDVL 277 (620)
Q Consensus 198 i~gGpPCQ~fS~~~~~~~~~~~d~r~~L~~~~~~~i~~~~P~~~v~ENV~gl~~~~~~~~~~~i~~~l~~~GY~v~~~~l 277 (620)
|+||||||+||.+|+. ++.+|+|+.|+.+++++|+..+|++|+||||+||++.+++..++.+++.|.++||++.+.+|
T Consensus 66 l~~gpPCq~fS~ag~~--~~~~d~r~~L~~~~~~~i~~~~P~~~v~ENV~g~~~~~~~~~~~~i~~~l~~~GY~~~~~~l 143 (275)
T cd00315 66 LTGGFPCQPFSIAGKR--KGFEDTRGTLFFEIIRILKEKKPKYFLLENVKGLLTHDNGNTLKVILNTLEELGYNVYWKLL 143 (275)
T ss_pred EEeCCCChhhhHHhhc--CCCCCchHHHHHHHHHHHHhcCCCEEEEEcCcchhccCchHHHHHHHHHHHhCCcEEEEEEE
Confidence 9999999999999974 34568899999999999999999999999999999988889999999999999999999999
Q ss_pred ecCCCCCcccccEEEEEEecCCCCCC
Q psy12304 278 QSGNYGVAQSRNRVVILASKPGYKLP 303 (620)
Q Consensus 278 ~A~~yGvPQ~R~R~fivg~~~~~~~p 303 (620)
||++||+||+|+|+|+||.+.+...+
T Consensus 144 ~a~~~GvPQ~R~R~~~ia~~~~~~~~ 169 (275)
T cd00315 144 NASDYGVPQNRERVFIIGIRKDLILN 169 (275)
T ss_pred EHHHcCCCCCCcEEEEEEEeCCCCcc
Confidence 99999999999999999999886543
No 5
>PRK10458 DNA cytosine methylase; Provisional
Probab=100.00 E-value=1.1e-55 Score=476.87 Aligned_cols=184 Identities=23% Similarity=0.425 Sum_probs=153.8
Q ss_pred CCCCcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhc---CCCcccccchHHHHHHhhc----ccccc-c
Q psy12304 114 LDTPLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANF---QECSVIQDDCNLVLKSLLK----GHTQH-K 185 (620)
Q Consensus 114 ~~~~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~---p~~~~~~~di~~~~~~~~~----~~~~~-~ 185 (620)
...+++++||||||||+++||+++|+ ++++|+|+|+.|++||++|| |++.++++||.++...-.. .+... .
T Consensus 85 ~~~~~~~iDLFsGiGGl~lGfe~aG~-~~v~a~Eid~~A~~TY~~N~~~~p~~~~~~~DI~~i~~~~~~~~~~~~~~~~~ 163 (467)
T PRK10458 85 PHYAFRFIDLFAGIGGIRRGFEAIGG-QCVFTSEWNKHAVRTYKANWYCDPATHRFNEDIRDITLSHKEGVSDEEAAEHI 163 (467)
T ss_pred cCCCceEEEeCcCccHHHHHHHHcCC-EEEEEEechHHHHHHHHHHcCCCCccceeccChhhCccccccccchhhhhhhh
Confidence 35689999999999999999999998 99999999999999999998 5567778899876311000 00000 0
Q ss_pred CcCCCCCCccceEEecCCCCccccccccchh------hh-cccccchHHHHHHHhhhcCCcEEEEccccccccccchhHH
Q psy12304 186 GVSLPQKHEVDLIVAGPPCQGFSQLNRAREL------EK-SKLKNGLVFTFLSFCDLFQPKYIILENVTGLVHFNKNEIL 258 (620)
Q Consensus 186 ~~~~p~~~~vD~i~gGpPCQ~fS~~~~~~~~------~~-~d~r~~L~~~~~~~i~~~~P~~~v~ENV~gl~~~~~~~~~ 258 (620)
...+| ++|||+||||||+||.+|+.++. +. .|.|+.|+++++++|++.+|++||||||+||++++++..+
T Consensus 164 ~~~~p---~~DvL~gGpPCQ~FS~AG~~k~~~~gr~~g~~~d~rg~Lf~~~~rii~~~kPk~fvlENV~gl~s~~~g~~f 240 (467)
T PRK10458 164 RQHIP---DHDVLLAGFPCQPFSLAGVSKKNSLGRAHGFECETQGTLFFDVARIIDAKRPAIFVLENVKNLKSHDKGKTF 240 (467)
T ss_pred hccCC---CCCEEEEcCCCCccchhcccccccccccccccCCccccHHHHHHHHHHHhCCCEEEEeCcHhhhcccccHHH
Confidence 11234 79999999999999999964321 22 3679999999999999999999999999999999889999
Q ss_pred HHHHHHHHcCCCEEE---------EEEEecCCCCCcccccEEEEEEecCCCCC
Q psy12304 259 QCIFHCLLKMNYQVT---------FDVLQSGNYGVAQSRNRVVILASKPGYKL 302 (620)
Q Consensus 259 ~~i~~~l~~~GY~v~---------~~~l~A~~yGvPQ~R~R~fivg~~~~~~~ 302 (620)
+.+++.|.++||.|. +.+|||.+| |||+|+|+||||.+.+..+
T Consensus 241 ~~i~~~L~~lGY~v~~~~~~g~~~~~vlna~~f-VPQ~R~RvfiVg~r~~~~~ 292 (467)
T PRK10458 241 RIIMQTLDELGYDVADAEDNGPDDPKIIDGKHF-LPQHRERIVLVGFRRDLNL 292 (467)
T ss_pred HHHHHHHHHcCCeEEeccccCcccceEeehhhC-CCccCcEEEEEEEeCCccc
Confidence 999999999999995 689999999 9999999999999987543
No 6
>KOG0919|consensus
Probab=99.95 E-value=3.7e-29 Score=238.13 Aligned_cols=165 Identities=21% Similarity=0.401 Sum_probs=137.1
Q ss_pred CCcceecccccccHHHHHHHhcCC-CccEEEEcCchhHHHHHHHhcCCCcc-cccchHHHHHHhhcccccccCcCCCCCC
Q psy12304 116 TPLKCLDLFSGCGGLMEGLCQAGV-AKPCWSVELERSEAASYDANFQECSV-IQDDCNLVLKSLLKGHTQHKGVSLPQKH 193 (620)
Q Consensus 116 ~~l~~~dLFsG~Gg~s~Gl~~aG~-~~~~~a~e~d~~a~~ty~~N~p~~~~-~~~di~~~~~~~~~~~~~~~~~~~p~~~ 193 (620)
++|+|++|++|.|||..+|+.|.+ .+++.|+|++..|.++|+.|. +..+ -..||..+.. .++ ..-
T Consensus 2 ~pLrVlelysg~ggmhyal~~a~ipaqiVaAiDvNtvANevY~~N~-h~~L~k~~~I~~lt~-----------kef-d~l 68 (338)
T KOG0919|consen 2 MPLRVLELYSGHGGMHYALEDAQIPAQIVAAIDVNTVANEVYAHNY-HSNLVKTRNIQSLTV-----------KEF-DKL 68 (338)
T ss_pred CceehhhhhhccchhhhhHhhhcCchhhEEEEecchhHHHHHhcCc-ccchhhccccceeeH-----------hhh-hhc
Confidence 579999999999999999999988 679999999999999999993 3332 2234543311 011 112
Q ss_pred ccceEEecCCCCccccccccchhhhcccccchHHHHHHHhhhcC--CcEEEEccccccccccchhHHHHHHHHHHcCCCE
Q psy12304 194 EVDLIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLSFCDLFQ--PKYIILENVTGLVHFNKNEILQCIFHCLLKMNYQ 271 (620)
Q Consensus 194 ~vD~i~gGpPCQ~fS~~~~~~~~~~~d~r~~L~~~~~~~i~~~~--P~~~v~ENV~gl~~~~~~~~~~~i~~~l~~~GY~ 271 (620)
++|++..+||||+|...|+. ++..|+|+..|.+.+.++-+.+ |+|++||||.|+-++ ..-.++++.|+..||+
T Consensus 69 ~~~m~lMSPpCQPfTRiG~q--~D~~D~Rs~aflhil~~lP~~q~LPeYIL~ENVkGFE~S---~ar~~~i~~lencGf~ 143 (338)
T KOG0919|consen 69 QANMLLMSPPCQPFTRIGLQ--RDTEDKRSDAFLHILGLLPECQELPEYILMENVKGFESS---QARNQFIESLENCGFH 143 (338)
T ss_pred ccceEeeCCCCCchhhhccc--ccccCchhHHHHHHHhhhhhhhhhhHHHHHhhcccchhh---hHHHHHHHHHHhcCch
Confidence 68999999999999999974 5678999999999999988775 999999999999754 4566788999999999
Q ss_pred EEEEEEecCCCCCcccccEEEEEEecC
Q psy12304 272 VTFDVLQSGNYGVAQSRNRVVILASKP 298 (620)
Q Consensus 272 v~~~~l~A~~yGvPQ~R~R~fivg~~~ 298 (620)
.+.++|....||+|.+|.|+|++|...
T Consensus 144 ~~EfiLsPtqfniPNsR~Ryy~iArl~ 170 (338)
T KOG0919|consen 144 WREFILSPTQFNIPNSRYRYYCIARLG 170 (338)
T ss_pred hhheeccccccCCCCcchheeehhhhC
Confidence 999999999999999999999998653
No 7
>cd04708 BAH_plantDCM_II BAH, or Bromo Adjacent Homology domain, second copy present in DNA (Cytosine-5)-methyltransferases (DCM) from plants. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the genome. These effects include transcriptional repression via inhibition of transcription factor binding, the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting, and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.89 E-value=1.7e-23 Score=199.36 Aligned_cols=125 Identities=16% Similarity=0.195 Sum_probs=95.6
Q ss_pred CEEEEEEEeeccCCCCCCccccCCCeEEecCceeeeccccccceEEEEEeCCCCChhHhhhcCCCCCCeEEEEEEEecCC
Q psy12304 1 MKAHVQWLVRPNDTILGDKIQFDNSTLFLTNACESIDLSVIKKTVCVDFVTNDSSEEEILDNEHEEKDETIYTEYYRKTK 80 (620)
Q Consensus 1 ~~~~v~wfyRped~~~~~~~~~d~~eLf~Sd~~~~v~~~~I~gkC~V~~~~~~~~i~~~~~~~~~~pd~Fy~~~~y~~~~ 80 (620)
++|+||||||||||++...+.+|.|+||||++.+++++++|.|||.|++..+..+..+|... ++.|||.+.|+ ..
T Consensus 64 ~~vrVrwFYRPEdt~~~~~y~sd~rely~Sde~~~~~~~~I~GKC~V~~~~d~~~~~~~~~~----~~~Ffc~~~Yd-~~ 138 (202)
T cd04708 64 TQVKVRRFYRPEDVSPEKAYASDIREVYYSEDTLTVPVEAVEGKCEVRKKSDLPDSDAPVIF----EHVFFCELLYD-PA 138 (202)
T ss_pred eEEEEEEEechhhcCcccceecCceeEEEeccceeechhHcceEEEEEecCcchhhhccccC----CCceEEEEEEc-CC
Confidence 48999999999999875555889999999999999999999999999999988665566443 79999999999 88
Q ss_pred CcceecCCCCch-hhhHHhh----hcccCcCC--C--C-----CCCCCCCCcceecccccccHH
Q psy12304 81 DKHFVQPNARPL-ELAYILK----IIHSKEFL--P--K-----FPMPLDTPLKCLDLFSGCGGL 130 (620)
Q Consensus 81 ~~~~~~~~~~~~-~~~~~~~----~~~~~~~~--~--~-----~~~~~~~~l~~~dLFsG~Gg~ 130 (620)
+++|.+||.+-. ...+... ..+++|+. . . ...+...+|..||+|||||||
T Consensus 139 tg~f~~lP~~~~~~~~~~~~~~~~~~k~kgkgk~~~~~~~~~~~~~~~~~~LaTLDIFAGCGGL 202 (202)
T cd04708 139 KGSLKQLPPNIKEEAYSTGASDSALRKRKGKGKGDSESDSEAPVKAPKENRLATLDIFAGCGGL 202 (202)
T ss_pred CCccCCCCchhccccccccccccccccCCCCCcCccccccccccccccccccceeeeecccCCC
Confidence 999999877632 1112111 11222222 1 1 123456899999999999996
No 8
>cd04711 BAH_Dnmt1_II BAH, or Bromo Adjacent Homology domain, second copy present in DNA (Cytosine-5)-methyltransferases from Bilateria, Dnmt1 and similar proteins. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the genome. These effects include transcriptional repression via inhibition of transcription factor binding, the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting, and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.80 E-value=4.8e-20 Score=162.94 Aligned_cols=84 Identities=24% Similarity=0.375 Sum_probs=76.6
Q ss_pred CEEEEEEEeeccCCCCCCcc--ccCCCeEEecCceeeeccccccceEEEEEeCCCC-ChhHhhhcCCCCCCeEEEEEEEe
Q psy12304 1 MKAHVQWLVRPNDTILGDKI--QFDNSTLFLTNACESIDLSVIKKTVCVDFVTNDS-SEEEILDNEHEEKDETIYTEYYR 77 (620)
Q Consensus 1 ~~~~v~wfyRped~~~~~~~--~~d~~eLf~Sd~~~~v~~~~I~gkC~V~~~~~~~-~i~~~~~~~~~~pd~Fy~~~~y~ 77 (620)
++++|+|||||||++.+... +.|.|+||||+|.+++|++.|.|||.|++..+.. ++.+|...| ||+|||.+.|+
T Consensus 50 ikvrV~~fYRPEdi~~g~~~ayhsDirevy~Sd~~~~~~~~~I~GKC~V~~~~di~~s~~~y~~~g---pd~Fyf~~~Y~ 126 (137)
T cd04711 50 IKLRINKFYRPENTHKGFKATYHADINMLYWSDEEATVDFSAVQGRCTVEYGEDLPESVQEYSGGG---PDRFYFLEAYN 126 (137)
T ss_pred eEEEEEEEecccccccccccccccceeeEEeecceeecChhhccceEEEEeccccchhHHHHhcCC---CcceEEhhhhc
Confidence 47999999999999986655 7888999999999999999999999999999995 799997665 99999999999
Q ss_pred cCCCcceecCC
Q psy12304 78 KTKDKHFVQPN 88 (620)
Q Consensus 78 ~~~~~~~~~~~ 88 (620)
..+++|+.||
T Consensus 127 -a~t~~F~d~p 136 (137)
T cd04711 127 -AKTKSFEDPP 136 (137)
T ss_pred -cccCcccCCC
Confidence 9999999875
No 9
>cd04716 BAH_plantDCM_I BAH, or Bromo Adjacent Homology domain, first copy present in DNA (Cytosine-5)-methyltransferases (DCM) from plants. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the genome. These effects include transcriptional repression via inhibition of transcription factor binding, the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting, and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.69 E-value=3.2e-17 Score=146.05 Aligned_cols=84 Identities=18% Similarity=0.247 Sum_probs=71.6
Q ss_pred CEEEEEEEeeccCCCCCCcc-ccCCCeEEecCceeeeccccccceEEEEEeCCCCChhH-hhhcCCCCCCeEEEEEEEec
Q psy12304 1 MKAHVQWLVRPNDTILGDKI-QFDNSTLFLTNACESIDLSVIKKTVCVDFVTNDSSEEE-ILDNEHEEKDETIYTEYYRK 78 (620)
Q Consensus 1 ~~~~v~wfyRped~~~~~~~-~~d~~eLf~Sd~~~~v~~~~I~gkC~V~~~~~~~~i~~-~~~~~~~~pd~Fy~~~~y~~ 78 (620)
.+|+|||||||+||++++.. ++|++|||+|++.|++|+++|.|||.|+++++....+. -... .+++|||+|.|+
T Consensus 36 ~~~~v~WyyRpeet~~~r~~~~~~~rEvFlS~~~D~~pl~~I~~Kc~V~~~~~~~~~~~~~~~~---~~~df~c~~~Y~- 111 (122)
T cd04716 36 TYFTAQWFYRAEDTVIERQATNHDKKRVFYSEIKNDNPLDCLISKVKILQVPPNVGTKRKKPNS---EKCDYYYDMEYC- 111 (122)
T ss_pred eEEEEEEEEcHHHhccccccccCCCceEEEecccCccchhheeeeeEEEEeCCCCCcccccccC---CCceEEEeeEec-
Confidence 37999999999999998755 99999999999999999999999999999998755421 1222 489999999999
Q ss_pred CCCcceecCC
Q psy12304 79 TKDKHFVQPN 88 (620)
Q Consensus 79 ~~~~~~~~~~ 88 (620)
..+.+|..++
T Consensus 112 ~~~~tF~~~~ 121 (122)
T cd04716 112 VPYSTFQTLR 121 (122)
T ss_pred cchhheEeCC
Confidence 8888887653
No 10
>cd04710 BAH_fungalPHD BAH, or Bromo Adjacent Homology domain, as present in fungal proteins containing PHD domains. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.62 E-value=3.5e-16 Score=142.01 Aligned_cols=71 Identities=13% Similarity=0.248 Sum_probs=64.9
Q ss_pred CEEEEEEEeeccCCCCCCccccCCCeEEecCceeeeccccccceEEEEEeCCCCChhHhhhcCCCCCCeEEEEEEEe
Q psy12304 1 MKAHVQWLVRPNDTILGDKIQFDNSTLFLTNACESIDLSVIKKTVCVDFVTNDSSEEEILDNEHEEKDETIYTEYYR 77 (620)
Q Consensus 1 ~~~~v~wfyRped~~~~~~~~~d~~eLf~Sd~~~~v~~~~I~gkC~V~~~~~~~~i~~~~~~~~~~pd~Fy~~~~y~ 77 (620)
++|+|||||||+|++... .+|+||||+|+|.+.+|+++|.|||.|++.++.+++++|... ++.|||...|+
T Consensus 57 ~~vrV~wfYRp~Di~~~~--~~d~relf~S~h~d~~p~~si~gKC~V~~~~di~~l~~~~~~----~~~Fyf~~lyD 127 (135)
T cd04710 57 FQVRLNWYYRPRDISRRV--VADSRLLYASMHSDICPIGSVRGKCTVRHRDQIPDLEEYKKR----PNHFYFDQLFD 127 (135)
T ss_pred EEEEEEEEeCHHHcCCcc--cCCceEEEEEeeEeeechHHEEeEEEEEEecccchhhhhccC----CCEEEEEeeeC
Confidence 379999999999986443 789999999999999999999999999999999999999865 69999999998
No 11
>cd04709 BAH_MTA BAH, or Bromo Adjacent Homology domain, as present in MTA1 and similar proteins. The Metastasis-associated protein MTA1 is part of the NURD (nucleosome remodeling and deacetylating) complex and plays a role in cellular transformation and metastasis. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.46 E-value=6.3e-14 Score=131.06 Aligned_cols=80 Identities=21% Similarity=0.334 Sum_probs=68.0
Q ss_pred CEEEEEEEeeccCCCCCC----------------------ccccCCCeEEecCceeeeccccccceEEEEEeCCCCChhH
Q psy12304 1 MKAHVQWLVRPNDTILGD----------------------KIQFDNSTLFLTNACESIDLSVIKKTVCVDFVTNDSSEEE 58 (620)
Q Consensus 1 ~~~~v~wfyRped~~~~~----------------------~~~~d~~eLf~Sd~~~~v~~~~I~gkC~V~~~~~~~~i~~ 58 (620)
+.++|+|||||+|+.... ....+.||||+|++.+.+|+++|.|||.|+++.+..++.+
T Consensus 36 ~~vkV~wfYRp~DI~~~~~~l~~~~r~~~~~~~~~~~~~~~~~~~~rELF~S~~~d~~p~~~IrGKC~V~~~~d~~~l~~ 115 (164)
T cd04709 36 VEAKVVCYYRRRDIPDSLYQLADQHRRELEEKSDDLTPKQRHQLRHRELFLSRQVETLPATHIRGKCSVTLLNDTESARS 115 (164)
T ss_pred EEEEEEEEEChhHccchhhhhcccccccccccccccchhhhhccCcceeEEecccccccHHHeeeeEEEEEehhhhhhhh
Confidence 478999999999985421 1145899999999999999999999999999999988888
Q ss_pred hhhcCCCCCCeEEEEEEEecCCCccee
Q psy12304 59 ILDNEHEEKDETIYTEYYRKTKDKHFV 85 (620)
Q Consensus 59 ~~~~~~~~pd~Fy~~~~y~~~~~~~~~ 85 (620)
|... +|.||+...|+ +..++|.
T Consensus 116 ~~~~----~d~Ff~~~~YD-P~~k~l~ 137 (164)
T cd04709 116 YLAR----EDTFFYSLVYD-PEQKTLL 137 (164)
T ss_pred ccCC----CCEEEEEEEEC-CCCCeec
Confidence 8754 69999999999 7777664
No 12
>PF01426 BAH: BAH domain; InterPro: IPR001025 The BAH (bromo-adjacent homology) family contains proteins such as eukaryotic DNA (cytosine-5) methyltransferases IPR001525 from INTERPRO, the origin recognition complex 1 (Orc1) proteins, as well as several proteins involved in transcriptional regulation. The BAH domain appears to act as a protein-protein interaction module specialised in gene silencing, as suggested for example by its interaction within yeast Orc1p with the silent information regulator Sir1p. The BAH module might therefore play an important role by linking DNA methylation, replication and transcriptional regulation [].; GO: 0003677 DNA binding; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 3SWR_A 3PTA_A 1M4Z_A 1ZBX_A ....
Probab=99.35 E-value=9.7e-13 Score=117.89 Aligned_cols=81 Identities=23% Similarity=0.389 Sum_probs=64.0
Q ss_pred CEEEEEEEeeccCCCCCCccccCCCeEEecCceeeeccccccceEEEEEeCCCCChhHhhhcCCCCCCeEEEEEEEecCC
Q psy12304 1 MKAHVQWLVRPNDTILGDKIQFDNSTLFLTNACESIDLSVIKKTVCVDFVTNDSSEEEILDNEHEEKDETIYTEYYRKTK 80 (620)
Q Consensus 1 ~~~~v~wfyRped~~~~~~~~~d~~eLf~Sd~~~~v~~~~I~gkC~V~~~~~~~~i~~~~~~~~~~pd~Fy~~~~y~~~~ 80 (620)
++++|+|||||+|+ .......+||||+|++.+++++++|.|||.|.+.++......+...+ ++.||+++.|+ .+
T Consensus 38 ~~~~v~Wf~rp~d~--~~~~~~~~~Elf~s~~~~~~~~~~I~gkc~V~~~~~~~~~~~~~~~~---~~~F~cr~~yd-~~ 111 (119)
T PF01426_consen 38 KMVKVRWFYRPEDT--SLGKTFSPRELFLSDHCDDIPVESIRGKCNVLHLEDYEQARPYGKEE---PDTFFCRYAYD-PQ 111 (119)
T ss_dssp EEEEEEEEEEGGGS--TTGGHSCTTEEEEEEEEEEEEGGGEEEEEEEEEHHHHTTGCCHCHHT---TTEEEEEEEEE-TT
T ss_pred EEEEEEEeECcccc--cccccCCCCEEEEECcEeEEehhhEEeeeEEEECCccccccccccCC---CCEEEEEEEEe-CC
Confidence 36899999999999 22234556999999999999999999999999987654444443212 68999999999 78
Q ss_pred CcceecC
Q psy12304 81 DKHFVQP 87 (620)
Q Consensus 81 ~~~~~~~ 87 (620)
.++|..+
T Consensus 112 ~~~f~~~ 118 (119)
T PF01426_consen 112 KKRFKKL 118 (119)
T ss_dssp TTEEEE-
T ss_pred cCEEeCC
Confidence 8888754
No 13
>smart00439 BAH Bromo adjacent homology domain.
Probab=99.35 E-value=1.3e-12 Score=117.12 Aligned_cols=83 Identities=22% Similarity=0.325 Sum_probs=66.5
Q ss_pred CEEEEEEEeeccCCCCCCccccCCCeEEecCceeeeccccccceEEEEEeCCCCChhHhhhcCCCCCCeEEEEEEEecCC
Q psy12304 1 MKAHVQWLVRPNDTILGDKIQFDNSTLFLTNACESIDLSVIKKTVCVDFVTNDSSEEEILDNEHEEKDETIYTEYYRKTK 80 (620)
Q Consensus 1 ~~~~v~wfyRped~~~~~~~~~d~~eLf~Sd~~~~v~~~~I~gkC~V~~~~~~~~i~~~~~~~~~~pd~Fy~~~~y~~~~ 80 (620)
++++|||||||+|+..+....+++||||+|++.+++++++|.|||.|.+.++......-... ..++.||+++.|+ ..
T Consensus 36 ~~~~v~Wf~rp~e~~~~~~~~~~~~Elf~s~~~~~i~~~~I~~kc~V~~~~~~~~~~~~~~~--~~~~~f~cr~~yd-~~ 112 (120)
T smart00439 36 KMVRVRWFYRPEETVLEKAALFDKNEVFLSDEYDTVPLSDIIGKCNVLSKSDYPGLRPEGKI--GEPDVFFCESLYD-PE 112 (120)
T ss_pred EEEEEEEEEChhhccccccccCCCcceEEEccCccCChHHeeeEEEEEEcchhcccccccCC--CCCCeEEEEEEEc-cc
Confidence 37899999999999877666778999999999999999999999999999866433221111 1368999999999 56
Q ss_pred Ccceec
Q psy12304 81 DKHFVQ 86 (620)
Q Consensus 81 ~~~~~~ 86 (620)
.+.|..
T Consensus 113 ~~~f~~ 118 (120)
T smart00439 113 KGAFKK 118 (120)
T ss_pred cCcccC
Confidence 666654
No 14
>cd04713 BAH_plant_3 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.34 E-value=1.2e-12 Score=121.26 Aligned_cols=80 Identities=20% Similarity=0.241 Sum_probs=63.3
Q ss_pred CEEEEEEEeeccCCCCCCcc---ccCCCeEEecCceeeeccccccceEEEEEeCCCCChhHhhhcCCCCCCeEEEEEEEe
Q psy12304 1 MKAHVQWLVRPNDTILGDKI---QFDNSTLFLTNACESIDLSVIKKTVCVDFVTNDSSEEEILDNEHEEKDETIYTEYYR 77 (620)
Q Consensus 1 ~~~~v~wfyRped~~~~~~~---~~d~~eLf~Sd~~~~v~~~~I~gkC~V~~~~~~~~i~~~~~~~~~~pd~Fy~~~~y~ 77 (620)
++++|||||||+|+...... .+++||||+|++.+.|++++|.|||.|+.+++...++.-. ..+.||++..|+
T Consensus 53 ~~v~V~WFyRpeEi~~~~~~~~~~~~~~ElF~S~~~d~~~~~~I~gkc~V~~~~~~~~~~~~~-----~~~~F~cr~~yD 127 (146)
T cd04713 53 LKLEVQWLYRPEEIEKKKGGNWKAEDPRELFYSFHRDEVPAESVLHPCKVAFVPKGKQIPLRK-----GHSGFIVRRVYD 127 (146)
T ss_pred EEEEEEeeECHHHhccccccccccCCCCeEEEeCCCCcCCHHHCcceeEEEECCccccCCccC-----CCCeEEEEEEEc
Confidence 37999999999999754433 5689999999999999999999999999887654443221 247899999999
Q ss_pred cCCCcceec
Q psy12304 78 KTKDKHFVQ 86 (620)
Q Consensus 78 ~~~~~~~~~ 86 (620)
...+++-.
T Consensus 128 -~~~~~~~~ 135 (146)
T cd04713 128 -NVNKKLWK 135 (146)
T ss_pred -CCCCcEee
Confidence 56555544
No 15
>cd04712 BAH_DCM_I BAH, or Bromo Adjacent Homology domain, as present in DNA (Cytosine-5)-methyltransferases (DCM) 1. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the genome. These effects include transcriptional repression via inhibition of transcription factor binding, the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting, and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.33 E-value=2.6e-12 Score=116.29 Aligned_cols=76 Identities=29% Similarity=0.416 Sum_probs=62.2
Q ss_pred EEEEEEEeeccCCCCCCccccCCCeEEecCceeeeccc----cccceEEEEEeCCCCChhHhhhcCCCCCCeEEEEEEEe
Q psy12304 2 KAHVQWLVRPNDTILGDKIQFDNSTLFLTNACESIDLS----VIKKTVCVDFVTNDSSEEEILDNEHEEKDETIYTEYYR 77 (620)
Q Consensus 2 ~~~v~wfyRped~~~~~~~~~d~~eLf~Sd~~~~v~~~----~I~gkC~V~~~~~~~~i~~~~~~~~~~pd~Fy~~~~y~ 77 (620)
+|++||||||+||+.+. .+++||||+||++++++++ .|.+||.|++...-.. . + ..+||++.+|.
T Consensus 50 ~~h~~W~yrp~eTv~g~--~~~~~ElFLSd~c~~~~~~~~~~~I~~k~~V~~~~~~~~-----~-~---~~~~F~r~syy 118 (130)
T cd04712 50 MFHGRWLYRGCDTVLGN--YANERELFLTNECTCLELDLLSTEIKGVHKVDWSGTPWG-----K-G---LPEFFVRQSYY 118 (130)
T ss_pred EEEEEEEEcchhccccc--cCCCceEEEeccccccccccccceeEEEEEEEEecCcCC-----c-C---CCCEEEEEEEE
Confidence 79999999999999887 8999999999999999999 9999999998873321 2 2 34577776776
Q ss_pred cCCCcceecCC
Q psy12304 78 KTKDKHFVQPN 88 (620)
Q Consensus 78 ~~~~~~~~~~~ 88 (620)
..+.+.|..++
T Consensus 119 ~~e~~~F~~l~ 129 (130)
T cd04712 119 WPERGAFTSLK 129 (130)
T ss_pred CccCCceEcCC
Confidence 46888887643
No 16
>cd04714 BAH_BAHCC1 BAH, or Bromo Adjacent Homology domain, as present in mammalian BAHCC1 and similar proteins. BAHCC1 stands for BAH domain and coiled-coil containing 1. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.32 E-value=9.9e-13 Score=118.00 Aligned_cols=77 Identities=18% Similarity=0.264 Sum_probs=61.1
Q ss_pred CEEEEEEEeeccCCCCCCccccCCCeEEecCceeeeccccccceEEEEEeCCCCChhHhhhcCCCCCCeEEEEEEEe
Q psy12304 1 MKAHVQWLVRPNDTILGDKIQFDNSTLFLTNACESIDLSVIKKTVCVDFVTNDSSEEEILDNEHEEKDETIYTEYYR 77 (620)
Q Consensus 1 ~~~~v~wfyRped~~~~~~~~~d~~eLf~Sd~~~~v~~~~I~gkC~V~~~~~~~~i~~~~~~~~~~pd~Fy~~~~y~ 77 (620)
++|+|+|||||+||..+....+++||||+|++.+++++++|.|||.|.++++-.+.++......-.++.|++.+.|+
T Consensus 37 ~~~~v~WfyrPeEt~~~~~~~~~~~EvF~S~~~d~~~~~~I~gkc~V~~~~ey~~~~~~~~~~~~~~d~~~Ce~~yn 113 (121)
T cd04714 37 MVVRVKWYYRPEETKGGRKPNHGEKELFASDHQDENSVQTIEHKCYVLTFAEYERLARVKKKPQDGVDFYYCAGTYN 113 (121)
T ss_pred EEEEEEEEEcHHHccCcccccCCCCceEecCCcccccHHHhCcccEEEehhHheecccccCCCCcCCCEEEEeccCC
Confidence 37999999999999887766899999999999999999999999999988865443332201011367788888888
No 17
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.30 E-value=2.4e-12 Score=116.52 Aligned_cols=78 Identities=21% Similarity=0.311 Sum_probs=66.2
Q ss_pred CEEEEEEEeeccCCCCCCccccCCCeEEecCceeeeccccccceEEEEEeCCCCChhHhhhcCCCCCCeEEEEEEEecCC
Q psy12304 1 MKAHVQWLVRPNDTILGDKIQFDNSTLFLTNACESIDLSVIKKTVCVDFVTNDSSEEEILDNEHEEKDETIYTEYYRKTK 80 (620)
Q Consensus 1 ~~~~v~wfyRped~~~~~~~~~d~~eLf~Sd~~~~v~~~~I~gkC~V~~~~~~~~i~~~~~~~~~~pd~Fy~~~~y~~~~ 80 (620)
++|+|+||||||+|..+...++-.+|||+|++.+++++++|.|||.|+.+. +|.+......|+|++...|+ ..
T Consensus 68 ~~~~grWy~rPEET~~gr~~~~~~kEvFlS~~~d~~~~~~I~gkC~V~~~k------eY~k~e~~g~Dvy~Ce~~Yd-~~ 140 (148)
T cd04718 68 YWYAARWYTLPEETHMGRQPHNLRRELYLTNDFADIEMECILRHCSVKCPK------EFRDASNDGDDVFLCEYEYD-VH 140 (148)
T ss_pred eEEEEEEEeCchhccCccccccccceeeeccccccccHHHHhcccEEcCHH------HcccccCCCCceEEEEEEEh-hh
Confidence 479999999999999998888999999999999999999999999999665 55444444578999999998 66
Q ss_pred Cccee
Q psy12304 81 DKHFV 85 (620)
Q Consensus 81 ~~~~~ 85 (620)
.++|.
T Consensus 141 ~~~Fk 145 (148)
T cd04718 141 WQSFK 145 (148)
T ss_pred cCcee
Confidence 66654
No 18
>cd04760 BAH_Dnmt1_I BAH, or Bromo Adjacent Homology domain, first copy present in DNA (Cytosine-5)-methyltransferases from Bilateria, Dnmt1 and similar proteins. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the genome. These effects include transcriptional repression via inhibition of transcription factor binding, the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting, and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.29 E-value=5.3e-12 Score=111.88 Aligned_cols=71 Identities=31% Similarity=0.564 Sum_probs=59.2
Q ss_pred CEEEEEEEeeccCCCCCCccccCCCeEEecCceeeeccccccceEEEEEeCCC--------CC--hhHhhhcCCCCCCeE
Q psy12304 1 MKAHVQWLVRPNDTILGDKIQFDNSTLFLTNACESIDLSVIKKTVCVDFVTND--------SS--EEEILDNEHEEKDET 70 (620)
Q Consensus 1 ~~~~v~wfyRped~~~~~~~~~d~~eLf~Sd~~~~v~~~~I~gkC~V~~~~~~--------~~--i~~~~~~~~~~pd~F 70 (620)
.+|||||||||+||+++.. ++++|||+|++++++++++|.+||.|.+..+. .. ......+ ++.|
T Consensus 37 k~~h~rWf~Rg~dTVlG~~--~~~kEvFlsd~c~d~~l~~I~~Kv~V~~~~p~~~w~~~~g~~~~~~~~~dd----g~tf 110 (124)
T cd04760 37 KMFHAHWFCRGSDTVLGET--SDPLELFLVDECEDMALSSIHGKVNVIYKAPSENWSMEGGMDEEDEIFEDD----GKTF 110 (124)
T ss_pred cEEEEEEEEECCccccccc--CCCcEEEeecccCCcchHHheeeeEEEEeCCCcchhhhcCCCCccccccCC----CCeE
Confidence 3799999999999998875 99999999999999999999999999998754 11 1122222 5899
Q ss_pred EEEEEEe
Q psy12304 71 IYTEYYR 77 (620)
Q Consensus 71 y~~~~y~ 77 (620)
||.+-|+
T Consensus 111 fyq~~yd 117 (124)
T cd04760 111 FYQKWYD 117 (124)
T ss_pred EEEEeeC
Confidence 9999998
No 19
>cd04370 BAH BAH, or Bromo Adjacent Homology domain (also called ELM1 and BAM for Bromo Adjacent Motif). BAH domains have first been described as domains found in the polybromo protein and Yeast Rsc1/Rsc2 (Remodeling of the Structure of Chromatin). They also occur in mammalian DNA methyltransferases and the MTA1 subunits of histone deacetylase complexes. A BAH domain is also found in Yeast Sir3p and in the origin receptor complex protein 1 (Orc1p), where it was found to interact with the N-terminal lobe of the silence information regulator 1 protein (Sir1p), confirming the initial hypothesis that BAH plays a role in protein-protein interactions.
Probab=99.27 E-value=4.2e-12 Score=114.16 Aligned_cols=81 Identities=22% Similarity=0.275 Sum_probs=65.5
Q ss_pred CEEEEEEEeeccCCCCCCccccCCCeEEecCceeeeccccccceEEEEEeCCCCChh-HhhhcCCCCCCeEEEEEEEecC
Q psy12304 1 MKAHVQWLVRPNDTILGDKIQFDNSTLFLTNACESIDLSVIKKTVCVDFVTNDSSEE-EILDNEHEEKDETIYTEYYRKT 79 (620)
Q Consensus 1 ~~~~v~wfyRped~~~~~~~~~d~~eLf~Sd~~~~v~~~~I~gkC~V~~~~~~~~i~-~~~~~~~~~pd~Fy~~~~y~~~ 79 (620)
++++|+|||||+||..+....+++||||+|++.+++++++|.|||.|.+.++..... ..... .++.||++..|+ .
T Consensus 39 ~~~~v~wf~rp~e~~~~~~~~~~~~Elf~s~~~~~i~v~~I~gkc~V~~~~~~~~~~~~~~~~---~~~~f~~r~~yd-~ 114 (123)
T cd04370 39 KQVKVRWFYRPEETPKGLSPFALRRELFLSDHLDEIPVESIIGKCKVLFVSEFEGLKQRPNKI---DTDDFFCRLAYD-P 114 (123)
T ss_pred EEEEEEEEEchhHhccccccccccceeEEecCccccCHHHhccccEEEechHhhccccccccC---CCCeEEEEEEEC-c
Confidence 379999999999998776668899999999999999999999999999998653322 11112 378999999999 5
Q ss_pred CCccee
Q psy12304 80 KDKHFV 85 (620)
Q Consensus 80 ~~~~~~ 85 (620)
..++|.
T Consensus 115 ~~~~fk 120 (123)
T cd04370 115 TTKEFK 120 (123)
T ss_pred CcceEE
Confidence 555554
No 20
>cd04717 BAH_polybromo BAH, or Bromo Adjacent Homology domain, as present in polybromo and yeast RSC1/2. The human polybromo protein (BAF180) is a component of the SWI/SNF chromatin-remodeling complex PBAF. It is thought that polybromo participates in transcriptional regulation. Saccharomyces cerevisiae RSC1 and RSC2 are part of the 15-subunit nucleosome remodeling RSC complex. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.21 E-value=1.3e-11 Score=110.99 Aligned_cols=80 Identities=19% Similarity=0.220 Sum_probs=60.6
Q ss_pred EEEEEEEeeccCCCCCCccccCCCeEEecCceeeeccccccceEEEEEeCCCCChhHhhhcCCCCCCeEEEEEEEecCCC
Q psy12304 2 KAHVQWLVRPNDTILGDKIQFDNSTLFLTNACESIDLSVIKKTVCVDFVTNDSSEEEILDNEHEEKDETIYTEYYRKTKD 81 (620)
Q Consensus 2 ~~~v~wfyRped~~~~~~~~~d~~eLf~Sd~~~~v~~~~I~gkC~V~~~~~~~~i~~~~~~~~~~pd~Fy~~~~y~~~~~ 81 (620)
+|+|+|||||+||..+......+||||+|++.+++|+++|.|||.|..+++-.+.++-... ..|.|++++.|+ ...
T Consensus 38 ~~~~~Wf~rP~et~~~~~~~~~~~Evfls~~~d~~~~~~I~~kc~Vl~~~~y~~~~p~~~~---~~dvy~ce~~y~-~~~ 113 (121)
T cd04717 38 FFFGCWFYRPEETFHEPTRKFYKNEVFKSPLYETVPVEEIVGKCAVMDVKDYIKGRPTEIS---EEDVYVCESRYN-ESA 113 (121)
T ss_pred EEEEEEEeChHHccCCCccccccCceEEcCccccccHHHhcCeeEEEehHHHhcCCCCCCC---CCCEEEEeEEEC-ccc
Confidence 7899999999999766655678899999999999999999999999987744222211111 135577889998 555
Q ss_pred ccee
Q psy12304 82 KHFV 85 (620)
Q Consensus 82 ~~~~ 85 (620)
++|.
T Consensus 114 ~~~~ 117 (121)
T cd04717 114 KSFK 117 (121)
T ss_pred ccEe
Confidence 5554
No 21
>cd04721 BAH_plant_1 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=98.86 E-value=3.6e-09 Score=95.91 Aligned_cols=72 Identities=11% Similarity=0.101 Sum_probs=57.0
Q ss_pred EEEEEEEeeccCCCCCCcc-ccCCCeEEecCceeeeccccccceEEEEEeCCCCChhHhhhcCCC-----CCCeEEEEEE
Q psy12304 2 KAHVQWLVRPNDTILGDKI-QFDNSTLFLTNACESIDLSVIKKTVCVDFVTNDSSEEEILDNEHE-----EKDETIYTEY 75 (620)
Q Consensus 2 ~~~v~wfyRped~~~~~~~-~~d~~eLf~Sd~~~~v~~~~I~gkC~V~~~~~~~~i~~~~~~~~~-----~pd~Fy~~~~ 75 (620)
+++|+|||||+++..+... .+-+||||+|++.+++++++|.|||.|...+ +|.+.-.. ..+.|+|+..
T Consensus 40 ~v~v~WF~~p~E~~~~~~~~~~~~~EvFlS~~~d~i~~~~I~gk~~Vls~~------~y~k~~~~~~~~~~~~~f~C~~~ 113 (130)
T cd04721 40 MVKVRWFHTTDEVGAALSPDSVNPREIFLSPNLQVISVECIDGLATVLTRE------HYEKFQSVPKNSSELQAYFCYRQ 113 (130)
T ss_pred EEEEEEecCHHHhccccCCCCCCCCeEEEcCCccccchHHeeeeeEECCHH------HHhhhhccccCccccccEEEEEE
Confidence 6899999999999876554 4789999999999999999999999999654 33332211 2458999999
Q ss_pred EecC
Q psy12304 76 YRKT 79 (620)
Q Consensus 76 y~~~ 79 (620)
|+..
T Consensus 114 ~d~~ 117 (130)
T cd04721 114 IDNN 117 (130)
T ss_pred ecCC
Confidence 9843
No 22
>cd04715 BAH_Orc1p_like BAH, or Bromo Adjacent Homology domain, as present in the Schizosaccharomyces pombe homolog of Saccharomyces cerevisiae Orc1p and similar proteins. Orc1 is part of the Yeast Sir1-origin recognition complex, the Orc1p BAH doman functions in epigenetic silencing. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=98.83 E-value=2.4e-09 Score=100.04 Aligned_cols=53 Identities=23% Similarity=0.260 Sum_probs=45.0
Q ss_pred CEEEEEEEeeccCCCCCCcc--ccCCCeEEecCce-----eeeccccccceEEEEEeCCC
Q psy12304 1 MKAHVQWLVRPNDTILGDKI--QFDNSTLFLTNAC-----ESIDLSVIKKTVCVDFVTND 53 (620)
Q Consensus 1 ~~~~v~wfyRped~~~~~~~--~~d~~eLf~Sd~~-----~~v~~~~I~gkC~V~~~~~~ 53 (620)
.+++|+|||||+|+..+... .+.+||||+|++. +++|+++|.|||.|..+++.
T Consensus 63 ~~~~v~WfyRp~E~~~~~~~~~~~~~nEvFlS~~~d~~~~~~n~l~sI~gKC~Vl~~~ey 122 (159)
T cd04715 63 KKVKVIWFFRPSEIRMELKGEPKRHINEVFLACGRGEGLANINLLESIIGKCNVVCISED 122 (159)
T ss_pred eEEEEEeeeCHHHhccccccCcccCCCcEEEecCcCccccccCcHHHccceeEEEEehHh
Confidence 37999999999999865443 5779999999875 67899999999999998855
No 23
>cd04719 BAH_Orc1p_animal BAH, or Bromo Adjacent Homology domain, as present in animal homologs of Saccharomyces cerevisiae Orc1p. Orc1 is part of the Yeast Sir1-origin recognition complex. The Orc1p BAH doman functions in epigenetic silencing. In vertebrates, a similar ORC protein complex exists, which has been shown essential for DNA replication in Xenopus laevis. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=98.82 E-value=6.4e-09 Score=93.37 Aligned_cols=73 Identities=21% Similarity=0.319 Sum_probs=57.8
Q ss_pred EEEEEEEeeccCCCCCCc---c-ccCCCeEEecCce---eeeccccccceEEEEEeCCCCChhHhhhcCCCCCCeEEEEE
Q psy12304 2 KAHVQWLVRPNDTILGDK---I-QFDNSTLFLTNAC---ESIDLSVIKKTVCVDFVTNDSSEEEILDNEHEEKDETIYTE 74 (620)
Q Consensus 2 ~~~v~wfyRped~~~~~~---~-~~d~~eLf~Sd~~---~~v~~~~I~gkC~V~~~~~~~~i~~~~~~~~~~pd~Fy~~~ 74 (620)
.++|||||||++...... + ..+++|||+|++. +.+++++|.|+|.|+.+.+.+++++.... ..+.||++.
T Consensus 40 ~~~VqWy~R~~Ev~~~~~~~~~~~~~~~EvF~~~~~~~~~~i~~etI~gkc~V~~~~~y~~l~~~~~~---~~~~~F~r~ 116 (128)
T cd04719 40 RAIVQWFSRPSEVPKNKRKLLGREPHSQEVFFYSRSSCDNDIDAETIIGKVRVEPVEPKTDLPETKKK---TGGPLFVKR 116 (128)
T ss_pred eEEEEcccChHHccccchhhccCCCCCcEEEEecCccccCcEeHHHcccEEEEEEcCCccchhhhccc---cCceEEEEE
Confidence 578999999999853331 1 5679999999987 48999999999999999988776653222 368999988
Q ss_pred EEe
Q psy12304 75 YYR 77 (620)
Q Consensus 75 ~y~ 77 (620)
.++
T Consensus 117 ~~~ 119 (128)
T cd04719 117 YWD 119 (128)
T ss_pred Eec
Confidence 776
No 24
>cd04720 BAH_Orc1p_Yeast BAH, or Bromo Adjacent Homology domain, as present in Orc1p, which again is part of the Saccharomyces cerevisiae Sir1-origin recognition complex, and as present in Sir3p. The Orc1p BAH doman functions in epigenetic silencing. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=98.82 E-value=6.5e-09 Score=99.48 Aligned_cols=78 Identities=22% Similarity=0.244 Sum_probs=59.9
Q ss_pred CEEEEEEEeeccCCCCCCcc-ccC--------CCeEEecCceeeeccccccceEEEEEeCCCCChhHhhhcCCC---CCC
Q psy12304 1 MKAHVQWLVRPNDTILGDKI-QFD--------NSTLFLTNACESIDLSVIKKTVCVDFVTNDSSEEEILDNEHE---EKD 68 (620)
Q Consensus 1 ~~~~v~wfyRped~~~~~~~-~~d--------~~eLf~Sd~~~~v~~~~I~gkC~V~~~~~~~~i~~~~~~~~~---~pd 68 (620)
+.+.|+|||||+|....+.+ .++ +||||+|.+.+.+++.+|.+||.|+-.. +|.+.... ...
T Consensus 86 v~i~v~Wy~r~~Ei~~~~~~~~~~~~~~~~~~~nElflT~~~d~i~l~~Ii~k~~Vls~~------ef~~~~~~~~~~~~ 159 (179)
T cd04720 86 VELWVMWFLRWFEINPARYYKQFDPEFRSESNKNELYLTAELSEIKLKDIIDKANVLSES------EFNDLSTDDKNGER 159 (179)
T ss_pred EEEEEEEcCCHHHcccccccccccchhcccCCCceEEEecccceEEhhheeeeEEEecHH------HhhhhcccccCCCc
Confidence 46899999999999654443 333 7999999999999999999999999443 44433211 367
Q ss_pred eEEEEEEEecCCCccee
Q psy12304 69 ETIYTEYYRKTKDKHFV 85 (620)
Q Consensus 69 ~Fy~~~~y~~~~~~~~~ 85 (620)
+|||+..|+ ...+.|.
T Consensus 160 ~F~cR~~~d-~~~~~F~ 175 (179)
T cd04720 160 TFFCRYACE-PDGEEFV 175 (179)
T ss_pred eEEEEEEEe-CCCCeEc
Confidence 999999998 5555564
No 25
>KOG1886|consensus
Probab=98.65 E-value=9.7e-09 Score=108.88 Aligned_cols=73 Identities=22% Similarity=0.278 Sum_probs=62.1
Q ss_pred CEEEEEEEeeccCCCCCCcc---ccCCCeEEecCceeeeccccccceEEEEEeCCCCChhHhhhcCCCCCCeEEEEEEEe
Q psy12304 1 MKAHVQWLVRPNDTILGDKI---QFDNSTLFLTNACESIDLSVIKKTVCVDFVTNDSSEEEILDNEHEEKDETIYTEYYR 77 (620)
Q Consensus 1 ~~~~v~wfyRped~~~~~~~---~~d~~eLf~Sd~~~~v~~~~I~gkC~V~~~~~~~~i~~~~~~~~~~pd~Fy~~~~y~ 77 (620)
++++||||||||++..+... ..++|+||||.|.|.++.+.|.++|.|+++.....+..... -.+|++++.|+
T Consensus 85 ~k~ev~W~YrPee~~~~~~~~~~a~~~relF~SfH~De~~A~ti~~rC~V~fvp~~kqlp~~~~-----~~~f~~r~vYd 159 (464)
T KOG1886|consen 85 VKVEVQWFYRPEESEGGGSGKWGAKQPRELFLSFHEDEAFAETILHRCKVHFVPAYKQLPNRVG-----HESFICRRVYD 159 (464)
T ss_pred cceecccccCCCccCCCCCCCcccCCCccccccccccchhhhhhcccceeeeccccccccccCC-----CCCcccccccc
Confidence 57899999999999876666 78899999999999999999999999999997755444332 46999999998
Q ss_pred c
Q psy12304 78 K 78 (620)
Q Consensus 78 ~ 78 (620)
.
T Consensus 160 ~ 160 (464)
T KOG1886|consen 160 A 160 (464)
T ss_pred c
Confidence 3
No 26
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=97.67 E-value=0.00049 Score=80.10 Aligned_cols=150 Identities=17% Similarity=0.175 Sum_probs=99.1
Q ss_pred cceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcC-------CCcccccchHHHHHHhhcccccccCcCCC
Q psy12304 118 LKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQ-------ECSVIQDDCNLVLKSLLKGHTQHKGVSLP 190 (620)
Q Consensus 118 l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p-------~~~~~~~di~~~~~~~~~~~~~~~~~~~p 190 (620)
-++||||||.|++++.+...|. ..+.++|+++.|++.-+.|+. ...++.+|+.+.++. .
T Consensus 540 ~rVLDlf~gtG~~sl~aa~~Ga-~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~------------~- 605 (702)
T PRK11783 540 KDFLNLFAYTGTASVHAALGGA-KSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKE------------A- 605 (702)
T ss_pred CeEEEcCCCCCHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHH------------c-
Confidence 4799999999999999999887 668999999999999888862 244567788766432 1
Q ss_pred CCCccceEEecCCCCccccccccchhhhcccccchHHHHHH-HhhhcCCcE-EEEccccccccccchhHHHHHHHHHHcC
Q psy12304 191 QKHEVDLIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLS-FCDLFQPKY-IILENVTGLVHFNKNEILQCIFHCLLKM 268 (620)
Q Consensus 191 ~~~~vD~i~gGpPCQ~fS~~~~~~~~~~~d~r~~L~~~~~~-~i~~~~P~~-~v~ENV~gl~~~~~~~~~~~i~~~l~~~ 268 (620)
.+.+|+|+.-||.=.-|.... ...+ . ..-+..+++ ..+.++|.- +++++-..-+ ......+.+.
T Consensus 606 -~~~fDlIilDPP~f~~~~~~~---~~~~-~-~~~y~~l~~~a~~lL~~gG~l~~~~~~~~~--------~~~~~~~~~~ 671 (702)
T PRK11783 606 -REQFDLIFIDPPTFSNSKRME---DSFD-V-QRDHVALIKDAKRLLRPGGTLYFSNNKRGF--------KMDEEGLAKL 671 (702)
T ss_pred -CCCcCEEEECCCCCCCCCccc---hhhh-H-HHHHHHHHHHHHHHcCCCCEEEEEeCCccC--------ChhHHHHHhC
Confidence 236999999999755432210 0000 0 001222222 244567754 4466544322 2236677788
Q ss_pred CCEEEEE--EEecCCCCCcccccEEEEEE
Q psy12304 269 NYQVTFD--VLQSGNYGVAQSRNRVVILA 295 (620)
Q Consensus 269 GY~v~~~--~l~A~~yGvPQ~R~R~fivg 295 (620)
||.++.. .-.+.||-++.+.+|.|.|.
T Consensus 672 g~~~~~i~~~~~~~Dhp~~~~~~~~~~~~ 700 (702)
T PRK11783 672 GLKAEEITAKTLPPDFARNPKIHNCWLIT 700 (702)
T ss_pred CCeEEEEecCCCCCCCCCCcccceeEEEe
Confidence 9987643 46677888888889998876
No 27
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=97.62 E-value=0.00024 Score=66.90 Aligned_cols=79 Identities=22% Similarity=0.303 Sum_probs=52.2
Q ss_pred ceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcC------CCcccccchHHHHHHhhcccccccCcCCCCC
Q psy12304 119 KCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQ------ECSVIQDDCNLVLKSLLKGHTQHKGVSLPQK 192 (620)
Q Consensus 119 ~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p------~~~~~~~di~~~~~~~~~~~~~~~~~~~p~~ 192 (620)
+++|+|||+||=++.|...+ ..+.|+|+|+.-++..++|.. +...+++|+.+++.. +...
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~--~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~------------~~~~ 67 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTF--DRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKR------------LKSN 67 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT---EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGG------------B---
T ss_pred EEEEeccCcCHHHHHHHHhC--CeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhh------------cccc
Confidence 58999999999999999985 469999999999999998841 234566787765321 1111
Q ss_pred CccceEEecCCCCcccccc
Q psy12304 193 HEVDLIVAGPPCQGFSQLN 211 (620)
Q Consensus 193 ~~vD~i~gGpPCQ~fS~~~ 211 (620)
.-+|+|..+||--|-|-..
T Consensus 68 ~~~D~vFlSPPWGGp~Y~~ 86 (163)
T PF09445_consen 68 KIFDVVFLSPPWGGPSYSK 86 (163)
T ss_dssp ---SEEEE---BSSGGGGG
T ss_pred ccccEEEECCCCCCccccc
Confidence 1169999999998877654
No 28
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.62 E-value=8.2e-05 Score=70.67 Aligned_cols=115 Identities=18% Similarity=0.250 Sum_probs=77.4
Q ss_pred ceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcC----CCcccccchHHHHHHhhcccccccCcCCCCCCc
Q psy12304 119 KCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQ----ECSVIQDDCNLVLKSLLKGHTQHKGVSLPQKHE 194 (620)
Q Consensus 119 ~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p----~~~~~~~di~~~~~~~~~~~~~~~~~~~p~~~~ 194 (620)
+++||-||+|-|++|....|. ..+.++|+|+.|.++.+.|-. +..+++.|+.++ .+.
T Consensus 48 ~V~DlG~GTG~La~ga~~lGa-~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~------------------~~~ 108 (198)
T COG2263 48 TVLDLGAGTGILAIGAALLGA-SRVLAVDIDPEALEIARANAEELLGDVEFVVADVSDF------------------RGK 108 (198)
T ss_pred EEEEcCCCcCHHHHHHHhcCC-cEEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhc------------------CCc
Confidence 699999999999999999998 789999999999999999987 344555565443 247
Q ss_pred cceEEecCCCCccccccccchhhhcccccchHHHHHHHhhhcCCcEEEEccccccccccchhHHHHHHHHHHcCCCEEEE
Q psy12304 195 VDLIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLSFCDLFQPKYIILENVTGLVHFNKNEILQCIFHCLLKMNYQVTF 274 (620)
Q Consensus 195 vD~i~gGpPCQ~fS~~~~~~~~~~~d~r~~L~~~~~~~i~~~~P~~~v~ENV~gl~~~~~~~~~~~i~~~l~~~GY~v~~ 274 (620)
+|.++.-||= |-+.+. .| ...+...+++- +=|-.+ .+....+.+.+...++|+++..
T Consensus 109 ~dtvimNPPF------G~~~rh--aD--r~Fl~~Ale~s----------~vVYsi---H~a~~~~f~~~~~~~~G~~v~~ 165 (198)
T COG2263 109 FDTVIMNPPF------GSQRRH--AD--RPFLLKALEIS----------DVVYSI---HKAGSRDFVEKFAADLGGTVTH 165 (198)
T ss_pred cceEEECCCC------cccccc--CC--HHHHHHHHHhh----------heEEEe---eccccHHHHHHHHHhcCCeEEE
Confidence 8899999993 221111 11 11333344433 112222 2223456667778889998754
Q ss_pred E
Q psy12304 275 D 275 (620)
Q Consensus 275 ~ 275 (620)
.
T Consensus 166 ~ 166 (198)
T COG2263 166 I 166 (198)
T ss_pred E
Confidence 3
No 29
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=97.61 E-value=0.00019 Score=63.42 Aligned_cols=76 Identities=24% Similarity=0.293 Sum_probs=57.8
Q ss_pred cceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcCCC------cccccchHHHHHHhhcccccccCcCCCC
Q psy12304 118 LKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQEC------SVIQDDCNLVLKSLLKGHTQHKGVSLPQ 191 (620)
Q Consensus 118 l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p~~------~~~~~di~~~~~~~~~~~~~~~~~~~p~ 191 (620)
.+++|+|||.|.+.+.+...| ...+.++|+|+.+++.-+.|++.. .++++|+.++... + .
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~------------~-~ 67 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEP------------L-P 67 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHT------------C-T
T ss_pred CEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhh------------c-c
Confidence 479999999999999999999 357999999999999999987643 4567787766321 1 2
Q ss_pred CCccceEEecCCCCcc
Q psy12304 192 KHEVDLIVAGPPCQGF 207 (620)
Q Consensus 192 ~~~vD~i~gGpPCQ~f 207 (620)
.+.+|+|++.||.-+.
T Consensus 68 ~~~~D~Iv~npP~~~~ 83 (117)
T PF13659_consen 68 DGKFDLIVTNPPYGPR 83 (117)
T ss_dssp TT-EEEEEE--STTSB
T ss_pred CceeEEEEECCCCccc
Confidence 3579999999998544
No 30
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=97.52 E-value=0.00099 Score=73.30 Aligned_cols=120 Identities=18% Similarity=0.219 Sum_probs=80.7
Q ss_pred cceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhc-----CCCcccccchHHHHHHhhcccccccCcCCCCC
Q psy12304 118 LKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANF-----QECSVIQDDCNLVLKSLLKGHTQHKGVSLPQK 192 (620)
Q Consensus 118 l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~-----p~~~~~~~di~~~~~~~~~~~~~~~~~~~p~~ 192 (620)
-+++|||||.|.+++-+...+. -++++|+++.|++.-+.|. .+..++.+|+.+.+.... . ..
T Consensus 294 ~~vLDl~cG~G~~sl~la~~~~--~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~----------~-~~ 360 (431)
T TIGR00479 294 ELVVDAYCGVGTFTLPLAKQAK--SVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQP----------W-AG 360 (431)
T ss_pred CEEEEcCCCcCHHHHHHHHhCC--EEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHH----------h-cC
Confidence 4799999999999999987653 5899999999999888874 345667788876543210 0 11
Q ss_pred CccceEEecCCCCccccccccchhhhcccccchHHHHHHHhhhcCCcEEEEccccccccccchhHHHHHHHHHHcCCCEE
Q psy12304 193 HEVDLIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLSFCDLFQPKYIILENVTGLVHFNKNEILQCIFHCLLKMNYQV 272 (620)
Q Consensus 193 ~~vD~i~gGpPCQ~fS~~~~~~~~~~~d~r~~L~~~~~~~i~~~~P~~~v~ENV~gl~~~~~~~~~~~i~~~l~~~GY~v 272 (620)
+.+|+|+..||.-| +..++++.+..++|+-++.- +.+ -..+..-+..|.+.||.+
T Consensus 361 ~~~D~vi~dPPr~G------------------~~~~~l~~l~~l~~~~ivyv------sc~-p~tlard~~~l~~~gy~~ 415 (431)
T TIGR00479 361 QIPDVLLLDPPRKG------------------CAAEVLRTIIELKPERIVYV------SCN-PATLARDLEFLCKEGYGI 415 (431)
T ss_pred CCCCEEEECcCCCC------------------CCHHHHHHHHhcCCCEEEEE------cCC-HHHHHHHHHHHHHCCeeE
Confidence 35799999999422 22344555666788755432 111 233555566777889987
Q ss_pred EEE
Q psy12304 273 TFD 275 (620)
Q Consensus 273 ~~~ 275 (620)
...
T Consensus 416 ~~~ 418 (431)
T TIGR00479 416 TWV 418 (431)
T ss_pred EEE
Confidence 543
No 31
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=97.52 E-value=0.00086 Score=72.27 Aligned_cols=69 Identities=23% Similarity=0.310 Sum_probs=53.4
Q ss_pred ceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcC-----CCcccccchHHHHHHhhcccccccCcCCCCCC
Q psy12304 119 KCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQ-----ECSVIQDDCNLVLKSLLKGHTQHKGVSLPQKH 193 (620)
Q Consensus 119 ~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p-----~~~~~~~di~~~~~~~~~~~~~~~~~~~p~~~ 193 (620)
+++|||||.|.+++.+...|. .++++|+++.|++.-+.|.. +..++++|+.+++.. ..+
T Consensus 236 ~vLDL~cG~G~~~l~la~~~~--~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~--------------~~~ 299 (374)
T TIGR02085 236 QMWDLFCGVGGFGLHCAGPDT--QLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATA--------------QMS 299 (374)
T ss_pred EEEEccCCccHHHHHHhhcCC--eEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHh--------------cCC
Confidence 799999999999999987664 58999999999999888752 344566777665321 012
Q ss_pred ccceEEecCC
Q psy12304 194 EVDLIVAGPP 203 (620)
Q Consensus 194 ~vD~i~gGpP 203 (620)
++|+|+.-||
T Consensus 300 ~~D~vi~DPP 309 (374)
T TIGR02085 300 APELVLVNPP 309 (374)
T ss_pred CCCEEEECCC
Confidence 4799999999
No 32
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=97.52 E-value=0.00012 Score=70.63 Aligned_cols=76 Identities=30% Similarity=0.406 Sum_probs=51.4
Q ss_pred CCcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcCC------CcccccchHHHHHHhhcccccccCcCC
Q psy12304 116 TPLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQE------CSVIQDDCNLVLKSLLKGHTQHKGVSL 189 (620)
Q Consensus 116 ~~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p~------~~~~~~di~~~~~~~~~~~~~~~~~~~ 189 (620)
...++||||||.|.+++=.-.-|. +-+++||.++.|+++.+.|... ..+++.|+...+.....
T Consensus 42 ~g~~vLDLFaGSGalGlEALSRGA-~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~---------- 110 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSRGA-KSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAK---------- 110 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHH----------
T ss_pred CCCeEEEcCCccCccHHHHHhcCC-CeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcc----------
Confidence 346899999999998876666687 6799999999999999999642 34566776655443211
Q ss_pred CCCCccceEEecCC
Q psy12304 190 PQKHEVDLIVAGPP 203 (620)
Q Consensus 190 p~~~~vD~i~gGpP 203 (620)
....+|+|..-||
T Consensus 111 -~~~~fDiIflDPP 123 (183)
T PF03602_consen 111 -KGEKFDIIFLDPP 123 (183)
T ss_dssp -CTS-EEEEEE--S
T ss_pred -cCCCceEEEECCC
Confidence 1237899999999
No 33
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=97.52 E-value=0.00055 Score=67.01 Aligned_cols=71 Identities=21% Similarity=0.339 Sum_probs=52.4
Q ss_pred cceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcC-----CCcccccchHHHHHHhhcccccccCcCCCCC
Q psy12304 118 LKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQ-----ECSVIQDDCNLVLKSLLKGHTQHKGVSLPQK 192 (620)
Q Consensus 118 l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p-----~~~~~~~di~~~~~~~~~~~~~~~~~~~p~~ 192 (620)
-+++|||||+|.+++.+...|. .-+.++|+++.|++..+.|.. +..++++|+.+.+.. ..
T Consensus 55 ~~vLDl~~GsG~l~l~~lsr~a-~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~--------------~~ 119 (199)
T PRK10909 55 ARCLDCFAGSGALGLEALSRYA-AGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQ--------------PG 119 (199)
T ss_pred CEEEEcCCCccHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhh--------------cC
Confidence 4799999999999986544465 468899999999998888742 344566777554311 11
Q ss_pred CccceEEecCC
Q psy12304 193 HEVDLIVAGPP 203 (620)
Q Consensus 193 ~~vD~i~gGpP 203 (620)
+.+|+|+.-||
T Consensus 120 ~~fDlV~~DPP 130 (199)
T PRK10909 120 TPHNVVFVDPP 130 (199)
T ss_pred CCceEEEECCC
Confidence 25899999999
No 34
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=97.46 E-value=0.00068 Score=68.95 Aligned_cols=137 Identities=15% Similarity=0.207 Sum_probs=82.3
Q ss_pred CcceecccccccHHHHHHHhc--CCCccEEEEcCchhHHHHHHHhcCC--CcccccchHHHHHHhhcccccccCcCCCCC
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQA--GVAKPCWSVELERSEAASYDANFQE--CSVIQDDCNLVLKSLLKGHTQHKGVSLPQK 192 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~a--G~~~~~~a~e~d~~a~~ty~~N~p~--~~~~~~di~~~~~~~~~~~~~~~~~~~p~~ 192 (620)
..+++|||||.|.+++.+... |. .++++|+++.|++.-+.|... ..++++|+.+.+. ... .
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~--~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~-----------~~~--~ 151 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGI--ELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALP-----------TAL--R 151 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCC--EEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcc-----------hhc--C
Confidence 357999999999999988753 33 478999999999999888532 2345566543211 011 2
Q ss_pred CccceEEecCCCCccccccccchhh-hcccccc---------hHHHHHHH-hhhcCCcE-EEEccccccccccchhHHHH
Q psy12304 193 HEVDLIVAGPPCQGFSQLNRARELE-KSKLKNG---------LVFTFLSF-CDLFQPKY-IILENVTGLVHFNKNEILQC 260 (620)
Q Consensus 193 ~~vD~i~gGpPCQ~fS~~~~~~~~~-~~d~r~~---------L~~~~~~~-i~~~~P~~-~v~ENV~gl~~~~~~~~~~~ 260 (620)
+.+|+|+..|||.+.+...+..... ..+++.. .+..+++- -+.++|.- ++||--. .-...
T Consensus 152 ~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~--------~~~~~ 223 (251)
T TIGR03704 152 GRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSE--------RQAPL 223 (251)
T ss_pred CCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc--------chHHH
Confidence 4699999999999876543311110 0111111 12333322 24457754 4455211 12456
Q ss_pred HHHHHHcCCCEEEEEE
Q psy12304 261 IFHCLLKMNYQVTFDV 276 (620)
Q Consensus 261 i~~~l~~~GY~v~~~~ 276 (620)
++..|.+.|+......
T Consensus 224 v~~~l~~~g~~~~~~~ 239 (251)
T TIGR03704 224 AVEAFARAGLIARVAS 239 (251)
T ss_pred HHHHHHHCCCCceeeE
Confidence 7778888888766544
No 35
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=97.42 E-value=0.00032 Score=68.17 Aligned_cols=74 Identities=27% Similarity=0.369 Sum_probs=55.4
Q ss_pred cceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcC------CCcccccchHHHHHHhhcccccccCcCCCC
Q psy12304 118 LKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQ------ECSVIQDDCNLVLKSLLKGHTQHKGVSLPQ 191 (620)
Q Consensus 118 l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p------~~~~~~~di~~~~~~~~~~~~~~~~~~~p~ 191 (620)
-+++|||||.|.+++-+...|. ..+.++|+++.|++..+.|.. +..++++|+.+.++.... .
T Consensus 51 ~~vLDLfaGsG~lglea~srga-~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~-----------~ 118 (189)
T TIGR00095 51 AHLLDVFAGSGLLGEEALSRGA-KVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAK-----------K 118 (189)
T ss_pred CEEEEecCCCcHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhc-----------c
Confidence 4799999999999999999897 679999999999999988852 235667777554432110 0
Q ss_pred CCccceEEecCC
Q psy12304 192 KHEVDLIVAGPP 203 (620)
Q Consensus 192 ~~~vD~i~gGpP 203 (620)
....|+|+.-||
T Consensus 119 ~~~~dvv~~DPP 130 (189)
T TIGR00095 119 PTFDNVIYLDPP 130 (189)
T ss_pred CCCceEEEECcC
Confidence 113689999998
No 36
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=97.31 E-value=0.0015 Score=68.64 Aligned_cols=123 Identities=18% Similarity=0.156 Sum_probs=85.7
Q ss_pred CcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcC-----C-CcccccchHHHHHHhhcccccccCcCCC
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQ-----E-CSVIQDDCNLVLKSLLKGHTQHKGVSLP 190 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p-----~-~~~~~~di~~~~~~~~~~~~~~~~~~~p 190 (620)
.-+++|+|||.|-+|+-+...|-.+ ++|+|+|++|++.++.|.- + ...+++|+.++..
T Consensus 189 GE~V~DmFAGVGpfsi~~Ak~g~~~-V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~--------------- 252 (341)
T COG2520 189 GETVLDMFAGVGPFSIPIAKKGRPK-VYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAP--------------- 252 (341)
T ss_pred CCEEEEccCCcccchhhhhhcCCce-EEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhh---------------
Confidence 3479999999999999999999743 9999999999999998852 1 3456788877632
Q ss_pred CCCccceEEecCCCCccccccccchhhhcccccchHHHHHHHhhhcCCcEEEEccccccccccchhHHHHHHHHHHcCCC
Q psy12304 191 QKHEVDLIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLSFCDLFQPKYIILENVTGLVHFNKNEILQCIFHCLLKMNY 270 (620)
Q Consensus 191 ~~~~vD~i~gGpPCQ~fS~~~~~~~~~~~d~r~~L~~~~~~~i~~~~P~~~v~ENV~gl~~~~~~~~~~~i~~~l~~~GY 270 (620)
..+.+|=|+.|-|= . . ...+...++.++. ..-.-+-|||+.-.... ..++.+......+||
T Consensus 253 ~~~~aDrIim~~p~-----------~-a----~~fl~~A~~~~k~-~g~iHyy~~~~e~~~~~--~~~~~i~~~~~~~~~ 313 (341)
T COG2520 253 ELGVADRIIMGLPK-----------S-A----HEFLPLALELLKD-GGIIHYYEFVPEDDIEE--RPEKRIKSAARKGGY 313 (341)
T ss_pred ccccCCEEEeCCCC-----------c-c----hhhHHHHHHHhhc-CcEEEEEeccchhhccc--chHHHHHHHHhhccC
Confidence 22578988888872 0 0 1133444555555 56666778887543211 256777777788899
Q ss_pred EEEE
Q psy12304 271 QVTF 274 (620)
Q Consensus 271 ~v~~ 274 (620)
++..
T Consensus 314 ~~~v 317 (341)
T COG2520 314 KVEV 317 (341)
T ss_pred cceE
Confidence 7643
No 37
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=97.26 E-value=0.0023 Score=67.37 Aligned_cols=73 Identities=22% Similarity=0.317 Sum_probs=55.9
Q ss_pred cceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhc-----CCCcccccchHHHHHHhhcccccccCcCCCCC
Q psy12304 118 LKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANF-----QECSVIQDDCNLVLKSLLKGHTQHKGVSLPQK 192 (620)
Q Consensus 118 l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~-----p~~~~~~~di~~~~~~~~~~~~~~~~~~~p~~ 192 (620)
-+++|||||.|.+++-+...|. -+.++|+++.|++.-+.|. .+..++++|+.++... ..
T Consensus 175 ~~VLDl~cG~G~~sl~la~~~~--~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~--------------~~ 238 (315)
T PRK03522 175 RSMWDLFCGVGGFGLHCATPGM--QLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATA--------------QG 238 (315)
T ss_pred CEEEEccCCCCHHHHHHHhcCC--EEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHh--------------cC
Confidence 4799999999999999998774 5899999999999888774 2345667787665311 11
Q ss_pred CccceEEecCCCCc
Q psy12304 193 HEVDLIVAGPPCQG 206 (620)
Q Consensus 193 ~~vD~i~gGpPCQ~ 206 (620)
+.+|+|+.-||+.|
T Consensus 239 ~~~D~Vv~dPPr~G 252 (315)
T PRK03522 239 EVPDLVLVNPPRRG 252 (315)
T ss_pred CCCeEEEECCCCCC
Confidence 25899999999543
No 38
>KOG3420|consensus
Probab=97.26 E-value=0.00026 Score=64.03 Aligned_cols=72 Identities=22% Similarity=0.242 Sum_probs=56.2
Q ss_pred CCcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcCCCcc----cccchHHHHHHhhcccccccCcCCCC
Q psy12304 116 TPLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQECSV----IQDDCNLVLKSLLKGHTQHKGVSLPQ 191 (620)
Q Consensus 116 ~~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p~~~~----~~~di~~~~~~~~~~~~~~~~~~~p~ 191 (620)
...+++||.||||-++.|+..-+- +.+.++|||+.|.+++..|--+.++ .+.||.++ .+.
T Consensus 48 Egkkl~DLgcgcGmLs~a~sm~~~-e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildl---------------e~~ 111 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLSIAFSMPKN-ESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDL---------------ELK 111 (185)
T ss_pred cCcchhhhcCchhhhHHHhhcCCC-ceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccch---------------hcc
Confidence 445789999999999999999997 8999999999999999999754432 23333222 234
Q ss_pred CCccceEEecCC
Q psy12304 192 KHEVDLIVAGPP 203 (620)
Q Consensus 192 ~~~vD~i~gGpP 203 (620)
.|-+|..+.-||
T Consensus 112 ~g~fDtaviNpp 123 (185)
T KOG3420|consen 112 GGIFDTAVINPP 123 (185)
T ss_pred CCeEeeEEecCC
Confidence 467899999988
No 39
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=97.23 E-value=0.00084 Score=64.31 Aligned_cols=78 Identities=28% Similarity=0.404 Sum_probs=57.2
Q ss_pred CCCcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcC------CCcccccchHHHHHHhhcccccccCcC
Q psy12304 115 DTPLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQ------ECSVIQDDCNLVLKSLLKGHTQHKGVS 188 (620)
Q Consensus 115 ~~~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p------~~~~~~~di~~~~~~~~~~~~~~~~~~ 188 (620)
...-++||||||.|++++=.-.-|. .-+..+|.|..|+.+.+.|.. .+.++..|....++.
T Consensus 42 i~g~~~LDlFAGSGaLGlEAlSRGA-~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~------------ 108 (187)
T COG0742 42 IEGARVLDLFAGSGALGLEALSRGA-ARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQ------------ 108 (187)
T ss_pred cCCCEEEEecCCccHhHHHHHhCCC-ceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHh------------
Confidence 3456899999999988765555687 678899999999999999953 344556666544332
Q ss_pred CCCCCccceEEecCCCC
Q psy12304 189 LPQKHEVDLIVAGPPCQ 205 (620)
Q Consensus 189 ~p~~~~vD~i~gGpPCQ 205 (620)
......+|+|..-||=.
T Consensus 109 ~~~~~~FDlVflDPPy~ 125 (187)
T COG0742 109 LGTREPFDLVFLDPPYA 125 (187)
T ss_pred cCCCCcccEEEeCCCCc
Confidence 22223599999999943
No 40
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=97.13 E-value=0.001 Score=71.97 Aligned_cols=75 Identities=23% Similarity=0.353 Sum_probs=57.3
Q ss_pred cceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcC-------CCcccccchHHHHHHhhcccccccCcCCC
Q psy12304 118 LKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQ-------ECSVIQDDCNLVLKSLLKGHTQHKGVSLP 190 (620)
Q Consensus 118 l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p-------~~~~~~~di~~~~~~~~~~~~~~~~~~~p 190 (620)
-++||||||.|++++.....|. .-+.++|+++.|++.-+.|.. ...++++|+.+.+.....
T Consensus 222 ~rVLDlfsgtG~~~l~aa~~ga-~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~----------- 289 (396)
T PRK15128 222 KRVLNCFSYTGGFAVSALMGGC-SQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRD----------- 289 (396)
T ss_pred CeEEEeccCCCHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHh-----------
Confidence 4799999999999987766776 568999999999988887752 234667888777543211
Q ss_pred CCCccceEEecCCC
Q psy12304 191 QKHEVDLIVAGPPC 204 (620)
Q Consensus 191 ~~~~vD~i~gGpPC 204 (620)
..+.+|+|+.-||+
T Consensus 290 ~~~~fDlVilDPP~ 303 (396)
T PRK15128 290 RGEKFDVIVMDPPK 303 (396)
T ss_pred cCCCCCEEEECCCC
Confidence 12368999999997
No 41
>PHA03411 putative methyltransferase; Provisional
Probab=97.11 E-value=0.0042 Score=63.33 Aligned_cols=139 Identities=14% Similarity=0.029 Sum_probs=84.0
Q ss_pred cceecccccccHHHHHHHhc-CCCccEEEEcCchhHHHHHHHhcCCCcccccchHHHHHHhhcccccccCcCCCCCCccc
Q psy12304 118 LKCLDLFSGCGGLMEGLCQA-GVAKPCWSVELERSEAASYDANFQECSVIQDDCNLVLKSLLKGHTQHKGVSLPQKHEVD 196 (620)
Q Consensus 118 l~~~dLFsG~Gg~s~Gl~~a-G~~~~~~a~e~d~~a~~ty~~N~p~~~~~~~di~~~~~~~~~~~~~~~~~~~p~~~~vD 196 (620)
-+++|++||+|.+++.+... +. .-+.++|+++.+++.-+.|+++..++++|+.++. ..+.+|
T Consensus 66 grVLDLGcGsGilsl~la~r~~~-~~V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~----------------~~~kFD 128 (279)
T PHA03411 66 GKVLDLCAGIGRLSFCMLHRCKP-EKIVCVELNPEFARIGKRLLPEAEWITSDVFEFE----------------SNEKFD 128 (279)
T ss_pred CeEEEcCCCCCHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHhCcCCEEEECchhhhc----------------ccCCCc
Confidence 37999999999998877553 22 3588999999999999999988878888876541 124689
Q ss_pred eEEecCCCCccccccccc---hhhhcccccch-HHHHHHH-hhhcCCcEEEEccccccccccchhHHHHHHHHHHcCCCE
Q psy12304 197 LIVAGPPCQGFSQLNRAR---ELEKSKLKNGL-VFTFLSF-CDLFQPKYIILENVTGLVHFNKNEILQCIFHCLLKMNYQ 271 (620)
Q Consensus 197 ~i~gGpPCQ~fS~~~~~~---~~~~~d~r~~L-~~~~~~~-i~~~~P~~~v~ENV~gl~~~~~~~~~~~i~~~l~~~GY~ 271 (620)
+|++.||--......+.. -++.+..+..| +..++.- -..++|.-.+.+-+.+---...+-.-++....|++.|..
T Consensus 129 lIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~~y~~sl~~~~y~~~l~~~g~~ 208 (279)
T PHA03411 129 VVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRPYYDGTMKSNKYLKWSKQTGLV 208 (279)
T ss_pred EEEEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEeccccccccCCHHHHHHHHHhcCcE
Confidence 999999976644332211 01111222222 3344332 234567755555444432222222234455666677765
Q ss_pred EE
Q psy12304 272 VT 273 (620)
Q Consensus 272 v~ 273 (620)
..
T Consensus 209 ~~ 210 (279)
T PHA03411 209 TY 210 (279)
T ss_pred ec
Confidence 44
No 42
>PHA03412 putative methyltransferase; Provisional
Probab=96.97 E-value=0.0013 Score=65.50 Aligned_cols=71 Identities=21% Similarity=0.248 Sum_probs=56.4
Q ss_pred CcceecccccccHHHHHHHhc----CCCccEEEEcCchhHHHHHHHhcCCCcccccchHHHHHHhhcccccccCcCCCCC
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQA----GVAKPCWSVELERSEAASYDANFQECSVIQDDCNLVLKSLLKGHTQHKGVSLPQK 192 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~a----G~~~~~~a~e~d~~a~~ty~~N~p~~~~~~~di~~~~~~~~~~~~~~~~~~~p~~ 192 (620)
..+++|+.||.|.+++.+... +- ..+.++|+|+.|++.-+.|.++..++++|+... . ..
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~-~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~~--------------~--~~ 112 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKP-REIVCVELNHTYYKLGKRIVPEATWINADALTT--------------E--FD 112 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCC-cEEEEEECCHHHHHHHHhhccCCEEEEcchhcc--------------c--cc
Confidence 458999999999999988653 22 258999999999999999998887777776421 1 12
Q ss_pred CccceEEecCCC
Q psy12304 193 HEVDLIVAGPPC 204 (620)
Q Consensus 193 ~~vD~i~gGpPC 204 (620)
+.+|+|++-||=
T Consensus 113 ~~FDlIIsNPPY 124 (241)
T PHA03412 113 TLFDMAISNPPF 124 (241)
T ss_pred CCccEEEECCCC
Confidence 479999999993
No 43
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=96.96 E-value=0.0061 Score=58.47 Aligned_cols=137 Identities=15% Similarity=0.128 Sum_probs=81.0
Q ss_pred cceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcCC----CcccccchHHHHHHhhcccccccCcCCCCCC
Q psy12304 118 LKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQE----CSVIQDDCNLVLKSLLKGHTQHKGVSLPQKH 193 (620)
Q Consensus 118 l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p~----~~~~~~di~~~~~~~~~~~~~~~~~~~p~~~ 193 (620)
-+++||.||.|.++..+...|. .+.++|+++.+++.-+.|... ..+..+|+.+ .+ .+
T Consensus 21 ~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~----------------~~-~~ 81 (179)
T TIGR00537 21 DDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFK----------------GV-RG 81 (179)
T ss_pred CeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHcCCceEEEEccccc----------------cc-CC
Confidence 3699999999999999999885 588999999999988887531 2222333211 11 24
Q ss_pred ccceEEecCCCCccccccccch-h--hhccc--ccchHHHHHHHh-hhcCCcE--EEEccccccccccchhHHHHHHHHH
Q psy12304 194 EVDLIVAGPPCQGFSQLNRARE-L--EKSKL--KNGLVFTFLSFC-DLFQPKY--IILENVTGLVHFNKNEILQCIFHCL 265 (620)
Q Consensus 194 ~vD~i~gGpPCQ~fS~~~~~~~-~--~~~d~--r~~L~~~~~~~i-~~~~P~~--~v~ENV~gl~~~~~~~~~~~i~~~l 265 (620)
.+|+|+.+||+...+....... . ..... ...++..+++.+ +.++|.- ++.++ ... -...+++.|
T Consensus 82 ~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~--~~~------~~~~~~~~l 153 (179)
T TIGR00537 82 KFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQS--SLN------GEPDTFDKL 153 (179)
T ss_pred cccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEe--ccC------ChHHHHHHH
Confidence 7999999999976653211000 0 00000 012344455433 4557744 33332 111 145677888
Q ss_pred HcCCCEEEEEEEecCCCCCc
Q psy12304 266 LKMNYQVTFDVLQSGNYGVA 285 (620)
Q Consensus 266 ~~~GY~v~~~~l~A~~yGvP 285 (620)
.+.||++.. ...||.|
T Consensus 154 ~~~gf~~~~----~~~~~~~ 169 (179)
T TIGR00537 154 DERGFRYEI----VAERGLF 169 (179)
T ss_pred HhCCCeEEE----EEEeecC
Confidence 889987542 3345544
No 44
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.91 E-value=0.0074 Score=65.93 Aligned_cols=117 Identities=19% Similarity=0.223 Sum_probs=81.4
Q ss_pred CCcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcC-----CCcccccchHHHHHHhhcccccccCcCCC
Q psy12304 116 TPLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQ-----ECSVIQDDCNLVLKSLLKGHTQHKGVSLP 190 (620)
Q Consensus 116 ~~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p-----~~~~~~~di~~~~~~~~~~~~~~~~~~~p 190 (620)
..-+++|||||.|.+++.|..... -+.++|+++.|++.-+.|-- ++....+|..++.....
T Consensus 293 ~~~~vlDlYCGvG~f~l~lA~~~~--~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~------------ 358 (432)
T COG2265 293 GGERVLDLYCGVGTFGLPLAKRVK--KVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWW------------ 358 (432)
T ss_pred CCCEEEEeccCCChhhhhhcccCC--EEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhcc------------
Confidence 345799999999999999986554 48899999999999888742 23444566666543221
Q ss_pred CCCccceEEecCCCCccccccccchhhhcccccchHHHHHHHhhhcCCc--EEEEccccccccccchhHHHHHHHHHHcC
Q psy12304 191 QKHEVDLIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLSFCDLFQPK--YIILENVTGLVHFNKNEILQCIFHCLLKM 268 (620)
Q Consensus 191 ~~~~vD~i~gGpPCQ~fS~~~~~~~~~~~d~r~~L~~~~~~~i~~~~P~--~~v~ENV~gl~~~~~~~~~~~i~~~l~~~ 268 (620)
....+|.|+.-|| +.+ +-.++++.|..+.|+ +.|==|+.. +..=+..|.+.
T Consensus 359 ~~~~~d~VvvDPP-----------R~G-------~~~~~lk~l~~~~p~~IvYVSCNP~T---------laRDl~~L~~~ 411 (432)
T COG2265 359 EGYKPDVVVVDPP-----------RAG-------ADREVLKQLAKLKPKRIVYVSCNPAT---------LARDLAILAST 411 (432)
T ss_pred ccCCCCEEEECCC-----------CCC-------CCHHHHHHHHhcCCCcEEEEeCCHHH---------HHHHHHHHHhC
Confidence 1225799999999 122 223567888899998 444445544 44456778889
Q ss_pred CCEEE
Q psy12304 269 NYQVT 273 (620)
Q Consensus 269 GY~v~ 273 (620)
||.+.
T Consensus 412 gy~i~ 416 (432)
T COG2265 412 GYEIE 416 (432)
T ss_pred CeEEE
Confidence 99765
No 45
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=96.89 E-value=0.00098 Score=65.16 Aligned_cols=69 Identities=22% Similarity=0.382 Sum_probs=45.1
Q ss_pred cceecccccccHHHHHHHh-cCCCccEEEEcCchhHHHHHHHhcC-----C-CcccccchHHHHHHhhcccccccCcCCC
Q psy12304 118 LKCLDLFSGCGGLMEGLCQ-AGVAKPCWSVELERSEAASYDANFQ-----E-CSVIQDDCNLVLKSLLKGHTQHKGVSLP 190 (620)
Q Consensus 118 l~~~dLFsG~Gg~s~Gl~~-aG~~~~~~a~e~d~~a~~ty~~N~p-----~-~~~~~~di~~~~~~~~~~~~~~~~~~~p 190 (620)
=+++|+|||+|.+++-+.. +.. ..++|+|++|.|.+.++.|.- + ..++++|+.+++
T Consensus 103 e~VlD~faGIG~f~l~~ak~~~~-~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~---------------- 165 (200)
T PF02475_consen 103 EVVLDMFAGIGPFSLPIAKHGKA-KRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFL---------------- 165 (200)
T ss_dssp -EEEETT-TTTTTHHHHHHHT-S-SEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG------------------
T ss_pred eEEEEccCCccHHHHHHhhhcCc-cEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhc----------------
Confidence 3799999999999998887 333 579999999999999988741 1 234556665442
Q ss_pred CCCccceEEecCC
Q psy12304 191 QKHEVDLIVAGPP 203 (620)
Q Consensus 191 ~~~~vD~i~gGpP 203 (620)
..+.+|-++.+.|
T Consensus 166 ~~~~~drvim~lp 178 (200)
T PF02475_consen 166 PEGKFDRVIMNLP 178 (200)
T ss_dssp -TT-EEEEEE--T
T ss_pred CccccCEEEECCh
Confidence 2457888888888
No 46
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=96.85 E-value=0.011 Score=63.38 Aligned_cols=82 Identities=18% Similarity=0.358 Sum_probs=56.2
Q ss_pred ceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhc-----CCCcccccchHHHHHHhhcccccc--cCcCCCC
Q psy12304 119 KCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANF-----QECSVIQDDCNLVLKSLLKGHTQH--KGVSLPQ 191 (620)
Q Consensus 119 ~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~-----p~~~~~~~di~~~~~~~~~~~~~~--~~~~~p~ 191 (620)
+++|||||.|++++.+... + .-+.++|+++.|++..+.|. .+..++.+|+.++++.+....... .+... .
T Consensus 209 ~vLDl~~G~G~~sl~la~~-~-~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~-~ 285 (362)
T PRK05031 209 DLLELYCGNGNFTLALARN-F-RRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGIDL-K 285 (362)
T ss_pred eEEEEeccccHHHHHHHhh-C-CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcccccccccccc-c
Confidence 5999999999999988775 4 46899999999999988874 234567889888765432110000 00000 0
Q ss_pred CCccceEEecCC
Q psy12304 192 KHEVDLIVAGPP 203 (620)
Q Consensus 192 ~~~vD~i~gGpP 203 (620)
...+|+|+.-||
T Consensus 286 ~~~~D~v~lDPP 297 (362)
T PRK05031 286 SYNFSTIFVDPP 297 (362)
T ss_pred CCCCCEEEECCC
Confidence 114799999999
No 47
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=96.77 E-value=0.0074 Score=61.87 Aligned_cols=80 Identities=19% Similarity=0.248 Sum_probs=55.8
Q ss_pred cceecccccccHHHHHHHhc-CCCccEEEEcCchhHHHHHHHhcC-----CCcccccchHHHHHHhhcccccccCcCCCC
Q psy12304 118 LKCLDLFSGCGGLMEGLCQA-GVAKPCWSVELERSEAASYDANFQ-----ECSVIQDDCNLVLKSLLKGHTQHKGVSLPQ 191 (620)
Q Consensus 118 l~~~dLFsG~Gg~s~Gl~~a-G~~~~~~a~e~d~~a~~ty~~N~p-----~~~~~~~di~~~~~~~~~~~~~~~~~~~p~ 191 (620)
-+++|+|||.||.++-+.+. +-.-.++|+|+++..++..+.|.. +..++..|...+. . .
T Consensus 73 ~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~------------~---~ 137 (264)
T TIGR00446 73 ERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFG------------A---A 137 (264)
T ss_pred CEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhh------------h---h
Confidence 47999999999999877653 111258999999999998888753 2334445544321 0 1
Q ss_pred CCccceEEecCCCCccccccc
Q psy12304 192 KHEVDLIVAGPPCQGFSQLNR 212 (620)
Q Consensus 192 ~~~vD~i~gGpPCQ~fS~~~~ 212 (620)
.+.+|.|+.-+||.|.....+
T Consensus 138 ~~~fD~Vl~D~Pcsg~G~~~~ 158 (264)
T TIGR00446 138 VPKFDAILLDAPCSGEGVIRK 158 (264)
T ss_pred ccCCCEEEEcCCCCCCccccc
Confidence 235999999999987665543
No 48
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=96.58 E-value=0.0084 Score=65.86 Aligned_cols=82 Identities=16% Similarity=0.220 Sum_probs=57.3
Q ss_pred CcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcCCC----cccccchHHHHHHhhcccccccCcCCCCC
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQEC----SVIQDDCNLVLKSLLKGHTQHKGVSLPQK 192 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p~~----~~~~~di~~~~~~~~~~~~~~~~~~~p~~ 192 (620)
.-+++|++||.|+.++-+.+.+-...++|+|+++.+++..+.|.... .+.++|+.++. .....
T Consensus 245 g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~-------------~~~~~ 311 (427)
T PRK10901 245 GERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPA-------------QWWDG 311 (427)
T ss_pred CCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccch-------------hhccc
Confidence 34799999999999988887542136899999999999998886432 23344443220 01113
Q ss_pred CccceEEecCCCCcccccc
Q psy12304 193 HEVDLIVAGPPCQGFSQLN 211 (620)
Q Consensus 193 ~~vD~i~gGpPCQ~fS~~~ 211 (620)
+.+|.|+..+||.+.....
T Consensus 312 ~~fD~Vl~D~Pcs~~G~~~ 330 (427)
T PRK10901 312 QPFDRILLDAPCSATGVIR 330 (427)
T ss_pred CCCCEEEECCCCCcccccc
Confidence 4699999999998755443
No 49
>PRK14967 putative methyltransferase; Provisional
Probab=96.54 E-value=0.025 Score=56.35 Aligned_cols=135 Identities=17% Similarity=0.151 Sum_probs=77.3
Q ss_pred cceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcC----CCcccccchHHHHHHhhcccccccCcCCCCCC
Q psy12304 118 LKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQ----ECSVIQDDCNLVLKSLLKGHTQHKGVSLPQKH 193 (620)
Q Consensus 118 l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p----~~~~~~~di~~~~~~~~~~~~~~~~~~~p~~~ 193 (620)
-+++|++||.|.+++-+...|. .-+.++|+++.+++.-+.|.. +..++++|+.+. ++ .+
T Consensus 38 ~~vLDlGcG~G~~~~~la~~~~-~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~---------------~~-~~ 100 (223)
T PRK14967 38 RRVLDLCTGSGALAVAAAAAGA-GSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARA---------------VE-FR 100 (223)
T ss_pred CeEEEecCCHHHHHHHHHHcCC-CeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhh---------------cc-CC
Confidence 4799999999999998888776 468999999999987777642 223344444321 11 24
Q ss_pred ccceEEecCCCCccccccccchhh---h--cccccchHHHHHH-HhhhcCCcEEEEccccccccccchhHHHHHHHHHHc
Q psy12304 194 EVDLIVAGPPCQGFSQLNRARELE---K--SKLKNGLVFTFLS-FCDLFQPKYIILENVTGLVHFNKNEILQCIFHCLLK 267 (620)
Q Consensus 194 ~vD~i~gGpPCQ~fS~~~~~~~~~---~--~d~r~~L~~~~~~-~i~~~~P~~~v~ENV~gl~~~~~~~~~~~i~~~l~~ 267 (620)
.+|+|+..||-..-+..+...... . ......++..+++ +.+.++|.-.++=-...+ ..+..+++.|.+
T Consensus 101 ~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~------~~~~~~~~~l~~ 174 (223)
T PRK14967 101 PFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSEL------SGVERTLTRLSE 174 (223)
T ss_pred CeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecc------cCHHHHHHHHHH
Confidence 799999998754333221110000 0 0001112334443 445677865444001111 124567777888
Q ss_pred CCCEEEEE
Q psy12304 268 MNYQVTFD 275 (620)
Q Consensus 268 ~GY~v~~~ 275 (620)
.|+++...
T Consensus 175 ~g~~~~~~ 182 (223)
T PRK14967 175 AGLDAEVV 182 (223)
T ss_pred CCCCeEEE
Confidence 88875543
No 50
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=96.46 E-value=0.0061 Score=65.46 Aligned_cols=72 Identities=18% Similarity=0.245 Sum_probs=55.4
Q ss_pred CcceecccccccHHHHHHHhc--CCCccEEEEcCchhHHHHHHHhcC-----CCcccccchHHHHHHhhcccccccCcCC
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQA--GVAKPCWSVELERSEAASYDANFQ-----ECSVIQDDCNLVLKSLLKGHTQHKGVSL 189 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~a--G~~~~~~a~e~d~~a~~ty~~N~p-----~~~~~~~di~~~~~~~~~~~~~~~~~~~ 189 (620)
.+++||+|||+|.+++=+... |. +-++++|+++.|++..+.|.. +..++++|...++...
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga-~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~------------ 111 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGV-REVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYR------------ 111 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCC-CEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHh------------
Confidence 589999999999998777654 76 779999999999999988852 3457788888775421
Q ss_pred CCCCccceEEecCC
Q psy12304 190 PQKHEVDLIVAGPP 203 (620)
Q Consensus 190 p~~~~vD~i~gGpP 203 (620)
...+|+|..-|+
T Consensus 112 --~~~fDvIdlDPf 123 (374)
T TIGR00308 112 --NRKFHVIDIDPF 123 (374)
T ss_pred --CCCCCEEEeCCC
Confidence 124788887775
No 51
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=96.46 E-value=0.012 Score=64.91 Aligned_cols=130 Identities=16% Similarity=0.204 Sum_probs=76.3
Q ss_pred cceecccccccHHHHHHHhc-CCCccEEEEcCchhHHHHHHHhcCC-----CcccccchHHHHHHhhcccccccCcCCCC
Q psy12304 118 LKCLDLFSGCGGLMEGLCQA-GVAKPCWSVELERSEAASYDANFQE-----CSVIQDDCNLVLKSLLKGHTQHKGVSLPQ 191 (620)
Q Consensus 118 l~~~dLFsG~Gg~s~Gl~~a-G~~~~~~a~e~d~~a~~ty~~N~p~-----~~~~~~di~~~~~~~~~~~~~~~~~~~p~ 191 (620)
-+++|+|||.||.++-+... +-...++|+|+++..++..+.|... ..+.++|..+ ++.
T Consensus 252 ~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~----------------~~~ 315 (445)
T PRK14904 252 STVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARS----------------FSP 315 (445)
T ss_pred CEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccc----------------ccc
Confidence 47999999999998766542 1112589999999999988887632 2233334322 122
Q ss_pred CCccceEEecCCCCccccccccchhhhccc---ccc---hHHHHH-HHhhhcCCcEEEEccccccccccchhHHHHHHH
Q psy12304 192 KHEVDLIVAGPPCQGFSQLNRARELEKSKL---KNG---LVFTFL-SFCDLFQPKYIILENVTGLVHFNKNEILQCIFH 263 (620)
Q Consensus 192 ~~~vD~i~gGpPCQ~fS~~~~~~~~~~~d~---r~~---L~~~~~-~~i~~~~P~~~v~ENV~gl~~~~~~~~~~~i~~ 263 (620)
.+.+|+|+..+||.|.....+......... ... +-..++ +..+.++|.-.++=....+....+....+.+++
T Consensus 316 ~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~~Ene~~v~~~l~ 394 (445)
T PRK14904 316 EEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEPEENELQIEAFLQ 394 (445)
T ss_pred CCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHHHHHHHHH
Confidence 346999999999999887654211100000 000 111122 234456887777666666654433334444443
No 52
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=96.43 E-value=0.011 Score=65.21 Aligned_cols=80 Identities=15% Similarity=0.242 Sum_probs=56.2
Q ss_pred cceecccccccHHHHHHHhc-CCCccEEEEcCchhHHHHHHHhcCC-----CcccccchHHHHHHhhcccccccCcCCCC
Q psy12304 118 LKCLDLFSGCGGLMEGLCQA-GVAKPCWSVELERSEAASYDANFQE-----CSVIQDDCNLVLKSLLKGHTQHKGVSLPQ 191 (620)
Q Consensus 118 l~~~dLFsG~Gg~s~Gl~~a-G~~~~~~a~e~d~~a~~ty~~N~p~-----~~~~~~di~~~~~~~~~~~~~~~~~~~p~ 191 (620)
-+++|++||.|+.++-+... +-...+.|+|+++.+.+..+.|... ..++++|+.++. ..++
T Consensus 252 ~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~------------~~~~- 318 (444)
T PRK14902 252 DTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVH------------EKFA- 318 (444)
T ss_pred CEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCccccc------------chhc-
Confidence 47999999999999887763 1113588999999999988887532 233444543221 1122
Q ss_pred CCccceEEecCCCCcccccc
Q psy12304 192 KHEVDLIVAGPPCQGFSQLN 211 (620)
Q Consensus 192 ~~~vD~i~gGpPCQ~fS~~~ 211 (620)
+.+|+|+..+||.++....
T Consensus 319 -~~fD~Vl~D~Pcsg~G~~~ 337 (444)
T PRK14902 319 -EKFDKILVDAPCSGLGVIR 337 (444)
T ss_pred -ccCCEEEEcCCCCCCeeec
Confidence 5799999999998876554
No 53
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=96.41 E-value=0.0043 Score=59.17 Aligned_cols=71 Identities=28% Similarity=0.375 Sum_probs=50.5
Q ss_pred CcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcCCC-----cccccchHHHHHHhhcccccccCcCCCC
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQEC-----SVIQDDCNLVLKSLLKGHTQHKGVSLPQ 191 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p~~-----~~~~~di~~~~~~~~~~~~~~~~~~~p~ 191 (620)
.-+++||.||+|.+++.+...+-...+.++|+++.|++.-+.|.... .++..|+. ..++
T Consensus 32 ~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~---------------~~~~- 95 (170)
T PF05175_consen 32 GGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLF---------------EALP- 95 (170)
T ss_dssp TCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTT---------------TTCC-
T ss_pred CCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCcccccccccccc---------------cccc-
Confidence 34799999999999999998776325999999999999998886422 23333431 1232
Q ss_pred CCccceEEecCC
Q psy12304 192 KHEVDLIVAGPP 203 (620)
Q Consensus 192 ~~~vD~i~gGpP 203 (620)
.+.+|+|+..||
T Consensus 96 ~~~fD~Iv~NPP 107 (170)
T PF05175_consen 96 DGKFDLIVSNPP 107 (170)
T ss_dssp TTCEEEEEE---
T ss_pred ccceeEEEEccc
Confidence 468999999999
No 54
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=96.31 E-value=0.044 Score=58.94 Aligned_cols=131 Identities=19% Similarity=0.247 Sum_probs=89.3
Q ss_pred ceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcC-------CCcccccchHHHHHHhhcccccccCcCCCC
Q psy12304 119 KCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQ-------ECSVIQDDCNLVLKSLLKGHTQHKGVSLPQ 191 (620)
Q Consensus 119 ~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p-------~~~~~~~di~~~~~~~~~~~~~~~~~~~p~ 191 (620)
+||+|||=.||+|+-...+|. .-+.+||++..|++.-+.|+- ....+++|+-+.++.... .
T Consensus 220 rvLNlFsYTGgfSv~Aa~gGA-~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~-----------~ 287 (393)
T COG1092 220 RVLNLFSYTGGFSVHAALGGA-SEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAER-----------R 287 (393)
T ss_pred eEEEecccCcHHHHHHHhcCC-CceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHh-----------c
Confidence 599999999999999999998 568899999999999888852 134677898888765432 1
Q ss_pred CCccceEEecCCCCccccccccchhhhcccccchHHHHHHH----hhhcCC--cEEEEccccccccccchhHHHHHHHHH
Q psy12304 192 KHEVDLIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLSF----CDLFQP--KYIILENVTGLVHFNKNEILQCIFHCL 265 (620)
Q Consensus 192 ~~~vD~i~gGpPCQ~fS~~~~~~~~~~~d~r~~L~~~~~~~----i~~~~P--~~~v~ENV~gl~~~~~~~~~~~i~~~l 265 (620)
...+|+|+.-|| .|+...+ .. -+....|.++ ++.++| -.++.-|-..+- ...+.+.+.+++
T Consensus 288 g~~fDlIilDPP--sF~r~k~---~~-----~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~~---~~~f~~~i~~a~ 354 (393)
T COG1092 288 GEKFDLIILDPP--SFARSKK---QE-----FSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHFS---SDLFLEIIARAA 354 (393)
T ss_pred CCcccEEEECCc--ccccCcc---cc-----hhHHHHHHHHHHHHHHHcCCCCEEEEEecCCccC---HHHHHHHHHHHH
Confidence 227899999999 4444221 11 1223333333 345677 455566665553 235666777888
Q ss_pred HcCCCEEEE
Q psy12304 266 LKMNYQVTF 274 (620)
Q Consensus 266 ~~~GY~v~~ 274 (620)
..+|..+++
T Consensus 355 ~~~~~~~~~ 363 (393)
T COG1092 355 AAAGRRAQE 363 (393)
T ss_pred HhcCCcEEE
Confidence 877765543
No 55
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=96.29 E-value=0.018 Score=63.34 Aligned_cols=83 Identities=23% Similarity=0.347 Sum_probs=57.2
Q ss_pred cceecccccccHHHHHHHhc-CCCccEEEEcCchhHHHHHHHhcC-----CCcccccchHHHHHHhhcccccccCcCC-C
Q psy12304 118 LKCLDLFSGCGGLMEGLCQA-GVAKPCWSVELERSEAASYDANFQ-----ECSVIQDDCNLVLKSLLKGHTQHKGVSL-P 190 (620)
Q Consensus 118 l~~~dLFsG~Gg~s~Gl~~a-G~~~~~~a~e~d~~a~~ty~~N~p-----~~~~~~~di~~~~~~~~~~~~~~~~~~~-p 190 (620)
-+++|++||.||.++-+... +-.-.+.|+|+++..++..+.|.. +..++++|...+. ... .
T Consensus 254 ~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~------------~~~~~ 321 (434)
T PRK14901 254 EVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLL------------ELKPQ 321 (434)
T ss_pred CEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcc------------ccccc
Confidence 47999999999999888764 211258999999999988888753 2344455554321 000 0
Q ss_pred CCCccceEEecCCCCccccccc
Q psy12304 191 QKHEVDLIVAGPPCQGFSQLNR 212 (620)
Q Consensus 191 ~~~~vD~i~gGpPCQ~fS~~~~ 212 (620)
..+.+|.|+..+||.|.....+
T Consensus 322 ~~~~fD~Vl~DaPCSg~G~~~r 343 (434)
T PRK14901 322 WRGYFDRILLDAPCSGLGTLHR 343 (434)
T ss_pred ccccCCEEEEeCCCCccccccc
Confidence 1347999999999998655543
No 56
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=96.26 E-value=0.012 Score=60.88 Aligned_cols=76 Identities=26% Similarity=0.347 Sum_probs=54.6
Q ss_pred cceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcCC------CcccccchHHHHHHhhcccccccCcCCCC
Q psy12304 118 LKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQE------CSVIQDDCNLVLKSLLKGHTQHKGVSLPQ 191 (620)
Q Consensus 118 l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p~------~~~~~~di~~~~~~~~~~~~~~~~~~~p~ 191 (620)
.+++|++||.|.+++.+....-...+.++|+++.|++.-+.|... ..++.+|+.+ .++
T Consensus 123 ~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~---------------~~~- 186 (284)
T TIGR03533 123 KRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFA---------------ALP- 186 (284)
T ss_pred CEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhh---------------ccC-
Confidence 479999999999999998753212588999999999988887531 2234444421 122
Q ss_pred CCccceEEecCCCCcccc
Q psy12304 192 KHEVDLIVAGPPCQGFSQ 209 (620)
Q Consensus 192 ~~~vD~i~gGpPCQ~fS~ 209 (620)
.+.+|+|+.-||+-..+.
T Consensus 187 ~~~fD~Iv~NPPy~~~~~ 204 (284)
T TIGR03533 187 GRKYDLIVSNPPYVDAED 204 (284)
T ss_pred CCCccEEEECCCCCCccc
Confidence 236999999999977654
No 57
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=96.16 E-value=0.0093 Score=56.70 Aligned_cols=69 Identities=25% Similarity=0.325 Sum_probs=52.4
Q ss_pred cceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcCC---CcccccchHHHHHHhhcccccccCcCCCCCCc
Q psy12304 118 LKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQE---CSVIQDDCNLVLKSLLKGHTQHKGVSLPQKHE 194 (620)
Q Consensus 118 l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p~---~~~~~~di~~~~~~~~~~~~~~~~~~~p~~~~ 194 (620)
-+++|++||.|.++.-+...+. -+.++|+|+.+++..+.|+.+ ..++++|+.++ ..+ ...
T Consensus 15 ~~vLEiG~G~G~lt~~l~~~~~--~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~--------------~~~-~~~ 77 (169)
T smart00650 15 DTVLEIGPGKGALTEELLERAA--RVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKF--------------DLP-KLQ 77 (169)
T ss_pred CEEEEECCCccHHHHHHHhcCC--eEEEEECCHHHHHHHHHHhccCCCEEEEECchhcC--------------Ccc-ccC
Confidence 3799999999999999988754 589999999999999998753 44555665432 111 124
Q ss_pred cceEEecCC
Q psy12304 195 VDLIVAGPP 203 (620)
Q Consensus 195 vD~i~gGpP 203 (620)
+|.|++.+|
T Consensus 78 ~d~vi~n~P 86 (169)
T smart00650 78 PYKVVGNLP 86 (169)
T ss_pred CCEEEECCC
Confidence 799999888
No 58
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=96.13 E-value=0.0091 Score=65.93 Aligned_cols=76 Identities=18% Similarity=0.230 Sum_probs=56.0
Q ss_pred cceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhc-----CCCcccccchHHHHHHhhcccccccCcCCCCC
Q psy12304 118 LKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANF-----QECSVIQDDCNLVLKSLLKGHTQHKGVSLPQK 192 (620)
Q Consensus 118 l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~-----p~~~~~~~di~~~~~~~~~~~~~~~~~~~p~~ 192 (620)
-+++|||||.|.+++.|...+. .+.|+|+++.|++.-+.|. .+..++++|+.+.+... .+ ..
T Consensus 299 ~~VLDlgcGtG~~sl~la~~~~--~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~----------~~-~~ 365 (443)
T PRK13168 299 DRVLDLFCGLGNFTLPLARQAA--EVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQ----------PW-AL 365 (443)
T ss_pred CEEEEEeccCCHHHHHHHHhCC--EEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhh----------hh-hc
Confidence 4799999999999999988764 5889999999999888774 23456667775542110 01 12
Q ss_pred CccceEEecCCCCc
Q psy12304 193 HEVDLIVAGPPCQG 206 (620)
Q Consensus 193 ~~vD~i~gGpPCQ~ 206 (620)
+.+|+|+.-||+.|
T Consensus 366 ~~fD~Vi~dPPr~g 379 (443)
T PRK13168 366 GGFDKVLLDPPRAG 379 (443)
T ss_pred CCCCEEEECcCCcC
Confidence 35899999999754
No 59
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=96.13 E-value=0.03 Score=56.51 Aligned_cols=78 Identities=27% Similarity=0.383 Sum_probs=55.2
Q ss_pred CcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcCC-----CcccccchHHHHHHhhcccccccCcCCCC
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQE-----CSVIQDDCNLVLKSLLKGHTQHKGVSLPQ 191 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p~-----~~~~~~di~~~~~~~~~~~~~~~~~~~p~ 191 (620)
..+++|+.||.|.++.-+....-...+.++|+++.+++.-+.|... ..++++|+.+ .++
T Consensus 88 ~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~---------------~~~- 151 (251)
T TIGR03534 88 PLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFE---------------PLP- 151 (251)
T ss_pred CCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhc---------------cCc-
Confidence 3579999999999998888752213588999999999888776432 3344444421 111
Q ss_pred CCccceEEecCCCCccccc
Q psy12304 192 KHEVDLIVAGPPCQGFSQL 210 (620)
Q Consensus 192 ~~~vD~i~gGpPCQ~fS~~ 210 (620)
.+.+|+|++.||+...+..
T Consensus 152 ~~~fD~Vi~npPy~~~~~~ 170 (251)
T TIGR03534 152 GGKFDLIVSNPPYIPEADI 170 (251)
T ss_pred CCceeEEEECCCCCchhhh
Confidence 3579999999998876643
No 60
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=96.11 E-value=0.011 Score=63.82 Aligned_cols=70 Identities=19% Similarity=0.223 Sum_probs=54.0
Q ss_pred cceecccccccHHHHHHHh-cCCCccEEEEcCchhHHHHHHHhc-----CCCcccccchHHHHHHhhcccccccCcCCCC
Q psy12304 118 LKCLDLFSGCGGLMEGLCQ-AGVAKPCWSVELERSEAASYDANF-----QECSVIQDDCNLVLKSLLKGHTQHKGVSLPQ 191 (620)
Q Consensus 118 l~~~dLFsG~Gg~s~Gl~~-aG~~~~~~a~e~d~~a~~ty~~N~-----p~~~~~~~di~~~~~~~~~~~~~~~~~~~p~ 191 (620)
.+++|+|||+|.+++-+.. .|. .-++++|+++.|++..+.|. .+..++++|+..++..
T Consensus 59 ~~vLDl~aGsG~~~l~~a~~~~~-~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~--------------- 122 (382)
T PRK04338 59 ESVLDALSASGIRGIRYALETGV-EKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHE--------------- 122 (382)
T ss_pred CEEEECCCcccHHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhh---------------
Confidence 5799999999999998854 565 56999999999999998874 2234677788765421
Q ss_pred CCccceEEecCC
Q psy12304 192 KHEVDLIVAGPP 203 (620)
Q Consensus 192 ~~~vD~i~gGpP 203 (620)
.+.+|+|..-||
T Consensus 123 ~~~fD~V~lDP~ 134 (382)
T PRK04338 123 ERKFDVVDIDPF 134 (382)
T ss_pred cCCCCEEEECCC
Confidence 125899999887
No 61
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=96.09 E-value=0.066 Score=54.89 Aligned_cols=78 Identities=27% Similarity=0.372 Sum_probs=55.9
Q ss_pred CCcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcC-----CCcccccchHHHHHHhhcccccccCcCCC
Q psy12304 116 TPLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQ-----ECSVIQDDCNLVLKSLLKGHTQHKGVSLP 190 (620)
Q Consensus 116 ~~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p-----~~~~~~~di~~~~~~~~~~~~~~~~~~~p 190 (620)
...+++|+.||.|.+++.+....-...+.++|+++.+++.-+.|.. +..++.+|+. ..++
T Consensus 108 ~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~---------------~~~~ 172 (275)
T PRK09328 108 EPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWF---------------EPLP 172 (275)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEcccc---------------CcCC
Confidence 3468999999999999888876522358899999999999888854 2223333331 1111
Q ss_pred CCCccceEEecCCCCcccc
Q psy12304 191 QKHEVDLIVAGPPCQGFSQ 209 (620)
Q Consensus 191 ~~~~vD~i~gGpPCQ~fS~ 209 (620)
.+.+|+|+..||+-+.+.
T Consensus 173 -~~~fD~Iv~npPy~~~~~ 190 (275)
T PRK09328 173 -GGRFDLIVSNPPYIPEAD 190 (275)
T ss_pred -CCceeEEEECCCcCCcch
Confidence 357999999999977654
No 62
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=96.06 E-value=0.028 Score=46.86 Aligned_cols=74 Identities=19% Similarity=0.284 Sum_probs=52.3
Q ss_pred ceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhc-----CCCcccccchHHHHHHhhcccccccCcCCCCCC
Q psy12304 119 KCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANF-----QECSVIQDDCNLVLKSLLKGHTQHKGVSLPQKH 193 (620)
Q Consensus 119 ~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~-----p~~~~~~~di~~~~~~~~~~~~~~~~~~~p~~~ 193 (620)
+++|+.||.|+++..+...+. ..+.++|+++.+....+.+. ....++..|+.+.. . ...+
T Consensus 1 ~ildig~G~G~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~-~~~~ 65 (107)
T cd02440 1 RVLDLGCGTGALALALASGPG-ARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELP-------------P-EADE 65 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCC-CEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhc-------------c-ccCC
Confidence 479999999999999988544 56899999999988776221 12234445554331 0 1235
Q ss_pred ccceEEecCCCCcc
Q psy12304 194 EVDLIVAGPPCQGF 207 (620)
Q Consensus 194 ~vD~i~gGpPCQ~f 207 (620)
.+|+++..++|..+
T Consensus 66 ~~d~i~~~~~~~~~ 79 (107)
T cd02440 66 SFDVIISDPPLHHL 79 (107)
T ss_pred ceEEEEEccceeeh
Confidence 79999999999876
No 63
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=96.05 E-value=0.057 Score=52.98 Aligned_cols=130 Identities=12% Similarity=0.098 Sum_probs=79.4
Q ss_pred CcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhc-----CCCcccccch-HHHHHHhhcccccccCcCCC
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANF-----QECSVIQDDC-NLVLKSLLKGHTQHKGVSLP 190 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~-----p~~~~~~~di-~~~~~~~~~~~~~~~~~~~p 190 (620)
.-+++|+.||.|.++..+....-...++++|+++.+++.-+.|. ++..++++|+ ..+.. .+
T Consensus 41 ~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~------------~~- 107 (202)
T PRK00121 41 APIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLD------------MF- 107 (202)
T ss_pred CCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHH------------Hc-
Confidence 45799999999999998866421135899999999988877664 3455667777 43311 11
Q ss_pred CCCccceEEecCCCCccccccccchhhhcccccchHHHHHH-HhhhcCCcEEEEccccccccccchhHHHHHHHHHHcCC
Q psy12304 191 QKHEVDLIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLS-FCDLFQPKYIILENVTGLVHFNKNEILQCIFHCLLKMN 269 (620)
Q Consensus 191 ~~~~vD~i~gGpPCQ~fS~~~~~~~~~~~d~r~~L~~~~~~-~i~~~~P~~~v~ENV~gl~~~~~~~~~~~i~~~l~~~G 269 (620)
..+.+|+|+..+|.+....... .+......+++ +.+.++|.-.++ +.......+..+++.+.+.|
T Consensus 108 ~~~~~D~V~~~~~~p~~~~~~~--------~~~~~~~~~l~~i~~~LkpgG~l~------i~~~~~~~~~~~~~~~~~~g 173 (202)
T PRK00121 108 PDGSLDRIYLNFPDPWPKKRHH--------KRRLVQPEFLALYARKLKPGGEIH------FATDWEGYAEYMLEVLSAEG 173 (202)
T ss_pred CccccceEEEECCCCCCCcccc--------ccccCCHHHHHHHHHHcCCCCEEE------EEcCCHHHHHHHHHHHHhCc
Confidence 1346899988766443322111 01111222333 344677865443 12223455778889999989
Q ss_pred CEEE
Q psy12304 270 YQVT 273 (620)
Q Consensus 270 Y~v~ 273 (620)
+.++
T Consensus 174 ~~~~ 177 (202)
T PRK00121 174 GFLV 177 (202)
T ss_pred cccc
Confidence 7665
No 64
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=96.03 E-value=0.017 Score=60.53 Aligned_cols=76 Identities=25% Similarity=0.341 Sum_probs=54.9
Q ss_pred cceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcCC------CcccccchHHHHHHhhcccccccCcCCCC
Q psy12304 118 LKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQE------CSVIQDDCNLVLKSLLKGHTQHKGVSLPQ 191 (620)
Q Consensus 118 l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p~------~~~~~~di~~~~~~~~~~~~~~~~~~~p~ 191 (620)
.+++|++||.|.+++.+....-...+.++|+++.|++.-+.|... ..++++|+.+ .+|
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~---------------~l~- 198 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFA---------------ALP- 198 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhh---------------hCC-
Confidence 479999999999999988753213588999999999998888531 2334445422 122
Q ss_pred CCccceEEecCCCCcccc
Q psy12304 192 KHEVDLIVAGPPCQGFSQ 209 (620)
Q Consensus 192 ~~~vD~i~gGpPCQ~fS~ 209 (620)
.+.+|+|+.-||+-+.+.
T Consensus 199 ~~~fDlIvsNPPyi~~~~ 216 (307)
T PRK11805 199 GRRYDLIVSNPPYVDAED 216 (307)
T ss_pred CCCccEEEECCCCCCccc
Confidence 246999999999977543
No 65
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=95.99 E-value=0.062 Score=57.47 Aligned_cols=82 Identities=18% Similarity=0.316 Sum_probs=54.8
Q ss_pred ceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcC-----CCcccccchHHHHHHhhcc-ccc-ccCcCCCC
Q psy12304 119 KCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQ-----ECSVIQDDCNLVLKSLLKG-HTQ-HKGVSLPQ 191 (620)
Q Consensus 119 ~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p-----~~~~~~~di~~~~~~~~~~-~~~-~~~~~~p~ 191 (620)
+++|||||.|.+++.|.... ..+.++|+++.|++..+.|.. +..++.+|+.+++.....- ... ..+... .
T Consensus 200 ~vlDl~~G~G~~sl~la~~~--~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~-~ 276 (353)
T TIGR02143 200 DLLELYCGNGNFSLALAQNF--RRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDL-K 276 (353)
T ss_pred cEEEEeccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhcccccccccccc-c
Confidence 59999999999999777653 469999999999999988852 3456778887765431100 000 000000 0
Q ss_pred CCccceEEecCC
Q psy12304 192 KHEVDLIVAGPP 203 (620)
Q Consensus 192 ~~~vD~i~gGpP 203 (620)
...+|+|+.-||
T Consensus 277 ~~~~d~v~lDPP 288 (353)
T TIGR02143 277 SYNCSTIFVDPP 288 (353)
T ss_pred cCCCCEEEECCC
Confidence 113699999999
No 66
>KOG3554|consensus
Probab=95.98 E-value=0.0027 Score=66.97 Aligned_cols=56 Identities=25% Similarity=0.423 Sum_probs=49.8
Q ss_pred CCCeEEecCceeeeccccccceEEEEEeCCCCChhHhhhcCCCCCCeEEEEEEEecCCCcc
Q psy12304 23 DNSTLFLTNACESIDLSVIKKTVCVDFVTNDSSEEEILDNEHEEKDETIYTEYYRKTKDKH 83 (620)
Q Consensus 23 d~~eLf~Sd~~~~v~~~~I~gkC~V~~~~~~~~i~~~~~~~~~~pd~Fy~~~~y~~~~~~~ 83 (620)
..+|||+|-+.+..|...|.|||.|..+.+.+++..|+... |.||+...|+ ...++
T Consensus 104 rhrElFlsRQ~EsLPAthIRGKCsV~LLnete~~~~YL~~e----DtFfySLVyD-P~~kT 159 (693)
T KOG3554|consen 104 RHRELFLSRQSESLPATHIRGKCSVTLLNETESLQSYLEKE----DTFFYSLVYD-PNQKT 159 (693)
T ss_pred HHHHHHHhhhhccCchhhhccceeEEEecChHHHHhhcccc----ceeEEEeeec-cchhh
Confidence 36899999999999999999999999999999999999874 8999999998 54444
No 67
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=95.81 E-value=0.018 Score=53.58 Aligned_cols=75 Identities=20% Similarity=0.232 Sum_probs=54.2
Q ss_pred CCcceecccccccHHHHHHH-hcCCCccEEEEcCchhHHHHHHHh-----cCCCcccccchHHHHHHhhcccccccCcCC
Q psy12304 116 TPLKCLDLFSGCGGLMEGLC-QAGVAKPCWSVELERSEAASYDAN-----FQECSVIQDDCNLVLKSLLKGHTQHKGVSL 189 (620)
Q Consensus 116 ~~l~~~dLFsG~Gg~s~Gl~-~aG~~~~~~a~e~d~~a~~ty~~N-----~p~~~~~~~di~~~~~~~~~~~~~~~~~~~ 189 (620)
+..++|||.||.|.+...+. ..+-..-++++|+++.+++..+.+ +++..++.+|+.++ ... +
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l-----------~~~-~ 70 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDL-----------PQE-L 70 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCG-----------CGC-S
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhcc-----------ccc-c
Confidence 45789999999999999999 443212489999999999888774 34455666776542 101 2
Q ss_pred CCCCccceEEecCCC
Q psy12304 190 PQKHEVDLIVAGPPC 204 (620)
Q Consensus 190 p~~~~vD~i~gGpPC 204 (620)
+ +.+|+|+...++
T Consensus 71 ~--~~~D~I~~~~~l 83 (152)
T PF13847_consen 71 E--EKFDIIISNGVL 83 (152)
T ss_dssp S--TTEEEEEEESTG
T ss_pred C--CCeeEEEEcCch
Confidence 2 689999999887
No 68
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=95.76 E-value=0.17 Score=49.36 Aligned_cols=119 Identities=14% Similarity=0.213 Sum_probs=72.0
Q ss_pred CcceecccccccHHHHHHHh-cCCCccEEEEcCchhHHHHHHHhc------CCCcccccchHHHHHHhhcccccccCcCC
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQ-AGVAKPCWSVELERSEAASYDANF------QECSVIQDDCNLVLKSLLKGHTQHKGVSL 189 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~-aG~~~~~~a~e~d~~a~~ty~~N~------p~~~~~~~di~~~~~~~~~~~~~~~~~~~ 189 (620)
.-+++|++||.|.+++.+.. .|-...++++|+++.+++.-+.|. .+..++++|..+.+.. +
T Consensus 41 ~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~------------~ 108 (198)
T PRK00377 41 GDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFT------------I 108 (198)
T ss_pred cCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhh------------c
Confidence 34799999999999988754 332135899999999988766663 1233445555443211 1
Q ss_pred CCCCccceEEecCCCCccccccccchhhhcccccchHHHHHH-HhhhcCCcEE-EEccccccccccchhHHHHHHHHHHc
Q psy12304 190 PQKHEVDLIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLS-FCDLFQPKYI-ILENVTGLVHFNKNEILQCIFHCLLK 267 (620)
Q Consensus 190 p~~~~vD~i~gGpPCQ~fS~~~~~~~~~~~d~r~~L~~~~~~-~i~~~~P~~~-v~ENV~gl~~~~~~~~~~~i~~~l~~ 267 (620)
.+.+|.++.+.. . . + +..+++ +.+.++|.-. +++.+ .+ +.+..++..|.+
T Consensus 109 --~~~~D~V~~~~~--------~---~---~-----~~~~l~~~~~~LkpgG~lv~~~~-~~------~~~~~~~~~l~~ 160 (198)
T PRK00377 109 --NEKFDRIFIGGG--------S---E---K-----LKEIISASWEIIKKGGRIVIDAI-LL------ETVNNALSALEN 160 (198)
T ss_pred --CCCCCEEEECCC--------c---c---c-----HHHHHHHHHHHcCCCcEEEEEee-cH------HHHHHHHHHHHH
Confidence 136898887531 0 0 0 112222 3345678553 44333 22 346788889999
Q ss_pred CCCEEEEE
Q psy12304 268 MNYQVTFD 275 (620)
Q Consensus 268 ~GY~v~~~ 275 (620)
+|+.+...
T Consensus 161 ~g~~~~~~ 168 (198)
T PRK00377 161 IGFNLEIT 168 (198)
T ss_pred cCCCeEEE
Confidence 99866543
No 69
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=95.68 E-value=0.024 Score=60.09 Aligned_cols=75 Identities=24% Similarity=0.364 Sum_probs=53.1
Q ss_pred CcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcC-----CCcccccchHHHHHHhhcccccccCcCCCC
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQ-----ECSVIQDDCNLVLKSLLKGHTQHKGVSLPQ 191 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p-----~~~~~~~di~~~~~~~~~~~~~~~~~~~p~ 191 (620)
.-+++|+|||.|++.+-+...|. .+.++|+|+.+++.-+.|.. +..++.+|+.+ +|.
T Consensus 183 g~~vLDp~cGtG~~lieaa~~~~--~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~----------------l~~ 244 (329)
T TIGR01177 183 GDRVLDPFCGTGGFLIEAGLMGA--KVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATK----------------LPL 244 (329)
T ss_pred cCEEEECCCCCCHHHHHHHHhCC--eEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhc----------------CCc
Confidence 34799999999999877666675 48899999999887777752 22334444432 222
Q ss_pred -CCccceEEecCCCCcccc
Q psy12304 192 -KHEVDLIVAGPPCQGFSQ 209 (620)
Q Consensus 192 -~~~vD~i~gGpPCQ~fS~ 209 (620)
.+.+|+|+..|||-..+.
T Consensus 245 ~~~~~D~Iv~dPPyg~~~~ 263 (329)
T TIGR01177 245 SSESVDAIATDPPYGRSTT 263 (329)
T ss_pred ccCCCCEEEECCCCcCccc
Confidence 357899999999855443
No 70
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=95.66 E-value=0.056 Score=59.43 Aligned_cols=131 Identities=14% Similarity=0.227 Sum_probs=76.1
Q ss_pred cceecccccccHHHHHHHhc-CCCccEEEEcCchhHHHHHHHhcCC-----CcccccchHHHHHHhhcccccccCcCCCC
Q psy12304 118 LKCLDLFSGCGGLMEGLCQA-GVAKPCWSVELERSEAASYDANFQE-----CSVIQDDCNLVLKSLLKGHTQHKGVSLPQ 191 (620)
Q Consensus 118 l~~~dLFsG~Gg~s~Gl~~a-G~~~~~~a~e~d~~a~~ty~~N~p~-----~~~~~~di~~~~~~~~~~~~~~~~~~~p~ 191 (620)
-+++|+|||.||.++-+... |-.-.++|+|+++..++..+.|... ..+...|...+.. . .
T Consensus 239 ~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~-------------~-~ 304 (431)
T PRK14903 239 LRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTE-------------Y-V 304 (431)
T ss_pred CEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhh-------------h-h
Confidence 47999999999998777653 1112589999999999999888542 2334445443310 0 1
Q ss_pred CCccceEEecCCCCccccccccchhhhc---ccccch---HHHHH-HHhhhcCCcEEEEccccccccccchhHHHHHH
Q psy12304 192 KHEVDLIVAGPPCQGFSQLNRARELEKS---KLKNGL---VFTFL-SFCDLFQPKYIILENVTGLVHFNKNEILQCIF 262 (620)
Q Consensus 192 ~~~vD~i~gGpPCQ~fS~~~~~~~~~~~---d~r~~L---~~~~~-~~i~~~~P~~~v~ENV~gl~~~~~~~~~~~i~ 262 (620)
.+.+|.|+.-+||.++-...+....... .....| -.+.+ ...+.++|.-.++=-...+........++.++
T Consensus 305 ~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~vv~~fl 382 (431)
T PRK14903 305 QDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTKEENTEVVKRFV 382 (431)
T ss_pred hccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhCHHHHHHHH
Confidence 2469999999999888765432110000 000111 12222 33455688766655555554444334444433
No 71
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=95.64 E-value=0.014 Score=60.42 Aligned_cols=78 Identities=23% Similarity=0.297 Sum_probs=55.9
Q ss_pred ceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcCCCcccccchHHHHHHhhcccccccCcCCCCCCccceE
Q psy12304 119 KCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQECSVIQDDCNLVLKSLLKGHTQHKGVSLPQKHEVDLI 198 (620)
Q Consensus 119 ~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p~~~~~~~di~~~~~~~~~~~~~~~~~~~p~~~~vD~i 198 (620)
+++||++|.|.+++++...+-.-.++|+|+++.|+++=+.|-....+ .++..+ .++. ...+ .+.+|+|
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l--~~~~~~-----~~dl---f~~~--~~~fDlI 180 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGL--VRVLVV-----QSDL---FEPL--RGKFDLI 180 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCC--ccEEEE-----eeec---cccc--CCceeEE
Confidence 89999999999999999987633799999999999999888643321 111111 0110 1122 3489999
Q ss_pred EecCCCCccc
Q psy12304 199 VAGPPCQGFS 208 (620)
Q Consensus 199 ~gGpPCQ~fS 208 (620)
+.-||==+.+
T Consensus 181 VsNPPYip~~ 190 (280)
T COG2890 181 VSNPPYIPAE 190 (280)
T ss_pred EeCCCCCCCc
Confidence 9999987777
No 72
>PRK03612 spermidine synthase; Provisional
Probab=95.54 E-value=0.26 Score=55.65 Aligned_cols=148 Identities=18% Similarity=0.166 Sum_probs=98.6
Q ss_pred CcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhc------------CCCcccccchHHHHHHhhcccccc
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANF------------QECSVIQDDCNLVLKSLLKGHTQH 184 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~------------p~~~~~~~di~~~~~~~~~~~~~~ 184 (620)
+-+++++-+|.|++..-+...+-.+-+.++|+|+..++.-+.|+ |...++.+|..+.++.
T Consensus 298 ~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~-------- 369 (521)
T PRK03612 298 PRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRK-------- 369 (521)
T ss_pred CCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHh--------
Confidence 34799999999999987776542256899999999999988742 4455667777765432
Q ss_pred cCcCCCCCCccceEEecCCCCccccccccchhhhcccccchH-HHHHH-HhhhcCCcEEEEccccccccccchhHHHHHH
Q psy12304 185 KGVSLPQKHEVDLIVAGPPCQGFSQLNRARELEKSKLKNGLV-FTFLS-FCDLFQPKYIILENVTGLVHFNKNEILQCIF 262 (620)
Q Consensus 185 ~~~~~p~~~~vD~i~gGpPCQ~fS~~~~~~~~~~~d~r~~L~-~~~~~-~i~~~~P~~~v~ENV~gl~~~~~~~~~~~i~ 262 (620)
. .+.+|+|+..+|-...... +.|+ .++++ +-+.++|.-+++=|...-. ...+.+..+.
T Consensus 370 ----~--~~~fDvIi~D~~~~~~~~~------------~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~--~~~~~~~~i~ 429 (521)
T PRK03612 370 ----L--AEKFDVIIVDLPDPSNPAL------------GKLYSVEFYRLLKRRLAPDGLLVVQSTSPY--FAPKAFWSIE 429 (521)
T ss_pred ----C--CCCCCEEEEeCCCCCCcch------------hccchHHHHHHHHHhcCCCeEEEEecCCcc--cchHHHHHHH
Confidence 1 2378999998774321111 1121 23443 3456799988877764322 1245678899
Q ss_pred HHHHcCCCEEEEEEEecCCCCCcccccEEEEEEec
Q psy12304 263 HCLLKMNYQVTFDVLQSGNYGVAQSRNRVVILASK 297 (620)
Q Consensus 263 ~~l~~~GY~v~~~~l~A~~yGvPQ~R~R~fivg~~ 297 (620)
+.|.+.|..+.....+--.|| .--|++|++
T Consensus 430 ~~l~~~gf~v~~~~~~vps~g-----~w~f~~as~ 459 (521)
T PRK03612 430 ATLEAAGLATTPYHVNVPSFG-----EWGFVLAGA 459 (521)
T ss_pred HHHHHcCCEEEEEEeCCCCcc-----hhHHHeeeC
Confidence 999999987666666656664 566777765
No 73
>PRK14968 putative methyltransferase; Provisional
Probab=95.45 E-value=0.084 Score=50.54 Aligned_cols=71 Identities=18% Similarity=0.227 Sum_probs=50.4
Q ss_pred cceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcCC-------CcccccchHHHHHHhhcccccccCcCCC
Q psy12304 118 LKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQE-------CSVIQDDCNLVLKSLLKGHTQHKGVSLP 190 (620)
Q Consensus 118 l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p~-------~~~~~~di~~~~~~~~~~~~~~~~~~~p 190 (620)
-+++|+.||.|.++..+...|. -+.++|+++.+.+..+.|... ...+..|.. ..++
T Consensus 25 ~~vLd~G~G~G~~~~~l~~~~~--~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~---------------~~~~ 87 (188)
T PRK14968 25 DRVLEVGTGSGIVAIVAAKNGK--KVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLF---------------EPFR 87 (188)
T ss_pred CEEEEEccccCHHHHHHHhhcc--eEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccc---------------cccc
Confidence 3799999999999999988875 478999999999888777521 222223321 1122
Q ss_pred CCCccceEEecCCCCc
Q psy12304 191 QKHEVDLIVAGPPCQG 206 (620)
Q Consensus 191 ~~~~vD~i~gGpPCQ~ 206 (620)
.+.+|+|+..+|+..
T Consensus 88 -~~~~d~vi~n~p~~~ 102 (188)
T PRK14968 88 -GDKFDVILFNPPYLP 102 (188)
T ss_pred -ccCceEEEECCCcCC
Confidence 226999999999744
No 74
>PRK01581 speE spermidine synthase; Validated
Probab=95.40 E-value=0.59 Score=49.82 Aligned_cols=151 Identities=15% Similarity=0.076 Sum_probs=96.7
Q ss_pred CcceecccccccHHHHHHHhc-CCCccEEEEcCchhHHHHHHHh------------cCCCcccccchHHHHHHhhccccc
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQA-GVAKPCWSVELERSEAASYDAN------------FQECSVIQDDCNLVLKSLLKGHTQ 183 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~a-G~~~~~~a~e~d~~a~~ty~~N------------~p~~~~~~~di~~~~~~~~~~~~~ 183 (620)
+-++|++=+|.|+....+..- +. +-+.+||+|+..++.-+.. -|...++.+|..+++..
T Consensus 151 PkrVLIIGgGdG~tlrelLk~~~v-~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~------- 222 (374)
T PRK01581 151 PKRVLILGGGDGLALREVLKYETV-LHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSS------- 222 (374)
T ss_pred CCEEEEECCCHHHHHHHHHhcCCC-CeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHh-------
Confidence 348999999988866555543 44 5688999999988876641 23445566777766432
Q ss_pred ccCcCCCCCCccceEEecCCCCccccccccchhhhcccccchH-HHHHHH-hhhcCCcEEEEccccccccccchhHHHHH
Q psy12304 184 HKGVSLPQKHEVDLIVAGPPCQGFSQLNRARELEKSKLKNGLV-FTFLSF-CDLFQPKYIILENVTGLVHFNKNEILQCI 261 (620)
Q Consensus 184 ~~~~~~p~~~~vD~i~gGpPCQ~fS~~~~~~~~~~~d~r~~L~-~~~~~~-i~~~~P~~~v~ENV~gl~~~~~~~~~~~i 261 (620)
..+.+|+|+..+| .+. +. ..+.|+ .+|++. -+.++|.-+++=+...... ....+..+
T Consensus 223 -------~~~~YDVIIvDl~-DP~---~~--------~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~~--~~~~~~~i 281 (374)
T PRK01581 223 -------PSSLYDVIIIDFP-DPA---TE--------LLSTLYTSELFARIATFLTEDGAFVCQSNSPAD--APLVYWSI 281 (374)
T ss_pred -------cCCCccEEEEcCC-Ccc---cc--------chhhhhHHHHHHHHHHhcCCCcEEEEecCChhh--hHHHHHHH
Confidence 1246899999865 111 10 112233 344444 4567999876555433221 23455668
Q ss_pred HHHHHcCCCEEEEEEEecCCCCCcccccEEEEEEecCCC
Q psy12304 262 FHCLLKMNYQVTFDVLQSGNYGVAQSRNRVVILASKPGY 300 (620)
Q Consensus 262 ~~~l~~~GY~v~~~~l~A~~yGvPQ~R~R~fivg~~~~~ 300 (620)
.+.|.+.|..+.......-.||.. -.|.+|++...
T Consensus 282 ~~tL~~af~~v~~y~t~vPsyg~~----WgF~~as~~~~ 316 (374)
T PRK01581 282 GNTIEHAGLTVKSYHTIVPSFGTD----WGFHIAANSAY 316 (374)
T ss_pred HHHHHHhCCceEEEEEecCCCCCc----eEEEEEeCCcc
Confidence 889999999988777766677652 88999987543
No 75
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=95.39 E-value=0.03 Score=56.34 Aligned_cols=160 Identities=24% Similarity=0.201 Sum_probs=88.7
Q ss_pred CcceecccccccHHHHHHHhc-CCCccEEEEcCchhHHHHHHHhcC------CCcccccchHHHHHHhhcccccccCcCC
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQA-GVAKPCWSVELERSEAASYDANFQ------ECSVIQDDCNLVLKSLLKGHTQHKGVSL 189 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~a-G~~~~~~a~e~d~~a~~ty~~N~p------~~~~~~~di~~~~~~~~~~~~~~~~~~~ 189 (620)
.-+++||.||+|.+++-+.+- .- .-+.+||+++.+.+--+.|.. ...++++|+..+.+. .
T Consensus 45 ~~~IlDlGaG~G~l~L~la~r~~~-a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~------------~ 111 (248)
T COG4123 45 KGRILDLGAGNGALGLLLAQRTEK-AKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKA------------L 111 (248)
T ss_pred CCeEEEecCCcCHHHHHHhccCCC-CcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhc------------c
Confidence 568999999999999988874 43 347899999988777666642 245778888876432 1
Q ss_pred CCCCccceEEecCCCCccccc-cccchhh-hcccccchHHHHHHHhhh-cCCcEEEEccccccccccchhHHHHHHHHHH
Q psy12304 190 PQKHEVDLIVAGPPCQGFSQL-NRARELE-KSKLKNGLVFTFLSFCDL-FQPKYIILENVTGLVHFNKNEILQCIFHCLL 266 (620)
Q Consensus 190 p~~~~vD~i~gGpPCQ~fS~~-~~~~~~~-~~d~r~~L~~~~~~~i~~-~~P~~~v~ENV~gl~~~~~~~~~~~i~~~l~ 266 (620)
....+|+|+.-||==.--.. +....+. ..-.-...+.++++.... ++|.-.+. |+. .-+-+..+++.|.
T Consensus 112 -~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~-----~V~--r~erl~ei~~~l~ 183 (248)
T COG4123 112 -VFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLA-----FVH--RPERLAEIIELLK 183 (248)
T ss_pred -cccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEE-----EEe--cHHHHHHHHHHHH
Confidence 22369999999993211111 1101110 001112234455554433 35543221 111 1134567788888
Q ss_pred cCCCEEEEEEEecCCCCCcccccEEEEEEecCC
Q psy12304 267 KMNYQVTFDVLQSGNYGVAQSRNRVVILASKPG 299 (620)
Q Consensus 267 ~~GY~v~~~~l~A~~yGvPQ~R~R~fivg~~~~ 299 (620)
+++........-...=|- .=.|+++-|.+.+
T Consensus 184 ~~~~~~k~i~~V~p~~~k--~A~~vLv~~~k~~ 214 (248)
T COG4123 184 SYNLEPKRIQFVYPKIGK--AANRVLVEAIKGG 214 (248)
T ss_pred hcCCCceEEEEecCCCCC--cceEEEEEEecCC
Confidence 877766544332222221 2236666666554
No 76
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=95.39 E-value=0.059 Score=59.25 Aligned_cols=87 Identities=14% Similarity=0.216 Sum_probs=56.0
Q ss_pred cceecccccccHHHHHHHh-cCCCccEEEEcCchhHHHHHHHhcCCCcccccchHHHHHHhhcccccccCcCCCCCCccc
Q psy12304 118 LKCLDLFSGCGGLMEGLCQ-AGVAKPCWSVELERSEAASYDANFQECSVIQDDCNLVLKSLLKGHTQHKGVSLPQKHEVD 196 (620)
Q Consensus 118 l~~~dLFsG~Gg~s~Gl~~-aG~~~~~~a~e~d~~a~~ty~~N~p~~~~~~~di~~~~~~~~~~~~~~~~~~~p~~~~vD 196 (620)
-+++|++||.||.++-+.+ .+- -.++|+|+++..++..+.|.....+- ..+.. ..++... .......+.+|
T Consensus 240 ~~VLDlcag~G~kt~~la~~~~~-~~v~a~D~~~~~l~~~~~n~~r~g~~-~~v~~-----~~~d~~~-~~~~~~~~~fD 311 (426)
T TIGR00563 240 ETILDACAAPGGKTTHILELAPQ-AQVVALDIHEHRLKRVYENLKRLGLT-IKAET-----KDGDGRG-PSQWAENEQFD 311 (426)
T ss_pred CeEEEeCCCccHHHHHHHHHcCC-CeEEEEeCCHHHHHHHHHHHHHcCCC-eEEEE-----ecccccc-ccccccccccC
Confidence 5899999999999987766 331 35899999999999998886432110 00000 0111100 00011234799
Q ss_pred eEEecCCCCccccccc
Q psy12304 197 LIVAGPPCQGFSQLNR 212 (620)
Q Consensus 197 ~i~gGpPCQ~fS~~~~ 212 (620)
.|+..+||.|+....+
T Consensus 312 ~VllDaPcSg~G~~~~ 327 (426)
T TIGR00563 312 RILLDAPCSATGVIRR 327 (426)
T ss_pred EEEEcCCCCCCccccc
Confidence 9999999999987654
No 77
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=95.33 E-value=0.028 Score=58.03 Aligned_cols=76 Identities=30% Similarity=0.398 Sum_probs=54.1
Q ss_pred cceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcC-------CCcccccchHHHHHHhhcccccccCcCCC
Q psy12304 118 LKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQ-------ECSVIQDDCNLVLKSLLKGHTQHKGVSLP 190 (620)
Q Consensus 118 l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p-------~~~~~~~di~~~~~~~~~~~~~~~~~~~p 190 (620)
-++|||||=.||+|+....+|. .-+.+||.++.|++.-+.|+- ....+.+|+.+.++.+.
T Consensus 125 krvLnlFsYTGgfsv~Aa~gGA-~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~------------ 191 (286)
T PF10672_consen 125 KRVLNLFSYTGGFSVAAAAGGA-KEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLK------------ 191 (286)
T ss_dssp CEEEEET-TTTHHHHHHHHTTE-SEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHH------------
T ss_pred CceEEecCCCCHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHh------------
Confidence 3899999999999999888997 668899999999988877741 22356678887766532
Q ss_pred CCCccceEEecCCCCccc
Q psy12304 191 QKHEVDLIVAGPPCQGFS 208 (620)
Q Consensus 191 ~~~~vD~i~gGpPCQ~fS 208 (620)
..+.+|+|+.-|| .|+
T Consensus 192 ~~~~fD~IIlDPP--sF~ 207 (286)
T PF10672_consen 192 KGGRFDLIILDPP--SFA 207 (286)
T ss_dssp HTT-EEEEEE--S--SEE
T ss_pred cCCCCCEEEECCC--CCC
Confidence 1247999999999 554
No 78
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=95.24 E-value=0.013 Score=62.75 Aligned_cols=83 Identities=22% Similarity=0.348 Sum_probs=44.4
Q ss_pred ceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhc-----CCCcccccchHHHHHHhhcccccccCcCCC-CC
Q psy12304 119 KCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANF-----QECSVIQDDCNLVLKSLLKGHTQHKGVSLP-QK 192 (620)
Q Consensus 119 ~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~-----p~~~~~~~di~~~~~~~~~~~~~~~~~~~p-~~ 192 (620)
+++|||||+|.+|+-|...+ +-+.|+|+++.|++.-+.|. .++..+.+++.++...+...........+. ..
T Consensus 199 ~vlDlycG~G~fsl~la~~~--~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 276 (352)
T PF05958_consen 199 DVLDLYCGVGTFSLPLAKKA--KKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAEDFAKALAKAREFNRLKGIDLKS 276 (352)
T ss_dssp EEEEES-TTTCCHHHHHCCS--SEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHHCCCHHCCS-GGTTGGGS-GGC
T ss_pred cEEEEeecCCHHHHHHHhhC--CeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccchhHHHHhhHHHHhhhhhhhhh
Confidence 68999999999999997655 45899999999887766663 233444555544322211000000000010 11
Q ss_pred CccceEEecCC
Q psy12304 193 HEVDLIVAGPP 203 (620)
Q Consensus 193 ~~vD~i~gGpP 203 (620)
..+|+|+.-||
T Consensus 277 ~~~d~vilDPP 287 (352)
T PF05958_consen 277 FKFDAVILDPP 287 (352)
T ss_dssp TTESEEEE---
T ss_pred cCCCEEEEcCC
Confidence 25799999999
No 79
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=95.16 E-value=0.036 Score=53.30 Aligned_cols=101 Identities=26% Similarity=0.357 Sum_probs=59.0
Q ss_pred cceecccccccHHHHHHHhcCCCcc---------EEEEcCchhHHHHHHHhcCCCcc------cccchHHHHHHhhcccc
Q psy12304 118 LKCLDLFSGCGGLMEGLCQAGVAKP---------CWSVELERSEAASYDANFQECSV------IQDDCNLVLKSLLKGHT 182 (620)
Q Consensus 118 l~~~dLFsG~Gg~s~Gl~~aG~~~~---------~~a~e~d~~a~~ty~~N~p~~~~------~~~di~~~~~~~~~~~~ 182 (620)
-.++|-|||.|++-+=....+.... .+++|+|+.+++.-+.|.....+ ...|..
T Consensus 30 ~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~----------- 98 (179)
T PF01170_consen 30 DVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDAR----------- 98 (179)
T ss_dssp S-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GG-----------
T ss_pred CEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchh-----------
Confidence 4799999999998743332222123 78999999999998888643221 122332
Q ss_pred cccCcCCC-CCCccceEEecCCCCccccccccchhhhcccccchHHHHHHHhhh-cCCcEEE
Q psy12304 183 QHKGVSLP-QKHEVDLIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLSFCDL-FQPKYII 242 (620)
Q Consensus 183 ~~~~~~~p-~~~~vD~i~gGpPCQ~fS~~~~~~~~~~~d~r~~L~~~~~~~i~~-~~P~~~v 242 (620)
.++ ..+.+|+|+.-|| .|..-+. ......|+..+++.+.. ++|..++
T Consensus 99 -----~l~~~~~~~d~IvtnPP------yG~r~~~--~~~~~~ly~~~~~~~~~~l~~~~v~ 147 (179)
T PF01170_consen 99 -----ELPLPDGSVDAIVTNPP------YGRRLGS--KKDLEKLYRQFLRELKRVLKPRAVF 147 (179)
T ss_dssp -----GGGGTTSBSCEEEEE--------STTSHCH--HHHHHHHHHHHHHHHHCHSTTCEEE
T ss_pred -----hcccccCCCCEEEECcc------hhhhccC--HHHHHHHHHHHHHHHHHHCCCCEEE
Confidence 233 3468999999999 3331111 11225678888877666 6774433
No 80
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=95.08 E-value=0.059 Score=55.84 Aligned_cols=76 Identities=24% Similarity=0.305 Sum_probs=54.3
Q ss_pred cceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcCC------CcccccchHHHHHHhhcccccccCcCCCC
Q psy12304 118 LKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQE------CSVIQDDCNLVLKSLLKGHTQHKGVSLPQ 191 (620)
Q Consensus 118 l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p~------~~~~~~di~~~~~~~~~~~~~~~~~~~p~ 191 (620)
.+++|++||.|.+++.+...+-..-+.++|+++.|++.-+.|... ..++.+|+.+ .++
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~---------------~~~- 179 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFE---------------PLA- 179 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhc---------------cCc-
Confidence 479999999999999988754212588999999999998887421 2233344321 122
Q ss_pred CCccceEEecCCCCcccc
Q psy12304 192 KHEVDLIVAGPPCQGFSQ 209 (620)
Q Consensus 192 ~~~vD~i~gGpPCQ~fS~ 209 (620)
...+|+|+.-||.-..+.
T Consensus 180 ~~~fDlIvsNPPyi~~~~ 197 (284)
T TIGR00536 180 GQKIDIIVSNPPYIDEED 197 (284)
T ss_pred CCCccEEEECCCCCCcch
Confidence 126999999999987764
No 81
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=94.97 E-value=0.057 Score=46.98 Aligned_cols=68 Identities=19% Similarity=0.235 Sum_probs=51.5
Q ss_pred cceecccccccHHHHHHHh--cCCCccEEEEcCchhHHHHHHHhc------CCCcccccchHHHHHHhhcccccccCcCC
Q psy12304 118 LKCLDLFSGCGGLMEGLCQ--AGVAKPCWSVELERSEAASYDANF------QECSVIQDDCNLVLKSLLKGHTQHKGVSL 189 (620)
Q Consensus 118 l~~~dLFsG~Gg~s~Gl~~--aG~~~~~~a~e~d~~a~~ty~~N~------p~~~~~~~di~~~~~~~~~~~~~~~~~~~ 189 (620)
-+++||-||.|.+++-+.+ .|. + +.++|+++.+++..+.|. ++..++++|+ .. ..
T Consensus 3 ~~vLDlGcG~G~~~~~l~~~~~~~-~-v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~--------------~~ 65 (112)
T PF12847_consen 3 GRVLDLGCGTGRLSIALARLFPGA-R-VVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-EF--------------DP 65 (112)
T ss_dssp CEEEEETTTTSHHHHHHHHHHTTS-E-EEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HG--------------GT
T ss_pred CEEEEEcCcCCHHHHHHHhcCCCC-E-EEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-cc--------------Cc
Confidence 4789999999999999998 776 5 899999999999999988 3344556666 21 01
Q ss_pred CCCCccceEEecC
Q psy12304 190 PQKHEVDLIVAGP 202 (620)
Q Consensus 190 p~~~~vD~i~gGp 202 (620)
...+++|+|+...
T Consensus 66 ~~~~~~D~v~~~~ 78 (112)
T PF12847_consen 66 DFLEPFDLVICSG 78 (112)
T ss_dssp TTSSCEEEEEECS
T ss_pred ccCCCCCEEEECC
Confidence 1234689888766
No 82
>KOG1827|consensus
Probab=94.96 E-value=0.018 Score=64.35 Aligned_cols=79 Identities=18% Similarity=0.230 Sum_probs=57.5
Q ss_pred EEEEEEEeeccCCCCCCccccCCCeEEecCceeeeccccccceEEEEEeCCC--CChhHhhhcCCCCCCeEEEEEEEecC
Q psy12304 2 KAHVQWLVRPNDTILGDKIQFDNSTLFLTNACESIDLSVIKKTVCVDFVTND--SSEEEILDNEHEEKDETIYTEYYRKT 79 (620)
Q Consensus 2 ~~~v~wfyRped~~~~~~~~~d~~eLf~Sd~~~~v~~~~I~gkC~V~~~~~~--~~i~~~~~~~~~~pd~Fy~~~~y~~~ 79 (620)
++.++|||||+.|.--...-.-.+|+|.|..+.+.+++.|+|+|+|.+++.- ...+.+.. .+-|-|...|+ .
T Consensus 225 ~~~~~w~~rP~~T~H~a~r~F~k~Evfkt~~~~~~~~q~l~g~c~v~~~~~yi~~~p~~ls~-----~dv~lcesRyn-~ 298 (629)
T KOG1827|consen 225 WPQGCWIYRPEETVHRADRKFYKQEVFKTSLYRDDLVQRLLGKCYVMKPTEYISGDPENLSE-----EDVFLCESRYN-E 298 (629)
T ss_pred ccceeEeeCCccCccccccchhcccceecccccccHHHHhhcceEEeehhHhhhcCcccccc-----cceeeEEeeec-c
Confidence 4678999999999732222344689999999999999999999999998854 22222222 35666666688 7
Q ss_pred CCcceec
Q psy12304 80 KDKHFVQ 86 (620)
Q Consensus 80 ~~~~~~~ 86 (620)
+.+.|..
T Consensus 299 ~~K~f~k 305 (629)
T KOG1827|consen 299 QLKKFNK 305 (629)
T ss_pred chhhhcc
Confidence 7776665
No 83
>KOG2730|consensus
Probab=94.91 E-value=0.058 Score=52.65 Aligned_cols=80 Identities=23% Similarity=0.279 Sum_probs=60.0
Q ss_pred ceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhc-----CC-CcccccchHHHHHHhhcccccccCcCCCCC
Q psy12304 119 KCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANF-----QE-CSVIQDDCNLVLKSLLKGHTQHKGVSLPQK 192 (620)
Q Consensus 119 ~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~-----p~-~~~~~~di~~~~~~~~~~~~~~~~~~~p~~ 192 (620)
.++|-|||+||-..=|..-|. .+.++|+|+.-+..-++|. |+ ...+++|+.++.+.+.. .+
T Consensus 97 ~iidaf~g~gGntiqfa~~~~--~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~-----------~K 163 (263)
T KOG2730|consen 97 VIVDAFCGVGGNTIQFALQGP--YVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKA-----------DK 163 (263)
T ss_pred hhhhhhhcCCchHHHHHHhCC--eEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhh-----------hh
Confidence 589999999999999988886 6889999999888888874 22 34578888777554321 11
Q ss_pred CccceEEecCCCCcccccc
Q psy12304 193 HEVDLIVAGPPCQGFSQLN 211 (620)
Q Consensus 193 ~~vD~i~gGpPCQ~fS~~~ 211 (620)
.-+|++.++||--|-|.+.
T Consensus 164 ~~~~~vf~sppwggp~y~~ 182 (263)
T KOG2730|consen 164 IKYDCVFLSPPWGGPSYLR 182 (263)
T ss_pred heeeeeecCCCCCCcchhh
Confidence 2478999999976666554
No 84
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=94.85 E-value=0.37 Score=46.45 Aligned_cols=43 Identities=12% Similarity=0.007 Sum_probs=35.5
Q ss_pred cceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhc
Q psy12304 118 LKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANF 160 (620)
Q Consensus 118 l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~ 160 (620)
-++||+.||.|.+++.+...+-..-+.++|+++.+++..+.|.
T Consensus 33 ~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~ 75 (187)
T PRK08287 33 KHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENR 75 (187)
T ss_pred CEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH
Confidence 4799999999999999887543124889999999998888775
No 85
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=94.73 E-value=0.041 Score=59.55 Aligned_cols=72 Identities=15% Similarity=0.239 Sum_probs=50.1
Q ss_pred ceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcCC----CcccccchHHHHHHhhcccccccCcCCCCCCc
Q psy12304 119 KCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQE----CSVIQDDCNLVLKSLLKGHTQHKGVSLPQKHE 194 (620)
Q Consensus 119 ~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p~----~~~~~~di~~~~~~~~~~~~~~~~~~~p~~~~ 194 (620)
+++|++||.|.+++.+....-...+.++|+++.|++.-+.|... ..++.+|+.+. ..+..+.
T Consensus 254 rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~--------------~l~~~~~ 319 (423)
T PRK14966 254 RVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDT--------------DMPSEGK 319 (423)
T ss_pred EEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhcc--------------ccccCCC
Confidence 79999999999998887542213588999999999999888532 22333443211 1222347
Q ss_pred cceEEecCCC
Q psy12304 195 VDLIVAGPPC 204 (620)
Q Consensus 195 vD~i~gGpPC 204 (620)
+|+|+.-||=
T Consensus 320 FDLIVSNPPY 329 (423)
T PRK14966 320 WDIIVSNPPY 329 (423)
T ss_pred ccEEEECCCC
Confidence 9999999983
No 86
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=94.25 E-value=1.6 Score=44.85 Aligned_cols=147 Identities=12% Similarity=0.096 Sum_probs=89.6
Q ss_pred ceecccccccHHHHHHHhcC-CCccEEEEcCchhHHHHHHHhcCC---------CcccccchHHHHHHhhcccccccCcC
Q psy12304 119 KCLDLFSGCGGLMEGLCQAG-VAKPCWSVELERSEAASYDANFQE---------CSVIQDDCNLVLKSLLKGHTQHKGVS 188 (620)
Q Consensus 119 ~~~dLFsG~Gg~s~Gl~~aG-~~~~~~a~e~d~~a~~ty~~N~p~---------~~~~~~di~~~~~~~~~~~~~~~~~~ 188 (620)
++|++.+|.|++..-+...+ . .-+.++|+|+..++..+.+++. ..+..+|..+.++.
T Consensus 75 ~VL~iG~G~G~~~~~ll~~~~~-~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~------------ 141 (270)
T TIGR00417 75 HVLVIGGGDGGVLREVLKHKSV-EKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLAD------------ 141 (270)
T ss_pred EEEEEcCCchHHHHHHHhCCCc-ceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHh------------
Confidence 89999999999887776654 4 5688999999998888877643 22333454444321
Q ss_pred CCCCCccceEEecCCCCccccccccchhhhcccccchHHHHHH-HhhhcCCcEEEEccccccccccchhHHHHHHHHHHc
Q psy12304 189 LPQKHEVDLIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLS-FCDLFQPKYIILENVTGLVHFNKNEILQCIFHCLLK 267 (620)
Q Consensus 189 ~p~~~~vD~i~gGpPCQ~fS~~~~~~~~~~~d~r~~L~~~~~~-~i~~~~P~~~v~ENV~gl~~~~~~~~~~~i~~~l~~ 267 (620)
. .+.+|+|+..++-. .+.. .+-...++++ +.+.++|.-+++=|.....- ....+..+.+.|.+
T Consensus 142 ~--~~~yDvIi~D~~~~-~~~~-----------~~l~~~ef~~~~~~~L~pgG~lv~~~~~~~~--~~~~~~~~~~tl~~ 205 (270)
T TIGR00417 142 T--ENTFDVIIVDSTDP-VGPA-----------ETLFTKEFYELLKKALNEDGIFVAQSESPWI--QLELITDLKRDVKE 205 (270)
T ss_pred C--CCCccEEEEeCCCC-CCcc-----------cchhHHHHHHHHHHHhCCCcEEEEcCCCccc--CHHHHHHHHHHHHH
Confidence 1 24789999875521 1110 1111234443 34568999888777554321 24567777777777
Q ss_pred CCCEEEEEEEecCCCCCcccccEEEEEEec
Q psy12304 268 MNYQVTFDVLQSGNYGVAQSRNRVVILASK 297 (620)
Q Consensus 268 ~GY~v~~~~l~A~~yGvPQ~R~R~fivg~~ 297 (620)
..=.+.......-.|+.. .-.|++|++
T Consensus 206 ~F~~v~~~~~~vp~~~~g---~~~~~~as~ 232 (270)
T TIGR00417 206 AFPITEYYTANIPTYPSG---LWTFTIGSK 232 (270)
T ss_pred HCCCeEEEEEEcCccccc---hhEEEEEEC
Confidence 654555544444444322 247888876
No 87
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=94.12 E-value=0.071 Score=54.42 Aligned_cols=67 Identities=24% Similarity=0.363 Sum_probs=51.8
Q ss_pred cceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcC---CCcccccchHHHHHHhhcccccccCcCCCCCCc
Q psy12304 118 LKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQ---ECSVIQDDCNLVLKSLLKGHTQHKGVSLPQKHE 194 (620)
Q Consensus 118 l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p---~~~~~~~di~~~~~~~~~~~~~~~~~~~p~~~~ 194 (620)
-+++|+.||.|.++..+.+.+. -+.++|+|+..++..+.++. +..++++|+.++ .++ +
T Consensus 31 ~~VLEIG~G~G~lt~~L~~~~~--~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~--------------~~~---~ 91 (258)
T PRK14896 31 DPVLEIGPGKGALTDELAKRAK--KVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKV--------------DLP---E 91 (258)
T ss_pred CeEEEEeCccCHHHHHHHHhCC--EEEEEECCHHHHHHHHHHhccCCCEEEEEeccccC--------------Cch---h
Confidence 4799999999999999999864 48999999999999888764 344555565322 122 5
Q ss_pred cceEEecCC
Q psy12304 195 VDLIVAGPP 203 (620)
Q Consensus 195 vD~i~gGpP 203 (620)
+|.|++.+|
T Consensus 92 ~d~Vv~NlP 100 (258)
T PRK14896 92 FNKVVSNLP 100 (258)
T ss_pred ceEEEEcCC
Confidence 789999988
No 88
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=93.98 E-value=0.07 Score=54.91 Aligned_cols=69 Identities=26% Similarity=0.342 Sum_probs=52.6
Q ss_pred cceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhc--CCCcccccchHHHHHHhhcccccccCcCCCCCCcc
Q psy12304 118 LKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANF--QECSVIQDDCNLVLKSLLKGHTQHKGVSLPQKHEV 195 (620)
Q Consensus 118 l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~--p~~~~~~~di~~~~~~~~~~~~~~~~~~~p~~~~v 195 (620)
-+++|+-||.|.++..+...|. -+.|+|+|+.+++..+.|+ ++..++++|+.++ .++.. ..
T Consensus 44 ~~VLEiG~G~G~lt~~L~~~~~--~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~--------------~~~~~-~~ 106 (272)
T PRK00274 44 DNVLEIGPGLGALTEPLLERAA--KVTAVEIDRDLAPILAETFAEDNLTIIEGDALKV--------------DLSEL-QP 106 (272)
T ss_pred CeEEEeCCCccHHHHHHHHhCC--cEEEEECCHHHHHHHHHhhccCceEEEEChhhcC--------------CHHHc-Cc
Confidence 4799999999999999999875 4889999999999998887 3455666776543 11100 14
Q ss_pred ceEEecCC
Q psy12304 196 DLIVAGPP 203 (620)
Q Consensus 196 D~i~gGpP 203 (620)
|.|+|.+|
T Consensus 107 ~~vv~NlP 114 (272)
T PRK00274 107 LKVVANLP 114 (272)
T ss_pred ceEEEeCC
Confidence 78899988
No 89
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=93.58 E-value=0.52 Score=47.79 Aligned_cols=115 Identities=18% Similarity=0.252 Sum_probs=72.7
Q ss_pred CcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcCCCcccccchHHHHHHhhcccccccCcCCCCC-Ccc
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQECSVIQDDCNLVLKSLLKGHTQHKGVSLPQK-HEV 195 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p~~~~~~~di~~~~~~~~~~~~~~~~~~~p~~-~~v 195 (620)
.-+++|+.||.|.+++.+...|. ..+.++|+|+.+++.-+.|.....+ ...+ .++.. ..+
T Consensus 120 ~~~VLDiGcGsG~l~i~~~~~g~-~~v~giDis~~~l~~A~~n~~~~~~-~~~~-----------------~~~~~~~~f 180 (250)
T PRK00517 120 GKTVLDVGCGSGILAIAAAKLGA-KKVLAVDIDPQAVEAARENAELNGV-ELNV-----------------YLPQGDLKA 180 (250)
T ss_pred CCEEEEeCCcHHHHHHHHHHcCC-CeEEEEECCHHHHHHHHHHHHHcCC-CceE-----------------EEccCCCCc
Confidence 45899999999999999998887 4589999999999988888632211 0011 01110 158
Q ss_pred ceEEecCCCCccccccccchhhhcccccchHHHH-HHHhhhcCCcEEEEccccccccccchhHHHHHHHHHHcCCCEEEE
Q psy12304 196 DLIVAGPPCQGFSQLNRARELEKSKLKNGLVFTF-LSFCDLFQPKYIILENVTGLVHFNKNEILQCIFHCLLKMNYQVTF 274 (620)
Q Consensus 196 D~i~gGpPCQ~fS~~~~~~~~~~~d~r~~L~~~~-~~~i~~~~P~~~v~ENV~gl~~~~~~~~~~~i~~~l~~~GY~v~~ 274 (620)
|+|++... . . .+..+ -.+.+.++|.-.++ +.|+.. .....++..|.+.|+.+..
T Consensus 181 D~Vvani~--------~---~--------~~~~l~~~~~~~LkpgG~li--lsgi~~----~~~~~v~~~l~~~Gf~~~~ 235 (250)
T PRK00517 181 DVIVANIL--------A---N--------PLLELAPDLARLLKPGGRLI--LSGILE----EQADEVLEAYEEAGFTLDE 235 (250)
T ss_pred CEEEEcCc--------H---H--------HHHHHHHHHHHhcCCCcEEE--EEECcH----hhHHHHHHHHHHCCCEEEE
Confidence 88886421 0 0 11122 23456678865554 234442 2356778889999998754
Q ss_pred E
Q psy12304 275 D 275 (620)
Q Consensus 275 ~ 275 (620)
.
T Consensus 236 ~ 236 (250)
T PRK00517 236 V 236 (250)
T ss_pred E
Confidence 3
No 90
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=93.54 E-value=0.1 Score=53.11 Aligned_cols=53 Identities=23% Similarity=0.228 Sum_probs=43.3
Q ss_pred CcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcC---CCcccccchH
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQ---ECSVIQDDCN 171 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p---~~~~~~~di~ 171 (620)
.-+++|+.||.|.++..+.+.+- . +.++|+|+..++..+.++. +..+.++|+.
T Consensus 30 ~~~VLEiG~G~G~lt~~L~~~~~-~-v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~ 85 (253)
T TIGR00755 30 GDVVLEIGPGLGALTEPLLKRAK-K-VTAIEIDPRLAEILRKLLSLYERLEVIEGDAL 85 (253)
T ss_pred cCEEEEeCCCCCHHHHHHHHhCC-c-EEEEECCHHHHHHHHHHhCcCCcEEEEECchh
Confidence 34799999999999999999885 4 8999999999999988864 3445556654
No 91
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=93.40 E-value=0.73 Score=48.47 Aligned_cols=43 Identities=16% Similarity=0.156 Sum_probs=37.9
Q ss_pred CcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcC
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQ 161 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p 161 (620)
..++||+.||.|.+++-|...|. + +.++|+++.+++.-+.|.+
T Consensus 145 ~~~VLDlGcGtG~~a~~la~~g~-~-V~gvD~S~~ml~~A~~~~~ 187 (315)
T PLN02585 145 GVTVCDAGCGTGSLAIPLALEGA-I-VSASDISAAMVAEAERRAK 187 (315)
T ss_pred CCEEEEecCCCCHHHHHHHHCCC-E-EEEEECCHHHHHHHHHHHH
Confidence 46899999999999999999886 4 8899999999988877764
No 92
>KOG1227|consensus
Probab=93.37 E-value=0.037 Score=56.33 Aligned_cols=42 Identities=24% Similarity=0.282 Sum_probs=38.6
Q ss_pred cceecccccccHHHH-HHHhcCCCccEEEEcCchhHHHHHHHhc
Q psy12304 118 LKCLDLFSGCGGLME-GLCQAGVAKPCWSVELERSEAASYDANF 160 (620)
Q Consensus 118 l~~~dLFsG~Gg~s~-Gl~~aG~~~~~~a~e~d~~a~~ty~~N~ 160 (620)
-.++|||||+|=+.+ =+-.||. ++++|+|+++.+++.++.|-
T Consensus 196 eviVDLYAGIGYFTlpflV~agA-k~V~A~EwNp~svEaLrR~~ 238 (351)
T KOG1227|consen 196 EVIVDLYAGIGYFTLPFLVTAGA-KTVFACEWNPWSVEALRRNA 238 (351)
T ss_pred chhhhhhcccceEEeehhhccCc-cEEEEEecCHHHHHHHHHHH
Confidence 468999999999999 7778998 89999999999999999986
No 93
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=93.37 E-value=0.14 Score=54.50 Aligned_cols=68 Identities=22% Similarity=0.282 Sum_probs=47.4
Q ss_pred ceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcCC----CcccccchHHHHHHhhcccccccCcCCCCCCc
Q psy12304 119 KCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQE----CSVIQDDCNLVLKSLLKGHTQHKGVSLPQKHE 194 (620)
Q Consensus 119 ~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p~----~~~~~~di~~~~~~~~~~~~~~~~~~~p~~~~ 194 (620)
+++||.||.|.++..+...+-...+.++|+++.|++.-+.|... ..++..|+. ..+ .+.
T Consensus 199 ~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~---------------~~~--~~~ 261 (342)
T PRK09489 199 KVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVF---------------SDI--KGR 261 (342)
T ss_pred eEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccc---------------ccc--CCC
Confidence 79999999999998888754212488999999998877666432 122222321 111 357
Q ss_pred cceEEecCC
Q psy12304 195 VDLIVAGPP 203 (620)
Q Consensus 195 vD~i~gGpP 203 (620)
+|+|+..||
T Consensus 262 fDlIvsNPP 270 (342)
T PRK09489 262 FDMIISNPP 270 (342)
T ss_pred ccEEEECCC
Confidence 999999998
No 94
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=93.21 E-value=0.15 Score=53.00 Aligned_cols=67 Identities=27% Similarity=0.372 Sum_probs=51.9
Q ss_pred cceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhc------CCCcccccchHHHHHHhhcccccccCcCCCC
Q psy12304 118 LKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANF------QECSVIQDDCNLVLKSLLKGHTQHKGVSLPQ 191 (620)
Q Consensus 118 l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~------p~~~~~~~di~~~~~~~~~~~~~~~~~~~p~ 191 (620)
-+++|+-||.|.++.-+...+. -++|+|+|+.+++..+.|+ ++..++.+|+.++ .++
T Consensus 38 ~~VLEIG~G~G~LT~~Ll~~~~--~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~--------------~~~- 100 (294)
T PTZ00338 38 DTVLEIGPGTGNLTEKLLQLAK--KVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKT--------------EFP- 100 (294)
T ss_pred CEEEEecCchHHHHHHHHHhCC--cEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhh--------------ccc-
Confidence 4799999999999998888764 4899999999999888765 2345667776443 122
Q ss_pred CCccceEEecCC
Q psy12304 192 KHEVDLIVAGPP 203 (620)
Q Consensus 192 ~~~vD~i~gGpP 203 (620)
.+|++++.+|
T Consensus 101 --~~d~VvaNlP 110 (294)
T PTZ00338 101 --YFDVCVANVP 110 (294)
T ss_pred --ccCEEEecCC
Confidence 5789999888
No 95
>PRK10742 putative methyltransferase; Provisional
Probab=93.13 E-value=0.25 Score=49.71 Aligned_cols=73 Identities=16% Similarity=0.150 Sum_probs=54.1
Q ss_pred CCcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcCCC--------------cccccchHHHHHHhhccc
Q psy12304 116 TPLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQEC--------------SVIQDDCNLVLKSLLKGH 181 (620)
Q Consensus 116 ~~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p~~--------------~~~~~di~~~~~~~~~~~ 181 (620)
...++||+|||.|..++=+...|+ + +.++|.++.++...+.|.-.. .++++|..++++.
T Consensus 88 ~~p~VLD~TAGlG~Da~~las~G~-~-V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~----- 160 (250)
T PRK10742 88 YLPDVVDATAGLGRDAFVLASVGC-R-VRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTD----- 160 (250)
T ss_pred CCCEEEECCCCccHHHHHHHHcCC-E-EEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhh-----
Confidence 345899999999999999999998 6 999999999999888775432 1233454444321
Q ss_pred ccccCcCCCCCCccceEEecCCC
Q psy12304 182 TQHKGVSLPQKHEVDLIVAGPPC 204 (620)
Q Consensus 182 ~~~~~~~~p~~~~vD~i~gGpPC 204 (620)
.+ ..+|+|..-||=
T Consensus 161 -------~~--~~fDVVYlDPMf 174 (250)
T PRK10742 161 -------IT--PRPQVVYLDPMF 174 (250)
T ss_pred -------CC--CCCcEEEECCCC
Confidence 12 258999999993
No 96
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=93.10 E-value=0.12 Score=55.65 Aligned_cols=43 Identities=21% Similarity=0.049 Sum_probs=35.5
Q ss_pred cceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhc
Q psy12304 118 LKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANF 160 (620)
Q Consensus 118 l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~ 160 (620)
-+++||.||.|-+++.+...+-.--+.++|+++.|++.-+.|.
T Consensus 230 ~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~ 272 (378)
T PRK15001 230 GEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNV 272 (378)
T ss_pred CeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH
Confidence 3899999999999998887642125889999999998888775
No 97
>PRK00811 spermidine synthase; Provisional
Probab=93.07 E-value=1.5 Score=45.36 Aligned_cols=146 Identities=14% Similarity=0.136 Sum_probs=91.1
Q ss_pred CcceecccccccHHHHHHHhc-CCCccEEEEcCchhHHHHHHHhcC----------CCcccccchHHHHHHhhccccccc
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQA-GVAKPCWSVELERSEAASYDANFQ----------ECSVIQDDCNLVLKSLLKGHTQHK 185 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~a-G~~~~~~a~e~d~~a~~ty~~N~p----------~~~~~~~di~~~~~~~~~~~~~~~ 185 (620)
+-++|+|.+|.|++..-+... +. +-+.+||+|+..++..+.+++ ...++.+|...++..
T Consensus 77 p~~VL~iG~G~G~~~~~~l~~~~~-~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~--------- 146 (283)
T PRK00811 77 PKRVLIIGGGDGGTLREVLKHPSV-EKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAE--------- 146 (283)
T ss_pred CCEEEEEecCchHHHHHHHcCCCC-CEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhh---------
Confidence 347999999999998877664 65 568999999999988887764 234566777665421
Q ss_pred CcCCCCCCccceEEecCCCCccccccccchhhhcccccch-HHHHHH-HhhhcCCcEEEEccccccccccchhHHHHHHH
Q psy12304 186 GVSLPQKHEVDLIVAGPPCQGFSQLNRARELEKSKLKNGL-VFTFLS-FCDLFQPKYIILENVTGLVHFNKNEILQCIFH 263 (620)
Q Consensus 186 ~~~~p~~~~vD~i~gGpPCQ~fS~~~~~~~~~~~d~r~~L-~~~~~~-~i~~~~P~~~v~ENV~gl~~~~~~~~~~~i~~ 263 (620)
..+.+|+|+...+ .+++... .| -.+|++ +-+.++|.-+++=|+..... ....+..+.+
T Consensus 147 -----~~~~yDvIi~D~~-dp~~~~~------------~l~t~ef~~~~~~~L~~gGvlv~~~~~~~~--~~~~~~~i~~ 206 (283)
T PRK00811 147 -----TENSFDVIIVDST-DPVGPAE------------GLFTKEFYENCKRALKEDGIFVAQSGSPFY--QADEIKDMHR 206 (283)
T ss_pred -----CCCcccEEEECCC-CCCCchh------------hhhHHHHHHHHHHhcCCCcEEEEeCCCccc--CHHHHHHHHH
Confidence 1247899988643 2222111 11 123433 34567899888877654332 2356777888
Q ss_pred HHHcCCCEEEEEEEecCCCCCccc--ccEEEEEEec
Q psy12304 264 CLLKMNYQVTFDVLQSGNYGVAQS--RNRVVILASK 297 (620)
Q Consensus 264 ~l~~~GY~v~~~~l~A~~yGvPQ~--R~R~fivg~~ 297 (620)
.|.+..-.+...... +|.. -.-.|++|+.
T Consensus 207 tl~~~F~~v~~~~~~-----vp~~~~~~w~f~~as~ 237 (283)
T PRK00811 207 KLKEVFPIVRPYQAA-----IPTYPSGLWSFTFASK 237 (283)
T ss_pred HHHHHCCCEEEEEeE-----CCcccCchheeEEeec
Confidence 888765554443222 2332 3356777765
No 98
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=92.74 E-value=0.57 Score=51.98 Aligned_cols=134 Identities=13% Similarity=0.156 Sum_probs=78.4
Q ss_pred CcceecccccccHHHHHHHhc-CCCccEEEEcCchhHHHHHHHhcCC-----CcccccchHHHHHHhhcccccccCcCCC
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQA-GVAKPCWSVELERSEAASYDANFQE-----CSVIQDDCNLVLKSLLKGHTQHKGVSLP 190 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~a-G~~~~~~a~e~d~~a~~ty~~N~p~-----~~~~~~di~~~~~~~~~~~~~~~~~~~p 190 (620)
.-+|||+|||.||=+.-+.+. +-.-.++|+|+++.-++..+.|.-. +.+.+.|...+. ..+
T Consensus 114 g~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~------------~~~- 180 (470)
T PRK11933 114 PQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFG------------AAL- 180 (470)
T ss_pred CCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhh------------hhc-
Confidence 358999999999988777653 1112588999999999999988533 333444543321 112
Q ss_pred CCCccceEEecCCCCccccccccchhh----hcccc--cchHHHHH-HHhhhcCCcEEEEccccccccccchhHHHHHHH
Q psy12304 191 QKHEVDLIVAGPPCQGFSQLNRARELE----KSKLK--NGLVFTFL-SFCDLFQPKYIILENVTGLVHFNKNEILQCIFH 263 (620)
Q Consensus 191 ~~~~vD~i~gGpPCQ~fS~~~~~~~~~----~~d~r--~~L~~~~~-~~i~~~~P~~~v~ENV~gl~~~~~~~~~~~i~~ 263 (620)
++.+|.|..-.||.|.-...+..... .++.. ..+=.+++ ..++.++|--.++=-...+....+..++..+++
T Consensus 181 -~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~~eENE~vV~~~L~ 259 (470)
T PRK11933 181 -PETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLNREENQAVCLWLKE 259 (470)
T ss_pred -hhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCHHHHHHHHHHHHH
Confidence 24689999999999887765421110 00000 00001111 223456787777655555554444445555554
Q ss_pred H
Q psy12304 264 C 264 (620)
Q Consensus 264 ~ 264 (620)
.
T Consensus 260 ~ 260 (470)
T PRK11933 260 T 260 (470)
T ss_pred H
Confidence 3
No 99
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=92.57 E-value=1.9 Score=41.93 Aligned_cols=126 Identities=11% Similarity=0.180 Sum_probs=75.2
Q ss_pred cceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHh-----cCCCcccccchHHHHHHhhcccccccCcCCCCC
Q psy12304 118 LKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDAN-----FQECSVIQDDCNLVLKSLLKGHTQHKGVSLPQK 192 (620)
Q Consensus 118 l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N-----~p~~~~~~~di~~~~~~~~~~~~~~~~~~~p~~ 192 (620)
-++||+-||.|.++..+....-...+.++|+++..++.-+.| ..+..++++|+.++.... + ..
T Consensus 18 ~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~-----------~-~~ 85 (194)
T TIGR00091 18 PLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKF-----------F-PD 85 (194)
T ss_pred ceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhh-----------C-CC
Confidence 479999999999998888763223589999999876655443 334566778887654221 1 22
Q ss_pred CccceEEecCCCCccccccccchhhhcccccchHHHHHH-HhhhcCCcEEEEccccccccccchhHHHHHHHHHHcCC
Q psy12304 193 HEVDLIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLS-FCDLFQPKYIILENVTGLVHFNKNEILQCIFHCLLKMN 269 (620)
Q Consensus 193 ~~vD~i~gGpPCQ~fS~~~~~~~~~~~d~r~~L~~~~~~-~i~~~~P~~~v~ENV~gl~~~~~~~~~~~i~~~l~~~G 269 (620)
+.+|.|+.-+|..-+..... .+.-+...+++ +.+.++|.-.++ +.......+..+++.|...+
T Consensus 86 ~~~d~v~~~~pdpw~k~~h~--------~~r~~~~~~l~~~~r~LkpgG~l~------~~td~~~~~~~~~~~~~~~~ 149 (194)
T TIGR00091 86 GSLSKVFLNFPDPWPKKRHN--------KRRITQPHFLKEYANVLKKGGVIH------FKTDNEPLFEDMLKVLSEND 149 (194)
T ss_pred CceeEEEEECCCcCCCCCcc--------ccccCCHHHHHHHHHHhCCCCEEE------EEeCCHHHHHHHHHHHHhCC
Confidence 46899998887443322110 11111123333 344567765442 12223345777788887766
No 100
>KOG2904|consensus
Probab=92.54 E-value=0.27 Score=49.71 Aligned_cols=83 Identities=18% Similarity=0.305 Sum_probs=51.4
Q ss_pred CcceecccccccHHHHHHHh-cCCCccEEEEcCchhHHHHHHHhcCCCcccccchHHHHHHhhcccccccCcCCCCCCcc
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQ-AGVAKPCWSVELERSEAASYDANFQECSVIQDDCNLVLKSLLKGHTQHKGVSLPQKHEV 195 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~-aG~~~~~~a~e~d~~a~~ty~~N~p~~~~~~~di~~~~~~~~~~~~~~~~~~~p~~~~v 195 (620)
+..++|++||.|.+|+++.. .+ -.++.|+|.++.|+..-..|.....+. +-+. +....++++... ...+ .-|..
T Consensus 149 ~~~ildlgtGSGaIslsll~~L~-~~~v~AiD~S~~Ai~La~eN~qr~~l~-g~i~-v~~~~me~d~~~-~~~l-~~~~~ 223 (328)
T KOG2904|consen 149 HTHILDLGTGSGAISLSLLHGLP-QCTVTAIDVSKAAIKLAKENAQRLKLS-GRIE-VIHNIMESDASD-EHPL-LEGKI 223 (328)
T ss_pred cceEEEecCCccHHHHHHHhcCC-CceEEEEeccHHHHHHHHHHHHHHhhc-CceE-EEeccccccccc-cccc-ccCce
Confidence 34699999999999999875 34 357899999999999988885322111 0000 000011122111 1111 23689
Q ss_pred ceEEecCCC
Q psy12304 196 DLIVAGPPC 204 (620)
Q Consensus 196 D~i~gGpPC 204 (620)
|+|++-||-
T Consensus 224 dllvsNPPY 232 (328)
T KOG2904|consen 224 DLLVSNPPY 232 (328)
T ss_pred eEEecCCCc
Confidence 999999994
No 101
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=92.43 E-value=0.26 Score=48.78 Aligned_cols=73 Identities=18% Similarity=0.083 Sum_probs=48.8
Q ss_pred CcceecccccccHHHHHHHhcCC-CccEEEEcCchhHHHHHHHhcCC-----CcccccchHHHHHHhhcccccccCcCCC
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQAGV-AKPCWSVELERSEAASYDANFQE-----CSVIQDDCNLVLKSLLKGHTQHKGVSLP 190 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~aG~-~~~~~a~e~d~~a~~ty~~N~p~-----~~~~~~di~~~~~~~~~~~~~~~~~~~p 190 (620)
.-++||+.||.|.++.-|....- .-.++++|+++...+.-+.|... ..+..+|..+ ..+
T Consensus 78 ~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~---------------~~~ 142 (215)
T TIGR00080 78 GMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQ---------------GWE 142 (215)
T ss_pred cCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCccc---------------CCc
Confidence 35899999999999987776532 11389999999998877776532 2333344321 112
Q ss_pred CCCccceEEecCCC
Q psy12304 191 QKHEVDLIVAGPPC 204 (620)
Q Consensus 191 ~~~~vD~i~gGpPC 204 (620)
..+.+|+|+..+++
T Consensus 143 ~~~~fD~Ii~~~~~ 156 (215)
T TIGR00080 143 PLAPYDRIYVTAAG 156 (215)
T ss_pred ccCCCCEEEEcCCc
Confidence 23479999987665
No 102
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=92.43 E-value=0.28 Score=55.15 Aligned_cols=147 Identities=20% Similarity=0.300 Sum_probs=83.1
Q ss_pred CcceecccccccHHHHHHHhc--CCCccEEEEcCchhHHHHHHHhcCC------CcccccchHHHHHHhhcccccccCcC
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQA--GVAKPCWSVELERSEAASYDANFQE------CSVIQDDCNLVLKSLLKGHTQHKGVS 188 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~a--G~~~~~~a~e~d~~a~~ty~~N~p~------~~~~~~di~~~~~~~~~~~~~~~~~~ 188 (620)
..+++|++||.|.+++.+... +. .+.++|+++.|++.-+.|... ..++.+|+.+ .
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~--~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~---------------~ 201 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNA--NVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFE---------------N 201 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCC--eEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhh---------------h
Confidence 358999999999999887653 33 488999999999998888521 2223333311 1
Q ss_pred CCCCCccceEEecCCCCccccccccc-hhhhccccc-------c--hHHHHHHHh-hhcCCc-EEEEccccccccccchh
Q psy12304 189 LPQKHEVDLIVAGPPCQGFSQLNRAR-ELEKSKLKN-------G--LVFTFLSFC-DLFQPK-YIILENVTGLVHFNKNE 256 (620)
Q Consensus 189 ~p~~~~vD~i~gGpPCQ~fS~~~~~~-~~~~~d~r~-------~--L~~~~~~~i-~~~~P~-~~v~ENV~gl~~~~~~~ 256 (620)
++ .+.+|+|+..||=-+.+...... .-....+.. . .+..+++-+ +.++|. .+++| .|.-
T Consensus 202 ~~-~~~fDlIvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lE--ig~~------ 272 (506)
T PRK01544 202 IE-KQKFDFIVSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILE--IGFK------ 272 (506)
T ss_pred Cc-CCCccEEEECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEE--ECCc------
Confidence 22 24699999999955544321100 000001111 1 122233222 345776 46667 2321
Q ss_pred HHHHHHHHHHcCCCEEEEEEEecCCCCCcccccEEEEEE
Q psy12304 257 ILQCIFHCLLKMNYQVTFDVLQSGNYGVAQSRNRVVILA 295 (620)
Q Consensus 257 ~~~~i~~~l~~~GY~v~~~~l~A~~yGvPQ~R~R~fivg 295 (620)
..+.+.+.|.+.||...... .|+ +.+.|++++-
T Consensus 273 q~~~v~~~~~~~g~~~~~~~---~D~---~g~~R~v~~~ 305 (506)
T PRK01544 273 QEEAVTQIFLDHGYNIESVY---KDL---QGHSRVILIS 305 (506)
T ss_pred hHHHHHHHHHhcCCCceEEE---ecC---CCCceEEEec
Confidence 23455666677888643332 344 5678888653
No 103
>PLN02823 spermine synthase
Probab=91.83 E-value=5.8 Score=42.15 Aligned_cols=150 Identities=12% Similarity=0.136 Sum_probs=93.4
Q ss_pred cceecccccccHHHHHHHh-cCCCccEEEEcCchhHHHHHHHhcC---------CCcccccchHHHHHHhhcccccccCc
Q psy12304 118 LKCLDLFSGCGGLMEGLCQ-AGVAKPCWSVELERSEAASYDANFQ---------ECSVIQDDCNLVLKSLLKGHTQHKGV 187 (620)
Q Consensus 118 l~~~dLFsG~Gg~s~Gl~~-aG~~~~~~a~e~d~~a~~ty~~N~p---------~~~~~~~di~~~~~~~~~~~~~~~~~ 187 (620)
-++|.+=.|.|++..-+.. .+. +-+.+||+|+..++.-+.+++ ...++.+|...+++.
T Consensus 105 k~VLiiGgG~G~~~re~l~~~~~-~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~----------- 172 (336)
T PLN02823 105 KTVFIMGGGEGSTAREVLRHKTV-EKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEK----------- 172 (336)
T ss_pred CEEEEECCCchHHHHHHHhCCCC-CeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhh-----------
Confidence 3677777777776654444 455 568899999999998888774 334566777666532
Q ss_pred CCCCCCccceEEecCCCCccccccccchhhhcccccchH-HHHHH--HhhhcCCcEEEEccccccccccchhHHHHHHHH
Q psy12304 188 SLPQKHEVDLIVAGPPCQGFSQLNRARELEKSKLKNGLV-FTFLS--FCDLFQPKYIILENVTGLVHFNKNEILQCIFHC 264 (620)
Q Consensus 188 ~~p~~~~vD~i~gGpPCQ~fS~~~~~~~~~~~d~r~~L~-~~~~~--~i~~~~P~~~v~ENV~gl~~~~~~~~~~~i~~~ 264 (620)
..+.+|+|+.-.+ .+.+. +. -..|+ .+|++ +.+.++|.-+++=|+...........+..+++.
T Consensus 173 ---~~~~yDvIi~D~~-dp~~~-~~---------~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~~s~~~~~~~~~~~~i~~t 238 (336)
T PLN02823 173 ---RDEKFDVIIGDLA-DPVEG-GP---------CYQLYTKSFYERIVKPKLNPGGIFVTQAGPAGILTHKEVFSSIYNT 238 (336)
T ss_pred ---CCCCccEEEecCC-Ccccc-Cc---------chhhccHHHHHHHHHHhcCCCcEEEEeccCcchhccHHHHHHHHHH
Confidence 1246899998753 11111 10 01122 24554 346789999888776532111234567778888
Q ss_pred HHcCCCEEEEEEEecCCCCCcccccEEEEEEec
Q psy12304 265 LLKMNYQVTFDVLQSGNYGVAQSRNRVVILASK 297 (620)
Q Consensus 265 l~~~GY~v~~~~l~A~~yGvPQ~R~R~fivg~~ 297 (620)
|.+..-.|......--.||.. .-|++|++
T Consensus 239 l~~vF~~v~~y~~~vPsf~~~----w~f~~aS~ 267 (336)
T PLN02823 239 LRQVFKYVVPYTAHVPSFADT----WGWVMASD 267 (336)
T ss_pred HHHhCCCEEEEEeecCCCCCc----eEEEEEeC
Confidence 887766666666555566642 67888875
No 104
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=91.77 E-value=0.41 Score=47.06 Aligned_cols=52 Identities=19% Similarity=0.211 Sum_probs=42.9
Q ss_pred cceecccccccHHHHHHHhc-CCCccEEEEcCchhHHHHHHHhcCCCcccccch
Q psy12304 118 LKCLDLFSGCGGLMEGLCQA-GVAKPCWSVELERSEAASYDANFQECSVIQDDC 170 (620)
Q Consensus 118 l~~~dLFsG~Gg~s~Gl~~a-G~~~~~~a~e~d~~a~~ty~~N~p~~~~~~~di 170 (620)
-++||+=||.|-+...|... +. ..+.++|+++.+++..+.++++..+..+|+
T Consensus 45 ~~VLDiGCG~G~~~~~L~~~~~~-~~v~giDiS~~~l~~A~~~~~~~~~~~~d~ 97 (204)
T TIGR03587 45 ASILELGANIGMNLAALKRLLPF-KHIYGVEINEYAVEKAKAYLPNINIIQGSL 97 (204)
T ss_pred CcEEEEecCCCHHHHHHHHhCCC-CeEEEEECCHHHHHHHHhhCCCCcEEEeec
Confidence 36999999999999999875 33 359999999999999999888766655554
No 105
>PRK07402 precorrin-6B methylase; Provisional
Probab=91.49 E-value=0.27 Score=47.80 Aligned_cols=55 Identities=13% Similarity=0.047 Sum_probs=40.2
Q ss_pred cceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcC-----CCcccccchHH
Q psy12304 118 LKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQ-----ECSVIQDDCNL 172 (620)
Q Consensus 118 l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p-----~~~~~~~di~~ 172 (620)
-+++|++||.|.++..+...+-..-+.++|+++.+++..+.|.. +..++.+|+.+
T Consensus 42 ~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~ 101 (196)
T PRK07402 42 SVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPE 101 (196)
T ss_pred CEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHH
Confidence 47999999999999888654211258899999999998887752 33445566543
No 106
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=91.40 E-value=0.38 Score=46.36 Aligned_cols=69 Identities=16% Similarity=0.092 Sum_probs=46.4
Q ss_pred CcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhc-----CCCcccccchHHHHHHhhcccccccCcCCCC
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANF-----QECSVIQDDCNLVLKSLLKGHTQHKGVSLPQ 191 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~-----p~~~~~~~di~~~~~~~~~~~~~~~~~~~p~ 191 (620)
..+++|+.||.|.+++-+...+-..-+.++|.++.+++..+.|. .+..++++|+.++ +.
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~----------------~~ 106 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDF----------------QH 106 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhc----------------cc
Confidence 45899999999998887765442124899999998776655442 2344555665432 12
Q ss_pred CCccceEEec
Q psy12304 192 KHEVDLIVAG 201 (620)
Q Consensus 192 ~~~vD~i~gG 201 (620)
.+.+|+|+..
T Consensus 107 ~~~fD~I~s~ 116 (181)
T TIGR00138 107 EEQFDVITSR 116 (181)
T ss_pred cCCccEEEeh
Confidence 3478998864
No 107
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=91.37 E-value=0.49 Score=48.05 Aligned_cols=73 Identities=22% Similarity=0.245 Sum_probs=54.6
Q ss_pred CcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcCCCcccccchHHHHHHhhcccccccCcCCCCCCccc
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQECSVIQDDCNLVLKSLLKGHTQHKGVSLPQKHEVD 196 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p~~~~~~~di~~~~~~~~~~~~~~~~~~~p~~~~vD 196 (620)
.-++||+-||.|.++.-+....-..-+.++|+++..++.-+.++++..++.+|+.++ +....+|
T Consensus 32 ~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~----------------~~~~~fD 95 (258)
T PRK01683 32 PRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLPDCQFVEADIASW----------------QPPQALD 95 (258)
T ss_pred CCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCCCeEEECchhcc----------------CCCCCcc
Confidence 458999999999999888765211358999999999999998888777766776432 1124789
Q ss_pred eEEecCCCC
Q psy12304 197 LIVAGPPCQ 205 (620)
Q Consensus 197 ~i~gGpPCQ 205 (620)
+|+.....+
T Consensus 96 ~v~~~~~l~ 104 (258)
T PRK01683 96 LIFANASLQ 104 (258)
T ss_pred EEEEccChh
Confidence 999876543
No 108
>PLN02672 methionine S-methyltransferase
Probab=91.36 E-value=0.28 Score=59.35 Aligned_cols=43 Identities=9% Similarity=0.119 Sum_probs=36.3
Q ss_pred cceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhc
Q psy12304 118 LKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANF 160 (620)
Q Consensus 118 l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~ 160 (620)
.+++||.||.|.+++.+...+-...+.|+|+++.|++.-+.|.
T Consensus 120 ~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na 162 (1082)
T PLN02672 120 KTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINL 162 (1082)
T ss_pred CEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH
Confidence 4799999999999999987542135899999999999988875
No 109
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=91.31 E-value=0.62 Score=46.44 Aligned_cols=48 Identities=21% Similarity=0.198 Sum_probs=41.5
Q ss_pred CCCcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcCCCc
Q psy12304 115 DTPLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQECS 164 (620)
Q Consensus 115 ~~~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p~~~ 164 (620)
...+++||+=||.|-||.-+.+.|+ .|.++|+++.++++-+..-....
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~Ga--~VtgiD~se~~I~~Ak~ha~e~g 105 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARLGA--SVTGIDASEKPIEVAKLHALESG 105 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHCCC--eeEEecCChHHHHHHHHhhhhcc
Confidence 4678999999999999999999997 48899999999999887655443
No 110
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=91.30 E-value=0.47 Score=50.05 Aligned_cols=43 Identities=23% Similarity=0.212 Sum_probs=36.9
Q ss_pred CCcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhc
Q psy12304 116 TPLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANF 160 (620)
Q Consensus 116 ~~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~ 160 (620)
...++||+-||.|.+++-|...|. .++++|.++..++..+.+.
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~g~--~V~GID~s~~~i~~Ar~~~ 173 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARMGA--TVTGVDAVDKNVKIARLHA 173 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHH
Confidence 346899999999999999988886 4889999999998887653
No 111
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=91.19 E-value=5.2 Score=38.54 Aligned_cols=124 Identities=19% Similarity=0.257 Sum_probs=79.3
Q ss_pred ceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhc-----CCCcccccchHHHHHHhhcccccccCcCCCCCC
Q psy12304 119 KCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANF-----QECSVIQDDCNLVLKSLLKGHTQHKGVSLPQKH 193 (620)
Q Consensus 119 ~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~-----p~~~~~~~di~~~~~~~~~~~~~~~~~~~p~~~ 193 (620)
.++|+=||+|+++.=+..+|-.--++|+|.|+.|+++.+.|. ++..+..+|.-+.+ ..+|
T Consensus 37 ~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L------------~~~~--- 101 (187)
T COG2242 37 RLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEAL------------PDLP--- 101 (187)
T ss_pred EEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhh------------cCCC---
Confidence 789999999988876665565445899999999999999995 33344445544332 1233
Q ss_pred ccceEEecCCCCccccccccchhhhcccccchHHHHHH-HhhhcCCcEEEEccccccccccchhHHHHHHHHHHcCCCE-
Q psy12304 194 EVDLIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLS-FCDLFQPKYIILENVTGLVHFNKNEILQCIFHCLLKMNYQ- 271 (620)
Q Consensus 194 ~vD~i~gGpPCQ~fS~~~~~~~~~~~d~r~~L~~~~~~-~i~~~~P~~~v~ENV~gl~~~~~~~~~~~i~~~l~~~GY~- 271 (620)
++|.++.|- +.. +.+.++ ..+.++|---++=|+..+ +....+++.|+++|+.
T Consensus 102 ~~daiFIGG------------g~~--------i~~ile~~~~~l~~ggrlV~naitl------E~~~~a~~~~~~~g~~e 155 (187)
T COG2242 102 SPDAIFIGG------------GGN--------IEEILEAAWERLKPGGRLVANAITL------ETLAKALEALEQLGGRE 155 (187)
T ss_pred CCCEEEECC------------CCC--------HHHHHHHHHHHcCcCCeEEEEeecH------HHHHHHHHHHHHcCCce
Confidence 567665541 011 112233 335678877777777766 4467788999999993
Q ss_pred -EEEEEEecCCCC
Q psy12304 272 -VTFDVLQSGNYG 283 (620)
Q Consensus 272 -v~~~~l~A~~yG 283 (620)
++..+-.+...|
T Consensus 156 i~~v~is~~~~lg 168 (187)
T COG2242 156 IVQVQISRGKPLG 168 (187)
T ss_pred EEEEEeecceecc
Confidence 344444444443
No 112
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=91.14 E-value=0.4 Score=48.51 Aligned_cols=69 Identities=16% Similarity=0.074 Sum_probs=51.4
Q ss_pred CcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcCCCcccccchHHHHHHhhcccccccCcCCCCCCccc
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQECSVIQDDCNLVLKSLLKGHTQHKGVSLPQKHEVD 196 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p~~~~~~~di~~~~~~~~~~~~~~~~~~~p~~~~vD 196 (620)
.-++||+-||.|.++.-|...|. .+.++|+++.+++.-+.+.+.....++|+..+ .++ .+.+|
T Consensus 43 ~~~vLDiGcG~G~~~~~l~~~~~--~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~--------------~~~-~~~fD 105 (251)
T PRK10258 43 FTHVLDAGCGPGWMSRYWRERGS--QVTALDLSPPMLAQARQKDAADHYLAGDIESL--------------PLA-TATFD 105 (251)
T ss_pred CCeEEEeeCCCCHHHHHHHHcCC--eEEEEECCHHHHHHHHhhCCCCCEEEcCcccC--------------cCC-CCcEE
Confidence 34799999999999988887775 48999999999999888876544555665432 121 24689
Q ss_pred eEEecC
Q psy12304 197 LIVAGP 202 (620)
Q Consensus 197 ~i~gGp 202 (620)
+|+...
T Consensus 106 ~V~s~~ 111 (251)
T PRK10258 106 LAWSNL 111 (251)
T ss_pred EEEECc
Confidence 998654
No 113
>PRK04266 fibrillarin; Provisional
Probab=90.93 E-value=5.7 Score=39.69 Aligned_cols=144 Identities=11% Similarity=0.059 Sum_probs=78.7
Q ss_pred cceecccccccHHHHHHHhc-CCCccEEEEcCchhHHHHHHHhc---CCCcccccchHHHHHHhhcccccccCcCCCCCC
Q psy12304 118 LKCLDLFSGCGGLMEGLCQA-GVAKPCWSVELERSEAASYDANF---QECSVIQDDCNLVLKSLLKGHTQHKGVSLPQKH 193 (620)
Q Consensus 118 l~~~dLFsG~Gg~s~Gl~~a-G~~~~~~a~e~d~~a~~ty~~N~---p~~~~~~~di~~~~~~~~~~~~~~~~~~~p~~~ 193 (620)
-+++|+.||+|+++..+... +- ..++|+|+++.+.+....+. ++...+.+|+.... ....++ .
T Consensus 74 ~~VlD~G~G~G~~~~~la~~v~~-g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~----------~~~~l~--~ 140 (226)
T PRK04266 74 SKVLYLGAASGTTVSHVSDIVEE-GVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPE----------RYAHVV--E 140 (226)
T ss_pred CEEEEEccCCCHHHHHHHHhcCC-CeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcc----------hhhhcc--c
Confidence 48999999999999998774 32 36999999998777554442 34444555553210 001122 3
Q ss_pred ccceEEecCCCCccccccccchhhhcccccchHHHHHHHhhhcCCcEEEEcccccc-ccc--cchhHHHHHHHHHHcCCC
Q psy12304 194 EVDLIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLSFCDLFQPKYIILENVTGL-VHF--NKNEILQCIFHCLLKMNY 270 (620)
Q Consensus 194 ~vD~i~gGpPCQ~fS~~~~~~~~~~~d~r~~L~~~~~~~i~~~~P~~~v~ENV~gl-~~~--~~~~~~~~i~~~l~~~GY 270 (620)
.+|+|....+ . . +....++. .+.+.++|.-.++=.|+.- +.. .....++..+..|.+.|+
T Consensus 141 ~~D~i~~d~~-------~----p---~~~~~~L~---~~~r~LKpGG~lvI~v~~~~~d~~~~~~~~~~~~~~~l~~aGF 203 (226)
T PRK04266 141 KVDVIYQDVA-------Q----P---NQAEIAID---NAEFFLKDGGYLLLAIKARSIDVTKDPKEIFKEEIRKLEEGGF 203 (226)
T ss_pred cCCEEEECCC-------C----h---hHHHHHHH---HHHHhcCCCcEEEEEEecccccCcCCHHHHHHHHHHHHHHcCC
Confidence 5899874321 0 0 00001122 2334578865544333321 111 112456677889999999
Q ss_pred EEEEEEEecCCCCCcccccEEEEEEe
Q psy12304 271 QVTFDVLQSGNYGVAQSRNRVVILAS 296 (620)
Q Consensus 271 ~v~~~~l~A~~yGvPQ~R~R~fivg~ 296 (620)
++... .+. .|..+.-+.+++.
T Consensus 204 ~~i~~-~~l----~p~~~~h~~~v~~ 224 (226)
T PRK04266 204 EILEV-VDL----EPYHKDHAAVVAR 224 (226)
T ss_pred eEEEE-EcC----CCCcCCeEEEEEE
Confidence 86532 222 3344455555553
No 114
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=90.52 E-value=0.46 Score=47.01 Aligned_cols=43 Identities=21% Similarity=0.157 Sum_probs=37.0
Q ss_pred CcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcC
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQ 161 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p 161 (620)
..+++|+.||.|.++.-+...+. .+.++|+++.++..-+.+.+
T Consensus 56 ~~~vLDiGcG~G~~~~~la~~~~--~v~gvD~s~~~i~~a~~~~~ 98 (219)
T TIGR02021 56 GKRVLDAGCGTGLLSIELAKRGA--IVKAVDISEQMVQMARNRAQ 98 (219)
T ss_pred CCEEEEEeCCCCHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHH
Confidence 46899999999999999988775 48899999999988877764
No 115
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=90.45 E-value=0.47 Score=40.59 Aligned_cols=66 Identities=21% Similarity=0.295 Sum_probs=46.8
Q ss_pred eecccccccHHHHHHHhc---CCCccEEEEcCchhHHHHHHHhc----CCCcccccchHHHHHHhhcccccccCcCCCCC
Q psy12304 120 CLDLFSGCGGLMEGLCQA---GVAKPCWSVELERSEAASYDANF----QECSVIQDDCNLVLKSLLKGHTQHKGVSLPQK 192 (620)
Q Consensus 120 ~~dLFsG~Gg~s~Gl~~a---G~~~~~~a~e~d~~a~~ty~~N~----p~~~~~~~di~~~~~~~~~~~~~~~~~~~p~~ 192 (620)
++||-||.|-....|... |....++++|+++.+++..+.++ +.+..+.+|+.++.. ..
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~---------------~~ 65 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPF---------------SD 65 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHH---------------HS
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcc---------------cC
Confidence 689999999999999875 43135899999999999888887 556667778765421 12
Q ss_pred CccceEEe
Q psy12304 193 HEVDLIVA 200 (620)
Q Consensus 193 ~~vD~i~g 200 (620)
+.+|+|+.
T Consensus 66 ~~~D~v~~ 73 (101)
T PF13649_consen 66 GKFDLVVC 73 (101)
T ss_dssp SSEEEEEE
T ss_pred CCeeEEEE
Confidence 37899887
No 116
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=90.42 E-value=0.27 Score=55.63 Aligned_cols=83 Identities=17% Similarity=0.207 Sum_probs=52.5
Q ss_pred CCcceecccccccHHHHHHHhc--------CCCccEEEEcCchhHHHHHHHhcCCCc-----ccccchHHHHHHhhcccc
Q psy12304 116 TPLKCLDLFSGCGGLMEGLCQA--------GVAKPCWSVELERSEAASYDANFQECS-----VIQDDCNLVLKSLLKGHT 182 (620)
Q Consensus 116 ~~l~~~dLFsG~Gg~s~Gl~~a--------G~~~~~~a~e~d~~a~~ty~~N~p~~~-----~~~~di~~~~~~~~~~~~ 182 (620)
...+++|.+||+|++-.++... ++...++++|+|+.|+...+.|..... +.++|.... . .
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~---~----~ 103 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSY---V----L 103 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeecccccc---c----c
Confidence 4578999999999999887642 121357999999999998888753221 222221100 0 0
Q ss_pred cccCcCCCCCCccceEEecCCCCccc
Q psy12304 183 QHKGVSLPQKHEVDLIVAGPPCQGFS 208 (620)
Q Consensus 183 ~~~~~~~p~~~~vD~i~gGpPCQ~fS 208 (620)
. ... ...+.+|+|+|-||=-...
T Consensus 104 ~-~~~--~~~~~fD~IIgNPPy~~~k 126 (524)
T TIGR02987 104 L-NIE--SYLDLFDIVITNPPYGRLK 126 (524)
T ss_pred c-ccc--cccCcccEEEeCCCccccC
Confidence 0 000 1135799999999976553
No 117
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=90.19 E-value=0.41 Score=49.57 Aligned_cols=125 Identities=16% Similarity=0.200 Sum_probs=75.4
Q ss_pred CCcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcCCCcccccchHHHHHHhhcccccccCcCCCCCCcc
Q psy12304 116 TPLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQECSVIQDDCNLVLKSLLKGHTQHKGVSLPQKHEV 195 (620)
Q Consensus 116 ~~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p~~~~~~~di~~~~~~~~~~~~~~~~~~~p~~~~v 195 (620)
+..++||+=||.|-|+++....|. .-+.|+|+|+.|+++-+.|.---. +.... .+... .....+..+.+
T Consensus 162 ~g~~vlDvGcGSGILaIAa~kLGA-~~v~g~DiDp~AV~aa~eNa~~N~-----v~~~~-~~~~~----~~~~~~~~~~~ 230 (300)
T COG2264 162 KGKTVLDVGCGSGILAIAAAKLGA-KKVVGVDIDPQAVEAARENARLNG-----VELLV-QAKGF----LLLEVPENGPF 230 (300)
T ss_pred CCCEEEEecCChhHHHHHHHHcCC-ceEEEecCCHHHHHHHHHHHHHcC-----Cchhh-hcccc----cchhhcccCcc
Confidence 566899999999999999999998 679999999999999888852111 11000 00000 11223334578
Q ss_pred ceEEecCCCCccccccccchhhhcccccchHHHHHHHhhhcCCcEEEEccccccccccchhHHHHHHHHHHcCCCEEEEE
Q psy12304 196 DLIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLSFCDLFQPKYIILENVTGLVHFNKNEILQCIFHCLLKMNYQVTFD 275 (620)
Q Consensus 196 D~i~gGpPCQ~fS~~~~~~~~~~~d~r~~L~~~~~~~i~~~~P~~~v~ENV~gl~~~~~~~~~~~i~~~l~~~GY~v~~~ 275 (620)
|+|++-- ..+.--.|.. .+...++|-..++ ..||+. +-.+.+.+++.+.|..+...
T Consensus 231 DvIVANI---------------LA~vl~~La~---~~~~~lkpgg~lI--lSGIl~----~q~~~V~~a~~~~gf~v~~~ 286 (300)
T COG2264 231 DVIVANI---------------LAEVLVELAP---DIKRLLKPGGRLI--LSGILE----DQAESVAEAYEQAGFEVVEV 286 (300)
T ss_pred cEEEehh---------------hHHHHHHHHH---HHHHHcCCCceEE--EEeehH----hHHHHHHHHHHhCCCeEeEE
Confidence 9998632 1111111222 2445567733222 235554 23567788888888877544
No 118
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=90.18 E-value=0.79 Score=46.56 Aligned_cols=70 Identities=20% Similarity=0.200 Sum_probs=51.7
Q ss_pred CCcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcC------CCcccccchHHHHHHhhcccccccCcCC
Q psy12304 116 TPLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQ------ECSVIQDDCNLVLKSLLKGHTQHKGVSL 189 (620)
Q Consensus 116 ~~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p------~~~~~~~di~~~~~~~~~~~~~~~~~~~ 189 (620)
.+.+++|+-||.|.++..|...|. + +.++|+++.+++.-+.+.. +..++++|+.++.. .
T Consensus 44 ~~~~vLDiGcG~G~~a~~la~~g~-~-v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~-------------~ 108 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLAELGH-Q-VILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQ-------------H 108 (255)
T ss_pred CCCEEEEeCCCchHHHHHHHHcCC-E-EEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhh-------------h
Confidence 356899999999999999999986 4 7899999999988877653 23455667655411 1
Q ss_pred CCCCccceEEec
Q psy12304 190 PQKHEVDLIVAG 201 (620)
Q Consensus 190 p~~~~vD~i~gG 201 (620)
..+.+|+|+..
T Consensus 109 -~~~~fD~V~~~ 119 (255)
T PRK11036 109 -LETPVDLILFH 119 (255)
T ss_pred -cCCCCCEEEeh
Confidence 12478999864
No 119
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=90.01 E-value=0.37 Score=50.08 Aligned_cols=120 Identities=17% Similarity=0.242 Sum_probs=72.5
Q ss_pred cceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcCCCcccccchHHHHHHhhcccccccCcCCCCCCccce
Q psy12304 118 LKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQECSVIQDDCNLVLKSLLKGHTQHKGVSLPQKHEVDL 197 (620)
Q Consensus 118 l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p~~~~~~~di~~~~~~~~~~~~~~~~~~~p~~~~vD~ 197 (620)
-++||+=||.|-|+++....|. +.+.|+|+|+.|+++-+.|..--.+ ...+... .....+. +.+|+
T Consensus 163 ~~vLDvG~GSGILaiaA~klGA-~~v~a~DiDp~Av~~a~~N~~~N~~-~~~~~v~-----------~~~~~~~-~~~dl 228 (295)
T PF06325_consen 163 KRVLDVGCGSGILAIAAAKLGA-KKVVAIDIDPLAVEAARENAELNGV-EDRIEVS-----------LSEDLVE-GKFDL 228 (295)
T ss_dssp SEEEEES-TTSHHHHHHHHTTB-SEEEEEESSCHHHHHHHHHHHHTT--TTCEEES-----------CTSCTCC-S-EEE
T ss_pred CEEEEeCCcHHHHHHHHHHcCC-CeEEEecCCHHHHHHHHHHHHHcCC-CeeEEEE-----------Eeccccc-ccCCE
Confidence 3899999999999999999998 7799999999999998888421100 0011000 0011221 56777
Q ss_pred EEecCCCCccccccccchhhhcccccchHHHHHHHhhhcCCcEEEEccccccccccchhHHHHHHHHHHcCCCEEEEEE
Q psy12304 198 IVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLSFCDLFQPKYIILENVTGLVHFNKNEILQCIFHCLLKMNYQVTFDV 276 (620)
Q Consensus 198 i~gGpPCQ~fS~~~~~~~~~~~d~r~~L~~~~~~~i~~~~P~~~v~ENV~gl~~~~~~~~~~~i~~~l~~~GY~v~~~~ 276 (620)
|++ |-.. +-|+.-.-.+.+.++|.-+++ +.|++..+ ...+++.+.+ |+.+....
T Consensus 229 vvA----------NI~~--------~vL~~l~~~~~~~l~~~G~lI--lSGIl~~~----~~~v~~a~~~-g~~~~~~~ 282 (295)
T PF06325_consen 229 VVA----------NILA--------DVLLELAPDIASLLKPGGYLI--LSGILEEQ----EDEVIEAYKQ-GFELVEER 282 (295)
T ss_dssp EEE----------ES-H--------HHHHHHHHHCHHHEEEEEEEE--EEEEEGGG----HHHHHHHHHT-TEEEEEEE
T ss_pred EEE----------CCCH--------HHHHHHHHHHHHhhCCCCEEE--EccccHHH----HHHHHHHHHC-CCEEEEEE
Confidence 764 3211 112222223456678875444 28998654 4566777876 98875443
No 120
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=89.85 E-value=0.67 Score=46.10 Aligned_cols=72 Identities=11% Similarity=0.193 Sum_probs=48.1
Q ss_pred cceecccccccHHHHHHHhc-CCCccEEEEcCchhHHHHHHHhcC-----CCcccccchHHHHHHhhcccccccCcCCCC
Q psy12304 118 LKCLDLFSGCGGLMEGLCQA-GVAKPCWSVELERSEAASYDANFQ-----ECSVIQDDCNLVLKSLLKGHTQHKGVSLPQ 191 (620)
Q Consensus 118 l~~~dLFsG~Gg~s~Gl~~a-G~~~~~~a~e~d~~a~~ty~~N~p-----~~~~~~~di~~~~~~~~~~~~~~~~~~~p~ 191 (620)
-++||+.||.|.++.-+.+. |-..-+.++|+++..++.-+.|.. +..++.+|+.++ .++
T Consensus 47 ~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~--------------~~~- 111 (231)
T TIGR02752 47 TSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMEL--------------PFD- 111 (231)
T ss_pred CEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcC--------------CCC-
Confidence 47999999999999887654 321258899999999887776653 233344444321 122
Q ss_pred CCccceEEecCCC
Q psy12304 192 KHEVDLIVAGPPC 204 (620)
Q Consensus 192 ~~~vD~i~gGpPC 204 (620)
.+.+|+|+.+...
T Consensus 112 ~~~fD~V~~~~~l 124 (231)
T TIGR02752 112 DNSFDYVTIGFGL 124 (231)
T ss_pred CCCccEEEEeccc
Confidence 3578999876543
No 121
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=89.72 E-value=0.56 Score=45.72 Aligned_cols=42 Identities=24% Similarity=0.126 Sum_probs=36.3
Q ss_pred CcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhc
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANF 160 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~ 160 (620)
..++||+-||.|.++.-|.+.|+ .+.++|+++.+++..+.+.
T Consensus 31 ~~~vLDiGcG~G~~a~~La~~g~--~V~gvD~S~~~i~~a~~~~ 72 (197)
T PRK11207 31 PGKTLDLGCGNGRNSLYLAANGF--DVTAWDKNPMSIANLERIK 72 (197)
T ss_pred CCcEEEECCCCCHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHH
Confidence 35799999999999999999997 4889999999988776654
No 122
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=89.30 E-value=0.78 Score=49.13 Aligned_cols=85 Identities=21% Similarity=0.331 Sum_probs=58.1
Q ss_pred CCcceecccccccHHHHHHHhcCC--CccEEEEcCchhHHHHHHHhcCCCc-----ccccchHHHHHHhhcccccccCcC
Q psy12304 116 TPLKCLDLFSGCGGLMEGLCQAGV--AKPCWSVELERSEAASYDANFQECS-----VIQDDCNLVLKSLLKGHTQHKGVS 188 (620)
Q Consensus 116 ~~l~~~dLFsG~Gg~s~Gl~~aG~--~~~~~a~e~d~~a~~ty~~N~p~~~-----~~~~di~~~~~~~~~~~~~~~~~~ 188 (620)
..-+|+|++|+.||=+.=+.+..- ..+++|+|+++.-.+..+.|..... +.+.|-..+ ...
T Consensus 156 pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~------------~~~ 223 (355)
T COG0144 156 PGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRL------------AEL 223 (355)
T ss_pred CcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccc------------ccc
Confidence 346899999999997766666442 1357999999999999999864332 222232111 112
Q ss_pred CCCCCccceEEecCCCCccccccc
Q psy12304 189 LPQKHEVDLIVAGPPCQGFSQLNR 212 (620)
Q Consensus 189 ~p~~~~vD~i~gGpPCQ~fS~~~~ 212 (620)
.+..+.+|-|..-+||.|.....+
T Consensus 224 ~~~~~~fD~iLlDaPCSg~G~irr 247 (355)
T COG0144 224 LPGGEKFDRILLDAPCSGTGVIRR 247 (355)
T ss_pred ccccCcCcEEEECCCCCCCccccc
Confidence 222224999999999999888765
No 123
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=89.26 E-value=0.92 Score=47.77 Aligned_cols=44 Identities=16% Similarity=0.199 Sum_probs=34.8
Q ss_pred CCCcceecccccccHHHHHHH--hcCCCccEEEEcCchhHHHHHHHhc
Q psy12304 115 DTPLKCLDLFSGCGGLMEGLC--QAGVAKPCWSVELERSEAASYDANF 160 (620)
Q Consensus 115 ~~~l~~~dLFsG~Gg~s~Gl~--~aG~~~~~~a~e~d~~a~~ty~~N~ 160 (620)
....++||+-||+|++..-+. ..|+ + +.|+|+|+.|++.-+.|.
T Consensus 113 ~~~~~vLDIGtGag~I~~lLa~~~~~~-~-~~atDId~~Al~~A~~Nv 158 (321)
T PRK11727 113 GANVRVLDIGVGANCIYPLIGVHEYGW-R-FVGSDIDPQALASAQAII 158 (321)
T ss_pred CCCceEEEecCCccHHHHHHHhhCCCC-E-EEEEeCCHHHHHHHHHHH
Confidence 456789999999998865443 3465 4 789999999999888775
No 124
>PRK05785 hypothetical protein; Provisional
Probab=89.05 E-value=1.4 Score=44.06 Aligned_cols=93 Identities=10% Similarity=0.099 Sum_probs=58.9
Q ss_pred CcceecccccccHHHHHHHhc-CCCccEEEEcCchhHHHHHHHhcCCCcccccchHHHHHHhhcccccccCcCCCCCCcc
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQA-GVAKPCWSVELERSEAASYDANFQECSVIQDDCNLVLKSLLKGHTQHKGVSLPQKHEV 195 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~a-G~~~~~~a~e~d~~a~~ty~~N~p~~~~~~~di~~~~~~~~~~~~~~~~~~~p~~~~v 195 (620)
.-++||+-||.|-++.-+... |. -+.++|+++..++.-+... ..+++|...+ .++ .+.+
T Consensus 52 ~~~VLDlGcGtG~~~~~l~~~~~~--~v~gvD~S~~Ml~~a~~~~---~~~~~d~~~l--------------p~~-d~sf 111 (226)
T PRK05785 52 PKKVLDVAAGKGELSYHFKKVFKY--YVVALDYAENMLKMNLVAD---DKVVGSFEAL--------------PFR-DKSF 111 (226)
T ss_pred CCeEEEEcCCCCHHHHHHHHhcCC--EEEEECCCHHHHHHHHhcc---ceEEechhhC--------------CCC-CCCE
Confidence 347999999999999888877 44 4889999999988765432 2233444321 121 3579
Q ss_pred ceEEecCCCCccccccccchhhhcccccchHHHHHHHhhhcCCcEEEEc
Q psy12304 196 DLIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLSFCDLFQPKYIILE 244 (620)
Q Consensus 196 D~i~gGpPCQ~fS~~~~~~~~~~~d~r~~L~~~~~~~i~~~~P~~~v~E 244 (620)
|+|+.+.-.+.+ .| ...++.++.|+ ++|...++|
T Consensus 112 D~v~~~~~l~~~-----------~d-~~~~l~e~~Rv---Lkp~~~ile 145 (226)
T PRK05785 112 DVVMSSFALHAS-----------DN-IEKVIAEFTRV---SRKQVGFIA 145 (226)
T ss_pred EEEEecChhhcc-----------CC-HHHHHHHHHHH---hcCceEEEE
Confidence 999987642211 11 12355555555 457665665
No 125
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=88.90 E-value=1.9 Score=40.63 Aligned_cols=85 Identities=19% Similarity=0.294 Sum_probs=68.7
Q ss_pred CCcceecccccccHHHHHHHhcCC-CccEEEEcCchhHHHHHHHhcCCCcccccchHHHHHHhhcccccccCcCCCCCCc
Q psy12304 116 TPLKCLDLFSGCGGLMEGLCQAGV-AKPCWSVELERSEAASYDANFQECSVIQDDCNLVLKSLLKGHTQHKGVSLPQKHE 194 (620)
Q Consensus 116 ~~l~~~dLFsG~Gg~s~Gl~~aG~-~~~~~a~e~d~~a~~ty~~N~p~~~~~~~di~~~~~~~~~~~~~~~~~~~p~~~~ 194 (620)
..+.+++|=.|.|-+...+-.-|. -+.+.++|++++-...++.-+|+..++++|..++-..+ |+ .. ...
T Consensus 48 sglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l--~e-----~~---gq~ 117 (194)
T COG3963 48 SGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTL--GE-----HK---GQF 117 (194)
T ss_pred cCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHH--hh-----cC---CCe
Confidence 467899999999999999999998 45789999999999999999999999999876652211 11 11 127
Q ss_pred cceEEecCCCCccccc
Q psy12304 195 VDLIVAGPPCQGFSQL 210 (620)
Q Consensus 195 vD~i~gGpPCQ~fS~~ 210 (620)
+|.++.|.|--.|+..
T Consensus 118 ~D~viS~lPll~~P~~ 133 (194)
T COG3963 118 FDSVISGLPLLNFPMH 133 (194)
T ss_pred eeeEEeccccccCcHH
Confidence 8999999998777764
No 126
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=88.38 E-value=3.1 Score=41.77 Aligned_cols=105 Identities=17% Similarity=0.145 Sum_probs=64.8
Q ss_pred cceecccccccHHHHHHHhc-CCCccEEEEcCchhHHHHHHHhcCC------CcccccchHHHHHHhhcccccccCcCCC
Q psy12304 118 LKCLDLFSGCGGLMEGLCQA-GVAKPCWSVELERSEAASYDANFQE------CSVIQDDCNLVLKSLLKGHTQHKGVSLP 190 (620)
Q Consensus 118 l~~~dLFsG~Gg~s~Gl~~a-G~~~~~~a~e~d~~a~~ty~~N~p~------~~~~~~di~~~~~~~~~~~~~~~~~~~p 190 (620)
-+++|+.+|+|..++.+..+ +-.-.+.++|+++.+.+.-+.|+.. ..++.+|+.+.+..+... +
T Consensus 70 ~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~---------~ 140 (234)
T PLN02781 70 KNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNN---------D 140 (234)
T ss_pred CEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhC---------C
Confidence 47999999999866666543 1112589999999999988888632 345667777665443211 1
Q ss_pred CCCccceEEecCCCCccccccccchhhhcccccchHHHHHH-HhhhcCCcE-EEEcccc--ccc
Q psy12304 191 QKHEVDLIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLS-FCDLFQPKY-IILENVT--GLV 250 (620)
Q Consensus 191 ~~~~vD~i~gGpPCQ~fS~~~~~~~~~~~d~r~~L~~~~~~-~i~~~~P~~-~v~ENV~--gl~ 250 (620)
..+.+|+|+...+ + . .+..+++ +++.++|-- ++++||- |.+
T Consensus 141 ~~~~fD~VfiDa~--------k---~--------~y~~~~~~~~~ll~~GG~ii~dn~l~~G~v 185 (234)
T PLN02781 141 PKPEFDFAFVDAD--------K---P--------NYVHFHEQLLKLVKVGGIIAFDNTLWFGFV 185 (234)
T ss_pred CCCCCCEEEECCC--------H---H--------HHHHHHHHHHHhcCCCeEEEEEcCCcCCee
Confidence 1347899977532 1 1 1222333 355677865 5669974 544
No 127
>PLN02366 spermidine synthase
Probab=88.08 E-value=21 Score=37.50 Aligned_cols=150 Identities=15% Similarity=0.178 Sum_probs=92.8
Q ss_pred CcceecccccccHHHHHHHhc-CCCccEEEEcCchhHHHHHHHhcCC---------CcccccchHHHHHHhhcccccccC
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQA-GVAKPCWSVELERSEAASYDANFQE---------CSVIQDDCNLVLKSLLKGHTQHKG 186 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~a-G~~~~~~a~e~d~~a~~ty~~N~p~---------~~~~~~di~~~~~~~~~~~~~~~~ 186 (620)
+-++|++=+|.|++..-+... +. +-+..+|+|+..++.-+..+|. ..++.+|...++++
T Consensus 92 pkrVLiIGgG~G~~~rellk~~~v-~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~---------- 160 (308)
T PLN02366 92 PKKVLVVGGGDGGVLREIARHSSV-EQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKN---------- 160 (308)
T ss_pred CCeEEEEcCCccHHHHHHHhCCCC-CeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhh----------
Confidence 457999999999988877664 44 5678999999988887777653 44556676655432
Q ss_pred cCCCCCCccceEEecCCCCccccccccchhhhcccccch-HHHHHHH-hhhcCCcEEEEccccccccccchhHHHHHHHH
Q psy12304 187 VSLPQKHEVDLIVAGPPCQGFSQLNRARELEKSKLKNGL-VFTFLSF-CDLFQPKYIILENVTGLVHFNKNEILQCIFHC 264 (620)
Q Consensus 187 ~~~p~~~~vD~i~gGpPCQ~fS~~~~~~~~~~~d~r~~L-~~~~~~~-i~~~~P~~~v~ENV~gl~~~~~~~~~~~i~~~ 264 (620)
.+ .+.+|+|+.-.+-. .+.+ ..| -.+|++. -+.++|.-++.=|...... ....++.+++.
T Consensus 161 --~~-~~~yDvIi~D~~dp-~~~~------------~~L~t~ef~~~~~~~L~pgGvlv~q~~s~~~--~~~~~~~i~~t 222 (308)
T PLN02366 161 --AP-EGTYDAIIVDSSDP-VGPA------------QELFEKPFFESVARALRPGGVVCTQAESMWL--HMDLIEDLIAI 222 (308)
T ss_pred --cc-CCCCCEEEEcCCCC-CCch------------hhhhHHHHHHHHHHhcCCCcEEEECcCCccc--chHHHHHHHHH
Confidence 11 24689998754321 1111 112 1234443 4568999998877665432 24567788888
Q ss_pred HHcCC-CEEEEEEEecCCCCCcccccEEEEEEecC
Q psy12304 265 LLKMN-YQVTFDVLQSGNYGVAQSRNRVVILASKP 298 (620)
Q Consensus 265 l~~~G-Y~v~~~~l~A~~yGvPQ~R~R~fivg~~~ 298 (620)
|.+.. ..+.+....--.|+. -.--|++|++.
T Consensus 223 l~~~F~~~v~~~~~~vPsy~~---g~w~f~~as~~ 254 (308)
T PLN02366 223 CRETFKGSVNYAWTTVPTYPS---GVIGFVLCSKE 254 (308)
T ss_pred HHHHCCCceeEEEecCCCcCC---CceEEEEEECC
Confidence 88776 344443333222321 34678888875
No 128
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=87.90 E-value=2.1 Score=42.54 Aligned_cols=134 Identities=16% Similarity=0.169 Sum_probs=92.2
Q ss_pred CCcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhc-------CCCcccccchHHHHHHhhcccccccCcC
Q psy12304 116 TPLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANF-------QECSVIQDDCNLVLKSLLKGHTQHKGVS 188 (620)
Q Consensus 116 ~~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~-------p~~~~~~~di~~~~~~~~~~~~~~~~~~ 188 (620)
+--+|+|-|-|-|=.++-.-..|. .-+..+|.|+.-.+.-..|- +...++.+|+.+++++
T Consensus 134 ~G~rVLDtC~GLGYtAi~a~~rGA-~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~------------ 200 (287)
T COG2521 134 RGERVLDTCTGLGYTAIEALERGA-IHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKD------------ 200 (287)
T ss_pred cCCEeeeeccCccHHHHHHHHcCC-cEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhc------------
Confidence 456899999999999988888897 56889999998877666662 1235677888777543
Q ss_pred CCCCCccceEEecCCCCccccccccchhhhcccccchHHHHHHHhhhcCCcEEEEccccccc-cccchhHHHHHHHHHHc
Q psy12304 189 LPQKHEVDLIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLSFCDLFQPKYIILENVTGLV-HFNKNEILQCIFHCLLK 267 (620)
Q Consensus 189 ~p~~~~vD~i~gGpPCQ~fS~~~~~~~~~~~d~r~~L~~~~~~~i~~~~P~~~v~ENV~gl~-~~~~~~~~~~i~~~l~~ 267 (620)
++ -..+|+|+--|| -||.||..-+ -.++.++.|+ ++|--=+|-=|-.-- ..++.+..+.+.+.|.+
T Consensus 201 ~~-D~sfDaIiHDPP--RfS~AgeLYs-------eefY~El~Ri---LkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RLr~ 267 (287)
T COG2521 201 FD-DESFDAIIHDPP--RFSLAGELYS-------EEFYRELYRI---LKRGGRLFHYVGNPGKRYRGLDLPKGVAERLRR 267 (287)
T ss_pred CC-ccccceEeeCCC--ccchhhhHhH-------HHHHHHHHHH---cCcCCcEEEEeCCCCcccccCChhHHHHHHHHh
Confidence 22 126999999999 6888874221 2356666665 566555554443222 12344678889999999
Q ss_pred CCCEEEEE
Q psy12304 268 MNYQVTFD 275 (620)
Q Consensus 268 ~GY~v~~~ 275 (620)
.|+++--.
T Consensus 268 vGF~~v~~ 275 (287)
T COG2521 268 VGFEVVKK 275 (287)
T ss_pred cCceeeee
Confidence 99985433
No 129
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=87.71 E-value=0.69 Score=47.99 Aligned_cols=44 Identities=16% Similarity=0.179 Sum_probs=38.5
Q ss_pred CcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcC
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQ 161 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p 161 (620)
.-+++|+.||.|.+++.+...|. ..+.++|+++.|++.-+.|..
T Consensus 160 g~~VLDvGcGsG~lai~aa~~g~-~~V~avDid~~al~~a~~n~~ 203 (288)
T TIGR00406 160 DKNVIDVGCGSGILSIAALKLGA-AKVVGIDIDPLAVESARKNAE 203 (288)
T ss_pred CCEEEEeCCChhHHHHHHHHcCC-CeEEEEECCHHHHHHHHHHHH
Confidence 35899999999999999988887 679999999999988887753
No 130
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=87.59 E-value=1.3 Score=43.75 Aligned_cols=74 Identities=22% Similarity=0.274 Sum_probs=52.0
Q ss_pred CcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcC-CCcccccchHHHHHHhhcccccccCcCCCCCCcc
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQ-ECSVIQDDCNLVLKSLLKGHTQHKGVSLPQKHEV 195 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p-~~~~~~~di~~~~~~~~~~~~~~~~~~~p~~~~v 195 (620)
..++||+-||.|.++.-+...+....+.++|+++..++..+.+.+ +...+.+|+.+. .. ..+.+
T Consensus 35 ~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~--------------~~-~~~~f 99 (240)
T TIGR02072 35 PASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSENVQFICGDAEKL--------------PL-EDSSF 99 (240)
T ss_pred CCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCCCCeEEecchhhC--------------CC-CCCce
Confidence 467999999999999999887753347999999999887777654 233444555322 11 23468
Q ss_pred ceEEecCCCC
Q psy12304 196 DLIVAGPPCQ 205 (620)
Q Consensus 196 D~i~gGpPCQ 205 (620)
|+|+....++
T Consensus 100 D~vi~~~~l~ 109 (240)
T TIGR02072 100 DLIVSNLALQ 109 (240)
T ss_pred eEEEEhhhhh
Confidence 9998775544
No 131
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=87.49 E-value=2.5 Score=42.70 Aligned_cols=42 Identities=7% Similarity=0.052 Sum_probs=34.0
Q ss_pred cceecccccccHHHHHHHh----cCCCccEEEEcCchhHHHHHHHhcC
Q psy12304 118 LKCLDLFSGCGGLMEGLCQ----AGVAKPCWSVELERSEAASYDANFQ 161 (620)
Q Consensus 118 l~~~dLFsG~Gg~s~Gl~~----aG~~~~~~a~e~d~~a~~ty~~N~p 161 (620)
-++||+-||.|.+...+.. .+. .+.++|+++.+++.-+.|..
T Consensus 58 ~~vLDlGcGtG~~~~~l~~~~~~~~~--~v~gvD~S~~ml~~A~~~~~ 103 (247)
T PRK15451 58 TQVYDLGCSLGAATLSVRRNIHHDNC--KIIAIDNSPAMIERCRRHID 103 (247)
T ss_pred CEEEEEcccCCHHHHHHHHhcCCCCC--eEEEEeCCHHHHHHHHHHHH
Confidence 4799999999999887765 243 48899999999988877753
No 132
>PRK06202 hypothetical protein; Provisional
Probab=86.96 E-value=1.6 Score=43.63 Aligned_cols=45 Identities=27% Similarity=0.310 Sum_probs=35.7
Q ss_pred CCcceecccccccHHHHHHHh----cCCCccEEEEcCchhHHHHHHHhc
Q psy12304 116 TPLKCLDLFSGCGGLMEGLCQ----AGVAKPCWSVELERSEAASYDANF 160 (620)
Q Consensus 116 ~~l~~~dLFsG~Gg~s~Gl~~----aG~~~~~~a~e~d~~a~~ty~~N~ 160 (620)
...+++||-||.|.++..|.. .|...-+.++|+++.+++.-+.+.
T Consensus 60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~ 108 (232)
T PRK06202 60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANP 108 (232)
T ss_pred CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcc
Confidence 456899999999999888764 354225899999999998877765
No 133
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=86.52 E-value=1.1 Score=44.00 Aligned_cols=72 Identities=18% Similarity=0.125 Sum_probs=49.2
Q ss_pred CCcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcCCC-----cccccchHHHHHHhhcccccccCcCCC
Q psy12304 116 TPLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQEC-----SVIQDDCNLVLKSLLKGHTQHKGVSLP 190 (620)
Q Consensus 116 ~~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p~~-----~~~~~di~~~~~~~~~~~~~~~~~~~p 190 (620)
...+++|+.||.|.++.-+...+. .+.++|+++.+++.-+.|+... .+..+|.. ..++
T Consensus 78 ~~~~VLeiG~GsG~~t~~la~~~~--~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~---------------~~~~ 140 (212)
T PRK00312 78 PGDRVLEIGTGSGYQAAVLAHLVR--RVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGW---------------KGWP 140 (212)
T ss_pred CCCEEEEECCCccHHHHHHHHHhC--EEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcc---------------cCCC
Confidence 346899999999999987776653 4889999999988777775432 22222221 1123
Q ss_pred CCCccceEEecCCC
Q psy12304 191 QKHEVDLIVAGPPC 204 (620)
Q Consensus 191 ~~~~vD~i~gGpPC 204 (620)
..+.+|+|+...+|
T Consensus 141 ~~~~fD~I~~~~~~ 154 (212)
T PRK00312 141 AYAPFDRILVTAAA 154 (212)
T ss_pred cCCCcCEEEEccCc
Confidence 33579999987765
No 134
>KOG3191|consensus
Probab=86.50 E-value=2.2 Score=40.82 Aligned_cols=135 Identities=17% Similarity=0.188 Sum_probs=77.5
Q ss_pred CcceecccccccHHHHHHHh--cCCCccEEEEcCchhHHHH----HHHhcCCCcccccchHHHHHHhhcccccccCcCCC
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQ--AGVAKPCWSVELERSEAAS----YDANFQECSVIQDDCNLVLKSLLKGHTQHKGVSLP 190 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~--aG~~~~~~a~e~d~~a~~t----y~~N~p~~~~~~~di~~~~~~~~~~~~~~~~~~~p 190 (620)
..-++++=||.|-.+.-|.+ .+. .+..|.|+++.|+++ -+.|--+..+++.|+.+-+
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~-~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~l---------------- 106 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQ-ALYLATDINPEALEATLETARCNRVHIDVVRTDLLSGL---------------- 106 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCC-ceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhhh----------------
Confidence 44589999999999987776 344 578999999999876 3445434445555554321
Q ss_pred CCCccceEEecCCCCcccccccc-ch-----hhhcccccchHHHHHHHhh-hcCCcEEEEccccccccccchhHHHHHHH
Q psy12304 191 QKHEVDLIVAGPPCQGFSQLNRA-RE-----LEKSKLKNGLVFTFLSFCD-LFQPKYIILENVTGLVHFNKNEILQCIFH 263 (620)
Q Consensus 191 ~~~~vD~i~gGpPCQ~fS~~~~~-~~-----~~~~d~r~~L~~~~~~~i~-~~~P~~~v~ENV~gl~~~~~~~~~~~i~~ 263 (620)
..++||+++.-||=-+-|---.. .+ .+..+-| ...-.++..+. .+-|+-++.=++-. ...-++++.
T Consensus 107 ~~~~VDvLvfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr-~v~d~ll~~v~~iLSp~Gv~Ylv~~~------~N~p~ei~k 179 (209)
T KOG3191|consen 107 RNESVDVLVFNPPYVPTSDEEIGDEGIASAWAGGKDGR-EVTDRLLPQVPDILSPRGVFYLVALR------ANKPKEILK 179 (209)
T ss_pred ccCCccEEEECCCcCcCCcccchhHHHHHHHhcCcchH-HHHHHHHhhhhhhcCcCceEEeeehh------hcCHHHHHH
Confidence 12689999999996555421110 00 0000111 11222333333 23466555443321 122567778
Q ss_pred HHHcCCCEEEEE
Q psy12304 264 CLLKMNYQVTFD 275 (620)
Q Consensus 264 ~l~~~GY~v~~~ 275 (620)
.++..||.++..
T Consensus 180 ~l~~~g~~~~~~ 191 (209)
T KOG3191|consen 180 ILEKKGYGVRIA 191 (209)
T ss_pred HHhhcccceeEE
Confidence 888999987654
No 135
>PRK04148 hypothetical protein; Provisional
Probab=86.27 E-value=2 Score=39.19 Aligned_cols=51 Identities=14% Similarity=0.071 Sum_probs=41.6
Q ss_pred CcceecccccccH-HHHHHHhcCCCccEEEEcCchhHHHHHHHhcCCCcccccchH
Q psy12304 117 PLKCLDLFSGCGG-LMEGLCQAGVAKPCWSVELERSEAASYDANFQECSVIQDDCN 171 (620)
Q Consensus 117 ~l~~~dLFsG~Gg-~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p~~~~~~~di~ 171 (620)
..+++|+=+|.|. ++.-|.+.|+ + +.|+|+++.|++..+.+. ..++.+|+.
T Consensus 17 ~~kileIG~GfG~~vA~~L~~~G~-~-ViaIDi~~~aV~~a~~~~--~~~v~dDlf 68 (134)
T PRK04148 17 NKKIVELGIGFYFKVAKKLKESGF-D-VIVIDINEKAVEKAKKLG--LNAFVDDLF 68 (134)
T ss_pred CCEEEEEEecCCHHHHHHHHHCCC-E-EEEEECCHHHHHHHHHhC--CeEEECcCC
Confidence 4689999999986 8999999997 4 889999999999888774 445556664
No 136
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=86.16 E-value=0.76 Score=45.30 Aligned_cols=69 Identities=17% Similarity=0.237 Sum_probs=46.2
Q ss_pred cceecccccccHHHHHHHhc-CCCccEEEEcCchhHHHHHHHhcCCCcccccchHHH--HHHhhcccccccCcCCCCCCc
Q psy12304 118 LKCLDLFSGCGGLMEGLCQA-GVAKPCWSVELERSEAASYDANFQECSVIQDDCNLV--LKSLLKGHTQHKGVSLPQKHE 194 (620)
Q Consensus 118 l~~~dLFsG~Gg~s~Gl~~a-G~~~~~~a~e~d~~a~~ty~~N~p~~~~~~~di~~~--~~~~~~~~~~~~~~~~p~~~~ 194 (620)
-++|||-||.|+++.-+.+. |-...+.|+|+++. .+.++..++++|+.+. +..+.. .+ ..+.
T Consensus 53 ~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~------~~~~~v~~i~~D~~~~~~~~~i~~--------~~-~~~~ 117 (209)
T PRK11188 53 MTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM------DPIVGVDFLQGDFRDELVLKALLE--------RV-GDSK 117 (209)
T ss_pred CEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc------cCCCCcEEEecCCCChHHHHHHHH--------Hh-CCCC
Confidence 37999999999999877654 32236899999882 3456777788887653 222211 11 1247
Q ss_pred cceEEec
Q psy12304 195 VDLIVAG 201 (620)
Q Consensus 195 vD~i~gG 201 (620)
+|+|+..
T Consensus 118 ~D~V~S~ 124 (209)
T PRK11188 118 VQVVMSD 124 (209)
T ss_pred CCEEecC
Confidence 8999875
No 137
>PTZ00146 fibrillarin; Provisional
Probab=86.09 E-value=15 Score=38.06 Aligned_cols=148 Identities=14% Similarity=0.095 Sum_probs=81.8
Q ss_pred CcceecccccccHHHHHHHhc-CCCccEEEEcCchhHHHHHHH---hcCCCcccccchHHHHHHhhcccccccCcCCCCC
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQA-GVAKPCWSVELERSEAASYDA---NFQECSVIQDDCNLVLKSLLKGHTQHKGVSLPQK 192 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~a-G~~~~~~a~e~d~~a~~ty~~---N~p~~~~~~~di~~~~~~~~~~~~~~~~~~~p~~ 192 (620)
..+||||.||.|.++.-+... |-.-.++|+|+++.+.+-+.. ..++...+.+|+..-.. ...+ .
T Consensus 133 G~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~-----------y~~~-~ 200 (293)
T PTZ00146 133 GSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQK-----------YRML-V 200 (293)
T ss_pred CCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhh-----------hhcc-c
Confidence 358999999999999888763 322369999999765422221 12445555566542100 0011 1
Q ss_pred CccceEEecCCCCccccccccchhhhcccccchHHHHHHHhhhcCCcE-EEE-cccccccc-ccchhHHHHHHHHHHcCC
Q psy12304 193 HEVDLIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLSFCDLFQPKY-IIL-ENVTGLVH-FNKNEILQCIFHCLLKMN 269 (620)
Q Consensus 193 ~~vD~i~gGpPCQ~fS~~~~~~~~~~~d~r~~L~~~~~~~i~~~~P~~-~v~-ENV~gl~~-~~~~~~~~~i~~~l~~~G 269 (620)
+.+|+|+.... |. |....+..+ +-..++|.- |++ ..-..+-. ......|+.-++.|.+.|
T Consensus 201 ~~vDvV~~Dva-~p-------------dq~~il~~n---a~r~LKpGG~~vI~ika~~id~g~~pe~~f~~ev~~L~~~G 263 (293)
T PTZ00146 201 PMVDVIFADVA-QP-------------DQARIVALN---AQYFLKNGGHFIISIKANCIDSTAKPEVVFASEVQKLKKEG 263 (293)
T ss_pred CCCCEEEEeCC-Cc-------------chHHHHHHH---HHHhccCCCEEEEEEeccccccCCCHHHHHHHHHHHHHHcC
Confidence 36899976653 20 111112222 234577754 233 22222211 111244555468899999
Q ss_pred CEEEEEEEecCCCCCcccccEEEEEEecC
Q psy12304 270 YQVTFDVLQSGNYGVAQSRNRVVILASKP 298 (620)
Q Consensus 270 Y~v~~~~l~A~~yGvPQ~R~R~fivg~~~ 298 (620)
|++...+ +- -|..|...+++|..+
T Consensus 264 F~~~e~v-~L----~Py~~~h~~v~~~~~ 287 (293)
T PTZ00146 264 LKPKEQL-TL----EPFERDHAVVIGVYR 287 (293)
T ss_pred CceEEEE-ec----CCccCCcEEEEEEEc
Confidence 9865332 22 567899999998764
No 138
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=86.06 E-value=1.1 Score=46.75 Aligned_cols=42 Identities=19% Similarity=0.248 Sum_probs=30.9
Q ss_pred CcceecccccccHHHHHHHh--------cCCCccEEEEcCchhHHHHHHHh
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQ--------AGVAKPCWSVELERSEAASYDAN 159 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~--------aG~~~~~~a~e~d~~a~~ty~~N 159 (620)
.-+++|.+||.|+|-..+.. ..- ..++++|+|+.++..-+.|
T Consensus 47 ~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~-~~i~G~ei~~~~~~la~~n 96 (311)
T PF02384_consen 47 GDSVLDPACGSGGFLVAAMEYIKEKRNKIKE-INIYGIEIDPEAVALAKLN 96 (311)
T ss_dssp TEEEEETT-TTSHHHHHHHHHHHTCHHHHCC-EEEEEEES-HHHHHHHHHH
T ss_pred cceeechhhhHHHHHHHHHHhhccccccccc-ceeEeecCcHHHHHHHHhh
Confidence 45799999999998877654 122 4689999999998876665
No 139
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=85.91 E-value=1.9 Score=41.83 Aligned_cols=69 Identities=17% Similarity=0.078 Sum_probs=46.0
Q ss_pred CcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcC-----CCcccccchHHHHHHhhcccccccCcCCCC
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQ-----ECSVIQDDCNLVLKSLLKGHTQHKGVSLPQ 191 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p-----~~~~~~~di~~~~~~~~~~~~~~~~~~~p~ 191 (620)
..+++|+-||+|.+++-+....-...+.++|.++.+++.-+.|.. +..+..+|+.++ +.
T Consensus 46 g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~----------------~~ 109 (187)
T PRK00107 46 GERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEF----------------GQ 109 (187)
T ss_pred CCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhC----------------CC
Confidence 468999999999999877653211358999999988877666532 233444454332 11
Q ss_pred CCccceEEec
Q psy12304 192 KHEVDLIVAG 201 (620)
Q Consensus 192 ~~~vD~i~gG 201 (620)
.+.+|+|++.
T Consensus 110 ~~~fDlV~~~ 119 (187)
T PRK00107 110 EEKFDVVTSR 119 (187)
T ss_pred CCCccEEEEc
Confidence 3479999963
No 140
>KOG2187|consensus
Probab=85.35 E-value=1.3 Score=48.81 Aligned_cols=41 Identities=27% Similarity=0.356 Sum_probs=34.6
Q ss_pred cceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhc
Q psy12304 118 LKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANF 160 (620)
Q Consensus 118 l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~ 160 (620)
-.++|+|||.|-+++.+.. |+ ..+.++|++++|+.--+.|-
T Consensus 385 k~llDv~CGTG~iglala~-~~-~~ViGvEi~~~aV~dA~~nA 425 (534)
T KOG2187|consen 385 KTLLDVCCGTGTIGLALAR-GV-KRVIGVEISPDAVEDAEKNA 425 (534)
T ss_pred cEEEEEeecCCceehhhhc-cc-cceeeeecChhhcchhhhcc
Confidence 4689999999999998876 65 67999999999988777664
No 141
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=85.30 E-value=3.3 Score=42.89 Aligned_cols=82 Identities=17% Similarity=0.294 Sum_probs=56.7
Q ss_pred cceecccccccHHHHHHHhcCC-CccEEEEcCchhHHHHHHHhcCC-----CcccccchHHHHHHhhcccccccCcCCCC
Q psy12304 118 LKCLDLFSGCGGLMEGLCQAGV-AKPCWSVELERSEAASYDANFQE-----CSVIQDDCNLVLKSLLKGHTQHKGVSLPQ 191 (620)
Q Consensus 118 l~~~dLFsG~Gg~s~Gl~~aG~-~~~~~a~e~d~~a~~ty~~N~p~-----~~~~~~di~~~~~~~~~~~~~~~~~~~p~ 191 (620)
-+++|++||.||=+.-+.+... .-.++|+|+++..+...+.|.-. ..+...|........ .
T Consensus 87 ~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~-------------~ 153 (283)
T PF01189_consen 87 ERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKK-------------P 153 (283)
T ss_dssp SEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHH-------------H
T ss_pred ccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccc-------------c
Confidence 4599999999998876665322 23589999999999999887532 223334554442211 1
Q ss_pred CCccceEEecCCCCccccccc
Q psy12304 192 KHEVDLIVAGPPCQGFSQLNR 212 (620)
Q Consensus 192 ~~~vD~i~gGpPCQ~fS~~~~ 212 (620)
...+|.|..-.||.|.....+
T Consensus 154 ~~~fd~VlvDaPCSg~G~i~r 174 (283)
T PF01189_consen 154 ESKFDRVLVDAPCSGLGTIRR 174 (283)
T ss_dssp TTTEEEEEEECSCCCGGGTTT
T ss_pred ccccchhhcCCCccchhhhhh
Confidence 125899999999999866655
No 142
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=84.85 E-value=1.3 Score=43.37 Aligned_cols=43 Identities=21% Similarity=0.210 Sum_probs=32.7
Q ss_pred cceecccccccHHHHHHHhc-CCCccEEEEcCchhHHHHHHHhc
Q psy12304 118 LKCLDLFSGCGGLMEGLCQA-GVAKPCWSVELERSEAASYDANF 160 (620)
Q Consensus 118 l~~~dLFsG~Gg~s~Gl~~a-G~~~~~~a~e~d~~a~~ty~~N~ 160 (620)
-++||+.||.|.++.-+.+. +-...++++|+++.+++.-+.|+
T Consensus 74 ~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l 117 (205)
T PRK13944 74 MKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNI 117 (205)
T ss_pred CEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHH
Confidence 47999999999999777653 21125899999999877666665
No 143
>PRK06922 hypothetical protein; Provisional
Probab=84.79 E-value=1.8 Score=49.48 Aligned_cols=76 Identities=18% Similarity=0.235 Sum_probs=50.6
Q ss_pred CcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcCC----CcccccchHHHHHHhhcccccccCcCCCCC
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQE----CSVIQDDCNLVLKSLLKGHTQHKGVSLPQK 192 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p~----~~~~~~di~~~~~~~~~~~~~~~~~~~p~~ 192 (620)
..+++|+.||.|.++..+....-..-+.++|+++.+++..+.+.+. ..++.+|+.++ ...+ ..
T Consensus 419 g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dL------------p~~f-ed 485 (677)
T PRK06922 419 GDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINL------------SSSF-EK 485 (677)
T ss_pred CCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhC------------cccc-CC
Confidence 4689999999999988776532112578999999999888776432 23344555432 0012 24
Q ss_pred CccceEEecCCCC
Q psy12304 193 HEVDLIVAGPPCQ 205 (620)
Q Consensus 193 ~~vD~i~gGpPCQ 205 (620)
+.+|+++.+++-+
T Consensus 486 eSFDvVVsn~vLH 498 (677)
T PRK06922 486 ESVDTIVYSSILH 498 (677)
T ss_pred CCEEEEEEchHHH
Confidence 5799999877644
No 144
>PLN02244 tocopherol O-methyltransferase
Probab=84.79 E-value=1.7 Score=46.23 Aligned_cols=42 Identities=26% Similarity=0.327 Sum_probs=34.1
Q ss_pred CCcceecccccccHHHHHHHhc-CCCccEEEEcCchhHHHHHHHh
Q psy12304 116 TPLKCLDLFSGCGGLMEGLCQA-GVAKPCWSVELERSEAASYDAN 159 (620)
Q Consensus 116 ~~l~~~dLFsG~Gg~s~Gl~~a-G~~~~~~a~e~d~~a~~ty~~N 159 (620)
..-++||+.||.|+++.-|... |. -+.++|+++..++.-+.+
T Consensus 118 ~~~~VLDiGCG~G~~~~~La~~~g~--~v~gvD~s~~~i~~a~~~ 160 (340)
T PLN02244 118 RPKRIVDVGCGIGGSSRYLARKYGA--NVKGITLSPVQAARANAL 160 (340)
T ss_pred CCCeEEEecCCCCHHHHHHHHhcCC--EEEEEECCHHHHHHHHHH
Confidence 3457999999999999988875 54 478999999988766554
No 145
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=84.57 E-value=1.5 Score=43.49 Aligned_cols=39 Identities=18% Similarity=0.182 Sum_probs=34.9
Q ss_pred cceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHH
Q psy12304 118 LKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDA 158 (620)
Q Consensus 118 l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~ 158 (620)
-++||+.||.|--++-|...|+ + |.|+|+++.|++...+
T Consensus 36 ~rvLd~GCG~G~da~~LA~~G~-~-V~gvD~S~~Ai~~~~~ 74 (213)
T TIGR03840 36 ARVFVPLCGKSLDLAWLAEQGH-R-VLGVELSEIAVEQFFA 74 (213)
T ss_pred CeEEEeCCCchhHHHHHHhCCC-e-EEEEeCCHHHHHHHHH
Confidence 4899999999999999999998 4 8899999999997533
No 146
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=84.30 E-value=0.65 Score=44.81 Aligned_cols=80 Identities=15% Similarity=0.118 Sum_probs=56.3
Q ss_pred CCCcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcCCCcccccchHHHHHHhhcccccccCcCCCCCCc
Q psy12304 115 DTPLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQECSVIQDDCNLVLKSLLKGHTQHKGVSLPQKHE 194 (620)
Q Consensus 115 ~~~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p~~~~~~~di~~~~~~~~~~~~~~~~~~~p~~~~ 194 (620)
-+..+||||.||.|--+..-..+|. .-+++.|+++.+.+..+.|-.. .. -+|...- ...+-.++.
T Consensus 78 VrgkrVLd~gagsgLvaIAaa~aGA-~~v~a~d~~P~~~~ai~lNa~a-ng--v~i~~~~-----------~d~~g~~~~ 142 (218)
T COG3897 78 VRGKRVLDLGAGSGLVAIAAARAGA-AEVVAADIDPWLEQAIRLNAAA-NG--VSILFTH-----------ADLIGSPPA 142 (218)
T ss_pred cccceeeecccccChHHHHHHHhhh-HHHHhcCCChHHHHHhhcchhh-cc--ceeEEee-----------ccccCCCcc
Confidence 4567899999999999999999998 7799999999999999888532 11 0111100 001113458
Q ss_pred cceEEecCCCCcccc
Q psy12304 195 VDLIVAGPPCQGFSQ 209 (620)
Q Consensus 195 vD~i~gGpPCQ~fS~ 209 (620)
+|+|.+|-=|=+.+.
T Consensus 143 ~Dl~LagDlfy~~~~ 157 (218)
T COG3897 143 FDLLLAGDLFYNHTE 157 (218)
T ss_pred eeEEEeeceecCchH
Confidence 999999977754443
No 147
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=84.06 E-value=1.7 Score=45.96 Aligned_cols=37 Identities=22% Similarity=0.134 Sum_probs=31.7
Q ss_pred cceecccccccHHHHHHHhcCCCccEEEEcCchhHHHH
Q psy12304 118 LKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAAS 155 (620)
Q Consensus 118 l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~t 155 (620)
-+++|+-||.|.++..+...|. ..+.++|.++....-
T Consensus 124 ~~VLDIGCG~G~~~~~la~~g~-~~V~GiD~S~~~l~q 160 (322)
T PRK15068 124 RTVLDVGCGNGYHMWRMLGAGA-KLVVGIDPSQLFLCQ 160 (322)
T ss_pred CEEEEeccCCcHHHHHHHHcCC-CEEEEEcCCHHHHHH
Confidence 4899999999999999999887 568999999876543
No 148
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=84.04 E-value=1.8 Score=43.97 Aligned_cols=71 Identities=24% Similarity=0.341 Sum_probs=54.5
Q ss_pred CcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhc---CCCcccccchHHHHHHhhcccccccCcCCCCCC
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANF---QECSVIQDDCNLVLKSLLKGHTQHKGVSLPQKH 193 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~---p~~~~~~~di~~~~~~~~~~~~~~~~~~~p~~~ 193 (620)
.=+++++=+|.|+|+.-|.+.|. + +.|+|+|+.-+..++..+ ++..++.+|+-.+ ++|...
T Consensus 31 ~d~VlEIGpG~GaLT~~Ll~~~~-~-v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~--------------d~~~l~ 94 (259)
T COG0030 31 GDNVLEIGPGLGALTEPLLERAA-R-VTAIEIDRRLAEVLKERFAPYDNLTVINGDALKF--------------DFPSLA 94 (259)
T ss_pred CCeEEEECCCCCHHHHHHHhhcC-e-EEEEEeCHHHHHHHHHhcccccceEEEeCchhcC--------------cchhhc
Confidence 34799999999999999999986 4 899999999999999886 3456777776433 222111
Q ss_pred ccceEEecCC
Q psy12304 194 EVDLIVAGPP 203 (620)
Q Consensus 194 ~vD~i~gGpP 203 (620)
..+.++|-.|
T Consensus 95 ~~~~vVaNlP 104 (259)
T COG0030 95 QPYKVVANLP 104 (259)
T ss_pred CCCEEEEcCC
Confidence 4578888888
No 149
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=83.73 E-value=1.2 Score=47.93 Aligned_cols=58 Identities=21% Similarity=0.285 Sum_probs=41.7
Q ss_pred CCcceecccccccH--HHHHHHhcCCCccEEEEcCchhHHHHHHHhc--CC-----CcccccchHHHH
Q psy12304 116 TPLKCLDLFSGCGG--LMEGLCQAGVAKPCWSVELERSEAASYDANF--QE-----CSVIQDDCNLVL 174 (620)
Q Consensus 116 ~~l~~~dLFsG~Gg--~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~--p~-----~~~~~~di~~~~ 174 (620)
.+++++|-+||+|- +..+.|-+|. +-++++|+|+.|++..+.|. .+ ..+.+.|.+.++
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~-~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll 115 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGV-DKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLL 115 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSE-CEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHH
T ss_pred CCceEEeccccccHHHHHHHHHcCCC-CEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHh
Confidence 46899999999996 5577776787 67999999999999999993 11 235566887765
No 150
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=83.11 E-value=1.5 Score=45.51 Aligned_cols=40 Identities=23% Similarity=0.199 Sum_probs=35.2
Q ss_pred ceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhc
Q psy12304 119 KCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANF 160 (620)
Q Consensus 119 ~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~ 160 (620)
++||+-||.|..++-|...|+ + +.|+|+++.|++..+.|.
T Consensus 123 ~vLDlGcG~G~~~~~la~~g~-~-V~avD~s~~ai~~~~~~~ 162 (287)
T PRK12335 123 KALDLGCGQGRNSLYLALLGF-D-VTAVDINQQSLENLQEIA 162 (287)
T ss_pred CEEEeCCCCCHHHHHHHHCCC-E-EEEEECCHHHHHHHHHHH
Confidence 799999999999999988897 4 889999999988776654
No 151
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=82.97 E-value=2.6 Score=41.16 Aligned_cols=46 Identities=17% Similarity=0.172 Sum_probs=38.0
Q ss_pred CCcceecccccccHHHHHHHhcCCC-ccEEEEcCchhHHHHHHHhcC
Q psy12304 116 TPLKCLDLFSGCGGLMEGLCQAGVA-KPCWSVELERSEAASYDANFQ 161 (620)
Q Consensus 116 ~~l~~~dLFsG~Gg~s~Gl~~aG~~-~~~~a~e~d~~a~~ty~~N~p 161 (620)
...+++|+.||.|.++.-+...+.. .-+.++|+++.+++.-+.+.+
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~ 85 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE 85 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc
Confidence 4568999999999999988887651 258899999999988888764
No 152
>KOG2078|consensus
Probab=82.94 E-value=0.87 Score=48.81 Aligned_cols=54 Identities=19% Similarity=0.279 Sum_probs=45.0
Q ss_pred ceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcCC-------CcccccchHHHH
Q psy12304 119 KCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQE-------CSVIQDDCNLVL 174 (620)
Q Consensus 119 ~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p~-------~~~~~~di~~~~ 174 (620)
.+.|+|||+|-+++-+..-|. .++|+|.++.+.+.+++|.+- .++++.|..+++
T Consensus 252 vv~D~FaGvGPfa~Pa~kK~c--rV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~Fl 312 (495)
T KOG2078|consen 252 VVCDVFAGVGPFALPAAKKGC--RVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDFL 312 (495)
T ss_pred hhhhhhcCcCccccchhhcCc--EEEecCCCHHHHHHHHHhccccccchhheeeecccHHHHh
Confidence 589999999999988888885 699999999999999999863 345666766665
No 153
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=82.87 E-value=3 Score=41.06 Aligned_cols=43 Identities=21% Similarity=0.230 Sum_probs=36.1
Q ss_pred CCcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhc
Q psy12304 116 TPLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANF 160 (620)
Q Consensus 116 ~~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~ 160 (620)
...+++|+.||.|.+..-+...|. + +.++|.++.+++..+.|.
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~~-~-v~~iD~s~~~~~~a~~~~ 87 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLGA-N-VTGIDASEENIEVAKLHA 87 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcCC-e-EEEEeCCHHHHHHHHHHH
Confidence 357899999999999998888886 5 889999998887776654
No 154
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=82.78 E-value=1.7 Score=45.77 Aligned_cols=138 Identities=22% Similarity=0.284 Sum_probs=82.0
Q ss_pred ceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcCCCc-----cccc-chHHHHHHhhcccccccCcCCCCC
Q psy12304 119 KCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQECS-----VIQD-DCNLVLKSLLKGHTQHKGVSLPQK 192 (620)
Q Consensus 119 ~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p~~~-----~~~~-di~~~~~~~~~~~~~~~~~~~p~~ 192 (620)
.++|=|||.||+-+-...-|. . +.++|+|...+.=-+.|+..-. ++.. |+. .+|.+
T Consensus 200 ~vlDPFcGTGgiLiEagl~G~-~-viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~----------------~lpl~ 261 (347)
T COG1041 200 LVLDPFCGTGGILIEAGLMGA-R-VIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDAT----------------NLPLR 261 (347)
T ss_pred EeecCcCCccHHHHhhhhcCc-e-EeecchHHHHHhhhhhhhhhhCcCceeEEEecccc----------------cCCCC
Confidence 699999999999888877887 4 7788999999988888874321 1111 322 33433
Q ss_pred Cc-cceEEecCCCCccccccccchhhhcccccchHHHHHHHhh-hcCCcEEEEccccccccccchhHHHHHHHHHHcCCC
Q psy12304 193 HE-VDLIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLSFCD-LFQPKYIILENVTGLVHFNKNEILQCIFHCLLKMNY 270 (620)
Q Consensus 193 ~~-vD~i~gGpPCQ~fS~~~~~~~~~~~d~r~~L~~~~~~~i~-~~~P~~~v~ENV~gl~~~~~~~~~~~i~~~l~~~GY 270 (620)
++ +|-|+.-||= |-|...+ ...-..|+.++++-.. .+++.-++.==.+ ......+.++||
T Consensus 262 ~~~vdaIatDPPY-Grst~~~------~~~l~~Ly~~~le~~~evLk~gG~~vf~~p-----------~~~~~~~~~~~f 323 (347)
T COG1041 262 DNSVDAIATDPPY-GRSTKIK------GEGLDELYEEALESASEVLKPGGRIVFAAP-----------RDPRHELEELGF 323 (347)
T ss_pred CCccceEEecCCC-Ccccccc------cccHHHHHHHHHHHHHHHhhcCcEEEEecC-----------CcchhhHhhcCc
Confidence 44 9999999992 2222111 1123457777766443 3455322211111 223456778899
Q ss_pred EEEEEEEecCCCCCcccccEEEEEEe
Q psy12304 271 QVTFDVLQSGNYGVAQSRNRVVILAS 296 (620)
Q Consensus 271 ~v~~~~l~A~~yGvPQ~R~R~fivg~ 296 (620)
.+...+..= +-++=.|.|.+..
T Consensus 324 ~v~~~~~~~----~H~sLtR~i~v~~ 345 (347)
T COG1041 324 KVLGRFTMR----VHGSLTRVIYVVR 345 (347)
T ss_pred eEEEEEEEe----ecCceEEEEEEEe
Confidence 876554332 3334456666543
No 155
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=82.69 E-value=2.9 Score=42.01 Aligned_cols=46 Identities=17% Similarity=0.237 Sum_probs=38.3
Q ss_pred CCcceecccccccHHHHHHHhc-CCCccEEEEcCchhHHHHHHHhcCC
Q psy12304 116 TPLKCLDLFSGCGGLMEGLCQA-GVAKPCWSVELERSEAASYDANFQE 162 (620)
Q Consensus 116 ~~l~~~dLFsG~Gg~s~Gl~~a-G~~~~~~a~e~d~~a~~ty~~N~p~ 162 (620)
+..++||+.||.|-+++.+.+. |- --+.++|+++.-++.-+....+
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g~-g~v~~~D~s~~ML~~a~~k~~~ 97 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVGT-GEVVGLDISESMLEVAREKLKK 97 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcCC-ceEEEEECCHHHHHHHHHHhhc
Confidence 4679999999999999999874 43 3488999999998888877765
No 156
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=82.43 E-value=2.4 Score=43.26 Aligned_cols=44 Identities=20% Similarity=0.235 Sum_probs=33.8
Q ss_pred CcceecccccccHHHHHHHhc-CCCccEEEEcCchhHHHHHHHhc
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQA-GVAKPCWSVELERSEAASYDANF 160 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~a-G~~~~~~a~e~d~~a~~ty~~N~ 160 (620)
.-++||+.||.|.++.-+... |....+.++|+++..++.-+.+.
T Consensus 74 ~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~ 118 (261)
T PLN02233 74 GDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQ 118 (261)
T ss_pred CCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHh
Confidence 357999999999998877653 43125889999999988776543
No 157
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=82.17 E-value=2.1 Score=41.47 Aligned_cols=72 Identities=24% Similarity=0.314 Sum_probs=48.1
Q ss_pred cceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcCCCcccccchHHHHHHhhcccccccCcCCCCCCccce
Q psy12304 118 LKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQECSVIQDDCNLVLKSLLKGHTQHKGVSLPQKHEVDL 197 (620)
Q Consensus 118 l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p~~~~~~~di~~~~~~~~~~~~~~~~~~~p~~~~vD~ 197 (620)
-+++|+.||.|.+..-+...+. ..++++|+++.+++..+.+ +...+.+|+.+.+ ..++ .+.+|+
T Consensus 15 ~~iLDiGcG~G~~~~~l~~~~~-~~~~giD~s~~~i~~a~~~--~~~~~~~d~~~~l------------~~~~-~~sfD~ 78 (194)
T TIGR02081 15 SRVLDLGCGDGELLALLRDEKQ-VRGYGIEIDQDGVLACVAR--GVNVIQGDLDEGL------------EAFP-DKSFDY 78 (194)
T ss_pred CEEEEeCCCCCHHHHHHHhccC-CcEEEEeCCHHHHHHHHHc--CCeEEEEEhhhcc------------cccC-CCCcCE
Confidence 3799999999999988865543 2468999999888776543 3445556654310 0111 246899
Q ss_pred EEecCCCC
Q psy12304 198 IVAGPPCQ 205 (620)
Q Consensus 198 i~gGpPCQ 205 (620)
|+.....+
T Consensus 79 Vi~~~~l~ 86 (194)
T TIGR02081 79 VILSQTLQ 86 (194)
T ss_pred EEEhhHhH
Confidence 99876543
No 158
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=82.09 E-value=4.5 Score=40.22 Aligned_cols=43 Identities=16% Similarity=0.180 Sum_probs=35.9
Q ss_pred CCcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhc
Q psy12304 116 TPLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANF 160 (620)
Q Consensus 116 ~~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~ 160 (620)
...++||+.||.|.++.-+...|. + +.++|+++.+++.-+.|+
T Consensus 48 ~~~~vLdiG~G~G~~~~~l~~~~~-~-v~~iD~s~~~~~~a~~~~ 90 (233)
T PRK05134 48 FGKRVLDVGCGGGILSESMARLGA-D-VTGIDASEENIEVARLHA 90 (233)
T ss_pred CCCeEEEeCCCCCHHHHHHHHcCC-e-EEEEcCCHHHHHHHHHHH
Confidence 356799999999999998888886 4 789999999987766654
No 159
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=82.05 E-value=2.3 Score=37.16 Aligned_cols=43 Identities=12% Similarity=0.072 Sum_probs=33.6
Q ss_pred cceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhc
Q psy12304 118 LKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANF 160 (620)
Q Consensus 118 l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~ 160 (620)
.+++|+.||.|.++.-+....-...++++|+++.+++.-+.|.
T Consensus 21 ~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~ 63 (124)
T TIGR02469 21 DVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNA 63 (124)
T ss_pred CEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHH
Confidence 4899999999999988876421135899999999988776653
No 160
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=82.01 E-value=2.7 Score=41.59 Aligned_cols=45 Identities=22% Similarity=0.197 Sum_probs=37.1
Q ss_pred CcceecccccccHHHHHHHhcCC-CccEEEEcCchhHHHHHHHhcC
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQAGV-AKPCWSVELERSEAASYDANFQ 161 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~aG~-~~~~~a~e~d~~a~~ty~~N~p 161 (620)
..+++|+.||.|.++.-+...+- ...+.++|+++.+.+.-+.++.
T Consensus 52 ~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~ 97 (239)
T PRK00216 52 GDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLR 97 (239)
T ss_pred CCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhc
Confidence 46899999999999998887762 1468999999999888887764
No 161
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=81.90 E-value=1.2 Score=45.51 Aligned_cols=55 Identities=25% Similarity=0.311 Sum_probs=45.2
Q ss_pred CCcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcC---CCcccccchHH
Q psy12304 116 TPLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQ---ECSVIQDDCNL 172 (620)
Q Consensus 116 ~~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p---~~~~~~~di~~ 172 (620)
....++|+.+|.|.++.-|...| +-+.++|+|+..++.++..+. +..++.+|+.+
T Consensus 30 ~~~~VlEiGpG~G~lT~~L~~~~--~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~ 87 (262)
T PF00398_consen 30 EGDTVLEIGPGPGALTRELLKRG--KRVIAVEIDPDLAKHLKERFASNPNVEVINGDFLK 87 (262)
T ss_dssp TTSEEEEESSTTSCCHHHHHHHS--SEEEEEESSHHHHHHHHHHCTTCSSEEEEES-TTT
T ss_pred CCCEEEEeCCCCccchhhHhccc--CcceeecCcHhHHHHHHHHhhhcccceeeecchhc
Confidence 45689999999999999999988 468999999999999999764 45667777643
No 162
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=81.80 E-value=2.2 Score=42.31 Aligned_cols=39 Identities=21% Similarity=0.131 Sum_probs=34.9
Q ss_pred CcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHH
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYD 157 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~ 157 (620)
.-++||+.||.|--++-|.+.|+ + |.|+|+++.|++...
T Consensus 38 ~~rvL~~gCG~G~da~~LA~~G~-~-V~avD~s~~Ai~~~~ 76 (218)
T PRK13255 38 GSRVLVPLCGKSLDMLWLAEQGH-E-VLGVELSELAVEQFF 76 (218)
T ss_pred CCeEEEeCCCChHhHHHHHhCCC-e-EEEEccCHHHHHHHH
Confidence 35899999999999999999998 4 889999999999764
No 163
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=81.59 E-value=1.4 Score=48.64 Aligned_cols=101 Identities=29% Similarity=0.343 Sum_probs=59.1
Q ss_pred CCcceecccccccHHHHHHHhcC----CCccEEEEcCchhHHHHHHH--hcC----CCcccccchHHHHHHhhccccccc
Q psy12304 116 TPLKCLDLFSGCGGLMEGLCQAG----VAKPCWSVELERSEAASYDA--NFQ----ECSVIQDDCNLVLKSLLKGHTQHK 185 (620)
Q Consensus 116 ~~l~~~dLFsG~Gg~s~Gl~~aG----~~~~~~a~e~d~~a~~ty~~--N~p----~~~~~~~di~~~~~~~~~~~~~~~ 185 (620)
+...|+|+=||-|-|+.-.-+|| ...-++|+|.++.|..+.+. |.. ...++.+|++++
T Consensus 186 ~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v------------ 253 (448)
T PF05185_consen 186 KDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREV------------ 253 (448)
T ss_dssp TT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTS------------
T ss_pred cceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCC------------
Confidence 45789999999999998777776 12469999999999988743 222 234566666543
Q ss_pred CcCCCCCCccceEEecCCCCccccccccchhhhcccccchHHHHHHHhh-hcCCcEEEEccc
Q psy12304 186 GVSLPQKHEVDLIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLSFCD-LFQPKYIILENV 246 (620)
Q Consensus 186 ~~~~p~~~~vD~i~gGpPCQ~fS~~~~~~~~~~~d~r~~L~~~~~~~i~-~~~P~~~v~ENV 246 (620)
.+| ..+|+|+-=. +|-+ . -|.|..+.+...+ .++|.-+++=+-
T Consensus 254 --~lp--ekvDIIVSEl-------LGsf-----g--~nEl~pE~Lda~~rfLkp~Gi~IP~~ 297 (448)
T PF05185_consen 254 --ELP--EKVDIIVSEL-------LGSF-----G--DNELSPECLDAADRFLKPDGIMIPSS 297 (448)
T ss_dssp --CHS--S-EEEEEE----------BTT-----B--TTTSHHHHHHHGGGGEEEEEEEESSE
T ss_pred --CCC--CceeEEEEec-------cCCc-----c--ccccCHHHHHHHHhhcCCCCEEeCcc
Confidence 233 4799987321 1211 0 1335556555443 356666665443
No 164
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=80.81 E-value=20 Score=36.28 Aligned_cols=142 Identities=18% Similarity=0.211 Sum_probs=93.7
Q ss_pred CcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcC---------CCcccccchHHHHHHhhcccccccCc
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQ---------ECSVIQDDCNLVLKSLLKGHTQHKGV 187 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p---------~~~~~~~di~~~~~~~~~~~~~~~~~ 187 (620)
+-++|-|=.|.||...-+....-.+-+.+||+|+..++..+.-+| ...++.+|...++++.
T Consensus 77 p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~---------- 146 (246)
T PF01564_consen 77 PKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKET---------- 146 (246)
T ss_dssp T-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTS----------
T ss_pred cCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhc----------
Confidence 457888888888887777654322568899999999888776554 3456778887776531
Q ss_pred CCCCCCccceEEecCCCCccccccccchhhhcccccchHHHHHHHh-hhcCCcEEEEccccccccccchhHHHHHHHHHH
Q psy12304 188 SLPQKHEVDLIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLSFC-DLFQPKYIILENVTGLVHFNKNEILQCIFHCLL 266 (620)
Q Consensus 188 ~~p~~~~vD~i~gGpPCQ~fS~~~~~~~~~~~d~r~~L~~~~~~~i-~~~~P~~~v~ENV~gl~~~~~~~~~~~i~~~l~ 266 (620)
.. ...|+|+.-.+= +.+.+ .+-.-.+|++.+ +.++|.-+++=|...... ....++.+...|.
T Consensus 147 --~~-~~yDvIi~D~~d-p~~~~-----------~~l~t~ef~~~~~~~L~~~Gv~v~~~~~~~~--~~~~~~~i~~tl~ 209 (246)
T PF01564_consen 147 --QE-EKYDVIIVDLTD-PDGPA-----------PNLFTREFYQLCKRRLKPDGVLVLQAGSPFL--HPELFKSILKTLR 209 (246)
T ss_dssp --SS-T-EEEEEEESSS-TTSCG-----------GGGSSHHHHHHHHHHEEEEEEEEEEEEETTT--THHHHHHHHHHHH
T ss_pred --cC-CcccEEEEeCCC-CCCCc-----------ccccCHHHHHHHHhhcCCCcEEEEEccCccc--chHHHHHHHHHHH
Confidence 11 168999886551 11111 011123555554 567999999999855432 3467888999999
Q ss_pred cCCCEEEEEEEecCCCCCc
Q psy12304 267 KMNYQVTFDVLQSGNYGVA 285 (620)
Q Consensus 267 ~~GY~v~~~~l~A~~yGvP 285 (620)
+..-++......--.||..
T Consensus 210 ~~F~~v~~~~~~vP~~~~~ 228 (246)
T PF01564_consen 210 SVFPQVKPYTAYVPSYGSG 228 (246)
T ss_dssp TTSSEEEEEEEECTTSCSS
T ss_pred HhCCceEEEEEEcCeeccc
Confidence 9999998888887777754
No 165
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=80.18 E-value=3.2 Score=43.61 Aligned_cols=38 Identities=18% Similarity=0.131 Sum_probs=32.1
Q ss_pred cceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHH
Q psy12304 118 LKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASY 156 (620)
Q Consensus 118 l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty 156 (620)
-+++|+=||.|.+...+...|. ..+.++|.++.....+
T Consensus 123 ~~VLDvGCG~G~~~~~~~~~g~-~~v~GiDpS~~ml~q~ 160 (314)
T TIGR00452 123 RTILDVGCGSGYHMWRMLGHGA-KSLVGIDPTVLFLCQF 160 (314)
T ss_pred CEEEEeccCCcHHHHHHHHcCC-CEEEEEcCCHHHHHHH
Confidence 4899999999999999998887 6789999998765443
No 166
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=80.08 E-value=3.9 Score=33.56 Aligned_cols=68 Identities=15% Similarity=0.275 Sum_probs=45.4
Q ss_pred ecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcCCCc--ccccchHHHHHHhhcccccccCcCCCCCCccceE
Q psy12304 121 LDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQECS--VIQDDCNLVLKSLLKGHTQHKGVSLPQKHEVDLI 198 (620)
Q Consensus 121 ~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p~~~--~~~~di~~~~~~~~~~~~~~~~~~~p~~~~vD~i 198 (620)
||+=||.|-.+..|...+. .-++++|+++.+.+.-+.+..... +...|+.++ .+| .+.+|+|
T Consensus 1 LdiG~G~G~~~~~l~~~~~-~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l--------------~~~-~~sfD~v 64 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGG-ASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDL--------------PFP-DNSFDVV 64 (95)
T ss_dssp EEET-TTSHHHHHHHHTTT-CEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSS--------------SS--TT-EEEE
T ss_pred CEecCcCCHHHHHHHhccC-CEEEEEeCCHHHHHHHHhcccccCchheeehHHhC--------------ccc-ccccccc
Confidence 6888999999999999843 469999999999999988876543 333443221 222 3689999
Q ss_pred EecCCC
Q psy12304 199 VAGPPC 204 (620)
Q Consensus 199 ~gGpPC 204 (620)
+...=+
T Consensus 65 ~~~~~~ 70 (95)
T PF08241_consen 65 FSNSVL 70 (95)
T ss_dssp EEESHG
T ss_pred ccccce
Confidence 765433
No 167
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=80.01 E-value=2.8 Score=41.97 Aligned_cols=39 Identities=26% Similarity=0.348 Sum_probs=33.5
Q ss_pred CCcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHH
Q psy12304 116 TPLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAAS 155 (620)
Q Consensus 116 ~~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~t 155 (620)
..-+++|+-||.|+++.-+.+.|. ..++|+|+++.-...
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~ga-~~v~avD~~~~~l~~ 113 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQKGA-KEVYGVDVGYNQLAE 113 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHcCC-CEEEEEeCCHHHHHH
Confidence 345799999999999999999997 779999999965554
No 168
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=79.90 E-value=3.4 Score=41.88 Aligned_cols=70 Identities=19% Similarity=0.173 Sum_probs=51.1
Q ss_pred CcceecccccccHHHHHHHhc--CCCccEEEEcCchhHHHHHHHhcCCCcccccchHHHHHHhhcccccccCcCCCCCCc
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQA--GVAKPCWSVELERSEAASYDANFQECSVIQDDCNLVLKSLLKGHTQHKGVSLPQKHE 194 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~a--G~~~~~~a~e~d~~a~~ty~~N~p~~~~~~~di~~~~~~~~~~~~~~~~~~~p~~~~ 194 (620)
.-++||+-||.|.++.-+... |. .+.++|+++..++.-+.+ +..+..+|+.++ +..+.
T Consensus 30 ~~~vLDlGcG~G~~~~~l~~~~p~~--~v~gvD~s~~~~~~a~~~--~~~~~~~d~~~~----------------~~~~~ 89 (255)
T PRK14103 30 ARRVVDLGCGPGNLTRYLARRWPGA--VIEALDSSPEMVAAARER--GVDARTGDVRDW----------------KPKPD 89 (255)
T ss_pred CCEEEEEcCCCCHHHHHHHHHCCCC--EEEEEECCHHHHHHHHhc--CCcEEEcChhhC----------------CCCCC
Confidence 458999999999999888876 44 478999999998876654 344555665432 12357
Q ss_pred cceEEecCCCCc
Q psy12304 195 VDLIVAGPPCQG 206 (620)
Q Consensus 195 vD~i~gGpPCQ~ 206 (620)
+|+|+.....+-
T Consensus 90 fD~v~~~~~l~~ 101 (255)
T PRK14103 90 TDVVVSNAALQW 101 (255)
T ss_pred ceEEEEehhhhh
Confidence 999999776543
No 169
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=79.85 E-value=1.3 Score=44.70 Aligned_cols=41 Identities=17% Similarity=0.230 Sum_probs=29.7
Q ss_pred CCcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHH
Q psy12304 116 TPLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDA 158 (620)
Q Consensus 116 ~~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~ 158 (620)
..-+++|+|||+|+.++.+...+. .++++|+++.....+++
T Consensus 20 ~~~~~vepF~G~g~V~~~~~~~~~--~vi~ND~~~~l~~~~~~ 60 (260)
T PF02086_consen 20 KHKTYVEPFAGGGSVFLNLKQPGK--RVIINDINPDLINFWKA 60 (260)
T ss_dssp S-SEEEETT-TTSHHHHCC---SS--EEEEEES-HHHHHHHHH
T ss_pred CCCEEEEEecchhHHHHHhccccc--ceeeeechHHHHHHHHH
Confidence 345899999999999998876553 68899999999888873
No 170
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=79.50 E-value=3 Score=41.23 Aligned_cols=43 Identities=21% Similarity=0.232 Sum_probs=37.6
Q ss_pred CcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcC
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQ 161 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p 161 (620)
..++||+.||.|.++..|...|. . +.++|+++.+++.-+.++.
T Consensus 64 ~~~vLDvGcG~G~~~~~l~~~~~-~-v~~~D~s~~~i~~a~~~~~ 106 (230)
T PRK07580 64 GLRILDAGCGVGSLSIPLARRGA-K-VVASDISPQMVEEARERAP 106 (230)
T ss_pred CCEEEEEeCCCCHHHHHHHHcCC-E-EEEEECCHHHHHHHHHHHH
Confidence 46899999999999999998886 5 8999999999888877754
No 171
>PRK04457 spermidine synthase; Provisional
Probab=78.91 E-value=5.6 Score=40.65 Aligned_cols=104 Identities=17% Similarity=0.156 Sum_probs=65.9
Q ss_pred cceecccccccHHHHHHHhc-CCCccEEEEcCchhHHHHHHHhcC------CCcccccchHHHHHHhhcccccccCcCCC
Q psy12304 118 LKCLDLFSGCGGLMEGLCQA-GVAKPCWSVELERSEAASYDANFQ------ECSVIQDDCNLVLKSLLKGHTQHKGVSLP 190 (620)
Q Consensus 118 l~~~dLFsG~Gg~s~Gl~~a-G~~~~~~a~e~d~~a~~ty~~N~p------~~~~~~~di~~~~~~~~~~~~~~~~~~~p 190 (620)
-++++|=+|.|.++.-+... +- ..+.++|+|+..++.-+.++. ...++.+|..+++.. .
T Consensus 68 ~~vL~IG~G~G~l~~~l~~~~p~-~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~------------~- 133 (262)
T PRK04457 68 QHILQIGLGGGSLAKFIYTYLPD-TRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAV------------H- 133 (262)
T ss_pred CEEEEECCCHhHHHHHHHHhCCC-CeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHh------------C-
Confidence 36999999999988877653 22 248899999999999888763 234566787766432 1
Q ss_pred CCCccceEEecCCCCccccccccchhhhcccccchHHHHHHH-hhhcCCcEEEEccccc
Q psy12304 191 QKHEVDLIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLSF-CDLFQPKYIILENVTG 248 (620)
Q Consensus 191 ~~~~vD~i~gGpPCQ~fS~~~~~~~~~~~d~r~~L~~~~~~~-i~~~~P~~~v~ENV~g 248 (620)
.+.+|+|+... |+..+. ...-...++++. -+.++|.-+++=|+.+
T Consensus 134 -~~~yD~I~~D~----~~~~~~--------~~~l~t~efl~~~~~~L~pgGvlvin~~~ 179 (262)
T PRK04457 134 -RHSTDVILVDG----FDGEGI--------IDALCTQPFFDDCRNALSSDGIFVVNLWS 179 (262)
T ss_pred -CCCCCEEEEeC----CCCCCC--------ccccCcHHHHHHHHHhcCCCcEEEEEcCC
Confidence 13689988642 221111 000011344443 3457999988888764
No 172
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=78.91 E-value=4.1 Score=40.15 Aligned_cols=44 Identities=16% Similarity=0.163 Sum_probs=34.5
Q ss_pred CcceecccccccHHHHHHHhc-CCCccEEEEcCchhHHHHHHHhc
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQA-GVAKPCWSVELERSEAASYDANF 160 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~a-G~~~~~~a~e~d~~a~~ty~~N~ 160 (620)
.-+++|+.||.|.++.-+... |-...++++|+++...+.-+.|.
T Consensus 77 g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l 121 (212)
T PRK13942 77 GMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTL 121 (212)
T ss_pred cCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHH
Confidence 347999999999999777653 32125899999999988877775
No 173
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=78.29 E-value=5.6 Score=38.50 Aligned_cols=67 Identities=30% Similarity=0.393 Sum_probs=50.4
Q ss_pred cceecccccccHHHHHHHh-cCCCccEEEEcCchhHHHHHHHhcCCCcccccchHHHHHHhhcccccccCcCCCCCCccc
Q psy12304 118 LKCLDLFSGCGGLMEGLCQ-AGVAKPCWSVELERSEAASYDANFQECSVIQDDCNLVLKSLLKGHTQHKGVSLPQKHEVD 196 (620)
Q Consensus 118 l~~~dLFsG~Gg~s~Gl~~-aG~~~~~~a~e~d~~a~~ty~~N~p~~~~~~~di~~~~~~~~~~~~~~~~~~~p~~~~vD 196 (620)
-+||||=||-|-+-.-|.. -+. ...++|+|++.+..-.++ +..++.+|+++-+. .+| .+.+|
T Consensus 15 srVLDLGCGdG~LL~~L~~~k~v--~g~GvEid~~~v~~cv~r--Gv~Viq~Dld~gL~------------~f~-d~sFD 77 (193)
T PF07021_consen 15 SRVLDLGCGDGELLAYLKDEKQV--DGYGVEIDPDNVAACVAR--GVSVIQGDLDEGLA------------DFP-DQSFD 77 (193)
T ss_pred CEEEecCCCchHHHHHHHHhcCC--eEEEEecCHHHHHHHHHc--CCCEEECCHHHhHh------------hCC-CCCcc
Confidence 5799999999998877776 454 589999999987776666 56788899876532 233 34789
Q ss_pred eEEec
Q psy12304 197 LIVAG 201 (620)
Q Consensus 197 ~i~gG 201 (620)
.++.+
T Consensus 78 ~VIls 82 (193)
T PF07021_consen 78 YVILS 82 (193)
T ss_pred EEehH
Confidence 88865
No 174
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=78.22 E-value=5.9 Score=41.24 Aligned_cols=58 Identities=9% Similarity=0.080 Sum_probs=44.9
Q ss_pred cceecccccccHHHHHHHhcCC-CccEEEEcCchhHHHHHHHhcC---CCcccccchHHHHH
Q psy12304 118 LKCLDLFSGCGGLMEGLCQAGV-AKPCWSVELERSEAASYDANFQ---ECSVIQDDCNLVLK 175 (620)
Q Consensus 118 l~~~dLFsG~Gg~s~Gl~~aG~-~~~~~a~e~d~~a~~ty~~N~p---~~~~~~~di~~~~~ 175 (620)
-.++|.-||.||.+..+...+- .-.+.|+|.|+.|++.-+.+.. ...++.+|..++..
T Consensus 21 ~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~l~~ 82 (296)
T PRK00050 21 GIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSNLKE 82 (296)
T ss_pred CEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHHHHH
Confidence 4799999999999999988641 1259999999999998877653 34566777777643
No 175
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=78.11 E-value=3.6 Score=42.22 Aligned_cols=54 Identities=11% Similarity=0.141 Sum_probs=41.7
Q ss_pred CcceecccccccHHHHHHHhcCC---CccEEEEcCchhHHHHHHHhcCCCcccccch
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQAGV---AKPCWSVELERSEAASYDANFQECSVIQDDC 170 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~aG~---~~~~~a~e~d~~a~~ty~~N~p~~~~~~~di 170 (620)
..++||+-||.|.++..+....- ...+.++|+++.+++.-+.+.++.....+|+
T Consensus 86 ~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~ 142 (272)
T PRK11088 86 ATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASS 142 (272)
T ss_pred CCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeec
Confidence 35799999999999988875421 0247999999999998888888766555554
No 176
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=76.95 E-value=3 Score=40.09 Aligned_cols=48 Identities=19% Similarity=0.184 Sum_probs=34.3
Q ss_pred cceecccccccHHHHHHHhcCC-CccEEEEcCchhHHHHHHHhcCCCcccccchH
Q psy12304 118 LKCLDLFSGCGGLMEGLCQAGV-AKPCWSVELERSEAASYDANFQECSVIQDDCN 171 (620)
Q Consensus 118 l~~~dLFsG~Gg~s~Gl~~aG~-~~~~~a~e~d~~a~~ty~~N~p~~~~~~~di~ 171 (620)
-++||+-||.|+++.-+..... ...++++|+++.. ..++..+++.|+.
T Consensus 34 ~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~------~~~~i~~~~~d~~ 82 (188)
T TIGR00438 34 DTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK------PIENVDFIRGDFT 82 (188)
T ss_pred CEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc------cCCCceEEEeeCC
Confidence 4799999999999987766432 1358999999854 3445555566654
No 177
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=76.92 E-value=9.9 Score=44.65 Aligned_cols=80 Identities=11% Similarity=0.098 Sum_probs=45.4
Q ss_pred EEEEcCchhHHHHHHHhcCCC------cccccchHHHHHHhhcccccccCcCCCC-CCccceEEecCCCCccccccccch
Q psy12304 143 CWSVELERSEAASYDANFQEC------SVIQDDCNLVLKSLLKGHTQHKGVSLPQ-KHEVDLIVAGPPCQGFSQLNRARE 215 (620)
Q Consensus 143 ~~a~e~d~~a~~ty~~N~p~~------~~~~~di~~~~~~~~~~~~~~~~~~~p~-~~~vD~i~gGpPCQ~fS~~~~~~~ 215 (620)
++++|+|+.|++.-+.|.-.. .+.++|+.++ ..+. .+.+|+|+.-||= |..
T Consensus 259 i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~--------------~~~~~~~~~d~IvtNPPY------g~r-- 316 (702)
T PRK11783 259 FYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADL--------------KNPLPKGPTGLVISNPPY------GER-- 316 (702)
T ss_pred EEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhc--------------ccccccCCCCEEEECCCC------cCc--
Confidence 789999999999999985422 2334454432 0111 2458999999992 211
Q ss_pred hhhcccccchHHHHHHHhhhcC--CcEEEEc
Q psy12304 216 LEKSKLKNGLVFTFLSFCDLFQ--PKYIILE 244 (620)
Q Consensus 216 ~~~~d~r~~L~~~~~~~i~~~~--P~~~v~E 244 (620)
.+.+.....|+..+.+.++... ++.+++=
T Consensus 317 ~~~~~~l~~lY~~lg~~lk~~~~g~~~~llt 347 (702)
T PRK11783 317 LGEEPALIALYSQLGRRLKQQFGGWNAALFS 347 (702)
T ss_pred cCchHHHHHHHHHHHHHHHHhCCCCeEEEEe
Confidence 1111122346666666666533 4454443
No 178
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=76.85 E-value=2.8 Score=46.72 Aligned_cols=152 Identities=11% Similarity=0.076 Sum_probs=84.7
Q ss_pred cceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhc---CCCcccccchHHHHHHhhcccccccCcCCCCCCc
Q psy12304 118 LKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANF---QECSVIQDDCNLVLKSLLKGHTQHKGVSLPQKHE 194 (620)
Q Consensus 118 l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~---p~~~~~~~di~~~~~~~~~~~~~~~~~~~p~~~~ 194 (620)
-+++|+.||.|.++..|...+. -+.++|+++.+++.-+... ++..++++|+.+. ...+| .+.
T Consensus 39 ~~vLDlGcG~G~~~~~la~~~~--~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~------------~~~~~-~~~ 103 (475)
T PLN02336 39 KSVLELGAGIGRFTGELAKKAG--QVIALDFIESVIKKNESINGHYKNVKFMCADVTSP------------DLNIS-DGS 103 (475)
T ss_pred CEEEEeCCCcCHHHHHHHhhCC--EEEEEeCCHHHHHHHHHHhccCCceEEEEeccccc------------ccCCC-CCC
Confidence 4799999999999999998764 4789999999987543322 2333444454211 01122 357
Q ss_pred cceEEecCCCCccccccccchhhhcccccchHHHHHHHhhhcCCc--EEEEccccccc-------cccchhHHHHHHHHH
Q psy12304 195 VDLIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLSFCDLFQPK--YIILENVTGLV-------HFNKNEILQCIFHCL 265 (620)
Q Consensus 195 vD~i~gGpPCQ~fS~~~~~~~~~~~d~r~~L~~~~~~~i~~~~P~--~~v~ENV~gl~-------~~~~~~~~~~i~~~l 265 (620)
+|+|+...++.-++.. ....++.++. +.++|. +++.||+..-- ....-.....+.+.+
T Consensus 104 fD~I~~~~~l~~l~~~----------~~~~~l~~~~---r~Lk~gG~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f 170 (475)
T PLN02336 104 VDLIFSNWLLMYLSDK----------EVENLAERMV---KWLKVGGYIFFRESCFHQSGDSKRKNNPTHYREPRFYTKVF 170 (475)
T ss_pred EEEEehhhhHHhCCHH----------HHHHHHHHHH---HhcCCCeEEEEEeccCCCCCcccccCCCCeecChHHHHHHH
Confidence 9999988775433210 1122333333 445675 44557663211 000101234444555
Q ss_pred HcCCCEE------EEEEEec---CCCCCcccccEEEEEEec
Q psy12304 266 LKMNYQV------TFDVLQS---GNYGVAQSRNRVVILASK 297 (620)
Q Consensus 266 ~~~GY~v------~~~~l~A---~~yGvPQ~R~R~fivg~~ 297 (620)
.+.|.+. ....+.+ ..|..|.+-.|+++-..+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (475)
T PLN02336 171 KECHTRDEDGNSFELSLVGCKCIGAYVKNKKNQNQICWLWQ 211 (475)
T ss_pred HHheeccCCCCEEEEEEEEeechhhhhhccCCcceEEEEEE
Confidence 5544432 2222221 357888888888876654
No 179
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=76.79 E-value=2.5 Score=42.43 Aligned_cols=101 Identities=15% Similarity=0.257 Sum_probs=56.0
Q ss_pred CcceecccccccHHHHHHHh-cCCCccEEEEcCchhHHHHHHHhcC-----CCcccccchHHHHHHhhcccccccCcCCC
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQ-AGVAKPCWSVELERSEAASYDANFQ-----ECSVIQDDCNLVLKSLLKGHTQHKGVSLP 190 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~-aG~~~~~~a~e~d~~a~~ty~~N~p-----~~~~~~~di~~~~~~~~~~~~~~~~~~~p 190 (620)
..++||+.||.|-++.-+.. .|-.-.+.++|+++.-++.-+.... +.....+|..++ .+|
T Consensus 48 g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~l--------------p~~ 113 (233)
T PF01209_consen 48 GDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDL--------------PFP 113 (233)
T ss_dssp --EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB----------------S-
T ss_pred CCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHh--------------cCC
Confidence 45899999999999988865 3432258899999998877766532 333444554322 122
Q ss_pred CCCccceEEecCCCCccccccccchhhhcccccchHHHHHHHhhhcCC--cEEEEcccc
Q psy12304 191 QKHEVDLIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLSFCDLFQP--KYIILENVT 247 (620)
Q Consensus 191 ~~~~vD~i~gGpPCQ~fS~~~~~~~~~~~d~r~~L~~~~~~~i~~~~P--~~~v~ENV~ 247 (620)
.+.+|+++.++= . +...| +...+.+ +.+.+|| +++++|-..
T Consensus 114 -d~sfD~v~~~fg-----l------rn~~d-~~~~l~E---~~RVLkPGG~l~ile~~~ 156 (233)
T PF01209_consen 114 -DNSFDAVTCSFG-----L------RNFPD-RERALRE---MYRVLKPGGRLVILEFSK 156 (233)
T ss_dssp -TT-EEEEEEES------G------GG-SS-HHHHHHH---HHHHEEEEEEEEEEEEEB
T ss_pred -CCceeEEEHHhh-----H------HhhCC-HHHHHHH---HHHHcCCCeEEEEeeccC
Confidence 257999987761 1 11122 1223444 4455788 677777543
No 180
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=76.71 E-value=4.6 Score=41.24 Aligned_cols=45 Identities=20% Similarity=0.181 Sum_probs=35.7
Q ss_pred CCcceecccccccHHHHHHHh-cCCCccEEEEcCchhHHHHHHHhcCC
Q psy12304 116 TPLKCLDLFSGCGGLMEGLCQ-AGVAKPCWSVELERSEAASYDANFQE 162 (620)
Q Consensus 116 ~~l~~~dLFsG~Gg~s~Gl~~-aG~~~~~~a~e~d~~a~~ty~~N~p~ 162 (620)
...++||+-||.|+.+.-+.. .|. .+.++|+++.+++.-+.+.+.
T Consensus 52 ~~~~VLDiGcG~G~~a~~la~~~~~--~v~giD~s~~~~~~a~~~~~~ 97 (263)
T PTZ00098 52 ENSKVLDIGSGLGGGCKYINEKYGA--HVHGVDICEKMVNIAKLRNSD 97 (263)
T ss_pred CCCEEEEEcCCCChhhHHHHhhcCC--EEEEEECCHHHHHHHHHHcCc
Confidence 346899999999998887754 354 488999999998888777643
No 181
>KOG1271|consensus
Probab=75.75 E-value=7.9 Score=37.14 Aligned_cols=41 Identities=24% Similarity=0.327 Sum_probs=35.6
Q ss_pred ceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhc
Q psy12304 119 KCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANF 160 (620)
Q Consensus 119 ~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~ 160 (620)
+||||=||-|-+-.+|.+.||.....++|.++.|++. ..|.
T Consensus 70 ~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~L-A~ni 110 (227)
T KOG1271|consen 70 RVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVEL-AQNI 110 (227)
T ss_pred ceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHH-HHHH
Confidence 8999999999999999999994348899999999887 5554
No 182
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=74.95 E-value=8 Score=41.81 Aligned_cols=76 Identities=17% Similarity=0.204 Sum_probs=53.8
Q ss_pred CcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHh-----cCCCcccccchHHHHHHhhcccccccCcCCCC
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDAN-----FQECSVIQDDCNLVLKSLLKGHTQHKGVSLPQ 191 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N-----~p~~~~~~~di~~~~~~~~~~~~~~~~~~~p~ 191 (620)
.-.+||+-||.|.+.+.+....=...+.|+|+++.++..-..+ ..+..++++|+..++. .+|
T Consensus 123 ~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~------------~~~- 189 (390)
T PRK14121 123 EKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLE------------LLP- 189 (390)
T ss_pred CCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhh------------hCC-
Confidence 3479999999999998888753213688999998876555433 3455667778766532 122
Q ss_pred CCccceEEecCCCC
Q psy12304 192 KHEVDLIVAGPPCQ 205 (620)
Q Consensus 192 ~~~vD~i~gGpPCQ 205 (620)
.+.+|.|+.-+|+.
T Consensus 190 ~~s~D~I~lnFPdP 203 (390)
T PRK14121 190 SNSVEKIFVHFPVP 203 (390)
T ss_pred CCceeEEEEeCCCC
Confidence 46799999988875
No 183
>PRK08317 hypothetical protein; Provisional
Probab=73.81 E-value=7.3 Score=38.28 Aligned_cols=43 Identities=14% Similarity=0.041 Sum_probs=33.8
Q ss_pred CcceecccccccHHHHHHHhcC-CCccEEEEcCchhHHHHHHHh
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQAG-VAKPCWSVELERSEAASYDAN 159 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~aG-~~~~~~a~e~d~~a~~ty~~N 159 (620)
..+++|+.||.|.++..+.... -...+.++|+++...+.-+.+
T Consensus 20 ~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~ 63 (241)
T PRK08317 20 GDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKER 63 (241)
T ss_pred CCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHH
Confidence 4589999999999998887643 113588999999887776665
No 184
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=73.44 E-value=4.8 Score=39.32 Aligned_cols=37 Identities=19% Similarity=0.232 Sum_probs=30.5
Q ss_pred cceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHH
Q psy12304 118 LKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASY 156 (620)
Q Consensus 118 l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty 156 (620)
=.|||.|||.|.-..+..+.|- + -.++|+++..++.-
T Consensus 193 diVlDpF~GSGTT~~aa~~l~R-~-~ig~E~~~~y~~~a 229 (231)
T PF01555_consen 193 DIVLDPFAGSGTTAVAAEELGR-R-YIGIEIDEEYCEIA 229 (231)
T ss_dssp -EEEETT-TTTHHHHHHHHTT--E-EEEEESSHHHHHHH
T ss_pred eeeehhhhccChHHHHHHHcCC-e-EEEEeCCHHHHHHh
Confidence 3699999999999999999996 4 77999999988764
No 185
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=73.20 E-value=7.7 Score=40.20 Aligned_cols=70 Identities=26% Similarity=0.256 Sum_probs=48.6
Q ss_pred CcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhc----CCC-cccccchHHHHHHhhcccccccCcCCCC
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANF----QEC-SVIQDDCNLVLKSLLKGHTQHKGVSLPQ 191 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~----p~~-~~~~~di~~~~~~~~~~~~~~~~~~~p~ 191 (620)
.-+++||-||.|-+++-+....=..-+.-+|+|..|++.-+.|. ++. .++..|+. ..+
T Consensus 159 ~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~---------------~~v-- 221 (300)
T COG2813 159 GGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLY---------------EPV-- 221 (300)
T ss_pred CCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEeccc---------------ccc--
Confidence 33899999999999988877542134677999999888776664 332 34433331 122
Q ss_pred CCccceEEecCC
Q psy12304 192 KHEVDLIVAGPP 203 (620)
Q Consensus 192 ~~~vD~i~gGpP 203 (620)
.+++|+|+.-||
T Consensus 222 ~~kfd~IisNPP 233 (300)
T COG2813 222 EGKFDLIISNPP 233 (300)
T ss_pred cccccEEEeCCC
Confidence 237999999999
No 186
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=72.78 E-value=6.6 Score=38.08 Aligned_cols=41 Identities=29% Similarity=0.164 Sum_probs=35.7
Q ss_pred CcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHh
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDAN 159 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N 159 (620)
..++||+=||.|-++.-+.+.|+ .+.|+|+++.+++..+.+
T Consensus 31 ~~~vLDiGcG~G~~a~~la~~g~--~V~~iD~s~~~l~~a~~~ 71 (195)
T TIGR00477 31 PCKTLDLGCGQGRNSLYLSLAGY--DVRAWDHNPASIASVLDM 71 (195)
T ss_pred CCcEEEeCCCCCHHHHHHHHCCC--eEEEEECCHHHHHHHHHH
Confidence 45899999999999999988887 489999999999877654
No 187
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=72.30 E-value=7.7 Score=40.94 Aligned_cols=43 Identities=19% Similarity=0.107 Sum_probs=32.0
Q ss_pred CcceecccccccHHHHHHHhcCC-CccEEEEcCchhHHHHHHHh
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQAGV-AKPCWSVELERSEAASYDAN 159 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~aG~-~~~~~a~e~d~~a~~ty~~N 159 (620)
.-+++|+.||.|.++.-+....- ...+.++|+++..++.-+.|
T Consensus 81 g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~ 124 (322)
T PRK13943 81 GMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRN 124 (322)
T ss_pred CCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHH
Confidence 35799999999999988776421 11478999999877665554
No 188
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=70.90 E-value=6.8 Score=38.10 Aligned_cols=41 Identities=24% Similarity=0.238 Sum_probs=33.8
Q ss_pred CCcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHH
Q psy12304 116 TPLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDA 158 (620)
Q Consensus 116 ~~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~ 158 (620)
++-++|||=||-|-=++=|.+.|+ + |.|+|+++.|++....
T Consensus 30 ~~g~~LDlgcG~GRNalyLA~~G~-~-VtAvD~s~~al~~l~~ 70 (192)
T PF03848_consen 30 KPGKALDLGCGEGRNALYLASQGF-D-VTAVDISPVALEKLQR 70 (192)
T ss_dssp -SSEEEEES-TTSHHHHHHHHTT--E-EEEEESSHHHHHHHHH
T ss_pred CCCcEEEcCCCCcHHHHHHHHCCC-e-EEEEECCHHHHHHHHH
Confidence 456899999999999999999999 4 8899999999877543
No 189
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=70.74 E-value=11 Score=40.20 Aligned_cols=55 Identities=22% Similarity=0.303 Sum_probs=39.2
Q ss_pred CCcceecccccccHHHHHHHhc-CCCccEEEEcCchhHHHHHHHhcC--CCcccccchH
Q psy12304 116 TPLKCLDLFSGCGGLMEGLCQA-GVAKPCWSVELERSEAASYDANFQ--ECSVIQDDCN 171 (620)
Q Consensus 116 ~~l~~~dLFsG~Gg~s~Gl~~a-G~~~~~~a~e~d~~a~~ty~~N~p--~~~~~~~di~ 171 (620)
...++||+-||.|.+++.+... +- ..+.++|+++...+.-+.+.+ +..++.+|+.
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~-~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e 170 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDA-KNVTILDQSPHQLAKAKQKEPLKECKIIEGDAE 170 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHhhhccCCeEEeccHH
Confidence 3568999999999998888653 32 358899999998887777643 3334444543
No 190
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=70.23 E-value=7.8 Score=38.14 Aligned_cols=43 Identities=14% Similarity=0.139 Sum_probs=33.0
Q ss_pred ceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcC
Q psy12304 119 KCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQ 161 (620)
Q Consensus 119 ~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p 161 (620)
++||+-||.|+++.-+.+.+-...+.++|+++...+.-+.++.
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~ 44 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIR 44 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH
Confidence 5899999999998877664311247799999988887777754
No 191
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=69.99 E-value=10 Score=40.30 Aligned_cols=58 Identities=22% Similarity=0.282 Sum_probs=43.1
Q ss_pred CcceecccccccHHH--HHHHhcCCCccEEEEcCchhHHHHHHHhcC-----CCcccccchHHHHHH
Q psy12304 117 PLKCLDLFSGCGGLM--EGLCQAGVAKPCWSVELERSEAASYDANFQ-----ECSVIQDDCNLVLKS 176 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s--~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p-----~~~~~~~di~~~~~~ 176 (620)
..+++|-|||.|-=+ ...| +|. .-++++|+++.|+++-+.|.- +..+++.|.+.++.+
T Consensus 53 ~~~v~DalsatGiRgIRya~E-~~~-~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~~ 117 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVE-TGV-VKVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLHE 117 (380)
T ss_pred CeEEeecccccchhHhhhhhh-cCc-cEEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHHHh
Confidence 678999999999533 3333 454 369999999999999988842 345677888887653
No 192
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=69.36 E-value=7.7 Score=35.51 Aligned_cols=38 Identities=18% Similarity=0.354 Sum_probs=34.3
Q ss_pred CCcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHH
Q psy12304 116 TPLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAAS 155 (620)
Q Consensus 116 ~~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~t 155 (620)
...++||+-||.|.+...+...|+ + +.++|+++.+++.
T Consensus 22 ~~~~vLDiGcG~G~~~~~l~~~~~-~-~~g~D~~~~~~~~ 59 (161)
T PF13489_consen 22 PGKRVLDIGCGTGSFLRALAKRGF-E-VTGVDISPQMIEK 59 (161)
T ss_dssp TTSEEEEESSTTSHHHHHHHHTTS-E-EEEEESSHHHHHH
T ss_pred CCCEEEEEcCCCCHHHHHHHHhCC-E-EEEEECCHHHHhh
Confidence 456899999999999999999998 4 7899999999888
No 193
>KOG1500|consensus
Probab=68.47 E-value=9 Score=40.02 Aligned_cols=109 Identities=21% Similarity=0.336 Sum_probs=68.1
Q ss_pred CCcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcCCCcccccchHHHHHHhhcccccccCcCCCCCCcc
Q psy12304 116 TPLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQECSVIQDDCNLVLKSLLKGHTQHKGVSLPQKHEV 195 (620)
Q Consensus 116 ~~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p~~~~~~~di~~~~~~~~~~~~~~~~~~~p~~~~v 195 (620)
..-.|+|.=||.|-+|.=..+||. +-++|+|-++-|...-+.--.+ .+.+-|. ++.|.+.+ .++| .++
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAGA-~~vYAvEAS~MAqyA~~Lv~~N--~~~~rIt-----VI~GKiEd--ieLP--Ek~ 244 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAGA-KKVYAVEASEMAQYARKLVASN--NLADRIT-----VIPGKIED--IELP--EKV 244 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhCc-ceEEEEehhHHHHHHHHHHhcC--CccceEE-----EccCcccc--ccCc--hhc
Confidence 334689999999999999999998 7899999887765443322111 1111111 12332211 1344 689
Q ss_pred ceEEecCCCCccccccccchhhhcccccchHHHHHHHhhhcCCcEEEEcccccc
Q psy12304 196 DLIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLSFCDLFQPKYIILENVTGL 249 (620)
Q Consensus 196 D~i~gGpPCQ~fS~~~~~~~~~~~d~r~~L~~~~~~~i~~~~P~~~v~ENV~gl 249 (620)
|+|+--|= |+=. .+.+++..|+..=+.++|+--++--|-.+
T Consensus 245 DviISEPM--G~mL-----------~NERMLEsYl~Ark~l~P~GkMfPT~gdi 285 (517)
T KOG1500|consen 245 DVIISEPM--GYML-----------VNERMLESYLHARKWLKPNGKMFPTVGDI 285 (517)
T ss_pred cEEEeccc--hhhh-----------hhHHHHHHHHHHHhhcCCCCcccCcccce
Confidence 99986552 2222 22346777877778889988777777654
No 194
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=68.02 E-value=5.1 Score=38.51 Aligned_cols=40 Identities=23% Similarity=0.205 Sum_probs=33.7
Q ss_pred ceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhc
Q psy12304 119 KCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANF 160 (620)
Q Consensus 119 ~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~ 160 (620)
++.||=+|.|-+|.=...+ . +-+.|+|.|+.-......|.
T Consensus 35 ~~~DLGaGsGiLs~~Aa~~-A-~rViAiE~dPk~a~~a~eN~ 74 (252)
T COG4076 35 TFADLGAGSGILSVVAAHA-A-ERVIAIEKDPKRARLAEENL 74 (252)
T ss_pred ceeeccCCcchHHHHHHhh-h-ceEEEEecCcHHHHHhhhcC
Confidence 5799999999999766665 3 56999999999999888884
No 195
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=67.28 E-value=7.1 Score=38.40 Aligned_cols=46 Identities=17% Similarity=0.297 Sum_probs=36.4
Q ss_pred CCCcceecccccccHHH--HHHHhcCCCccEEEEcCchhHHHHHHHhc
Q psy12304 115 DTPLKCLDLFSGCGGLM--EGLCQAGVAKPCWSVELERSEAASYDANF 160 (620)
Q Consensus 115 ~~~l~~~dLFsG~Gg~s--~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~ 160 (620)
..++++-|=|||.|.|- +||....-..-++|.|+|+.|.+.-++|.
T Consensus 50 ~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL 97 (246)
T PF11599_consen 50 KGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNL 97 (246)
T ss_dssp -S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHH
T ss_pred CCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhh
Confidence 57899999999999975 78877655567999999999999999996
No 196
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=66.80 E-value=11 Score=39.23 Aligned_cols=55 Identities=16% Similarity=0.131 Sum_probs=39.7
Q ss_pred cceecccccccHHHHHHHhcCC-CccEEEEcCchhHHHHHHH----hcCCCcc--cccchHH
Q psy12304 118 LKCLDLFSGCGGLMEGLCQAGV-AKPCWSVELERSEAASYDA----NFQECSV--IQDDCNL 172 (620)
Q Consensus 118 l~~~dLFsG~Gg~s~Gl~~aG~-~~~~~a~e~d~~a~~ty~~----N~p~~~~--~~~di~~ 172 (620)
.++|||=||.|-.+.-|..++. ...+.++|+++...+.-+. .+|+..+ +++|+.+
T Consensus 65 ~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~ 126 (301)
T TIGR03438 65 CELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQ 126 (301)
T ss_pred CeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccc
Confidence 4799999999999999988742 1258999999987655444 4565443 4677654
No 197
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=66.32 E-value=5.3 Score=38.04 Aligned_cols=111 Identities=24% Similarity=0.361 Sum_probs=61.6
Q ss_pred CCcceecccccccHHHHHHHhcC-CCccEEEEcCchhHHHHHHHhcCCCcccccchHHH--HHHhhcccccccCcCCC-C
Q psy12304 116 TPLKCLDLFSGCGGLMEGLCQAG-VAKPCWSVELERSEAASYDANFQECSVIQDDCNLV--LKSLLKGHTQHKGVSLP-Q 191 (620)
Q Consensus 116 ~~l~~~dLFsG~Gg~s~Gl~~aG-~~~~~~a~e~d~~a~~ty~~N~p~~~~~~~di~~~--~~~~~~~~~~~~~~~~p-~ 191 (620)
...+++||.|+.||++.-+.+.+ -...++|+|+.+. ...++...+.+|+.+. ...+ . ..++ .
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~------~~~~~~~~i~~d~~~~~~~~~i-~-------~~~~~~ 88 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM------DPLQNVSFIQGDITNPENIKDI-R-------KLLPES 88 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST------GS-TTEEBTTGGGEEEEHSHHG-G-------GSHGTT
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccc------ccccceeeeecccchhhHHHhh-h-------hhcccc
Confidence 46899999999999999998887 1246999999887 2334555666776321 0111 0 0111 1
Q ss_pred CCccceEEe--cCCCCccccccccchhhhcccccchHHHHHHH-hhhcCCcE-EEEcccc
Q psy12304 192 KHEVDLIVA--GPPCQGFSQLNRARELEKSKLKNGLVFTFLSF-CDLFQPKY-IILENVT 247 (620)
Q Consensus 192 ~~~vD~i~g--GpPCQ~fS~~~~~~~~~~~d~r~~L~~~~~~~-i~~~~P~~-~v~ENV~ 247 (620)
.+.+|+|+. +|+|++....-. .....|....+.+ ++.++|.- ||+--..
T Consensus 89 ~~~~dlv~~D~~~~~~g~~~~d~-------~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~ 141 (181)
T PF01728_consen 89 GEKFDLVLSDMAPNVSGDRNIDE-------FISIRLILSQLLLALELLKPGGTFVIKVFK 141 (181)
T ss_dssp TCSESEEEE-------SSHHSSH-------HHHHHHHHHHHHHHHHHHCTTEEEEEEESS
T ss_pred ccCcceeccccccCCCCchhhHH-------HHHHHHHHHHHHHHHhhhcCCCEEEEEecc
Confidence 247898874 567777643221 1112344444444 46678887 6654444
No 198
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=65.52 E-value=16 Score=36.48 Aligned_cols=42 Identities=10% Similarity=0.044 Sum_probs=33.7
Q ss_pred CcceecccccccHHHHHHHhc----CCCccEEEEcCchhHHHHHHHhc
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQA----GVAKPCWSVELERSEAASYDANF 160 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~a----G~~~~~~a~e~d~~a~~ty~~N~ 160 (620)
..++||+=||.|.++..+.+. +. -+.++|+++.+++.-+.+.
T Consensus 54 ~~~iLDlGcG~G~~~~~l~~~~~~p~~--~v~gvD~s~~ml~~a~~~~ 99 (239)
T TIGR00740 54 DSNVYDLGCSRGAATLSARRNINQPNV--KIIGIDNSQPMVERCRQHI 99 (239)
T ss_pred CCEEEEecCCCCHHHHHHHHhcCCCCC--eEEEEeCCHHHHHHHHHHH
Confidence 347999999999999888763 33 4889999999988777664
No 199
>KOG1270|consensus
Probab=65.37 E-value=6.1 Score=40.03 Aligned_cols=40 Identities=23% Similarity=0.278 Sum_probs=36.9
Q ss_pred cceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHh
Q psy12304 118 LKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDAN 159 (620)
Q Consensus 118 l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N 159 (620)
++++|+=||.|-+|.-|...|. .+.++|..++++++++..
T Consensus 91 ~~ilDvGCGgGLLSepLArlga--~V~GID~s~~~V~vA~~h 130 (282)
T KOG1270|consen 91 MKILDVGCGGGLLSEPLARLGA--QVTGIDASDDMVEVANEH 130 (282)
T ss_pred ceEEEeccCccccchhhHhhCC--eeEeecccHHHHHHHHHh
Confidence 5699999999999999999997 588999999999999876
No 200
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=65.30 E-value=9.8 Score=34.39 Aligned_cols=42 Identities=12% Similarity=0.069 Sum_probs=36.5
Q ss_pred ceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhc
Q psy12304 119 KCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANF 160 (620)
Q Consensus 119 ~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~ 160 (620)
+++|+-||.|-+++.+...|....++++|.++.+.+.++.|+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~ 42 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENV 42 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHH
Confidence 479999999999999998876226999999999999988885
No 201
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=63.30 E-value=16 Score=37.28 Aligned_cols=44 Identities=25% Similarity=0.080 Sum_probs=32.1
Q ss_pred CcceecccccccHHHHHHHh-cCCCccEEEEcCchhHHHHHHHhc
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQ-AGVAKPCWSVELERSEAASYDANF 160 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~-aG~~~~~~a~e~d~~a~~ty~~N~ 160 (620)
.-++||+-||.|.+..-+.. .|....+.++|+++..++.-+.|.
T Consensus 78 g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~ 122 (272)
T PRK11873 78 GETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANA 122 (272)
T ss_pred CCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHH
Confidence 45899999999876654433 354224889999999988877764
No 202
>PLN02476 O-methyltransferase
Probab=63.02 E-value=24 Score=36.41 Aligned_cols=103 Identities=13% Similarity=0.158 Sum_probs=66.9
Q ss_pred CcceecccccccHHHHHHHhc-CCCccEEEEcCchhHHHHHHHhcCC------CcccccchHHHHHHhhcccccccCcCC
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQA-GVAKPCWSVELERSEAASYDANFQE------CSVIQDDCNLVLKSLLKGHTQHKGVSL 189 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~a-G~~~~~~a~e~d~~a~~ty~~N~p~------~~~~~~di~~~~~~~~~~~~~~~~~~~ 189 (620)
.-++||+.+|+|..++-+..+ +-.-.+.++|.++.+.+.-+.|+-. ..++.+|..+++..+... +
T Consensus 119 ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~-----~--- 190 (278)
T PLN02476 119 AERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQN-----G--- 190 (278)
T ss_pred CCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhc-----c---
Confidence 447999999999999887763 1111388999999998888888733 345567877776553210 0
Q ss_pred CCCCccceEEecCCCCccccccccchhhhcccccchHHHHHH-HhhhcCCcE-EEEcccc
Q psy12304 190 PQKHEVDLIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLS-FCDLFQPKY-IILENVT 247 (620)
Q Consensus 190 p~~~~vD~i~gGpPCQ~fS~~~~~~~~~~~d~r~~L~~~~~~-~i~~~~P~~-~v~ENV~ 247 (620)
..+.+|+|+...+ +. .+..|++ +++.++|.- +++.||-
T Consensus 191 -~~~~FD~VFIDa~-----------K~--------~Y~~y~e~~l~lL~~GGvIV~DNvL 230 (278)
T PLN02476 191 -EGSSYDFAFVDAD-----------KR--------MYQDYFELLLQLVRVGGVIVMDNVL 230 (278)
T ss_pred -cCCCCCEEEECCC-----------HH--------HHHHHHHHHHHhcCCCcEEEEecCc
Confidence 1246899988765 11 1333333 345677765 4668884
No 203
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=62.79 E-value=10 Score=42.27 Aligned_cols=44 Identities=18% Similarity=0.064 Sum_probs=35.3
Q ss_pred CCcceecccccccHHHHHHHhc-CCCccEEEEcCchhHHHHHHHhcC
Q psy12304 116 TPLKCLDLFSGCGGLMEGLCQA-GVAKPCWSVELERSEAASYDANFQ 161 (620)
Q Consensus 116 ~~l~~~dLFsG~Gg~s~Gl~~a-G~~~~~~a~e~d~~a~~ty~~N~p 161 (620)
..-++||+-||.|+++..+... |. .+.++|+++.+.+.-+.|..
T Consensus 266 ~~~~vLDiGcG~G~~~~~la~~~~~--~v~gvDiS~~~l~~A~~~~~ 310 (475)
T PLN02336 266 PGQKVLDVGCGIGGGDFYMAENFDV--HVVGIDLSVNMISFALERAI 310 (475)
T ss_pred CCCEEEEEeccCCHHHHHHHHhcCC--EEEEEECCHHHHHHHHHHhh
Confidence 3458999999999988877764 54 48999999999888777653
No 204
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=60.44 E-value=8.3 Score=40.86 Aligned_cols=41 Identities=22% Similarity=0.324 Sum_probs=30.1
Q ss_pred CCcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHH
Q psy12304 116 TPLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYD 157 (620)
Q Consensus 116 ~~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~ 157 (620)
...+||||+||=||=-.=+..+++ .-.+++|++..+++--+
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i-~~~vg~Dis~~si~ea~ 102 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKI-KHYVGIDISEESIEEAR 102 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT--SEEEEEES-HHHHHHHH
T ss_pred CCCeEEEecCCCchhHHHHHhcCC-CEEEEEeCCHHHHHHHH
Confidence 678999999999997667777898 78999999987765433
No 205
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=60.22 E-value=80 Score=32.93 Aligned_cols=145 Identities=13% Similarity=0.192 Sum_probs=71.4
Q ss_pred ccccHHHH----HHHhcCCCccEEEEcCchhHHHHHHHhcCC--------CcccccchHHHHHHhhcccccccCcCCCCC
Q psy12304 125 SGCGGLME----GLCQAGVAKPCWSVELERSEAASYDANFQE--------CSVIQDDCNLVLKSLLKGHTQHKGVSLPQK 192 (620)
Q Consensus 125 sG~Gg~s~----Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p~--------~~~~~~di~~~~~~~~~~~~~~~~~~~p~~ 192 (620)
-|+|+... .|...|...-+..+|.++..++....-..+ ..+...+..+ + ..
T Consensus 6 IGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~~~----------------l-~~ 68 (306)
T cd05291 6 IGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDYSD----------------C-KD 68 (306)
T ss_pred ECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCHHH----------------h-CC
Confidence 36777543 334457633477889887776554432211 1111112111 1 11
Q ss_pred CccceEEecCCCCccccccccchhhhcccccchHHHHHHHhhhcCCcEEEEccccccccccchhHHHHHHHHHHcCCCE-
Q psy12304 193 HEVDLIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLSFCDLFQPKYIILENVTGLVHFNKNEILQCIFHCLLKMNYQ- 271 (620)
Q Consensus 193 ~~vD~i~gGpPCQ~fS~~~~~~~~~~~d~r~~L~~~~~~~i~~~~P~~~v~ENV~gl~~~~~~~~~~~i~~~l~~~GY~- 271 (620)
.++=++++|.|.++ ...| .+.-..+..++.++.+-|+.+.|+.+++ ||.+-. +++-.++..+ .||.
T Consensus 69 aDIVIitag~~~~~--g~~R---~dll~~N~~i~~~~~~~i~~~~~~~~vi-vvsNP~-----d~~~~~~~~~--~g~p~ 135 (306)
T cd05291 69 ADIVVITAGAPQKP--GETR---LDLLEKNAKIMKSIVPKIKASGFDGIFL-VASNPV-----DVITYVVQKL--SGLPK 135 (306)
T ss_pred CCEEEEccCCCCCC--CCCH---HHHHHHHHHHHHHHHHHHHHhCCCeEEE-EecChH-----HHHHHHHHHH--hCcCH
Confidence 24445666776553 1111 1222234467888888899999987543 332211 1222222221 1221
Q ss_pred ------------EEEEEEecCCCCCcccccEEEEEEecCC
Q psy12304 272 ------------VTFDVLQSGNYGVAQSRNRVVILASKPG 299 (620)
Q Consensus 272 ------------v~~~~l~A~~yGvPQ~R~R~fivg~~~~ 299 (620)
.+...+=|..+|++..--+.++||...+
T Consensus 136 ~~v~g~gt~LDs~R~~~~la~~l~v~~~~v~~~V~G~Hg~ 175 (306)
T cd05291 136 NRVIGTGTSLDTARLRRALAEKLNVDPRSVHAYVLGEHGD 175 (306)
T ss_pred HHEeeccchHHHHHHHHHHHHHHCCCcccceEEEEecCCC
Confidence 1112223445678887788899997643
No 206
>PLN03075 nicotianamine synthase; Provisional
Probab=59.21 E-value=45 Score=34.76 Aligned_cols=45 Identities=13% Similarity=-0.013 Sum_probs=33.8
Q ss_pred CCcceecccccccHHHHHHHhcCC--CccEEEEcCchhHHHHHHHhc
Q psy12304 116 TPLKCLDLFSGCGGLMEGLCQAGV--AKPCWSVELERSEAASYDANF 160 (620)
Q Consensus 116 ~~l~~~dLFsG~Gg~s~Gl~~aG~--~~~~~a~e~d~~a~~ty~~N~ 160 (620)
.+=+|+|+=||.||++.-+..++. .-.+..+|+|+.|++.-++++
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~ 169 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLV 169 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHh
Confidence 344799999999988765554432 124779999999999888877
No 207
>PRK11524 putative methyltransferase; Provisional
Probab=58.78 E-value=12 Score=38.79 Aligned_cols=40 Identities=15% Similarity=0.021 Sum_probs=35.5
Q ss_pred ceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhc
Q psy12304 119 KCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANF 160 (620)
Q Consensus 119 ~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~ 160 (620)
.|||-|+|.|.-.++.++.|- --.++|+++..++.-....
T Consensus 211 ~VLDPF~GSGTT~~AA~~lgR--~~IG~Ei~~~Y~~~a~~Rl 250 (284)
T PRK11524 211 IVLDPFAGSFTTGAVAKASGR--KFIGIEINSEYIKMGLRRL 250 (284)
T ss_pred EEEECCCCCcHHHHHHHHcCC--CEEEEeCCHHHHHHHHHHH
Confidence 599999999999999999995 4789999999998877765
No 208
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=58.72 E-value=16 Score=39.20 Aligned_cols=74 Identities=18% Similarity=0.227 Sum_probs=45.0
Q ss_pred cEEEEcCchhHHHHHHHhcCCCcc------cccchHHHHHHhhcccccccCcCCCCC-CccceEEecCCCCccccccccc
Q psy12304 142 PCWSVELERSEAASYDANFQECSV------IQDDCNLVLKSLLKGHTQHKGVSLPQK-HEVDLIVAGPPCQGFSQLNRAR 214 (620)
Q Consensus 142 ~~~a~e~d~~a~~ty~~N~p~~~~------~~~di~~~~~~~~~~~~~~~~~~~p~~-~~vD~i~gGpPCQ~fS~~~~~~ 214 (620)
..+++|+|+..++.-+.|--.+.+ ...|+.. ++.+ +.+|+++.-||= |-
T Consensus 256 ~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~----------------l~~~~~~~gvvI~NPPY------Ge-- 311 (381)
T COG0116 256 IIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATD----------------LKEPLEEYGVVISNPPY------GE-- 311 (381)
T ss_pred eEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhh----------------CCCCCCcCCEEEeCCCc------ch--
Confidence 467999999999999998654432 2233332 2223 678999999992 21
Q ss_pred hhhhcccccchHHHHHHHhhhcCCc
Q psy12304 215 ELEKSKLKNGLVFTFLSFCDLFQPK 239 (620)
Q Consensus 215 ~~~~~d~r~~L~~~~~~~i~~~~P~ 239 (620)
+-+....-..|+.+|.+.++..-+.
T Consensus 312 Rlg~~~~v~~LY~~fg~~lk~~~~~ 336 (381)
T COG0116 312 RLGSEALVAKLYREFGRTLKRLLAG 336 (381)
T ss_pred hcCChhhHHHHHHHHHHHHHHHhcC
Confidence 1111112334787888777665444
No 209
>KOG0820|consensus
Probab=57.91 E-value=25 Score=35.92 Aligned_cols=79 Identities=25% Similarity=0.257 Sum_probs=55.5
Q ss_pred CcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcCCCcccccchHHHHHHhhcccccccCcCCCCCCccc
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQECSVIQDDCNLVLKSLLKGHTQHKGVSLPQKHEVD 196 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p~~~~~~~di~~~~~~~~~~~~~~~~~~~p~~~~vD 196 (620)
.=.+|+.=-|.|.|...|-++|- .+.|+|+|+.-+.-....+.++..- +-. +++.|+. ...++| -+|
T Consensus 59 tD~VLEvGPGTGnLT~~lLe~~k--kVvA~E~Dprmvael~krv~gtp~~-~kL-----qV~~gD~--lK~d~P---~fd 125 (315)
T KOG0820|consen 59 TDVVLEVGPGTGNLTVKLLEAGK--KVVAVEIDPRMVAELEKRVQGTPKS-GKL-----QVLHGDF--LKTDLP---RFD 125 (315)
T ss_pred CCEEEEeCCCCCHHHHHHHHhcC--eEEEEecCcHHHHHHHHHhcCCCcc-cee-----eEEeccc--ccCCCc---ccc
Confidence 34689999999999999999996 5889999999999998887766521 000 1112222 112455 688
Q ss_pred eEEecCCCCccc
Q psy12304 197 LIVAGPPCQGFS 208 (620)
Q Consensus 197 ~i~gGpPCQ~fS 208 (620)
+.+.-.|=|=-|
T Consensus 126 ~cVsNlPyqISS 137 (315)
T KOG0820|consen 126 GCVSNLPYQISS 137 (315)
T ss_pred eeeccCCccccC
Confidence 888888866444
No 210
>PRK13699 putative methylase; Provisional
Probab=57.21 E-value=15 Score=36.62 Aligned_cols=40 Identities=23% Similarity=0.224 Sum_probs=33.8
Q ss_pred cceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHh
Q psy12304 118 LKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDAN 159 (620)
Q Consensus 118 l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N 159 (620)
=.|+|-|||.|.-..+..+.|- -.+++|+++..++.-...
T Consensus 165 ~~vlDpf~Gsgtt~~aa~~~~r--~~~g~e~~~~y~~~~~~r 204 (227)
T PRK13699 165 AIVLDPFAGSGSTCVAALQSGR--RYIGIELLEQYHRAGQQR 204 (227)
T ss_pred CEEEeCCCCCCHHHHHHHHcCC--CEEEEecCHHHHHHHHHH
Confidence 3699999999999999999996 477999999887765554
No 211
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=54.40 E-value=19 Score=35.09 Aligned_cols=68 Identities=22% Similarity=0.215 Sum_probs=44.7
Q ss_pred cceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcCC---CcccccchHHHHHHhhcccccccCcCCCCCCc
Q psy12304 118 LKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQE---CSVIQDDCNLVLKSLLKGHTQHKGVSLPQKHE 194 (620)
Q Consensus 118 l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p~---~~~~~~di~~~~~~~~~~~~~~~~~~~p~~~~ 194 (620)
-+++|+=||+|-|+..|..-. +-+.|+|+++.|++.-+....+ ..+...|+.. ..| .+.
T Consensus 45 ~~alEvGCs~G~lT~~LA~rC--d~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~---------------~~P-~~~ 106 (201)
T PF05401_consen 45 RRALEVGCSIGVLTERLAPRC--DRLLAVDISPRALARARERLAGLPHVEWIQADVPE---------------FWP-EGR 106 (201)
T ss_dssp EEEEEE--TTSHHHHHHGGGE--EEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT-------------------SS-
T ss_pred ceeEecCCCccHHHHHHHHhh--CceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCC---------------CCC-CCC
Confidence 379999999999999997664 4689999999999998876544 3334444422 122 468
Q ss_pred cceEEecCC
Q psy12304 195 VDLIVAGPP 203 (620)
Q Consensus 195 vD~i~gGpP 203 (620)
+|+|+.+-=
T Consensus 107 FDLIV~SEV 115 (201)
T PF05401_consen 107 FDLIVLSEV 115 (201)
T ss_dssp EEEEEEES-
T ss_pred eeEEEEehH
Confidence 999987643
No 212
>KOG1122|consensus
Probab=53.13 E-value=23 Score=38.35 Aligned_cols=83 Identities=18% Similarity=0.301 Sum_probs=56.4
Q ss_pred CCCCcceecccccccHHHH--H--HHhcCCCccEEEEcCchhHHHHHHHhcCC-----CcccccchHHHHHHhhcccccc
Q psy12304 114 LDTPLKCLDLFSGCGGLME--G--LCQAGVAKPCWSVELERSEAASYDANFQE-----CSVIQDDCNLVLKSLLKGHTQH 184 (620)
Q Consensus 114 ~~~~l~~~dLFsG~Gg~s~--G--l~~aG~~~~~~a~e~d~~a~~ty~~N~p~-----~~~~~~di~~~~~~~~~~~~~~ 184 (620)
.....+++|++|-.||=.. + ++..| +++|+|.+..-++....|... +.+.+.|-.++.
T Consensus 239 Pq~gERIlDmcAAPGGKTt~IAalMkn~G---~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~---------- 305 (460)
T KOG1122|consen 239 PQPGERILDMCAAPGGKTTHIAALMKNTG---VIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFP---------- 305 (460)
T ss_pred CCCCCeecchhcCCCchHHHHHHHHcCCc---eEEecccchHHHHHHHHHHHHhCCCceEEEccCccccc----------
Confidence 4456789999999999442 2 23345 599999999999999999643 344444433220
Q ss_pred cCcCCCCCCccceEEecCCCCccccccc
Q psy12304 185 KGVSLPQKHEVDLIVAGPPCQGFSQLNR 212 (620)
Q Consensus 185 ~~~~~p~~~~vD~i~gGpPCQ~fS~~~~ 212 (620)
...+| +.+|=|.---||.|--...+
T Consensus 306 -~~~~~--~~fDRVLLDAPCSGtgvi~K 330 (460)
T KOG1122|consen 306 -EKEFP--GSFDRVLLDAPCSGTGVISK 330 (460)
T ss_pred -ccccC--cccceeeecCCCCCCccccc
Confidence 11233 37999999999998655544
No 213
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=52.73 E-value=24 Score=33.55 Aligned_cols=43 Identities=14% Similarity=0.070 Sum_probs=32.8
Q ss_pred CCcceecccccccHHHHHHHhc-CCCccEEEEcCchhHHHHHHHhc
Q psy12304 116 TPLKCLDLFSGCGGLMEGLCQA-GVAKPCWSVELERSEAASYDANF 160 (620)
Q Consensus 116 ~~l~~~dLFsG~Gg~s~Gl~~a-G~~~~~~a~e~d~~a~~ty~~N~ 160 (620)
...++|+|=||+|-.++.+... |. ..+.+.|.++ +....+.|.
T Consensus 45 ~~~~VLELGaG~Gl~gi~~a~~~~~-~~Vv~TD~~~-~l~~l~~Ni 88 (173)
T PF10294_consen 45 RGKRVLELGAGTGLPGIAAAKLFGA-ARVVLTDYNE-VLELLRRNI 88 (173)
T ss_dssp TTSEEEETT-TTSHHHHHHHHT-T--SEEEEEE-S--HHHHHHHHH
T ss_pred CCceEEEECCccchhHHHHHhccCC-ceEEEeccch-hhHHHHHHH
Confidence 4568999999999888888887 55 5688999999 988888884
No 214
>KOG2361|consensus
Probab=52.58 E-value=19 Score=36.19 Aligned_cols=41 Identities=10% Similarity=0.139 Sum_probs=34.9
Q ss_pred ceecccccccHHHHHHHh----cCCCccEEEEcCchhHHHHHHHhcC
Q psy12304 119 KCLDLFSGCGGLMEGLCQ----AGVAKPCWSVELERSEAASYDANFQ 161 (620)
Q Consensus 119 ~~~dLFsG~Gg~s~Gl~~----aG~~~~~~a~e~d~~a~~ty~~N~p 161 (620)
+++++=||+|....-+-+ .++ .++|+|.++.|++.++.|-.
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l--~v~acDfsp~Ai~~vk~~~~ 118 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRL--KVYACDFSPRAIELVKKSSG 118 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCe--EEEEcCCChHHHHHHHhccc
Confidence 889999999998877765 344 58999999999999998853
No 215
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=51.32 E-value=38 Score=32.91 Aligned_cols=124 Identities=14% Similarity=0.165 Sum_probs=71.9
Q ss_pred ceecccccccHHHHHHHhcCCCccEEEEcCchhHHH-----HHHHhcCCCcccccchHHHHHHhhcccccccCcCCCCCC
Q psy12304 119 KCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAA-----SYDANFQECSVIQDDCNLVLKSLLKGHTQHKGVSLPQKH 193 (620)
Q Consensus 119 ~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~-----ty~~N~p~~~~~~~di~~~~~~~~~~~~~~~~~~~p~~~ 193 (620)
-.||+-||-|.+-+.+...--.....++|+....+. .-+.+.++..++++|...++... ..++
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~------------~~~~ 87 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRL------------FPPG 87 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHH------------STTT
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhc------------ccCC
Confidence 789999999998877765322236889999876653 34556778888888887765543 2356
Q ss_pred ccceEEecCCCCccccccccchhhhcccccchHHHHHHHh-hhcCCcEEEEccccccccccchhHHHHHHHHHHcC
Q psy12304 194 EVDLIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLSFC-DLFQPKYIILENVTGLVHFNKNEILQCIFHCLLKM 268 (620)
Q Consensus 194 ~vD~i~gGpPCQ~fS~~~~~~~~~~~d~r~~L~~~~~~~i-~~~~P~~~v~ENV~gl~~~~~~~~~~~i~~~l~~~ 268 (620)
.+|-|..-+|+.=+-.-.. ++|- +-..+++.+ ..++|...+ .+..+...++..+++.|.+.
T Consensus 88 ~v~~i~i~FPDPWpK~rH~-krRl-------~~~~fl~~~~~~L~~gG~l------~~~TD~~~y~~~~~~~~~~~ 149 (195)
T PF02390_consen 88 SVDRIYINFPDPWPKKRHH-KRRL-------VNPEFLELLARVLKPGGEL------YFATDVEEYAEWMLEQFEES 149 (195)
T ss_dssp SEEEEEEES-----SGGGG-GGST-------TSHHHHHHHHHHEEEEEEE------EEEES-HHHHHHHHHHHHHH
T ss_pred chheEEEeCCCCCcccchh-hhhc-------CCchHHHHHHHHcCCCCEE------EEEeCCHHHHHHHHHHHHhc
Confidence 8999999999874443222 1221 112333332 345666544 23334456777888887763
No 216
>KOG1499|consensus
Probab=50.39 E-value=16 Score=38.64 Aligned_cols=42 Identities=24% Similarity=0.188 Sum_probs=33.6
Q ss_pred cceecccccccHHHHHHHhcCCCccEEEEcCchhHH---HHHHHhc
Q psy12304 118 LKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEA---ASYDANF 160 (620)
Q Consensus 118 l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~---~ty~~N~ 160 (620)
-+|+|.=||.|-+|+=-.+||. +-++|+|.+..|. +..+.|.
T Consensus 62 K~VlDVGcGtGILS~F~akAGA-~~V~aVe~S~ia~~a~~iv~~N~ 106 (346)
T KOG1499|consen 62 KTVLDVGCGTGILSMFAAKAGA-RKVYAVEASSIADFARKIVKDNG 106 (346)
T ss_pred CEEEEcCCCccHHHHHHHHhCc-ceEEEEechHHHHHHHHHHHhcC
Confidence 4799999999999998889997 7799999887663 3444553
No 217
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=50.15 E-value=26 Score=37.16 Aligned_cols=74 Identities=16% Similarity=0.150 Sum_probs=51.1
Q ss_pred CCCcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcCCCcccccchHHHHHHhhcccccccCcCCCCCCc
Q psy12304 115 DTPLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQECSVIQDDCNLVLKSLLKGHTQHKGVSLPQKHE 194 (620)
Q Consensus 115 ~~~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p~~~~~~~di~~~~~~~~~~~~~~~~~~~p~~~~ 194 (620)
....+++||=|+.||++.=|.+.|. .++|||..+-+-.. .+.|...++.+|--. ..|..+.
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~rG~--~V~AVD~g~l~~~L--~~~~~V~h~~~d~fr---------------~~p~~~~ 270 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRRGM--FVTAVDNGPMAQSL--MDTGQVEHLRADGFK---------------FRPPRKN 270 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHcCC--EEEEEechhcCHhh--hCCCCEEEEeccCcc---------------cCCCCCC
Confidence 3456899999999999999999997 48999977655332 445555555444211 1233567
Q ss_pred cceEEecCCCCcc
Q psy12304 195 VDLIVAGPPCQGF 207 (620)
Q Consensus 195 vD~i~gGpPCQ~f 207 (620)
+|+++.--=|++.
T Consensus 271 vDwvVcDmve~P~ 283 (357)
T PRK11760 271 VDWLVCDMVEKPA 283 (357)
T ss_pred CCEEEEecccCHH
Confidence 8999887666554
No 218
>PHA01634 hypothetical protein
Probab=39.73 E-value=45 Score=30.19 Aligned_cols=44 Identities=11% Similarity=0.012 Sum_probs=39.8
Q ss_pred CcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcC
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQ 161 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p 161 (620)
.-+++|+=|++|.-++=|...|. +-+.|+|.++.-.+.++.|..
T Consensus 29 ~KtV~dIGA~iGdSaiYF~l~GA-K~Vva~E~~~kl~k~~een~k 72 (156)
T PHA01634 29 QRTIQIVGADCGSSALYFLLRGA-SFVVQYEKEEKLRKKWEEVCA 72 (156)
T ss_pred CCEEEEecCCccchhhHHhhcCc-cEEEEeccCHHHHHHHHHHhh
Confidence 34799999999999999999998 789999999999999998864
No 219
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=38.24 E-value=72 Score=31.69 Aligned_cols=104 Identities=13% Similarity=0.116 Sum_probs=72.0
Q ss_pred CCCcceecccccccHHHHHHHhc-CCCccEEEEcCchhHHHHHHHhcCCCcccccchHHHHHHhhcccccccCcCCCCCC
Q psy12304 115 DTPLKCLDLFSGCGGLMEGLCQA-GVAKPCWSVELERSEAASYDANFQECSVIQDDCNLVLKSLLKGHTQHKGVSLPQKH 193 (620)
Q Consensus 115 ~~~l~~~dLFsG~Gg~s~Gl~~a-G~~~~~~a~e~d~~a~~ty~~N~p~~~~~~~di~~~~~~~~~~~~~~~~~~~p~~~ 193 (620)
...-+++||=||.|....=|.+- . .-.+.++|.+++-++.-+...|++....+|+.+. . ...
T Consensus 29 ~~~~~v~DLGCGpGnsTelL~~RwP-~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w-----------~-----p~~ 91 (257)
T COG4106 29 ERPRRVVDLGCGPGNSTELLARRWP-DAVITGIDSSPAMLAKAAQRLPDATFEEADLRTW-----------K-----PEQ 91 (257)
T ss_pred cccceeeecCCCCCHHHHHHHHhCC-CCeEeeccCCHHHHHHHHHhCCCCceecccHhhc-----------C-----CCC
Confidence 35568999999999988777652 2 2368899999999999999999998888888654 1 112
Q ss_pred ccceEEecCCCCccccccccchhhhcccccchHHHHHHHhhhcCCcEEEEccccccc
Q psy12304 194 EVDLIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLSFCDLFQPKYIILENVTGLV 250 (620)
Q Consensus 194 ~vD~i~gGpPCQ~fS~~~~~~~~~~~d~r~~L~~~~~~~i~~~~P~~~v~ENV~gl~ 250 (620)
+.|+|. |++--+- ..| ...-+-|++..+.|--++-=.+++=+
T Consensus 92 ~~dllf--------aNAvlqW---lpd----H~~ll~rL~~~L~Pgg~LAVQmPdN~ 133 (257)
T COG4106 92 PTDLLF--------ANAVLQW---LPD----HPELLPRLVSQLAPGGVLAVQMPDNL 133 (257)
T ss_pred ccchhh--------hhhhhhh---ccc----cHHHHHHHHHhhCCCceEEEECCCcc
Confidence 567774 3332100 001 12335678888899888887777654
No 220
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=36.48 E-value=51 Score=29.22 Aligned_cols=38 Identities=21% Similarity=0.440 Sum_probs=30.6
Q ss_pred EEEEccccccccccchhHHHHHHHHHHcCCCEEEE-EEEecCCCCCc
Q psy12304 240 YIILENVTGLVHFNKNEILQCIFHCLLKMNYQVTF-DVLQSGNYGVA 285 (620)
Q Consensus 240 ~~v~ENV~gl~~~~~~~~~~~i~~~l~~~GY~v~~-~~l~A~~yGvP 285 (620)
-+++||-+|= +..+.+.|.+.|-.++. .+-++++||+-
T Consensus 7 SvFlENk~GR--------L~~~~~~L~eagINiRA~tiAdt~dFGIi 45 (142)
T COG4747 7 SVFLENKPGR--------LASVANKLKEAGINIRAFTIADTGDFGII 45 (142)
T ss_pred EEEecCCcch--------HHHHHHHHHHcCCceEEEEeccccCcceE
Confidence 4788999885 34678899999999985 47899999963
No 221
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=35.81 E-value=65 Score=34.29 Aligned_cols=69 Identities=23% Similarity=0.402 Sum_probs=39.7
Q ss_pred ccceEEecCCCCcccc-cccc--------chh-h---hcc----------cccchHHHHHHHhhhcCCcEEEEccccccc
Q psy12304 194 EVDLIVAGPPCQGFSQ-LNRA--------REL-E---KSK----------LKNGLVFTFLSFCDLFQPKYIILENVTGLV 250 (620)
Q Consensus 194 ~vD~i~gGpPCQ~fS~-~~~~--------~~~-~---~~d----------~r~~L~~~~~~~i~~~~P~~~v~ENV~gl~ 250 (620)
+|-+|+||||-++|-. +|.. +++ + ..| .|++|+ +.-++.+||++|++||+|-=+
T Consensus 43 ~Il~IsG~~~~~~F~~~~gVd~V~LPsl~k~~~G~~~~~d~~~~l~e~~~~Rs~li---l~t~~~fkPDi~IVd~~P~Gl 119 (400)
T COG4671 43 DILIISGGPPAGGFPGPAGVDFVKLPSLIKGDNGEYGLVDLDGDLEETKKLRSQLI---LSTAETFKPDIFIVDKFPFGL 119 (400)
T ss_pred eEEEEeCCCccCCCCCcccCceEecCceEecCCCceeeeecCCCHHHHHHHHHHHH---HHHHHhcCCCEEEEeccccch
Confidence 6778999999999987 3321 011 0 001 133333 233567899999999999322
Q ss_pred cccchhHHHHHHHHHHcCC
Q psy12304 251 HFNKNEILQCIFHCLLKMN 269 (620)
Q Consensus 251 ~~~~~~~~~~i~~~l~~~G 269 (620)
.++ +.-+++.|+..|
T Consensus 120 r~E----L~ptL~yl~~~~ 134 (400)
T COG4671 120 RFE----LLPTLEYLKTTG 134 (400)
T ss_pred hhh----hhHHHHHHhhcC
Confidence 221 334455555555
No 222
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=34.76 E-value=52 Score=35.63 Aligned_cols=42 Identities=21% Similarity=0.332 Sum_probs=34.8
Q ss_pred cceecccccccHHHHHHHhc-CCCccEEEEcCchhHHHHHHHhcC
Q psy12304 118 LKCLDLFSGCGGLMEGLCQA-GVAKPCWSVELERSEAASYDANFQ 161 (620)
Q Consensus 118 l~~~dLFsG~Gg~s~Gl~~a-G~~~~~~a~e~d~~a~~ty~~N~p 161 (620)
-++||+-||.|++..-+... |. .+.++|+++...+.-+.+..
T Consensus 169 ~rVLDIGcG~G~~a~~la~~~g~--~V~giDlS~~~l~~A~~~~~ 211 (383)
T PRK11705 169 MRVLDIGCGWGGLARYAAEHYGV--SVVGVTISAEQQKLAQERCA 211 (383)
T ss_pred CEEEEeCCCccHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhc
Confidence 48999999999999877654 65 48899999999988777764
No 223
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=34.18 E-value=1.2e+02 Score=30.37 Aligned_cols=78 Identities=17% Similarity=0.155 Sum_probs=56.1
Q ss_pred cceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHH-----HHhcCCCcccccchHHHHHHhhcccccccCcCCCCC
Q psy12304 118 LKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASY-----DANFQECSVIQDDCNLVLKSLLKGHTQHKGVSLPQK 192 (620)
Q Consensus 118 l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty-----~~N~p~~~~~~~di~~~~~~~~~~~~~~~~~~~p~~ 192 (620)
-.+||+-||-|.+-.++.+.-=-.-..++|+-...+... +++.++..+++.|..+++.. ++..
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~------------~~~~ 117 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDY------------LIPD 117 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHh------------cCCC
Confidence 468999999999988887654323567899876654332 33444677889999888653 4445
Q ss_pred CccceEEecCCCCcc
Q psy12304 193 HEVDLIVAGPPCQGF 207 (620)
Q Consensus 193 ~~vD~i~gGpPCQ~f 207 (620)
|.+|-|..-+|+.=+
T Consensus 118 ~sl~~I~i~FPDPWp 132 (227)
T COG0220 118 GSLDKIYINFPDPWP 132 (227)
T ss_pred CCeeEEEEECCCCCC
Confidence 689999999998554
No 224
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=31.53 E-value=3.2e+02 Score=29.46 Aligned_cols=132 Identities=14% Similarity=0.116 Sum_probs=79.0
Q ss_pred hcCCCccEEEEcCchhHHHHHHHhc------------CCCcccccchHHHHHHhhcccccccCcCCCCCCccceEEecCC
Q psy12304 136 QAGVAKPCWSVELERSEAASYDANF------------QECSVIQDDCNLVLKSLLKGHTQHKGVSLPQKHEVDLIVAGPP 203 (620)
Q Consensus 136 ~aG~~~~~~a~e~d~~a~~ty~~N~------------p~~~~~~~di~~~~~~~~~~~~~~~~~~~p~~~~vD~i~gGpP 203 (620)
.-|+ +-+.-||.||.-++..++|- |...++++|.-..++.. ...+|+++.-.|
T Consensus 310 yP~~-~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a--------------~~~fD~vIVDl~ 374 (508)
T COG4262 310 YPQV-EQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTA--------------ADMFDVVIVDLP 374 (508)
T ss_pred CCCc-ceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhh--------------cccccEEEEeCC
Confidence 3576 66888999999988877552 33456777776665432 125788988888
Q ss_pred CCccccccccchhhhcccccchH-HHHHHHh-hhcCCcEEEEccccccccccchhHHHHHHHHHHcCCCEEEEEEEecCC
Q psy12304 204 CQGFSQLNRARELEKSKLKNGLV-FTFLSFC-DLFQPKYIILENVTGLVHFNKNEILQCIFHCLLKMNYQVTFDVLQSGN 281 (620)
Q Consensus 204 CQ~fS~~~~~~~~~~~d~r~~L~-~~~~~~i-~~~~P~~~v~ENV~gl~~~~~~~~~~~i~~~l~~~GY~v~~~~l~A~~ 281 (620)
=..--..+| |+ .+|-+.+ +.+++.-.++-.--.-. -.-+.|-.+...+++.||++....+-
T Consensus 375 DP~tps~~r------------lYS~eFY~ll~~~l~e~Gl~VvQags~y--~tp~vfw~i~aTik~AG~~~~Pyhv~--- 437 (508)
T COG4262 375 DPSTPSIGR------------LYSVEFYRLLSRHLAETGLMVVQAGSPY--FTPRVFWRIDATIKSAGYRVWPYHVH--- 437 (508)
T ss_pred CCCCcchhh------------hhhHHHHHHHHHhcCcCceEEEecCCCc--cCCceeeeehhHHHhCcceeeeeEEe---
Confidence 443333332 21 2333333 44566554443322211 12345667889999999998765544
Q ss_pred CCCcccccEEEEEEecCCCC
Q psy12304 282 YGVAQSRNRVVILASKPGYK 301 (620)
Q Consensus 282 yGvPQ~R~R~fivg~~~~~~ 301 (620)
+|..=+.-|++|...+..
T Consensus 438 --VPTFGeWGf~l~~~~~~~ 455 (508)
T COG4262 438 --VPTFGEWGFILAAPGDAD 455 (508)
T ss_pred --cCcccccceeecccccCC
Confidence 444446668888775543
No 225
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=31.19 E-value=96 Score=28.17 Aligned_cols=44 Identities=20% Similarity=0.190 Sum_probs=33.4
Q ss_pred CCCcceecccccccHHHHHHHh-----cCCCccEEEEcCchhHHHHHHHh
Q psy12304 115 DTPLKCLDLFSGCGGLMEGLCQ-----AGVAKPCWSVELERSEAASYDAN 159 (620)
Q Consensus 115 ~~~l~~~dLFsG~Gg~s~Gl~~-----aG~~~~~~a~e~d~~a~~ty~~N 159 (620)
....+++|+.||-|=++.-|.. . ...-+.++|.++...+.-...
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~-~~~~v~~iD~~~~~~~~a~~~ 72 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSS-PNLRVLGIDCNESLVESAQKR 72 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcC-CCCeEEEEECCcHHHHHHHHH
Confidence 4567899999999999988887 3 223588999998776554443
No 226
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=30.64 E-value=1.6e+02 Score=30.68 Aligned_cols=91 Identities=19% Similarity=0.259 Sum_probs=50.6
Q ss_pred ccceEEecCCCCccccccccchhhhcccccchHHHHHHHhhhcCCcEEEE--ccccccccccchhHHHHHHHHHHcCCCE
Q psy12304 194 EVDLIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLSFCDLFQPKYIIL--ENVTGLVHFNKNEILQCIFHCLLKMNYQ 271 (620)
Q Consensus 194 ~vD~i~gGpPCQ~fS~~~~~~~~~~~d~r~~L~~~~~~~i~~~~P~~~v~--ENV~gl~~~~~~~~~~~i~~~l~~~GY~ 271 (620)
++-++++|.|-++- ..| .+.-..+-.++.+++.-|+.+.|+.+++ =|-..+ +-.++.... ||.
T Consensus 68 DiVIitag~p~~~~--~~R---~~l~~~n~~i~~~~~~~i~~~~p~~~viv~sNP~d~--------~~~~~~~~s--g~~ 132 (300)
T cd00300 68 DIVVITAGAPRKPG--ETR---LDLINRNAPILRSVITNLKKYGPDAIILVVSNPVDI--------LTYVAQKLS--GLP 132 (300)
T ss_pred CEEEEcCCCCCCCC--CCH---HHHHHHHHHHHHHHHHHHHHhCCCeEEEEccChHHH--------HHHHHHHHh--CcC
Confidence 55677788775531 111 2222234467888888888888887654 233222 222222221 221
Q ss_pred -------------EEEEEEecCCCCCcccccEEEEEEecCC
Q psy12304 272 -------------VTFDVLQSGNYGVAQSRNRVVILASKPG 299 (620)
Q Consensus 272 -------------v~~~~l~A~~yGvPQ~R~R~fivg~~~~ 299 (620)
.+....=|..+|++...-+.+++|...+
T Consensus 133 ~~kviG~gt~lDs~r~~~~la~~l~v~~~~v~~~viGeHg~ 173 (300)
T cd00300 133 KNRVIGSGTLLDSARFRSLLAEKLDVDPQSVHAYVLGEHGD 173 (300)
T ss_pred HHHEEecCCcHHHHHHHHHHHHHhCCCcccEEEEEEeccCC
Confidence 1122233556788888889999987643
No 227
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=30.38 E-value=77 Score=32.79 Aligned_cols=44 Identities=25% Similarity=0.317 Sum_probs=34.5
Q ss_pred CCCcceecccccccHHHHHHHhc-CCCccEEEEcCchhHHHHHHHhc
Q psy12304 115 DTPLKCLDLFSGCGGLMEGLCQA-GVAKPCWSVELERSEAASYDANF 160 (620)
Q Consensus 115 ~~~l~~~dLFsG~Gg~s~Gl~~a-G~~~~~~a~e~d~~a~~ty~~N~ 160 (620)
..-.++||+=||.||+++=+.+. |. .+.++++++...+-.+...
T Consensus 71 ~~G~~lLDiGCGWG~l~~~aA~~y~v--~V~GvTlS~~Q~~~~~~r~ 115 (283)
T COG2230 71 KPGMTLLDIGCGWGGLAIYAAEEYGV--TVVGVTLSEEQLAYAEKRI 115 (283)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHcCC--EEEEeeCCHHHHHHHHHHH
Confidence 34578999999999999655544 76 5889999998887777643
No 228
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=30.29 E-value=78 Score=31.15 Aligned_cols=75 Identities=20% Similarity=0.212 Sum_probs=47.2
Q ss_pred CCcceecccccccHHHHHHHhc-CCCccEEEEcCchhHHHHHHHhcC-----CCcccccchHHHHHHhhcccccccCcCC
Q psy12304 116 TPLKCLDLFSGCGGLMEGLCQA-GVAKPCWSVELERSEAASYDANFQ-----ECSVIQDDCNLVLKSLLKGHTQHKGVSL 189 (620)
Q Consensus 116 ~~l~~~dLFsG~Gg~s~Gl~~a-G~~~~~~a~e~d~~a~~ty~~N~p-----~~~~~~~di~~~~~~~~~~~~~~~~~~~ 189 (620)
...++||+-||+|=++.-+... |-.-.+.++|+++.-++.-+.|.. +..+..+|.. ...
T Consensus 72 pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~---------------~g~ 136 (209)
T PF01135_consen 72 PGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGS---------------EGW 136 (209)
T ss_dssp TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GG---------------GTT
T ss_pred CCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchh---------------hcc
Confidence 4568999999999888666653 431247899999987777777653 2334444432 123
Q ss_pred CCCCccceEEecCCCC
Q psy12304 190 PQKHEVDLIVAGPPCQ 205 (620)
Q Consensus 190 p~~~~vD~i~gGpPCQ 205 (620)
+..+.+|.|+.+.-|.
T Consensus 137 ~~~apfD~I~v~~a~~ 152 (209)
T PF01135_consen 137 PEEAPFDRIIVTAAVP 152 (209)
T ss_dssp GGG-SEEEEEESSBBS
T ss_pred ccCCCcCEEEEeeccc
Confidence 3445789998887654
No 229
>COG3392 Adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=29.96 E-value=43 Score=34.06 Aligned_cols=33 Identities=27% Similarity=0.258 Sum_probs=28.4
Q ss_pred ceecccccccHHHHHHHhcCCCccEEEEcCchhHH
Q psy12304 119 KCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEA 153 (620)
Q Consensus 119 ~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~ 153 (620)
.+.|||||.|-.+.=|..+|- . +.|+|+.-..-
T Consensus 30 ~f~DiFaGtGVV~~~fkk~~n-~-iiaNDle~ysy 62 (330)
T COG3392 30 IFCDIFAGTGVVGRFFKKAGN-K-IIANDLEYYSY 62 (330)
T ss_pred eeeeeccCccHHHHHHHHhcc-h-hhhchHHHHHH
Confidence 689999999999999999996 4 77999976553
No 230
>KOG2198|consensus
Probab=29.56 E-value=65 Score=34.44 Aligned_cols=89 Identities=20% Similarity=0.247 Sum_probs=55.2
Q ss_pred CcceecccccccHHHHHHHhcCCCc----cEEEEcCchhHHHHHHHhc-----CCCcccccchHHHHHHhhcccccccCc
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQAGVAK----PCWSVELERSEAASYDANF-----QECSVIQDDCNLVLKSLLKGHTQHKGV 187 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~aG~~~----~~~a~e~d~~a~~ty~~N~-----p~~~~~~~di~~~~~~~~~~~~~~~~~ 187 (620)
.=+|||+||-.||=+.-|.++.+.. .+.|+|.|..-+..+.+-. +...+.+.|+...-..... ++.
T Consensus 156 ~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~-----~~~ 230 (375)
T KOG2198|consen 156 GDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLK-----DGN 230 (375)
T ss_pred CCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceeccccccc-----cCc
Confidence 3479999999999999999887633 6899999998877765433 2222222232221100000 000
Q ss_pred CCCCCCccceEEecCCCCcccccc
Q psy12304 188 SLPQKHEVDLIVAGPPCQGFSQLN 211 (620)
Q Consensus 188 ~~p~~~~vD~i~gGpPCQ~fS~~~ 211 (620)
.. ..-.+|=|..--||.+=|...
T Consensus 231 ~~-~~~~fDrVLvDVPCS~Dgt~r 253 (375)
T KOG2198|consen 231 DK-EQLKFDRVLVDVPCSGDGTLR 253 (375)
T ss_pred hh-hhhhcceeEEecccCCCcccc
Confidence 00 123578899999999986654
No 231
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=29.48 E-value=6.1e+02 Score=25.69 Aligned_cols=104 Identities=18% Similarity=0.177 Sum_probs=67.1
Q ss_pred cEEEEcCchhHHHHHHHhcCCCcccccchHHHHHHhhcccccc----------cCcCCC-----CCCccceEEecCCCCc
Q psy12304 142 PCWSVELERSEAASYDANFQECSVIQDDCNLVLKSLLKGHTQH----------KGVSLP-----QKHEVDLIVAGPPCQG 206 (620)
Q Consensus 142 ~~~a~e~d~~a~~ty~~N~p~~~~~~~di~~~~~~~~~~~~~~----------~~~~~p-----~~~~vD~i~gGpPCQ~ 206 (620)
-+.++|-|++..-....-.+...-+.++..++++..+.+.... ...++| ..+++|+++.|-|=-+
T Consensus 31 ~VLvVDaDpd~nL~~~LGve~~~~~lg~~~e~~~k~~~a~~~~~~~~~fk~~~~~~di~~e~~~e~~~~~LLvmGkie~~ 110 (255)
T COG3640 31 NVLVVDADPDSNLPEALGVEEPMKYLGGKRELLKKRTGAEPGGPPGEMFKENPLVSDLPDEYLVENGDIDLLVMGKIEEG 110 (255)
T ss_pred eEEEEeCCCCCChHHhcCCCCCCcccccHHHHHHHHhccCCCCCcccccccCcchhhhhHHHhhhcCCccEEEeccccCC
Confidence 4889999997744444333332345678888877765442210 011222 3457899998877322
Q ss_pred cccccccchhhhcccccchHHHHHHHhhhcCCcEEEEcccccccccc
Q psy12304 207 FSQLNRARELEKSKLKNGLVFTFLSFCDLFQPKYIILENVTGLVHFN 253 (620)
Q Consensus 207 fS~~~~~~~~~~~d~r~~L~~~~~~~i~~~~P~~~v~ENV~gl~~~~ 253 (620)
-+ +.--+-|.|+.++++-+...+=+++++--=.|+-++.
T Consensus 111 Ge--------GC~Cp~~allR~~l~~l~~~~~e~VivDtEAGiEHfg 149 (255)
T COG3640 111 GE--------GCACPMNALLRRLLRHLILNRYEVVIVDTEAGIEHFG 149 (255)
T ss_pred CC--------cccchHHHHHHHHHHHHhcccCcEEEEecccchhhhc
Confidence 22 2334567788999998888889999999888887654
No 232
>TIGR00571 dam DNA adenine methylase (dam). All proteins in this family for which functions are known are DNA-adenine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The DNA adenine methylase (dam) of E. coli and related species is instrumental in distinguishing the newly synthesized strand during DNA replication for methylation-directed mismatch repair. This family includes several phage methylases and a number of different restriction enzyme chromosomal site-specific modification systems.
Probab=28.07 E-value=38 Score=34.60 Aligned_cols=38 Identities=18% Similarity=0.179 Sum_probs=30.9
Q ss_pred ceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhc
Q psy12304 119 KCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANF 160 (620)
Q Consensus 119 ~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~ 160 (620)
+.+|.|+|+|+..+.+.. .-.+.+|+|+.-+..|+.=.
T Consensus 28 ~yvEPF~Gggsv~l~~~~----~~~~lND~n~~Li~~~~~i~ 65 (266)
T TIGR00571 28 CLVEPFVGGGAVFFNLNP----KRYLLNDINEDLINLYKAIK 65 (266)
T ss_pred EEEEecCCcchhheeecC----cEEEEecCCHHHHHHHHHHH
Confidence 799999999998886643 23778999999999998643
No 233
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=27.42 E-value=90 Score=31.18 Aligned_cols=40 Identities=28% Similarity=0.340 Sum_probs=35.3
Q ss_pred cceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHh
Q psy12304 118 LKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDAN 159 (620)
Q Consensus 118 l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N 159 (620)
-++++.-||-|-=..-|...|+ . |.++|+++.|++.+.+.
T Consensus 45 ~rvLvPgCGkg~D~~~LA~~G~-~-V~GvDlS~~Ai~~~~~e 84 (226)
T PRK13256 45 SVCLIPMCGCSIDMLFFLSKGV-K-VIGIELSEKAVLSFFSQ 84 (226)
T ss_pred CeEEEeCCCChHHHHHHHhCCC-c-EEEEecCHHHHHHHHHH
Confidence 5899999999988888999998 5 88999999999998664
No 234
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=26.71 E-value=2e+02 Score=23.62 Aligned_cols=49 Identities=18% Similarity=0.272 Sum_probs=32.1
Q ss_pred cccccHHH----HHHHhcCC--CccEEEEcCchhHHHHHHHhcCCCcccccchHHH
Q psy12304 124 FSGCGGLM----EGLCQAGV--AKPCWSVELERSEAASYDANFQECSVIQDDCNLV 173 (620)
Q Consensus 124 FsG~Gg~s----~Gl~~aG~--~~~~~a~e~d~~a~~ty~~N~p~~~~~~~di~~~ 173 (620)
|-|+|.|. .||..+|+ .++...++.++...+-+...++ ..+...+..++
T Consensus 4 iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~ 58 (96)
T PF03807_consen 4 IIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYG-VQATADDNEEA 58 (96)
T ss_dssp EESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCT-TEEESEEHHHH
T ss_pred EECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhc-cccccCChHHh
Confidence 44888866 55666883 2556577999999999888886 32333344444
No 235
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=24.75 E-value=6.5e+02 Score=26.14 Aligned_cols=93 Identities=19% Similarity=0.178 Sum_probs=48.6
Q ss_pred ccceEEecCCCCccccccccchhhhcccccchHHHHHHHhhhcCCcEEEEccccccccccchhHHHHHHHHHHcCCCE--
Q psy12304 194 EVDLIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLSFCDLFQPKYIILENVTGLVHFNKNEILQCIFHCLLKMNYQ-- 271 (620)
Q Consensus 194 ~vD~i~gGpPCQ~fS~~~~~~~~~~~d~r~~L~~~~~~~i~~~~P~~~v~ENV~gl~~~~~~~~~~~i~~~l~~~GY~-- 271 (620)
++=||++|.|=++ ...| .+.-..+..++.++..-|..+.|+.+++ ||.+- -+++-.++... .||.
T Consensus 66 DivVitag~~rk~--g~~R---~dll~~N~~i~~~~~~~i~~~~p~~~vi-vvsNP-----~d~~t~~~~~~--sg~p~~ 132 (299)
T TIGR01771 66 DLVVITAGAPQKP--GETR---LELVGRNVRIMKSIVPEVVKSGFDGIFL-VATNP-----VDILTYVAWKL--SGFPKN 132 (299)
T ss_pred CEEEECCCCCCCC--CCCH---HHHHHHHHHHHHHHHHHHHHhCCCeEEE-EeCCH-----HHHHHHHHHHH--hCCCHH
Confidence 4446677776332 1111 1222234466778888888888887644 22221 12222222222 1331
Q ss_pred -E----------EEEEEecCCCCCcccccEEEEEEecCC
Q psy12304 272 -V----------TFDVLQSGNYGVAQSRNRVVILASKPG 299 (620)
Q Consensus 272 -v----------~~~~l~A~~yGvPQ~R~R~fivg~~~~ 299 (620)
+ +...+=|..+|++.+.-+.+++|...+
T Consensus 133 ~viG~gt~LDs~R~~~~la~~l~v~~~~V~~~v~GeHG~ 171 (299)
T TIGR01771 133 RVIGSGTVLDTARLRYLLAEKLGVDPQSVHAYIIGEHGD 171 (299)
T ss_pred HEEeccchHHHHHHHHHHHHHhCcCcCeEEEEEEecCCC
Confidence 1 112223556788888889999998743
No 236
>COG4017 Uncharacterized protein conserved in archaea [Function unknown]
Probab=23.03 E-value=1.1e+02 Score=29.82 Aligned_cols=19 Identities=37% Similarity=0.618 Sum_probs=16.1
Q ss_pred HHhhhcCCcEEEEcccccc
Q psy12304 231 SFCDLFQPKYIILENVTGL 249 (620)
Q Consensus 231 ~~i~~~~P~~~v~ENV~gl 249 (620)
+.+..+.|++|++||-.|=
T Consensus 115 e~L~~fnp~vfiVEdP~gn 133 (254)
T COG4017 115 EFLAKFNPKVFIVEDPKGN 133 (254)
T ss_pred HHHhccCCceEEEECCCCC
Confidence 4567899999999999983
No 237
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=21.34 E-value=2.2e+02 Score=27.24 Aligned_cols=104 Identities=12% Similarity=0.199 Sum_probs=51.7
Q ss_pred HHHHHHhcCCCccEEEEcCchhHHHHHHHhcCCCcccccchHHHHHHhhc-ccccc--cCcCCCCCCccceEEecCCCCc
Q psy12304 130 LMEGLCQAGVAKPCWSVELERSEAASYDANFQECSVIQDDCNLVLKSLLK-GHTQH--KGVSLPQKHEVDLIVAGPPCQG 206 (620)
Q Consensus 130 ~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p~~~~~~~di~~~~~~~~~-~~~~~--~~~~~p~~~~vD~i~gGpPCQ~ 206 (620)
++..|..+|+ + +.++|+|+.-++.++.-. ..+....+.+++++... +.... +... ...+.|+++...|+.-
T Consensus 15 ~A~~lA~~G~-~-V~g~D~~~~~v~~l~~g~--~p~~E~~l~~ll~~~~~~~~l~~t~~~~~--ai~~adv~~I~VpTP~ 88 (185)
T PF03721_consen 15 LAAALAEKGH-Q-VIGVDIDEEKVEALNNGE--LPIYEPGLDELLKENVSAGRLRATTDIEE--AIKDADVVFICVPTPS 88 (185)
T ss_dssp HHHHHHHTTS-E-EEEE-S-HHHHHHHHTTS--SSS-CTTHHHHHHHHHHTTSEEEESEHHH--HHHH-SEEEE----EB
T ss_pred HHHHHHhCCC-E-EEEEeCChHHHHHHhhcc--ccccccchhhhhccccccccchhhhhhhh--hhhccceEEEecCCCc
Confidence 4566677897 4 889999999888876543 33444566777766552 22211 1111 0125788887777654
Q ss_pred cccccccchhhhcccccchHHHHHHH-hhhcCC-cEEEEccccc
Q psy12304 207 FSQLNRARELEKSKLKNGLVFTFLSF-CDLFQP-KYIILENVTG 248 (620)
Q Consensus 207 fS~~~~~~~~~~~d~r~~L~~~~~~~-i~~~~P-~~~v~ENV~g 248 (620)
.. .+. ..-+.+.+.++- ...+++ +.+++|=-.-
T Consensus 89 ~~-~~~--------~Dls~v~~a~~~i~~~l~~~~lvV~~STvp 123 (185)
T PF03721_consen 89 DE-DGS--------PDLSYVESAIESIAPVLRPGDLVVIESTVP 123 (185)
T ss_dssp ET-TTS--------BETHHHHHHHHHHHHHHCSCEEEEESSSSS
T ss_pred cc-cCC--------ccHHHHHHHHHHHHHHHhhcceEEEccEEE
Confidence 43 111 112234444443 344555 6777775543
No 238
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=21.16 E-value=2.5e+02 Score=29.43 Aligned_cols=55 Identities=15% Similarity=0.229 Sum_probs=40.2
Q ss_pred ceecccccccHHHHHHHhc-CCCccEEEEcCchhHHHHHHHhcC----CCcccccchHHHH
Q psy12304 119 KCLDLFSGCGGLMEGLCQA-GVAKPCWSVELERSEAASYDANFQ----ECSVIQDDCNLVL 174 (620)
Q Consensus 119 ~~~dLFsG~Gg~s~Gl~~a-G~~~~~~a~e~d~~a~~ty~~N~p----~~~~~~~di~~~~ 174 (620)
.++|.=.|.||-|..+..+ +- -.++|+|.|+.|.+.-+.+.. ...++.++..++.
T Consensus 23 iyVD~TlG~GGHS~~iL~~l~~-g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~l~ 82 (305)
T TIGR00006 23 IYIDCTLGFGGHSKAILEQLGT-GRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFANFF 82 (305)
T ss_pred EEEEeCCCChHHHHHHHHhCCC-CEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHHHH
Confidence 6999999999999988864 32 248999999999987665432 2345556665553
No 239
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=21.03 E-value=2.4e+02 Score=31.86 Aligned_cols=128 Identities=13% Similarity=0.090 Sum_probs=75.9
Q ss_pred CCcceecccccccHHHHHHHhcCCCccEEEEcCchhHHH-----HHHHhcCCCcccccchHHHHHHhhcccccccCcCCC
Q psy12304 116 TPLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAA-----SYDANFQECSVIQDDCNLVLKSLLKGHTQHKGVSLP 190 (620)
Q Consensus 116 ~~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~-----ty~~N~p~~~~~~~di~~~~~~~~~~~~~~~~~~~p 190 (620)
..-.++|+-||-|++-..+...-=.....++|+....+. ..+.|..+..++++|+..+.. .+|
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~------------~~~ 414 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILN------------DLP 414 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHH------------hcC
Confidence 345689999999999888877543346789999876433 233445556667777655432 233
Q ss_pred CCCccceEEecCCCCccccccccchhhhcccccchHHHHHH-HhhhcCCcEEEEccccccccccchhHHHHHHHHHHcCC
Q psy12304 191 QKHEVDLIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLS-FCDLFQPKYIILENVTGLVHFNKNEILQCIFHCLLKMN 269 (620)
Q Consensus 191 ~~~~vD~i~gGpPCQ~fS~~~~~~~~~~~d~r~~L~~~~~~-~i~~~~P~~~v~ENV~gl~~~~~~~~~~~i~~~l~~~G 269 (620)
.+.+|-|..-+|+.=+-.-.+ ++|- +-.+|++ +...++|-..+. +..+...++...+..+.+.+
T Consensus 415 -~~sv~~i~i~FPDPWpKkrh~-krRl-------~~~~fl~~~~~~Lk~gG~i~------~~TD~~~y~~~~~~~~~~~~ 479 (506)
T PRK01544 415 -NNSLDGIYILFPDPWIKNKQK-KKRI-------FNKERLKILQDKLKDNGNLV------FASDIENYFYEAIELIQQNG 479 (506)
T ss_pred -cccccEEEEECCCCCCCCCCc-cccc-------cCHHHHHHHHHhcCCCCEEE------EEcCCHHHHHHHHHHHHhCC
Confidence 357999999999866544322 1221 1123333 234456654332 12334456777777777665
Q ss_pred C
Q psy12304 270 Y 270 (620)
Q Consensus 270 Y 270 (620)
+
T Consensus 480 ~ 480 (506)
T PRK01544 480 N 480 (506)
T ss_pred C
Confidence 3
Done!