Query psy12304
Match_columns 620
No_of_seqs 322 out of 1805
Neff 7.8
Searched_HMMs 29240
Date Fri Aug 16 15:35:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12304.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12304hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3swr_A DNA (cytosine-5)-methyl 100.0 1E-107 4E-112 949.2 48.7 549 1-602 416-1000(1002)
2 3av4_A DNA (cytosine-5)-methyl 100.0 1E-100 5E-105 907.9 42.6 559 1-612 727-1320(1330)
3 4ft4_B DNA (cytosine-5)-methyl 100.0 4E-94 1.4E-98 840.0 38.2 537 2-603 91-744 (784)
4 3g7u_A Cytosine-specific methy 100.0 9.5E-78 3.2E-82 640.7 23.0 354 117-603 2-370 (376)
5 3ubt_Y Modification methylase 100.0 5.6E-68 1.9E-72 559.1 19.4 190 118-347 1-190 (331)
6 2c7p_A Modification methylase 100.0 2.9E-66 9.9E-71 542.6 25.4 316 114-604 8-326 (327)
7 3qv2_A 5-cytosine DNA methyltr 100.0 4.7E-59 1.6E-63 486.9 21.5 176 115-311 8-190 (327)
8 1g55_A DNA cytosine methyltran 100.0 1.1E-59 3.9E-64 497.0 14.8 177 117-311 2-181 (343)
9 4h0n_A DNMT2; SAH binding, tra 100.0 3.1E-57 1.1E-61 474.7 15.0 169 116-301 2-172 (333)
10 4dkj_A Cytosine-specific methy 100.0 3.5E-57 1.2E-61 483.8 10.1 193 114-311 7-248 (403)
11 3me5_A Cytosine-specific methy 100.0 5.8E-55 2E-59 475.6 18.6 182 115-301 86-291 (482)
12 2qrv_A DNA (cytosine-5)-methyl 100.0 1.6E-55 5.5E-60 453.5 12.4 162 113-298 12-182 (295)
13 2qrv_B DNA (cytosine-5)-methyl 100.0 1.1E-29 3.7E-34 247.1 4.4 138 114-300 30-174 (230)
14 2pv0_B DNA (cytosine-5)-methyl 100.0 2.4E-29 8.1E-34 261.0 5.2 138 114-300 186-330 (386)
15 1w4s_A Polybromo, polybromo 1 99.3 2.1E-12 7.2E-17 122.3 5.4 85 1-89 60-144 (174)
16 3swr_A DNA (cytosine-5)-methyl 98.9 1.6E-09 5.5E-14 126.7 7.7 83 2-89 193-283 (1002)
17 3av4_A DNA (cytosine-5)-methyl 98.8 4.9E-09 1.7E-13 125.6 8.1 84 2-89 504-595 (1330)
18 2igt_A SAM dependent methyltra 98.7 7.1E-08 2.4E-12 100.7 14.2 159 118-296 155-323 (332)
19 4dov_A ORC1, origin recognitio 98.7 2.2E-08 7.6E-13 91.1 8.7 79 2-87 75-160 (163)
20 3c0k_A UPF0064 protein YCCW; P 98.2 5.2E-06 1.8E-10 88.6 11.7 136 118-273 222-365 (396)
21 1wy7_A Hypothetical protein PH 97.9 5.2E-05 1.8E-09 72.6 10.1 117 117-273 50-170 (207)
22 2frn_A Hypothetical protein PH 97.7 7.9E-05 2.7E-09 75.5 9.0 119 117-274 126-253 (278)
23 3ajd_A Putative methyltransfer 97.7 9.5E-05 3.3E-09 74.6 9.2 135 117-263 84-228 (274)
24 2yxd_A Probable cobalt-precorr 97.6 0.0008 2.7E-08 62.3 13.0 120 117-281 36-160 (183)
25 4dmg_A Putative uncharacterize 97.5 0.0003 1E-08 74.8 10.9 130 117-272 215-351 (393)
26 2b78_A Hypothetical protein SM 97.5 0.00031 1.1E-08 74.5 10.9 79 118-208 214-299 (385)
27 3cgg_A SAM-dependent methyltra 97.5 0.00083 2.9E-08 62.8 12.8 148 117-297 47-194 (195)
28 2fpo_A Methylase YHHF; structu 97.5 0.00021 7.1E-09 68.5 8.1 71 118-203 56-131 (202)
29 2ift_A Putative methylase HI07 97.4 0.00021 7.2E-09 68.4 7.3 73 118-204 55-135 (201)
30 3lpm_A Putative methyltransfer 97.4 0.0014 5E-08 65.1 13.2 160 117-299 50-220 (259)
31 3gdh_A Trimethylguanosine synt 97.4 0.00022 7.5E-09 70.0 6.9 76 117-210 79-160 (241)
32 2as0_A Hypothetical protein PH 97.4 0.00062 2.1E-08 72.4 10.7 135 117-272 218-360 (396)
33 3k6r_A Putative transferase PH 97.4 0.00017 5.7E-09 73.0 5.7 119 118-274 127-253 (278)
34 3p9n_A Possible methyltransfer 97.3 0.0004 1.4E-08 65.5 8.0 74 117-204 45-123 (189)
35 1m4z_A Origin recognition comp 97.2 0.0004 1.4E-08 67.4 6.4 79 1-86 86-189 (238)
36 2fl7_A Regulatory protein SIR3 97.2 0.00039 1.3E-08 67.1 5.8 81 1-86 86-189 (232)
37 3bt7_A TRNA (uracil-5-)-methyl 97.2 0.00086 2.9E-08 70.7 8.9 85 118-205 215-306 (369)
38 1wxx_A TT1595, hypothetical pr 97.1 0.0024 8.4E-08 67.5 12.2 133 117-272 210-350 (382)
39 1ne2_A Hypothetical protein TA 97.1 0.00062 2.1E-08 64.7 6.8 73 117-208 52-124 (200)
40 3evz_A Methyltransferase; NYSG 97.1 0.0044 1.5E-07 60.0 12.4 155 117-298 56-220 (230)
41 3q87_B N6 adenine specific DNA 97.1 0.006 2E-07 56.5 12.7 138 118-299 25-164 (170)
42 3v97_A Ribosomal RNA large sub 97.0 0.001 3.5E-08 76.0 8.5 77 118-209 541-624 (703)
43 3m4x_A NOL1/NOP2/SUN family pr 97.0 0.0026 9E-08 68.7 11.0 81 117-212 106-193 (456)
44 2esr_A Methyltransferase; stru 97.0 0.0013 4.3E-08 61.1 7.2 73 117-204 32-110 (177)
45 3m6w_A RRNA methylase; rRNA me 97.0 0.0042 1.4E-07 67.2 12.3 82 117-212 102-188 (464)
46 1ws6_A Methyltransferase; stru 96.9 0.002 7E-08 58.9 7.7 75 118-205 43-121 (171)
47 3a27_A TYW2, uncharacterized p 96.8 0.004 1.4E-07 62.6 10.1 71 118-204 121-196 (272)
48 3e05_A Precorrin-6Y C5,15-meth 96.8 0.011 3.7E-07 56.1 12.6 122 117-277 41-167 (204)
49 3axs_A Probable N(2),N(2)-dime 96.8 0.0013 4.5E-08 69.7 6.6 74 117-205 53-136 (392)
50 1yzh_A TRNA (guanine-N(7)-)-me 96.7 0.0081 2.8E-07 57.6 11.1 131 118-276 43-180 (214)
51 2fhp_A Methylase, putative; al 96.7 0.0022 7.4E-08 59.8 6.8 75 117-203 45-125 (187)
52 1ixk_A Methyltransferase; open 96.7 0.0041 1.4E-07 63.9 8.9 81 117-212 119-205 (315)
53 3hnr_A Probable methyltransfer 96.7 0.035 1.2E-06 53.0 15.0 69 117-203 46-115 (220)
54 3mti_A RRNA methylase; SAM-dep 96.6 0.0059 2E-07 56.9 8.7 137 117-275 23-166 (185)
55 2b9e_A NOL1/NOP2/SUN domain fa 96.6 0.0022 7.5E-08 65.8 5.8 83 117-212 103-192 (309)
56 3e8s_A Putative SAM dependent 96.5 0.043 1.5E-06 52.3 14.8 75 117-205 53-127 (227)
57 2yxl_A PH0851 protein, 450AA l 96.5 0.011 3.9E-07 63.7 11.7 81 118-212 261-348 (450)
58 3njr_A Precorrin-6Y methylase; 96.5 0.019 6.3E-07 54.9 11.8 116 117-275 56-177 (204)
59 2ozv_A Hypothetical protein AT 96.5 0.027 9.3E-07 55.9 13.5 83 117-207 37-128 (260)
60 1uwv_A 23S rRNA (uracil-5-)-me 96.5 0.0094 3.2E-07 64.1 10.7 117 118-274 288-410 (433)
61 1iy9_A Spermidine synthase; ro 96.5 0.044 1.5E-06 55.0 14.9 149 117-298 76-236 (275)
62 3h2b_A SAM-dependent methyltra 96.5 0.036 1.2E-06 52.2 13.4 145 117-298 42-195 (203)
63 2dul_A N(2),N(2)-dimethylguano 96.4 0.0048 1.6E-07 65.1 7.7 74 117-205 48-142 (378)
64 2jjq_A Uncharacterized RNA met 96.4 0.0038 1.3E-07 67.0 6.8 69 118-205 292-364 (425)
65 1l3i_A Precorrin-6Y methyltran 96.4 0.021 7.2E-07 52.8 11.3 119 117-277 34-159 (192)
66 2b3t_A Protein methyltransfera 96.4 0.011 3.8E-07 59.2 9.9 76 117-209 110-191 (276)
67 2frx_A Hypothetical protein YE 96.4 0.0097 3.3E-07 64.8 9.9 82 117-212 118-205 (479)
68 1nv8_A HEMK protein; class I a 96.4 0.0028 9.6E-08 64.2 5.3 73 118-209 125-207 (284)
69 2yx1_A Hypothetical protein MJ 96.4 0.0022 7.5E-08 66.6 4.5 68 117-205 196-269 (336)
70 1sqg_A SUN protein, FMU protei 96.4 0.0077 2.6E-07 64.6 8.9 83 117-212 247-333 (429)
71 3pfg_A N-methyltransferase; N, 96.3 0.026 9E-07 55.7 11.9 68 117-202 51-118 (263)
72 1inl_A Spermidine synthase; be 96.3 0.046 1.6E-06 55.5 13.6 150 118-298 92-252 (296)
73 2f8l_A Hypothetical protein LM 96.2 0.013 4.6E-07 60.7 9.2 152 116-286 130-294 (344)
74 3eey_A Putative rRNA methylase 96.1 0.018 6.1E-07 54.1 9.3 73 118-204 24-103 (197)
75 2ih2_A Modification methylase 96.1 0.015 5.1E-07 61.8 9.6 153 118-298 41-211 (421)
76 4dzr_A Protein-(glutamine-N5) 96.1 0.0072 2.5E-07 57.3 6.4 84 116-210 30-117 (215)
77 1y8c_A S-adenosylmethionine-de 96.1 0.031 1.1E-06 54.1 11.0 68 117-202 38-109 (246)
78 3grz_A L11 mtase, ribosomal pr 96.1 0.0081 2.8E-07 57.0 6.5 117 117-276 61-183 (205)
79 3lcc_A Putative methyl chlorid 96.0 0.07 2.4E-06 51.6 13.3 149 118-297 68-226 (235)
80 3m33_A Uncharacterized protein 95.9 0.016 5.3E-07 56.1 7.7 114 117-273 49-162 (226)
81 3e23_A Uncharacterized protein 95.8 0.082 2.8E-06 50.0 12.4 134 117-282 44-187 (211)
82 2fca_A TRNA (guanine-N(7)-)-me 95.8 0.087 3E-06 50.4 12.6 130 118-275 40-176 (213)
83 2oo3_A Protein involved in cat 95.8 0.0087 3E-07 60.0 5.4 73 118-203 93-168 (283)
84 3ll7_A Putative methyltransfer 95.8 0.0067 2.3E-07 64.5 4.7 74 118-206 95-175 (410)
85 2oyr_A UPF0341 protein YHIQ; a 95.7 0.007 2.4E-07 60.4 4.3 71 118-204 90-174 (258)
86 1xdz_A Methyltransferase GIDB; 95.7 0.17 6E-06 49.1 14.5 147 117-307 71-228 (240)
87 2qm3_A Predicted methyltransfe 95.7 0.059 2E-06 56.5 11.7 125 117-277 173-308 (373)
88 3bwc_A Spermidine synthase; SA 95.7 0.094 3.2E-06 53.3 12.9 150 117-298 96-258 (304)
89 2pt6_A Spermidine synthase; tr 95.6 0.25 8.6E-06 50.6 16.0 148 117-298 117-277 (321)
90 2r6z_A UPF0341 protein in RSP 95.6 0.019 6.4E-07 57.2 7.2 74 118-204 85-171 (258)
91 2h1r_A Dimethyladenosine trans 95.6 0.0052 1.8E-07 62.6 3.2 70 118-206 44-118 (299)
92 3fut_A Dimethyladenosine trans 95.6 0.011 3.7E-07 59.4 5.4 69 119-203 49-119 (271)
93 3tma_A Methyltransferase; thum 95.5 0.012 4.1E-07 61.3 5.4 73 117-204 204-282 (354)
94 4fzv_A Putative methyltransfer 95.5 0.057 1.9E-06 56.4 10.4 135 117-265 149-303 (359)
95 1qam_A ERMC' methyltransferase 95.4 0.017 5.7E-07 57.0 6.0 53 117-171 31-86 (244)
96 3tm4_A TRNA (guanine N2-)-meth 95.4 0.016 5.5E-07 60.9 5.9 123 117-273 218-347 (373)
97 1o54_A SAM-dependent O-methylt 95.3 0.064 2.2E-06 53.5 10.1 114 117-272 113-233 (277)
98 3tqs_A Ribosomal RNA small sub 95.3 0.009 3.1E-07 59.5 3.6 53 118-172 31-86 (255)
99 2ipx_A RRNA 2'-O-methyltransfe 95.3 0.099 3.4E-06 50.5 11.1 145 117-297 78-231 (233)
100 3dmg_A Probable ribosomal RNA 95.3 0.014 4.8E-07 61.6 5.2 74 116-206 233-310 (381)
101 1m6y_A S-adenosyl-methyltransf 95.3 0.023 7.9E-07 57.9 6.6 79 118-206 28-110 (301)
102 1yb2_A Hypothetical protein TA 95.3 0.14 4.9E-06 50.9 12.4 114 116-273 110-232 (275)
103 2qfm_A Spermine synthase; sper 95.3 0.2 6.9E-06 52.1 13.6 152 116-297 188-360 (364)
104 2ex4_A Adrenal gland protein A 95.2 0.1 3.5E-06 50.6 11.0 132 116-276 79-223 (241)
105 3dtn_A Putative methyltransfer 95.2 0.094 3.2E-06 50.5 10.5 72 116-205 44-120 (234)
106 2nxc_A L11 mtase, ribosomal pr 95.2 0.055 1.9E-06 53.5 8.9 117 117-275 121-241 (254)
107 2h00_A Methyltransferase 10 do 95.2 0.023 7.7E-07 55.9 6.0 79 117-208 66-154 (254)
108 2i7c_A Spermidine synthase; tr 95.1 0.4 1.4E-05 48.1 15.2 150 117-298 79-239 (283)
109 3jwh_A HEN1; methyltransferase 95.1 0.078 2.7E-06 50.5 9.4 45 117-161 30-74 (217)
110 3k0b_A Predicted N6-adenine-sp 95.1 0.025 8.5E-07 59.9 6.3 72 117-204 202-317 (393)
111 1zx0_A Guanidinoacetate N-meth 95.0 0.086 2.9E-06 51.1 9.6 70 117-200 61-134 (236)
112 3dxy_A TRNA (guanine-N(7)-)-me 95.0 0.05 1.7E-06 52.5 7.7 78 117-206 35-117 (218)
113 1fbn_A MJ fibrillarin homologu 94.9 0.21 7.1E-06 48.2 12.1 145 117-298 75-228 (230)
114 3gru_A Dimethyladenosine trans 94.9 0.016 5.6E-07 58.8 4.2 70 117-203 51-123 (295)
115 3g89_A Ribosomal RNA small sub 94.9 0.22 7.6E-06 48.9 12.3 148 116-306 80-237 (249)
116 3mb5_A SAM-dependent methyltra 94.8 0.099 3.4E-06 51.2 9.5 111 117-269 94-211 (255)
117 2pxx_A Uncharacterized protein 94.8 0.024 8.1E-07 53.7 4.8 72 117-204 43-117 (215)
118 3adn_A Spermidine synthase; am 94.8 0.13 4.3E-06 52.2 10.5 149 117-298 84-245 (294)
119 1zq9_A Probable dimethyladenos 94.7 0.013 4.5E-07 59.2 3.0 73 117-208 29-107 (285)
120 3jwg_A HEN1, methyltransferase 94.7 0.095 3.3E-06 49.9 9.0 45 117-161 30-74 (219)
121 3ldu_A Putative methylase; str 94.7 0.027 9.1E-07 59.5 5.4 71 117-203 196-310 (385)
122 3g5l_A Putative S-adenosylmeth 94.7 0.14 4.7E-06 50.0 10.3 72 116-203 44-117 (253)
123 3ldg_A Putative uncharacterize 94.6 0.033 1.1E-06 58.8 5.9 72 117-204 195-310 (384)
124 1xtp_A LMAJ004091AAA; SGPP, st 94.6 0.11 3.9E-06 50.4 9.5 148 116-295 93-252 (254)
125 1g8a_A Fibrillarin-like PRE-rR 94.6 0.24 8.1E-06 47.5 11.6 75 117-203 74-152 (227)
126 3sm3_A SAM-dependent methyltra 94.6 0.28 9.7E-06 46.7 12.2 44 117-162 31-74 (235)
127 1o9g_A RRNA methyltransferase; 94.6 0.039 1.3E-06 54.1 6.0 46 116-161 51-98 (250)
128 3d2l_A SAM-dependent methyltra 94.4 0.33 1.1E-05 46.6 12.2 66 118-202 35-104 (243)
129 2pwy_A TRNA (adenine-N(1)-)-me 94.4 0.14 4.9E-06 49.9 9.6 115 117-272 97-218 (258)
130 3m70_A Tellurite resistance pr 94.4 0.045 1.6E-06 54.7 6.1 72 116-205 120-195 (286)
131 1mjf_A Spermidine synthase; sp 94.3 0.07 2.4E-06 53.6 7.2 145 118-298 77-239 (281)
132 4dcm_A Ribosomal RNA large sub 94.3 0.044 1.5E-06 57.6 5.8 72 118-205 224-303 (375)
133 2vdv_E TRNA (guanine-N(7)-)-me 94.2 0.056 1.9E-06 52.9 6.0 80 116-207 49-141 (246)
134 3tfw_A Putative O-methyltransf 94.1 0.095 3.2E-06 51.4 7.6 73 117-203 64-145 (248)
135 3ftd_A Dimethyladenosine trans 94.1 0.027 9.1E-07 55.8 3.4 53 117-171 32-86 (249)
136 3hm2_A Precorrin-6Y C5,15-meth 94.0 0.3 1E-05 44.4 10.4 119 117-275 26-150 (178)
137 2okc_A Type I restriction enzy 94.0 0.28 9.5E-06 52.7 11.5 76 117-209 172-268 (445)
138 1vbf_A 231AA long hypothetical 93.9 0.05 1.7E-06 52.4 5.0 73 117-206 71-146 (231)
139 1dus_A MJ0882; hypothetical pr 93.8 0.093 3.2E-06 48.4 6.5 70 117-204 53-129 (194)
140 3r0q_C Probable protein argini 93.8 0.099 3.4E-06 54.9 7.4 69 116-202 63-137 (376)
141 1i9g_A Hypothetical protein RV 93.8 0.27 9.3E-06 48.7 10.3 114 117-271 100-223 (280)
142 3duw_A OMT, O-methyltransferas 93.8 0.29 9.8E-06 46.7 10.1 76 117-204 59-143 (223)
143 3lbf_A Protein-L-isoaspartate 93.7 0.071 2.4E-06 50.5 5.6 73 116-205 77-154 (210)
144 1ve3_A Hypothetical protein PH 93.6 0.11 3.8E-06 49.5 6.8 70 117-203 39-112 (227)
145 3bzb_A Uncharacterized protein 93.4 0.16 5.3E-06 50.9 7.7 42 118-160 81-123 (281)
146 3ofk_A Nodulation protein S; N 93.2 0.085 2.9E-06 50.1 5.3 69 116-202 51-122 (216)
147 2gb4_A Thiopurine S-methyltran 93.2 0.082 2.8E-06 52.3 5.3 42 117-160 69-110 (252)
148 3tr6_A O-methyltransferase; ce 93.2 0.26 8.9E-06 47.0 8.7 76 117-203 65-149 (225)
149 2y1w_A Histone-arginine methyl 93.1 0.23 7.9E-06 51.4 8.8 99 117-246 51-155 (348)
150 2p35_A Trans-aconitate 2-methy 93.0 0.17 5.9E-06 49.3 7.3 71 116-204 33-105 (259)
151 3iv6_A Putative Zn-dependent a 92.9 0.21 7.2E-06 49.6 7.8 78 117-207 46-123 (261)
152 3ntv_A MW1564 protein; rossman 92.9 0.13 4.5E-06 49.8 6.2 74 117-203 72-151 (232)
153 2o07_A Spermidine synthase; st 92.9 0.16 5.4E-06 51.7 7.0 152 117-298 96-256 (304)
154 3bxo_A N,N-dimethyltransferase 92.9 0.13 4.5E-06 49.4 6.1 66 117-200 41-106 (239)
155 2avd_A Catechol-O-methyltransf 92.8 0.34 1.2E-05 46.3 8.9 78 117-203 70-154 (229)
156 3uzu_A Ribosomal RNA small sub 92.8 0.059 2E-06 54.2 3.5 55 117-172 43-101 (279)
157 2gpy_A O-methyltransferase; st 92.6 0.17 5.9E-06 48.7 6.6 75 118-204 56-136 (233)
158 3kkz_A Uncharacterized protein 92.6 0.18 6.2E-06 49.7 6.8 75 116-207 46-127 (267)
159 2b25_A Hypothetical protein; s 92.6 0.19 6.7E-06 51.5 7.3 44 117-160 106-150 (336)
160 3ccf_A Cyclopropane-fatty-acyl 92.5 0.25 8.7E-06 49.0 7.9 69 117-203 58-126 (279)
161 1i1n_A Protein-L-isoaspartate 92.5 0.13 4.6E-06 49.1 5.6 74 117-205 78-162 (226)
162 1ri5_A MRNA capping enzyme; me 92.4 0.084 2.9E-06 52.7 4.2 71 117-202 65-141 (298)
163 3id6_C Fibrillarin-like rRNA/T 92.4 0.82 2.8E-05 44.5 11.1 148 116-298 76-231 (232)
164 1uir_A Polyamine aminopropyltr 92.3 0.23 7.9E-06 50.7 7.2 150 118-298 79-242 (314)
165 1wzn_A SAM-dependent methyltra 92.2 0.18 6.2E-06 49.0 6.2 66 117-200 42-111 (252)
166 2xvm_A Tellurite resistance pr 92.2 0.18 6.2E-06 46.8 5.9 69 117-203 33-106 (199)
167 2fyt_A Protein arginine N-meth 92.2 0.2 7E-06 51.7 6.8 69 117-202 65-139 (340)
168 3dli_A Methyltransferase; PSI- 92.1 0.25 8.7E-06 47.7 7.1 67 117-201 42-108 (240)
169 3lec_A NADB-rossmann superfami 92.1 0.14 4.7E-06 49.9 5.0 43 118-160 23-65 (230)
170 4azs_A Methyltransferase WBDD; 92.1 0.19 6.5E-06 55.8 6.8 70 116-200 66-140 (569)
171 3gjy_A Spermidine synthase; AP 92.1 0.61 2.1E-05 47.6 10.0 122 116-268 89-219 (317)
172 3bkw_A MLL3908 protein, S-aden 92.0 0.23 7.7E-06 47.8 6.6 71 117-203 44-116 (243)
173 2p7i_A Hypothetical protein; p 92.0 0.22 7.5E-06 47.9 6.4 67 118-202 44-111 (250)
174 2gs9_A Hypothetical protein TT 91.9 0.19 6.5E-06 47.4 5.7 69 116-203 36-104 (211)
175 3u81_A Catechol O-methyltransf 91.8 0.2 6.7E-06 48.0 5.8 104 117-247 59-172 (221)
176 4hc4_A Protein arginine N-meth 91.7 0.14 4.6E-06 53.9 4.8 65 119-200 86-155 (376)
177 1xj5_A Spermidine synthase 1; 91.6 0.29 9.8E-06 50.5 7.1 73 117-203 121-203 (334)
178 1dl5_A Protein-L-isoaspartate 91.6 0.13 4.4E-06 52.5 4.4 76 117-207 76-157 (317)
179 3dr5_A Putative O-methyltransf 91.5 0.18 6.1E-06 48.6 5.2 71 117-202 57-137 (221)
180 4htf_A S-adenosylmethionine-de 91.5 0.21 7.3E-06 49.7 5.9 71 117-203 69-145 (285)
181 3s1s_A Restriction endonucleas 91.5 2.2 7.4E-05 48.8 14.5 165 117-297 322-516 (878)
182 3b3j_A Histone-arginine methyl 91.5 0.22 7.5E-06 54.1 6.3 69 117-203 159-233 (480)
183 1g6q_1 HnRNP arginine N-methyl 91.4 0.28 9.6E-06 50.3 6.8 69 118-203 40-114 (328)
184 3uwp_A Histone-lysine N-methyl 91.4 0.11 3.9E-06 54.9 3.8 103 116-248 173-292 (438)
185 2b2c_A Spermidine synthase; be 91.4 0.38 1.3E-05 49.1 7.7 148 118-298 110-269 (314)
186 3i9f_A Putative type 11 methyl 91.4 0.19 6.4E-06 45.6 4.9 68 117-204 18-85 (170)
187 2ar0_A M.ecoki, type I restric 91.3 1 3.5E-05 49.6 11.6 146 117-282 170-347 (541)
188 3q7e_A Protein arginine N-meth 91.3 0.31 1.1E-05 50.4 7.1 70 117-203 67-142 (349)
189 2yvl_A TRMI protein, hypotheti 91.3 0.31 1.1E-05 47.1 6.7 42 117-160 92-133 (248)
190 2pjd_A Ribosomal RNA small sub 91.2 0.18 6.2E-06 52.1 5.1 71 118-205 198-272 (343)
191 3g5t_A Trans-aconitate 3-methy 91.2 0.2 6.9E-06 50.3 5.3 78 116-203 36-122 (299)
192 1pjz_A Thiopurine S-methyltran 91.1 0.18 6.3E-06 47.7 4.8 42 117-160 23-64 (203)
193 3l8d_A Methyltransferase; stru 91.1 0.3 1E-05 46.9 6.4 69 117-202 54-124 (242)
194 3ou2_A SAM-dependent methyltra 91.1 0.28 9.5E-06 46.3 6.0 67 118-202 48-115 (218)
195 2kw5_A SLR1183 protein; struct 91.1 0.18 6.2E-06 47.2 4.6 66 119-201 32-101 (202)
196 3g2m_A PCZA361.24; SAM-depende 90.8 0.23 7.8E-06 49.9 5.4 42 119-162 85-126 (299)
197 1yub_A Ermam, rRNA methyltrans 90.7 0.021 7.2E-07 56.1 -2.5 71 117-204 30-103 (245)
198 3f4k_A Putative methyltransfer 90.5 0.29 1E-05 47.6 5.6 72 117-205 47-125 (257)
199 1jg1_A PIMT;, protein-L-isoasp 90.4 0.24 8.4E-06 47.8 5.0 73 117-205 92-169 (235)
200 2zig_A TTHA0409, putative modi 90.4 0.24 8.1E-06 50.1 5.0 41 118-160 237-277 (297)
201 3dou_A Ribosomal RNA large sub 90.4 0.14 4.8E-06 48.2 3.0 48 117-172 26-73 (191)
202 3v97_A Ribosomal RNA large sub 90.1 0.35 1.2E-05 55.1 6.6 101 117-239 191-340 (703)
203 3c3p_A Methyltransferase; NP_9 90.1 0.36 1.2E-05 45.6 5.8 69 118-203 58-135 (210)
204 2i62_A Nicotinamide N-methyltr 90.0 0.9 3.1E-05 44.1 8.8 46 116-162 56-101 (265)
205 3mgg_A Methyltransferase; NYSG 90.0 0.36 1.2E-05 47.6 5.9 74 116-204 37-115 (276)
206 1xxl_A YCGJ protein; structura 89.9 0.47 1.6E-05 45.8 6.6 70 116-203 21-96 (239)
207 2pbf_A Protein-L-isoaspartate 89.9 0.24 8.3E-06 47.4 4.4 78 117-205 81-173 (227)
208 1nt2_A Fibrillarin-like PRE-rR 89.9 2.1 7.1E-05 40.6 11.0 146 117-297 58-209 (210)
209 1qyr_A KSGA, high level kasuga 89.8 0.12 4.2E-06 51.0 2.2 53 118-172 23-78 (252)
210 2yxe_A Protein-L-isoaspartate 89.8 0.25 8.7E-06 46.7 4.4 75 117-206 78-158 (215)
211 3ujc_A Phosphoethanolamine N-m 89.7 0.48 1.6E-05 46.1 6.5 71 116-203 55-129 (266)
212 2yqz_A Hypothetical protein TT 89.7 0.45 1.6E-05 46.2 6.3 69 117-203 40-113 (263)
213 3hp7_A Hemolysin, putative; st 89.4 1.1 3.7E-05 45.1 8.9 45 117-162 86-130 (291)
214 1jsx_A Glucose-inhibited divis 89.4 0.38 1.3E-05 45.1 5.3 42 118-160 67-109 (207)
215 1ej0_A FTSJ; methyltransferase 89.4 0.18 6E-06 45.6 2.8 78 117-209 23-103 (180)
216 3khk_A Type I restriction-modi 89.4 3.6 0.00012 45.2 13.8 149 118-283 246-432 (544)
217 3thr_A Glycine N-methyltransfe 89.0 0.35 1.2E-05 48.2 4.9 42 117-160 58-99 (293)
218 3ocj_A Putative exported prote 88.9 0.36 1.2E-05 48.6 5.0 70 117-203 119-196 (305)
219 3dh0_A SAM dependent methyltra 88.8 0.24 8E-06 47.0 3.4 129 117-275 38-178 (219)
220 3lkd_A Type I restriction-modi 88.8 4.2 0.00014 44.6 13.8 151 116-283 221-394 (542)
221 2avn_A Ubiquinone/menaquinone 88.7 0.85 2.9E-05 44.6 7.5 69 117-203 55-123 (260)
222 1r18_A Protein-L-isoaspartate( 88.6 0.37 1.3E-05 46.2 4.6 74 117-205 85-174 (227)
223 3ckk_A TRNA (guanine-N(7)-)-me 88.6 0.55 1.9E-05 45.6 5.9 80 116-207 46-136 (235)
224 3vc1_A Geranyl diphosphate 2-C 88.5 0.6 2E-05 47.2 6.3 43 116-160 117-160 (312)
225 3dlc_A Putative S-adenosyl-L-m 88.4 0.57 1.9E-05 43.9 5.8 69 119-204 46-121 (219)
226 3gu3_A Methyltransferase; alph 88.1 0.43 1.5E-05 47.5 4.9 70 116-203 22-98 (284)
227 1g60_A Adenine-specific methyl 88.0 0.45 1.5E-05 47.0 4.9 42 118-161 214-255 (260)
228 1sui_A Caffeoyl-COA O-methyltr 88.0 0.82 2.8E-05 44.7 6.8 76 118-203 81-165 (247)
229 3ege_A Putative methyltransfer 88.0 0.71 2.4E-05 45.2 6.4 98 117-246 35-132 (261)
230 4df3_A Fibrillarin-like rRNA/T 87.9 1.7 5.8E-05 42.3 8.8 146 116-296 77-230 (233)
231 3ggd_A SAM-dependent methyltra 87.8 0.42 1.4E-05 46.2 4.5 56 116-173 56-113 (245)
232 1vl5_A Unknown conserved prote 87.6 0.84 2.9E-05 44.5 6.6 69 117-203 38-112 (260)
233 3bgv_A MRNA CAP guanine-N7 met 87.6 0.43 1.5E-05 48.2 4.6 43 117-160 35-77 (313)
234 1nkv_A Hypothetical protein YJ 87.3 0.8 2.7E-05 44.3 6.2 42 117-160 37-79 (256)
235 3cc8_A Putative methyltransfer 87.1 0.69 2.4E-05 43.7 5.6 71 116-203 32-102 (230)
236 3r3h_A O-methyltransferase, SA 87.1 0.25 8.5E-06 48.3 2.4 75 118-203 62-145 (242)
237 3c3y_A Pfomt, O-methyltransfer 86.4 0.97 3.3E-05 43.7 6.2 76 118-203 72-156 (237)
238 3cbg_A O-methyltransferase; cy 86.4 1.2 3.9E-05 43.0 6.7 77 118-203 74-157 (232)
239 4hg2_A Methyltransferase type 86.1 0.21 7.4E-06 49.4 1.3 66 118-201 41-106 (257)
240 1p91_A Ribosomal RNA large sub 86.1 0.74 2.5E-05 45.1 5.3 69 116-201 85-155 (269)
241 3kr9_A SAM-dependent methyltra 85.4 0.72 2.5E-05 44.6 4.6 43 118-160 17-59 (225)
242 3gnl_A Uncharacterized protein 84.9 0.78 2.7E-05 45.0 4.6 43 118-160 23-65 (244)
243 4gek_A TRNA (CMO5U34)-methyltr 84.7 0.98 3.4E-05 44.6 5.4 42 117-160 71-116 (261)
244 2vdw_A Vaccinia virus capping 84.0 0.75 2.6E-05 46.5 4.3 43 117-160 49-91 (302)
245 2fk8_A Methoxy mycolic acid sy 83.9 1.4 4.9E-05 44.3 6.4 42 117-160 91-133 (318)
246 2o57_A Putative sarcosine dime 83.9 0.9 3.1E-05 45.2 4.8 43 116-160 82-125 (297)
247 1wg8_A Predicted S-adenosylmet 83.8 1.8 6.1E-05 43.3 6.7 74 118-204 24-99 (285)
248 3hem_A Cyclopropane-fatty-acyl 83.3 1.3 4.4E-05 44.3 5.6 43 117-161 73-116 (302)
249 2plw_A Ribosomal RNA methyltra 83.1 1 3.4E-05 41.9 4.4 48 117-171 23-73 (201)
250 3htx_A HEN1; HEN1, small RNA m 82.6 0.9 3.1E-05 52.1 4.5 43 116-158 721-764 (950)
251 1kpg_A CFA synthase;, cyclopro 82.6 1.5 5E-05 43.4 5.7 42 117-160 65-107 (287)
252 2oxt_A Nucleoside-2'-O-methylt 82.1 0.19 6.6E-06 50.0 -1.1 32 117-151 75-106 (265)
253 3frh_A 16S rRNA methylase; met 81.8 1.9 6.7E-05 42.1 6.0 42 116-160 105-146 (253)
254 2p8j_A S-adenosylmethionine-de 81.7 1.4 4.8E-05 41.0 4.9 70 117-203 24-98 (209)
255 3opn_A Putative hemolysin; str 81.6 0.83 2.8E-05 44.3 3.3 45 117-162 38-82 (232)
256 2wa2_A Non-structural protein 81.3 0.27 9.3E-06 49.2 -0.3 32 117-151 83-114 (276)
257 3fzg_A 16S rRNA methylase; met 81.1 1.5 5.1E-05 41.4 4.7 44 117-160 50-93 (200)
258 1boo_A Protein (N-4 cytosine-s 80.8 2.5 8.5E-05 43.1 6.7 45 118-164 254-298 (323)
259 3lcv_B Sisomicin-gentamicin re 80.6 0.68 2.3E-05 45.9 2.2 44 117-160 133-176 (281)
260 2zfu_A Nucleomethylin, cerebra 80.4 11 0.00039 34.9 11.0 124 117-300 68-193 (215)
261 4fsd_A Arsenic methyltransfera 79.4 1.8 6.1E-05 45.2 5.2 79 116-203 83-175 (383)
262 3bus_A REBM, methyltransferase 78.4 4.2 0.00014 39.5 7.4 42 117-160 62-104 (273)
263 3mq2_A 16S rRNA methyltransfer 78.4 0.93 3.2E-05 42.8 2.5 40 117-156 28-67 (218)
264 2cmg_A Spermidine synthase; tr 78.2 1.1 3.8E-05 44.3 3.0 134 118-298 74-216 (262)
265 2xyq_A Putative 2'-O-methyl tr 77.6 20 0.00069 35.7 12.2 118 117-271 64-190 (290)
266 1vlm_A SAM-dependent methyltra 76.6 1.4 4.7E-05 41.8 3.0 63 117-202 48-110 (219)
267 2hnk_A SAM-dependent O-methylt 75.2 3 0.0001 40.0 5.1 58 117-175 61-126 (239)
268 4auk_A Ribosomal RNA large sub 73.2 13 0.00044 38.6 9.5 142 116-298 211-355 (375)
269 3fpf_A Mtnas, putative unchara 73.1 3.9 0.00013 41.2 5.5 43 116-160 122-166 (298)
270 3ufb_A Type I restriction-modi 71.5 4 0.00014 44.6 5.6 76 118-204 219-312 (530)
271 3bkx_A SAM-dependent methyltra 70.9 4.8 0.00016 39.2 5.5 44 117-160 44-94 (275)
272 3g07_A 7SK snRNA methylphospha 68.9 4.8 0.00016 40.0 5.1 45 117-162 47-92 (292)
273 1u2z_A Histone-lysine N-methyl 67.6 5.2 0.00018 42.5 5.2 40 116-156 242-282 (433)
274 2p41_A Type II methyltransfera 64.5 1.2 4.1E-05 45.1 -0.5 29 117-148 83-111 (305)
275 3ua3_A Protein arginine N-meth 64.3 3.8 0.00013 46.1 3.4 78 116-203 409-504 (745)
276 2r3s_A Uncharacterized protein 64.0 8.5 0.00029 38.7 5.9 42 116-160 165-208 (335)
277 1i4w_A Mitochondrial replicati 63.1 6.6 0.00023 40.5 4.8 56 117-173 59-117 (353)
278 2a14_A Indolethylamine N-methy 62.5 2.6 8.7E-05 41.3 1.5 44 116-160 55-98 (263)
279 2bm8_A Cephalosporin hydroxyla 61.3 1.8 6E-05 41.9 0.1 54 118-171 83-140 (236)
280 2nyu_A Putative ribosomal RNA 60.7 5.2 0.00018 36.6 3.3 50 117-172 23-82 (196)
281 3orh_A Guanidinoacetate N-meth 60.2 6.4 0.00022 37.8 3.9 71 117-201 61-135 (236)
282 1eg2_A Modification methylase 60.2 7.5 0.00026 39.4 4.6 42 118-161 244-288 (319)
283 4gqb_A Protein arginine N-meth 59.7 2.7 9.1E-05 47.0 1.2 69 116-200 357-434 (637)
284 1qzz_A RDMB, aclacinomycin-10- 57.3 9.5 0.00032 39.1 4.9 44 116-160 182-225 (374)
285 2k4m_A TR8_protein, UPF0146 pr 57.2 7.9 0.00027 34.7 3.6 36 117-154 36-73 (153)
286 1tw3_A COMT, carminomycin 4-O- 57.1 9.5 0.00032 38.9 4.8 44 116-160 183-226 (360)
287 3p2e_A 16S rRNA methylase; met 56.1 8 0.00027 36.9 3.8 36 118-153 26-61 (225)
288 2dpm_A M.dpnii 1, protein (ade 50.3 11 0.00037 37.6 3.8 37 119-159 38-74 (284)
289 2ip2_A Probable phenazine-spec 48.8 18 0.00063 36.2 5.3 40 118-160 169-210 (334)
290 3c6k_A Spermine synthase; sper 48.3 2.5E+02 0.0085 29.0 15.2 156 118-298 207-378 (381)
291 1x19_A CRTF-related protein; m 46.9 33 0.0011 34.8 7.0 44 116-160 190-233 (359)
292 3sso_A Methyltransferase; macr 43.9 7 0.00024 41.1 1.2 52 116-173 216-276 (419)
293 3dp7_A SAM-dependent methyltra 43.8 35 0.0012 34.8 6.6 45 117-162 180-224 (363)
294 2g1p_A DNA adenine methylase; 43.6 12 0.00041 37.1 2.8 38 118-159 29-66 (278)
295 1af7_A Chemotaxis receptor met 40.9 21 0.00073 35.2 4.2 43 116-160 105-157 (274)
296 3o4f_A Spermidine synthase; am 40.4 2.6E+02 0.009 27.6 12.2 148 118-298 85-245 (294)
297 2g72_A Phenylethanolamine N-me 39.5 13 0.00043 36.6 2.3 44 117-161 72-115 (289)
298 4e2x_A TCAB9; kijanose, tetron 36.9 25 0.00085 36.6 4.2 42 116-159 107-148 (416)
299 4fb5_A Probable oxidoreductase 36.2 48 0.0016 33.7 6.3 70 114-203 22-103 (393)
300 3gwz_A MMCR; methyltransferase 34.3 65 0.0022 32.8 6.9 129 116-275 202-353 (369)
301 1yf3_A DNA adenine methylase; 33.9 12 0.00042 36.6 1.2 38 119-161 27-64 (259)
302 3tka_A Ribosomal RNA small sub 33.6 35 0.0012 34.8 4.4 79 118-206 59-140 (347)
303 2qe6_A Uncharacterized protein 33.5 30 0.001 33.8 4.0 52 118-171 79-138 (274)
304 3mcz_A O-methyltransferase; ad 33.5 33 0.0011 34.6 4.4 43 117-160 180-222 (352)
305 2lci_A Protein OR36; structura 29.5 1.1E+02 0.0038 24.6 5.8 46 224-275 62-107 (134)
306 3u3x_A Oxidoreductase; structu 28.4 1.4E+02 0.0047 30.3 8.1 70 116-203 25-97 (361)
307 3i53_A O-methyltransferase; CO 28.4 83 0.0028 31.3 6.4 128 117-275 170-318 (332)
308 3oj0_A Glutr, glutamyl-tRNA re 27.7 1.1E+02 0.0039 26.1 6.4 37 123-161 25-65 (144)
309 2p2s_A Putative oxidoreductase 26.9 1.2E+02 0.0039 30.3 7.2 69 117-203 4-75 (336)
310 4had_A Probable oxidoreductase 26.4 93 0.0032 31.2 6.4 68 116-203 22-95 (350)
311 4h3v_A Oxidoreductase domain p 25.4 66 0.0022 32.6 5.0 70 115-203 4-84 (390)
312 4gqa_A NAD binding oxidoreduct 24.5 73 0.0025 32.9 5.2 68 116-203 25-105 (412)
313 3gcz_A Polyprotein; flavivirus 23.6 39 0.0013 33.5 2.6 34 117-151 91-125 (282)
314 3evf_A RNA-directed RNA polyme 23.2 35 0.0012 33.7 2.2 31 118-149 76-107 (277)
315 3fwz_A Inner membrane protein 21.8 1.9E+02 0.0064 24.5 6.6 64 123-203 11-80 (140)
No 1
>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*
Probab=100.00 E-value=1.3e-107 Score=949.16 Aligned_cols=549 Identities=42% Similarity=0.767 Sum_probs=464.6
Q ss_pred CEEEEEEEeeccCCCCCCcc--ccCCCeEEecCceeeeccccccceEEEEEeCCCC-ChhHhhhcCCCCCCeEEEEEEEe
Q psy12304 1 MKAHVQWLVRPNDTILGDKI--QFDNSTLFLTNACESIDLSVIKKTVCVDFVTNDS-SEEEILDNEHEEKDETIYTEYYR 77 (620)
Q Consensus 1 ~~~~v~wfyRped~~~~~~~--~~d~~eLf~Sd~~~~v~~~~I~gkC~V~~~~~~~-~i~~~~~~~~~~pd~Fy~~~~y~ 77 (620)
++|+|+||||||||..+... .+|.||||||++.+++|+++|.|||.|++..+.. .+++|...+ +|+|||...|+
T Consensus 416 ~~v~v~~fyRPed~~~~~~~~~~~D~~elf~S~~~~~~~~~~i~GkC~V~~~~d~~~~~~~~~~~~---p~~fyf~~~Yd 492 (1002)
T 3swr_A 416 IKIRVNKFYRPENTHKSTPASYHADINLLYWSDEEAVVDFKAVQGRCTVEYGEDLPECVQVYSMGG---PNRFYFLEAYN 492 (1002)
T ss_dssp CEEEEEECBCGGGSTTCGGGGSSSCTTEEEECCCEEEEEGGGCCEEEEEEEGGGCSSCHHHHHHTS---SSEEEEEEEEE
T ss_pred EEEEEEEEECcccccccccccccCCcceEEEecceeccCHHHcceEEEEEEeccccccchhhccCC---CCeEEEEEEEe
Confidence 57999999999999754444 7899999999999999999999999999999884 667799886 79999999999
Q ss_pred cCCCcceecCCCCchhhhHHhhhcccCcCC------------CCCCCCCCCCcceecccccccHHHHHHHhcCCCccEEE
Q psy12304 78 KTKDKHFVQPNARPLELAYILKIIHSKEFL------------PKFPMPLDTPLKCLDLFSGCGGLMEGLCQAGVAKPCWS 145 (620)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a 145 (620)
...++|.++|.. +..+.++.+++++. ...+.....+++++|||||||||++||++||+.+++||
T Consensus 493 -~~~~~f~~~p~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iDLFaG~GGlslGl~~AG~~~vv~a 568 (1002)
T 3swr_A 493 -AKSKSFEDPPNH---ARSPGNKGKGKGKGKGKPKSQACEPSEPEIEIKLPKLRTLDVFSGCGGLSEGFHQAGISDTLWA 568 (1002)
T ss_dssp -TTTTEEECCCST---TSCC----------------------CCCCCCCCCCEEEEEESCTTSHHHHHHHHHTSEEEEEE
T ss_pred -CCCCeeecCccc---cccccccccccccccccccccccccccccccccCCCCeEEEeccCccHHHHHHHHCCCCceEEE
Confidence 888999987654 44544443332211 11134457899999999999999999999997579999
Q ss_pred EcCchhHHHHHHHhcCCCcccccchHHHHHHhhcccccc-cCcCCCCCCccceEEecCCCCccccccccchhhhcccccc
Q psy12304 146 VELERSEAASYDANFQECSVIQDDCNLVLKSLLKGHTQH-KGVSLPQKHEVDLIVAGPPCQGFSQLNRARELEKSKLKNG 224 (620)
Q Consensus 146 ~e~d~~a~~ty~~N~p~~~~~~~di~~~~~~~~~~~~~~-~~~~~p~~~~vD~i~gGpPCQ~fS~~~~~~~~~~~d~r~~ 224 (620)
+|+|+.|++||++|||++.++++||.+++..++.+++.+ ....+|..+++|||+||||||+||.+|+.+.+..+|.||.
T Consensus 569 vEid~~A~~ty~~N~p~~~~~~~DI~~l~~~~~~~di~~~~~~~lp~~~~vDll~GGpPCQ~FS~ag~~~~~~~~d~R~~ 648 (1002)
T 3swr_A 569 IEMWDPAAQAFRLNNPGSTVFTEDCNILLKLVMAGETTNSRGQRLPQKGDVEMLCGGPPCQGFSGMNRFNSRTYSKFKNS 648 (1002)
T ss_dssp ECSSHHHHHHHHHHCTTSEEECSCHHHHHHHHHHTCSBCTTCCBCCCTTTCSEEEECCCCTTCCSSSCCCHHHHHHHTTS
T ss_pred EECCHHHHHHHHHhCCCCccccccHHHHhhhccchhhhhhhhhhcccCCCeeEEEEcCCCcchhhhCCCCCCcccchhhH
Confidence 999999999999999999999999999887777777653 2345777789999999999999999998655566789999
Q ss_pred hHHHHHHHhhhcCCcEEEEccccccccccchhHHHHHHHHHHcCCCEEEEEEEecCCCCCcccccEEEEEEecCCCCCCC
Q psy12304 225 LVFTFLSFCDLFQPKYIILENVTGLVHFNKNEILQCIFHCLLKMNYQVTFDVLQSGNYGVAQSRNRVVILASKPGYKLPS 304 (620)
Q Consensus 225 L~~~~~~~i~~~~P~~~v~ENV~gl~~~~~~~~~~~i~~~l~~~GY~v~~~~l~A~~yGvPQ~R~R~fivg~~~~~~~p~ 304 (620)
|+.+|+++|+.++|++||||||+||++++++..++.+++.|.++||++.+.+|||++|||||+|+|+||||+++|..+|.
T Consensus 649 L~~~~~riv~~~rPk~~llENV~glls~~~~~~~~~i~~~L~~lGY~v~~~vLnA~dyGvPQ~R~R~fiva~r~g~~~p~ 728 (1002)
T 3swr_A 649 LVVSFLSYCDYYRPRFFLLENVRNFVSFKRSMVLKLTLRCLVRMGYQCTFGVLQAGQYGVAQTRRRAIILAAAPGEKLPL 728 (1002)
T ss_dssp HHHHHHHHHHHHCCSEEEEEEEGGGGTTGGGHHHHHHHHHHHHHTCEEEEEEEEGGGGTCSBCCEEEEEEEECTTSCCCC
T ss_pred HHHHHHHHHHHhCCCEEEEeccHHHhccCcchHHHHHHHHHHhcCCeEEEEEEEHHHCCCCccceEEEEEEEeCCCCCCC
Confidence 99999999999999999999999999998899999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccccc---cc-ccccc-ccccc--CCCCCCccccHHHHHhcCCCCCCCCCcc--ccCCCCCcHHHHHHhcCCCc
Q psy12304 305 FPQPLHAFSNQ---LF-TINGN-LVANK--TSHAPYRSITVRDAISDLPRVSQGANCY--LFHNPPKTHFQRMMKDGSRI 375 (620)
Q Consensus 305 ~P~pth~~~~~---l~-~~~~~-~~~~~--~~~~p~~~~tv~dai~dLp~~~~~~~~~--~y~~~p~~~~q~~~r~~~~~ 375 (620)
||.|||.+..+ |. .++++ +..+. ....|++++||+|||+|||.+.++.... .|...|.++||+.||++.
T Consensus 729 ~P~pth~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~vTV~DAIsDLP~i~~g~~~~~~~y~~~p~s~yq~~mR~~~-- 806 (1002)
T 3swr_A 729 FPEPLHVFAPRACQLSVVVDDKKFVSNITRLSSGPFRTITVRDTMSDLPEVRNGASALEISYNGEPQSWFQRQLRGAQ-- 806 (1002)
T ss_dssp CCCCCBCCCGGGCCCCEEETTEEECCSCCCSSCCSBCCCCHHHHHTTSCCCCTTCCCSEECCCSCCCSHHHHHHHTTC--
T ss_pred CCCccccccccccccccccccccccccccccccCCcCCcCHHHHhhhCCccccCccccccccCCCCccHHHHHhhccc--
Confidence 99999987543 33 33443 43332 2345667899999999999998887654 788889999999999762
Q ss_pred cchhhhhhhhhhhhhhhhcChHHHHHhhccCCCCCCCCCCCccccccCCCCCccccchhhhccccc----------cccc
Q psy12304 376 HDIHINLRELLQDHICKILSPLMEMRIRLIPSFPNADWRDLPNICVKLPRGQHSYTEKLKYNAKKK----------KSVC 445 (620)
Q Consensus 376 ~~~~~~~~~~~~~h~~~~~~~~~~~ri~~ip~~~g~~~~~l~~~~~~l~~g~~~~~~~~~~~~~~~----------~~~~ 445 (620)
+...+.+|++..+++.+.+|+++||..+|++|+|||+..+.+.+| .+.+.++|...++ .|+|
T Consensus 807 ------~~~~l~~H~~~~~s~~~~~Ri~~IP~~~Gg~wrdlP~~~~~l~~~--~~~~~l~~~~~~~~~g~~~~~~l~~~c 878 (1002)
T 3swr_A 807 ------YQPILRDHICKDMSALVAARMRHIPLAPGSDWRDLPNIEVRLSDG--TMARKLRYTHHDRKNGRSSSGALRGVC 878 (1002)
T ss_dssp ------SSCCEECCCCCCCCHHHHHHHHTSCCSTTCCGGGCCCCCEECTTS--CEEBCCCCCBCCTTTCCCTTCCCCBCS
T ss_pred ------ccccccCcccccCCHHHHHHHhcCCCCCCCChhhCchhhhccccc--ccccccccccccccccccccccccccc
Confidence 234578999999999999999999999999999999876666665 4444555544322 2445
Q ss_pred ccCC-CCCcccCCCCccccccccccccccCCcchhccccccccccccccCCcccccccccccccccCcccccccccccCC
Q psy12304 446 DCKS-SSSCTSKGQKNTIIPWSLVHTASRNNNWQGVLGRLAWDESFDMTGQKNTIIPWSLVHTASRNNNWQGVLGRLAWD 524 (620)
Q Consensus 446 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~y~Rl~~~ 524 (620)
.+.. |+.|.| ..++.++|.|||++|++.+++.|++.||||+||
T Consensus 879 ~~~~~Gk~~~p------------------------------------~~~~~~~l~p~~~~~~~~r~~~~~~~ygRL~wd 922 (1002)
T 3swr_A 879 SCVEAGKACDP------------------------------------AARQFNTLIPWCLPHTGNRHNHWAGLYGRLEWD 922 (1002)
T ss_dssp GGGSSSCCCCG------------------------------------GGCCCSBSSCTHHHHHGGGTGGGTTTTCBCCTT
T ss_pred ccccccccccc------------------------------------cccccccccccccccccccccccCccceeeccC
Confidence 5444 556655 456778999999999999999999999999999
Q ss_pred CCCccccccCCCCCCCCceeecCCceeccHHHHHHhcCCCCCcEEcccccchhhhcccCCChHHHHHHHHHHHHHHhc
Q psy12304 525 ESFDTIVTTPNPLNKQGKILHPEQDRVLTVREYARAQGFPDSYVFRGGICDMYKQIGNAVPPPLAKAIGYEIIKCIGN 602 (620)
Q Consensus 525 ~~~~Ti~t~~~~~~~~g~~iHp~~~R~LTvRE~ARlQgFPD~y~f~g~~~~~~rqIGNAVpp~la~aig~~l~~~l~~ 602 (620)
++++|++|.+.++++.|+++||.|+|.||||||||||||||+|+|.|+.+++|+||||||||+||+|||++|.++|..
T Consensus 923 ~p~~~~it~~~~~~~~g~~~Hp~~~R~lt~rE~arlQ~fPd~~~f~g~~~~~~~qiGNaVp~~~~~~i~~~i~~~l~~ 1000 (1002)
T 3swr_A 923 GFFSTTVTNPEPMGKQGRVLHPEQHRVVSVRECARSQGFPDTYRLFGNILDKHRQVGNAVPPPLAKAIGLEIKLCMLA 1000 (1002)
T ss_dssp SCBSSCCSSCCTTCTTCCCBCSSSSSBCCHHHHHHHTTCCTTCCCCSSHHHHHHHHHHSCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCeeEecCCCCCCCCcccCcccccCCCHHHHHHhCCCCcceEEcCChHHHheeeeccCCHHHHHHHHHHHHHHHhc
Confidence 999999999888888999999999999999999999999999999999999999999999999999999999999875
No 2
>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A*
Probab=100.00 E-value=1.5e-100 Score=907.93 Aligned_cols=559 Identities=41% Similarity=0.756 Sum_probs=449.6
Q ss_pred CEEEEEEEeeccCCCCCCcc--ccCCCeEEecCceeeeccccccceEEEEEeCCCCC-hhHhhhcCCCCCCeEEEEEEEe
Q psy12304 1 MKAHVQWLVRPNDTILGDKI--QFDNSTLFLTNACESIDLSVIKKTVCVDFVTNDSS-EEEILDNEHEEKDETIYTEYYR 77 (620)
Q Consensus 1 ~~~~v~wfyRped~~~~~~~--~~d~~eLf~Sd~~~~v~~~~I~gkC~V~~~~~~~~-i~~~~~~~~~~pd~Fy~~~~y~ 77 (620)
++|+|+||||||||+.+... .+|.||||||++.+++++++|.|||+|+++++..+ +++|...+ +++|||.+.|+
T Consensus 727 ~~vrV~wFyRPedt~~~~~~~~~~D~nELf~S~~~~~vp~~~I~GKC~V~~~~d~~~~i~~y~~~g---~d~Fy~~~~Yd 803 (1330)
T 3av4_A 727 IKLRLYKFYRPENTHRSYNGSYHTDINMLYWSDEEAVVNFSDVQGRCTVEYGEDLLESIQDYSQGG---PDRFYFLEAYN 803 (1330)
T ss_dssp CEEEEEEEECTTTSTTGGGTTTTSCTTBCEEEEEEEEEEGGGCCEEEEEEESTTCSSCHHHHHHTS---TTEEEESCEEE
T ss_pred eEEEEEEeeChhhcccccccccccCcceEEeeccceecCHHHcCceEEEEecccccccccccccCC---CCeEEEEEEec
Confidence 47999999999999876433 78999999999999999999999999999998744 67899987 89999999999
Q ss_pred cCCCcceecCCCCchhhhHHhhhccc--CcC----CC----C--CCCCCCCCcceecccccccHHHHHHHhcCCCccEEE
Q psy12304 78 KTKDKHFVQPNARPLELAYILKIIHS--KEF----LP----K--FPMPLDTPLKCLDLFSGCGGLMEGLCQAGVAKPCWS 145 (620)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~----~~----~--~~~~~~~~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a 145 (620)
...++|..+|.. +..+..+.+. +|+ .+ . .......+++++|||||||||++||++||+.+++||
T Consensus 804 -~~~k~~~~~P~~---~~~~~~~~~~k~~g~~~~~~~~~~~~~~~~~~~~~~l~viDLFsG~GGlslGfe~AG~~~vv~a 879 (1330)
T 3av4_A 804 -SKTKNFEDPPNH---ARSPGNKGKGKGKGKGKGKHQVSEPKEPEAAIKLPKLRTLDVFSGCGGLSEGFHQAGISETLWA 879 (1330)
T ss_dssp -TTTTEEECCCGG---GCC-----------------------------CCCCEEEEEETCTTSHHHHHHHHTTSEEEEEE
T ss_pred -ccCCeeccCchH---hhcccccccccccccccccccccccccchhhhccCCceEEecccCccHHHHHHHHCCCCceEEE
Confidence 778899865443 3333333211 222 00 0 011245789999999999999999999997579999
Q ss_pred EcCchhHHHHHHHhcCCCcccccchHHHHHHhhcccccc-cCcCCCCCCccceEEecCCCCccccccccchhhhcccccc
Q psy12304 146 VELERSEAASYDANFQECSVIQDDCNLVLKSLLKGHTQH-KGVSLPQKHEVDLIVAGPPCQGFSQLNRARELEKSKLKNG 224 (620)
Q Consensus 146 ~e~d~~a~~ty~~N~p~~~~~~~di~~~~~~~~~~~~~~-~~~~~p~~~~vD~i~gGpPCQ~fS~~~~~~~~~~~d~r~~ 224 (620)
+|+|+.|++||++|||++.++++||.+++..++.|++.. ....+|..+++|||+||||||+||.+|+.+.+..+|.|+.
T Consensus 880 vEid~~A~~ty~~N~p~~~~~~~DI~~l~~~~~~gdi~~~~~~~lp~~~~vDvl~GGpPCQ~FS~agr~~~~~~~d~R~~ 959 (1330)
T 3av4_A 880 IEMWDPAAQAFRLNNPGTTVFTEDCNVLLKLVMAGEVTNSLGQRLPQKGDVEMLCGGPPCQGFSGMNRFNSRTYSKFKNS 959 (1330)
T ss_dssp ECCSHHHHHHHHHHCTTSEEECSCHHHHHHHHTTTCSBCSSCCBCCCTTTCSEEEECCCCTTTCSSSCCCHHHHHHHHHS
T ss_pred EECCHHHHHHHHHhCCCCcEeeccHHHHhHhhhccchhhhhhhhccccCccceEEecCCCcccccccccccccccchhhH
Confidence 999999999999999999899999999988777666543 2345676789999999999999999998655566788999
Q ss_pred hHHHHHHHhhhcCCcEEEEccccccccccchhHHHHHHHHHHcCCCEEEEEEEecCCCCCcccccEEEEEEecCCCCCCC
Q psy12304 225 LVFTFLSFCDLFQPKYIILENVTGLVHFNKNEILQCIFHCLLKMNYQVTFDVLQSGNYGVAQSRNRVVILASKPGYKLPS 304 (620)
Q Consensus 225 L~~~~~~~i~~~~P~~~v~ENV~gl~~~~~~~~~~~i~~~l~~~GY~v~~~~l~A~~yGvPQ~R~R~fivg~~~~~~~p~ 304 (620)
|+.+|+++|+.++|++||||||+||++++++.+++.+++.|.++||++.+.+|||++|||||+|+|+||||++.+..+|.
T Consensus 960 L~~~~lriv~~~rPk~fv~ENV~glls~~~g~~~~~il~~L~~lGY~v~~~vLnA~dyGVPQ~R~Rvfivg~r~~~~~~~ 1039 (1330)
T 3av4_A 960 LVVSFLSYCDYYRPRFFLLENVRNFVSYRRSMVLKLTLRCLVRMGYQCTFGVLQAGQYGVAQTRRRAIILAAAPGEKLPL 1039 (1330)
T ss_dssp HHHHHHHHHHHHCCSEEEEEEEGGGGTTTTTHHHHHHHHHHHHHTCEEEEEEEEGGGGSCSBCCEEEEEEEECTTSCCCC
T ss_pred HHHHHHHHHHHhcCcEEEEeccHHHhccCccHHHHHHHHHHHhcCCeeeEEEecHHHcCCCccccEEEEEEecCCCcccC
Confidence 99999999999999999999999999998899999999999999999999999999999999999999999999988899
Q ss_pred CCCCCcccccc---cc-ccccc-ccccc--CCCCCCccccHHHHHhcCCCCCCCCCcc--ccCCCCCcHHHHHHhcCCCc
Q psy12304 305 FPQPLHAFSNQ---LF-TINGN-LVANK--TSHAPYRSITVRDAISDLPRVSQGANCY--LFHNPPKTHFQRMMKDGSRI 375 (620)
Q Consensus 305 ~P~pth~~~~~---l~-~~~~~-~~~~~--~~~~p~~~~tv~dai~dLp~~~~~~~~~--~y~~~p~~~~q~~~r~~~~~ 375 (620)
||.|||.+..+ +. .+++. |..+. ....|++.+||+|||+|||.+.++.... .|...|.++||+.+|+..
T Consensus 1040 fP~pth~~~~~~~~l~~~~~~~~~~~~i~~~~~~p~~~vTV~DAI~DLP~i~~g~~~~~~~y~~~p~s~~q~~iR~~~-- 1117 (1330)
T 3av4_A 1040 FPEPLHVFAPRACQLSVVVDDKKFVSNITRLSSGPFRTITVRDTMSDLPEIQNGASNSEIPYNGEPLSWFQRQLRGSH-- 1117 (1330)
T ss_dssp CCCCCBCCCGGGCCCCEEETTEEECCSCCCSSCCSBCCCCHHHHHTTSCCCCTTCCCSEEECCSCCCSHHHHHHHCSS--
T ss_pred CCCccccccccccccccccccccccccccccccCCcCCCcHHHHhhcCcccccCCcccccccCCCcccHHHHHhhccc--
Confidence 99999976432 22 22232 33322 1234456789999999999988775432 677778899999999752
Q ss_pred cchhhhhhhhhhhhhhhhcChHHHHHhhccCCCCCCCCCCCccccccCCCCCccccchhhhcccccc----------ccc
Q psy12304 376 HDIHINLRELLQDHICKILSPLMEMRIRLIPSFPNADWRDLPNICVKLPRGQHSYTEKLKYNAKKKK----------SVC 445 (620)
Q Consensus 376 ~~~~~~~~~~~~~h~~~~~~~~~~~ri~~ip~~~g~~~~~l~~~~~~l~~g~~~~~~~~~~~~~~~~----------~~~ 445 (620)
+...+.+|.+..+++.+.+|++.||..+|++|+|+|+..+.+.+| ...+.+.|..+.++ |++
T Consensus 1118 ------~~~~l~~H~~~~~s~~~~~Ri~~ip~~~G~~~~dlp~~~~~l~~g--~~~~~l~y~~~~~k~g~~~~~~lrg~~ 1189 (1330)
T 3av4_A 1118 ------YQPILRDHICKDMSPLVAARMRHIPLFPGSDWRDLPNIQVRLGDG--VIAHKLQYTFHDVKNGYSSTGALRGVC 1189 (1330)
T ss_dssp ------CCCEEECCCCCCCCHHHHHHHHHSCSSTTCCGGGCCCCCEECSSS--CEEBCCCCCBCCTTTCCCTTSCCCBSS
T ss_pred ------cccccccccccccCHHHHHHHHhccCCCCCCcccchhhhhhcccc--ccccccccccccccccccccccccccc
Confidence 223467899999999999999999999999999999876655554 22223333322111 111
Q ss_pred ccCCCCCcccCCCCccccccccccccccCCcchhccccccccccccccCCcccccccccccccccCcccccccccccCCC
Q psy12304 446 DCKSSSSCTSKGQKNTIIPWSLVHTASRNNNWQGVLGRLAWDESFDMTGQKNTIIPWSLVHTASRNNNWQGVLGRLAWDE 525 (620)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~y~Rl~~~~ 525 (620)
.+..|+.|.| ..++.++|.||++++++.+++.|++.|+||+|++
T Consensus 1190 ~~~~Gk~~~p------------------------------------~~r~~~tL~p~~~~~~g~~~~~~~~~ygRL~~d~ 1233 (1330)
T 3av4_A 1190 SCAEGKACDP------------------------------------ESRQFSTLIPWCLPHTGNRHNHWAGLYGRLEWDG 1233 (1330)
T ss_dssp GGGGTSCCCS------------------------------------SSCCCSBSSCTHHHHHGGGTGGGTTTTCBCCTTS
T ss_pred cccccccccc------------------------------------ccccccccccccccccccccccccccceecccCC
Confidence 1111222211 3356788999999998888999999999999999
Q ss_pred CCccccccCCCCCCCCceeecCCceeccHHHHHHhcCCCCCcEEcccccchhhhcccCCChHHHHHHHHHHHHHHhccCC
Q psy12304 526 SFDTIVTTPNPLNKQGKILHPEQDRVLTVREYARAQGFPDSYVFRGGICDMYKQIGNAVPPPLAKAIGYEIIKCIGNAVP 605 (620)
Q Consensus 526 ~~~Ti~t~~~~~~~~g~~iHp~~~R~LTvRE~ARlQgFPD~y~f~g~~~~~~rqIGNAVpp~la~aig~~l~~~l~~~~~ 605 (620)
+++|++|.+.++++.|+++||.|+|.||||||||||||||+|+|.|+.+++|+||||||||+||+|||++|+++|.....
T Consensus 1234 p~sttiT~~~~~~k~g~~iHP~q~R~LTVREaARLQsFPDdF~F~Gs~t~~yrQIGNAVPPlLAkAIA~~I~~~L~~~~~ 1313 (1330)
T 3av4_A 1234 FFSTTVTNPEPMGKQGRVLHPEQHRVVSVRECARSQGFPDSYRFFGNILDRHRQVGNAVPPPLAKAIGLEIKLCLLSSAR 1313 (1330)
T ss_dssp CBSSCCSSCCTTSSSCCCBCSSSSSBCCHHHHHHHTTCCTTCCCCSSHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCceEeCCcccCCCCcccCccccccCCHHHHHHhcCCCCCeEECCCHhhhhEEeEeCcCHHHHHHHHHHHHHHHHhhhh
Confidence 99999999888888899999999999999999999999999999999999999999999999999999999999976554
Q ss_pred Cchhhhh
Q psy12304 606 PPLAKAI 612 (620)
Q Consensus 606 ~~~~~~~ 612 (620)
.....++
T Consensus 1314 ~~~~~~~ 1320 (1330)
T 3av4_A 1314 ESASAAV 1320 (1330)
T ss_dssp HHHHHHT
T ss_pred hhhhhhc
Confidence 4433333
No 3
>4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A*
Probab=100.00 E-value=4e-94 Score=840.02 Aligned_cols=537 Identities=28% Similarity=0.427 Sum_probs=405.4
Q ss_pred EEEEEEEeeccCCCCCC-------ccccCCCeEEecCceeeeccccccceEEEEEeCCCCChhHhhhcCCCCCCeEEEEE
Q psy12304 2 KAHVQWLVRPNDTILGD-------KIQFDNSTLFLTNACESIDLSVIKKTVCVDFVTNDSSEEEILDNEHEEKDETIYTE 74 (620)
Q Consensus 2 ~~~v~wfyRped~~~~~-------~~~~d~~eLf~Sd~~~~v~~~~I~gkC~V~~~~~~~~i~~~~~~~~~~pd~Fy~~~ 74 (620)
||+||||||||||+++. .+++|+||||||+++++|++++|.|||+|.++++..+++.+.... .+++|||+|
T Consensus 91 ~~~~~~~~r~~d~~~~~~~~~~~~~~~~d~~~~~~s~~~~~~~~~~i~~k~~v~~~~~~~~~~~~~~~~--~~~~~~~~~ 168 (784)
T 4ft4_B 91 YFTCRWFFRAEDTVINSLVSISVDGHKHDPRRVFLSEEKNDNVLDCIISKVKIVHVDPNMDPKAKAQLI--ESCDLYYDM 168 (784)
T ss_dssp EEEEEEEEEGGGSTTGGGGGCCBTTBCCCTTBEEEEEEEEEEEGGGEEEECCEEECCTTSCHHHHHHHH--HHCSEEESE
T ss_pred EEEEEEeeChhhhcccccccccccccccccceEEEeCcEEEechHHeeeeEEEEeeCccccchhhhhcc--CCcceEecc
Confidence 79999999999998765 238899999999999999999999999999999876666543332 368999999
Q ss_pred EEecCCCcceecCCCCchhhhHHhhhcc---cCcCCC-CCCCCCCCCcceecccccccHHHHHHHhcC------CCccEE
Q psy12304 75 YYRKTKDKHFVQPNARPLELAYILKIIH---SKEFLP-KFPMPLDTPLKCLDLFSGCGGLMEGLCQAG------VAKPCW 144 (620)
Q Consensus 75 ~y~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~l~~~dLFsG~Gg~s~Gl~~aG------~~~~~~ 144 (620)
.|. ..+++|..++.... .....+.. ...... .......++|++|||||||||||+||++|| | +++|
T Consensus 169 ~y~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~k~ltvIDLFAG~GGls~Gfe~AG~~~~~~f-~vv~ 244 (784)
T 4ft4_B 169 SYS-VAYSTFANISSENG--QSGSDTASGISSDDVDLETSSSMPTRTATLLDLYSGCGGMSTGLCLGAALSGLKL-ETRW 244 (784)
T ss_dssp EEE-TGGGEEEEC-------------------------------CEEEEEEEETCTTSHHHHHHHHHHHHHTEEE-EEEE
T ss_pred ccC-ccccCccCCCcccc--cccccccccccccccccccccccCCCCCeEEEeCcCccHHHHHHHHhCcccCCce-eEEE
Confidence 998 77888887544311 11111111 111111 112234678999999999999999999998 6 8999
Q ss_pred EEcCchhHHHHHHHhcCCCcccccchHHHHHHhhccccc-----------------------------------------
Q psy12304 145 SVELERSEAASYDANFQECSVIQDDCNLVLKSLLKGHTQ----------------------------------------- 183 (620)
Q Consensus 145 a~e~d~~a~~ty~~N~p~~~~~~~di~~~~~~~~~~~~~----------------------------------------- 183 (620)
|+|+|+.|++||++|||++.++++||.+++.........
T Consensus 245 AvE~d~~A~~Ty~~Nhp~~~~~~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (784)
T 4ft4_B 245 AVDFNSFACQSLKYNHPQTEVRNEKADEFLALLKEWAVLCKKYVQDVDSNLASSEDQADEDSPLDKDEFVVEKLVGICYG 324 (784)
T ss_dssp EEESCHHHHHHHHHHCTTSEEEESCHHHHHHHHHHHHHHHHHTC-----------------------CCCEEEEEEEEES
T ss_pred EEeCCHHHHHHHHHHCCCCceecCcHHHhhhhhhhcccccccccccccccccccccccccccccccccchhhhhcccccc
Confidence 999999999999999999999999999876543221000
Q ss_pred --------------------------------------------ccCcCCCCCCccceEEecCCCCccccccccchh--h
Q psy12304 184 --------------------------------------------HKGVSLPQKHEVDLIVAGPPCQGFSQLNRAREL--E 217 (620)
Q Consensus 184 --------------------------------------------~~~~~~p~~~~vD~i~gGpPCQ~fS~~~~~~~~--~ 217 (620)
.....+|.+|+||||+||||||+||.+|+.++. .
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~i~~~~~~~~~~~~~~~~G~VDvl~GGpPCQ~FS~aG~~kg~~~~ 404 (784)
T 4ft4_B 325 GSDRENGIYFKVQWEGYGPEEDTWEPIDNLSDCPQKIREFVQEGHKRKILPLPGDVDVICGGPPCQGISGFNRYRNRDEP 404 (784)
T ss_dssp CSSSCSSEEEEEEETTCCTTSCEEEESGGGTTCHHHHHHHHHHHHHHTSSCCTTSCSEEEECCCCCSSSGGGGGSCTTST
T ss_pred cccccccccchhhhcccccccccccccccccccchhccccccccchhhccCCCCCeEEEEecCCCcchhhhhcccCcCcc
Confidence 001246778999999999999999999986543 3
Q ss_pred hcccccchHHHHHHHhhhcCCcEEEEccccccccccchhHHHHHHHHHHcCCCEEEEEEEecCCCCCcccccEEEEEEec
Q psy12304 218 KSKLKNGLVFTFLSFCDLFQPKYIILENVTGLVHFNKNEILQCIFHCLLKMNYQVTFDVLQSGNYGVAQSRNRVVILASK 297 (620)
Q Consensus 218 ~~d~r~~L~~~~~~~i~~~~P~~~v~ENV~gl~~~~~~~~~~~i~~~l~~~GY~v~~~~l~A~~yGvPQ~R~R~fivg~~ 297 (620)
.+|.||.||++|+++|+.+||++||||||+||++.+++..++.+++.|.++||++.+.+|||++|||||+|+|+||||.+
T Consensus 405 ~~D~R~~L~~~~~riv~~~rPk~fvlENV~glls~~~g~~~~~il~~l~~lGY~v~~~vLnA~dyGVPQ~R~Rvfivg~r 484 (784)
T 4ft4_B 405 LKDEKNKQMVTFMDIVAYLKPKYVLMENVVDILKFADGYLGKYALSCLVAMKYQARLGMMVAGCYGLPQFRMRVFLWGAL 484 (784)
T ss_dssp TTSTTCHHHHHHHHHHHHHCCSEEEEEEEGGGGTGGGGHHHHHHHHHHHHTTCEEEEEEEEGGGGTCSSCCEEEEEEEEC
T ss_pred ccCchhHHHHHHHHHHHHHCCCEEEEEecCCccccccchHHHHHHHHHHhCCCeeeeeecCHHHcCCCcccccceeeeec
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCccccccccc---cccccc--cccCCCCCCccccHHHHHhcCCCCCCCCCcc--ccCCCCCcHHHHHHh
Q psy12304 298 PGYKLPSFPQPLHAFSNQLFT---INGNLV--ANKTSHAPYRSITVRDAISDLPRVSQGANCY--LFHNPPKTHFQRMMK 370 (620)
Q Consensus 298 ~~~~~p~~P~pth~~~~~l~~---~~~~~~--~~~~~~~p~~~~tv~dai~dLp~~~~~~~~~--~y~~~p~~~~q~~~r 370 (620)
++..+|.+|.|||....+... ...... .........+.+|++|||+|||.+..+.... .|...|.+.|++.++
T Consensus 485 ~d~~~~~~P~pth~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~dai~dlp~~~~~~~~~~~~~~~~~~~~~~~~~r 564 (784)
T 4ft4_B 485 SSMVLPKYPLPTYDVVVRGGAPNAFSQCMVAYDETQKPSLKKALLLGDAISDLPKVQNHQPNDVMEYGGSPKTEFQRYIR 564 (784)
T ss_dssp TTSCCCCEECCSBCCCCCSCSCGGGTTCBCSCCTTCCCCCBCCCCHHHHHTTSCCCCSCCCCSEECCSSCCCSHHHHHHT
T ss_pred cCCCcccCCCcccccccccccccccccccccccccccccccccccHHHHhhcccccccCCCccccccCCCCccHHHHHHh
Confidence 999999999999986544210 000000 0111233446789999999999988776544 778889999999998
Q ss_pred cCCC-ccchhh-----hhhhhhhhhhhhhcChHHHHHhhccCCCCCCCCCCCccccccCCCCCccccchhhhcccccccc
Q psy12304 371 DGSR-IHDIHI-----NLRELLQDHICKILSPLMEMRIRLIPSFPNADWRDLPNICVKLPRGQHSYTEKLKYNAKKKKSV 444 (620)
Q Consensus 371 ~~~~-~~~~~~-----~~~~~~~~h~~~~~~~~~~~ri~~ip~~~g~~~~~l~~~~~~l~~g~~~~~~~~~~~~~~~~~~ 444 (620)
.... ...... .....+.+|.+..+++...+|+..+|...|++|++++......... ..+......
T Consensus 565 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~r~~~i~~~~g~~~~dl~~~~~~~~~~-------~~~~~~~~~-- 635 (784)
T 4ft4_B 565 LSRKDMLDWSFGEGAGPDEGKLLDHQPLRLNNDDYERVQQIPVKKGANFRDLKGVRVGANNI-------VEWDPEIER-- 635 (784)
T ss_dssp CCTTTTTCCTTCSSCCSSTTCEECCCCCCCCHHHHHHHHHSCSSTTCCGGGSTTEEECGGGC-------EEECTTSCC--
T ss_pred hcccccccccccccccccccccccccccccCHHHHHHHHhcccccCCccccccccccccccc-------ccccchhhh--
Confidence 6521 000000 1123467899999999999999999999999999988653211100 000000000
Q ss_pred cccCCCCCcccCCCCccccccccccccccCCcchhccccccccccccccCCcccccccccccccccCcccccccccccCC
Q psy12304 445 CDCKSSSSCTSKGQKNTIIPWSLVHTASRNNNWQGVLGRLAWDESFDMTGQKNTIIPWSLVHTASRNNNWQGVLGRLAWD 524 (620)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~y~Rl~~~ 524 (620)
.....+ ..+.|... .......+.+.|+||.|+
T Consensus 636 ~~~~~~----------------------------------------------~~~~~~~~--~~~~~~~~~~~y~rl~~d 667 (784)
T 4ft4_B 636 VKLSSG----------------------------------------------KPLVPDYA--MSFIKGKSLKPFGRLWWD 667 (784)
T ss_dssp CBCTTS----------------------------------------------SBSSCHHH--HHGGGGTCCCTTEECCTT
T ss_pred cccccC----------------------------------------------cccccccc--cccccCCcCccceeccCC
Confidence 000000 00111000 111223456789999999
Q ss_pred CCCccccccCCCCCCCCceeecCCceeccHHHHHHhcCCCCCcEEcccccchhhhcccCCChHHHHHHHHHHHHHHhcc
Q psy12304 525 ESFDTIVTTPNPLNKQGKILHPEQDRVLTVREYARAQGFPDSYVFRGGICDMYKQIGNAVPPPLAKAIGYEIIKCIGNA 603 (620)
Q Consensus 525 ~~~~Ti~t~~~~~~~~g~~iHp~~~R~LTvRE~ARlQgFPD~y~f~g~~~~~~rqIGNAVpp~la~aig~~l~~~l~~~ 603 (620)
++++||||.+.+. .+.++||.++|+||||||||||||||+|+|.|+.+++|+||||||||+||+|||++|+++|.+.
T Consensus 668 ~ps~TItt~~~~~--~~~~iHp~~~R~LTpRE~ARLQgFPD~y~f~Gs~~~~ykQIGNAVpp~lA~aIg~~I~~al~~~ 744 (784)
T 4ft4_B 668 ETVPTVVTRAEPH--NQVIIHPTQARVLTIRENARLQGFPDYYRLFGPIKEKYIQVGNAVAVPVARALGYCLGQAYLGE 744 (784)
T ss_dssp CCCSCCCSCCCSS--SSEEECSSSSSBCCHHHHHHHTTCCTTCCCCSCHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTC
T ss_pred CcccceeccccCC--CCeecCCCCCcCCcHHHHHHHCCCCCCCEeCCCHHHHHhhccCCCCHHHHHHHHHHHHHHHcCc
Confidence 9999999987654 4678999999999999999999999999999999999999999999999999999999999765
No 4
>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}
Probab=100.00 E-value=9.5e-78 Score=640.66 Aligned_cols=354 Identities=25% Similarity=0.368 Sum_probs=277.3
Q ss_pred CcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcCCCcccccchHHHHHHhhcccccccCcCCCCCCccc
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQECSVIQDDCNLVLKSLLKGHTQHKGVSLPQKHEVD 196 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p~~~~~~~di~~~~~~~~~~~~~~~~~~~p~~~~vD 196 (620)
+++++||||||||+++||+++|+ ++++|+|+|+.|++||++|||++.++++||.++..+.+.. .....+++|
T Consensus 2 ~~~vidLFsG~GGlslG~~~aG~-~~v~avE~d~~a~~t~~~N~~~~~~~~~DI~~~~~~~~~~-------~~~~~~~~D 73 (376)
T 3g7u_A 2 SLNVIDLFSGVGGLSLGAARAGF-DVKMAVEIDQHAINTHAINFPRSLHVQEDVSLLNAEIIKG-------FFKNDMPID 73 (376)
T ss_dssp CCEEEEETCTTSHHHHHHHHHTC-EEEEEECSCHHHHHHHHHHCTTSEEECCCGGGCCHHHHHH-------HHCSCCCCC
T ss_pred CCeEEEEccCcCHHHHHHHHCCC-cEEEEEeCCHHHHHHHHHhCCCCceEecChhhcCHHHHHh-------hcccCCCee
Confidence 58999999999999999999998 9999999999999999999999988899998763221110 001235899
Q ss_pred eEEecCCCCccccccccchhhhcccccchHHHHHHHhhhcCCcEEEEccccccccccchhHHHHHHHHHHcCCCEE-EEE
Q psy12304 197 LIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLSFCDLFQPKYIILENVTGLVHFNKNEILQCIFHCLLKMNYQV-TFD 275 (620)
Q Consensus 197 ~i~gGpPCQ~fS~~~~~~~~~~~d~r~~L~~~~~~~i~~~~P~~~v~ENV~gl~~~~~~~~~~~i~~~l~~~GY~v-~~~ 275 (620)
+|+||||||+||.+|+. ..+|+|+.|+.+|+++|++++|++|+||||+||++.+++.+++.++ .|.++||++ .+.
T Consensus 74 ~i~ggpPCQ~fS~ag~~---~~~d~r~~L~~~~~~~v~~~~P~~~v~ENV~gl~s~~~~~~~~~i~-~l~~~GY~v~~~~ 149 (376)
T 3g7u_A 74 GIIGGPPCQGFSSIGKG---NPDDSRNQLYMHFYRLVSELQPLFFLAENVPGIMQEKYSGIRNKAF-NLVSGDYDILDPI 149 (376)
T ss_dssp EEEECCCCCTTC----------CHHHHHHHHHHHHHHHHHCCSEEEEEECTTTTCGGGHHHHHHHH-HHHHTTEEECCCE
T ss_pred EEEecCCCCCcccccCC---CCCCchHHHHHHHHHHHHHhCCCEEEEecchHhhccCcHHHHHHHH-HHHcCCCccCcEE
Confidence 99999999999999973 5678999999999999999999999999999999988888999999 999999999 999
Q ss_pred EEecCCCCCcccccEEEEEEecCCCCCCCCCCCCccccccccccccccccccCCCCCCccccHHHHHhcCCCCCC-CCCc
Q psy12304 276 VLQSGNYGVAQSRNRVVILASKPGYKLPSFPQPLHAFSNQLFTINGNLVANKTSHAPYRSITVRDAISDLPRVSQ-GANC 354 (620)
Q Consensus 276 ~l~A~~yGvPQ~R~R~fivg~~~~~~~p~~P~pth~~~~~l~~~~~~~~~~~~~~~p~~~~tv~dai~dLp~~~~-~~~~ 354 (620)
+|||++|||||+|+|+||||.+++..+|.+ .|+|... ..+.+||+|||+|||.+.. +...
T Consensus 150 vl~a~dyGvPQ~R~R~~iig~r~~~~~~~~-~p~~~~~------------------~~~~~tv~dai~dlp~~~~~~~~~ 210 (376)
T 3g7u_A 150 KVKASDYGAPTIRTRYFFIGVKKSLKLDIS-DEVFMPK------------------MIDPVTVKDALYGLPDIIDANWQS 210 (376)
T ss_dssp EEEGGGGTCSBCCEEEEEEEEEGGGCCCCC-GGGTSCC------------------SCCCCCHHHHTTTCCSSCEEESSC
T ss_pred EEEHhhCCCCCCCcEEEEEEEeCCCCCCcc-ccccccc------------------cCCCCcHHHHHhcCCccccccccc
Confidence 999999999999999999999999877665 6776311 1246899999999998765 2211
Q ss_pred --c---ccCCCCCcHHHHHHhcCCCc-cchhh----hhhhhhhhhhhhhcChHHHHHhhccCCCCCCCCCCCccccccCC
Q psy12304 355 --Y---LFHNPPKTHFQRMMKDGSRI-HDIHI----NLRELLQDHICKILSPLMEMRIRLIPSFPNADWRDLPNICVKLP 424 (620)
Q Consensus 355 --~---~y~~~p~~~~q~~~r~~~~~-~~~~~----~~~~~~~~h~~~~~~~~~~~ri~~ip~~~g~~~~~l~~~~~~l~ 424 (620)
. .|...+.+.|++.||..... ..+.. .+...+.+|.+..+++...+|++.+|. |.+
T Consensus 211 ~~~~~~~~~~~~~~~y~~~~r~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~r~~~~~~--G~~------------ 276 (376)
T 3g7u_A 211 DSESWRTIKKDRKGGFYEKLWGQIPRNVGDTESIAKLKNNIISGCTGTLHSKIVQERYASLSF--GET------------ 276 (376)
T ss_dssp SSCCCEECCCCCCSHHHHHHHCCCCTTCSCHHHHHHHHTTEESCCEEECCCHHHHHHHHTCCT--TCB------------
T ss_pred ccccccccCccCccHHHHHhhcCcccccccccccccccccccccccccccCHHHHHHHHhCCC--CCC------------
Confidence 1 23334678999999864110 00000 012345577777788888888877661 110
Q ss_pred CCCccccchhhhcccccccccccCCCCCcccCCCCccccccccccccccCCcchhccccccccccccccCCccccccccc
Q psy12304 425 RGQHSYTEKLKYNAKKKKSVCDCKSSSSCTSKGQKNTIIPWSLVHTASRNNNWQGVLGRLAWDESFDMTGQKNTIIPWSL 504 (620)
Q Consensus 425 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~p~~~ 504 (620)
T Consensus 277 -------------------------------------------------------------------------------- 276 (376)
T 3g7u_A 277 -------------------------------------------------------------------------------- 276 (376)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccCcccccccccccCCCCCccccccCCCCC---CCCceeecCCceeccHHHHHHhcCCCCCcEEcccccchhhhcc
Q psy12304 505 VHTASRNNNWQGVLGRLAWDESFDTIVTTPNPLN---KQGKILHPEQDRVLTVREYARAQGFPDSYVFRGGICDMYKQIG 581 (620)
Q Consensus 505 ~~~~~~~~~~~~~y~Rl~~~~~~~Ti~t~~~~~~---~~g~~iHp~~~R~LTvRE~ARlQgFPD~y~f~g~~~~~~rqIG 581 (620)
.+.+.|+||+||++++||+|...+.. ..++++||+|+|.|||||+||||||||+|+|.|+.+++|+|||
T Consensus 277 --------~~~~~~~Rl~~d~ps~Ti~~~~~~~~g~~~~~r~~HP~~~R~lTvRE~ARlQsFPD~f~f~g~~~~~~~qIG 348 (376)
T 3g7u_A 277 --------DKISRSTRLDPNGFCPTLRAGTARDKGSFQAVRPIHPYHPRVITPREAARLQGFPDWFRFHVTKWHSFRQIG 348 (376)
T ss_dssp --------CTTTCCBBCCTTSCBCCC-------------CCCBCSSSSSBCCHHHHHHHHTCCTTCCCCSSHHHHHHHHH
T ss_pred --------ccCCceeecCcccCCCceecCcCCCCCcccCccccCCccCcCCCHHHHHHhCCCCcceEECCChHHhheeee
Confidence 12457999999999999999765321 1356799999999999999999999999999999999999999
Q ss_pred cCCChHHHHHHHHHHHHHHhcc
Q psy12304 582 NAVPPPLAKAIGYEIIKCIGNA 603 (620)
Q Consensus 582 NAVpp~la~aig~~l~~~l~~~ 603 (620)
|||||+||+|||++|+++|.+.
T Consensus 349 NAVPp~la~aia~~I~~~l~~~ 370 (376)
T 3g7u_A 349 NSVSPIVAEYILKGLYNLLNEG 370 (376)
T ss_dssp TSCCHHHHHHHHHHHHHHHTC-
T ss_pred cCCCHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999763
No 5
>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*
Probab=100.00 E-value=5.6e-68 Score=559.12 Aligned_cols=190 Identities=26% Similarity=0.450 Sum_probs=167.8
Q ss_pred cceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcCCCcccccchHHHHHHhhcccccccCcCCCCCCccce
Q psy12304 118 LKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQECSVIQDDCNLVLKSLLKGHTQHKGVSLPQKHEVDL 197 (620)
Q Consensus 118 l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p~~~~~~~di~~~~~~~~~~~~~~~~~~~p~~~~vD~ 197 (620)
|++||||||||||++||++||| ++++|+|+|+.|++||++|||+ .++.+||.++ ....+| ++|+
T Consensus 1 mkvidLFsG~GG~~~G~~~aG~-~~v~a~e~d~~a~~ty~~N~~~-~~~~~DI~~i-----------~~~~~~---~~D~ 64 (331)
T 3ubt_Y 1 MNLISLFSGAGGLDLGFQKAGF-RIICANEYDKSIWKTYESNHSA-KLIKGDISKI-----------SSDEFP---KCDG 64 (331)
T ss_dssp CEEEEESCTTCHHHHHHHHTTC-EEEEEEECCTTTHHHHHHHCCS-EEEESCGGGC-----------CGGGSC---CCSE
T ss_pred CeEEEeCcCccHHHHHHHHCCC-EEEEEEeCCHHHHHHHHHHCCC-CcccCChhhC-----------CHhhCC---cccE
Confidence 5899999999999999999998 9999999999999999999985 5677898765 233455 7999
Q ss_pred EEecCCCCccccccccchhhhcccccchHHHHHHHhhhcCCcEEEEccccccccccchhHHHHHHHHHHcCCCEEEEEEE
Q psy12304 198 IVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLSFCDLFQPKYIILENVTGLVHFNKNEILQCIFHCLLKMNYQVTFDVL 277 (620)
Q Consensus 198 i~gGpPCQ~fS~~~~~~~~~~~d~r~~L~~~~~~~i~~~~P~~~v~ENV~gl~~~~~~~~~~~i~~~l~~~GY~v~~~~l 277 (620)
|+||||||+||.+|+. ++.+|+|+.|+.+++++|++++|++|+||||+||++.+++..++.+++.|.++||++.+.+|
T Consensus 65 l~ggpPCQ~fS~ag~~--~g~~d~R~~L~~~~~r~i~~~~Pk~~~~ENV~gl~~~~~~~~~~~i~~~l~~~GY~v~~~vl 142 (331)
T 3ubt_Y 65 IIGGPPSQSWSEGGSL--RGIDDPRGKLFYEYIRILKQKKPIFFLAENVKGMMAQRHNKAVQEFIQEFDNAGYDVHIILL 142 (331)
T ss_dssp EECCCCGGGTEETTEE--CCTTCGGGHHHHHHHHHHHHHCCSEEEEEECCGGGGCTTSHHHHHHHHHHHHHTEEEEEEEE
T ss_pred EEecCCCCCcCCCCCc--cCCCCchhHHHHHHHHHHhccCCeEEEeeeecccccccccchhhhhhhhhccCCcEEEEEec
Confidence 9999999999999974 44678999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCcccccEEEEEEecCCCCCCCCCCCCccccccccccccccccccCCCCCCccccHHHHHhcCCC
Q psy12304 278 QSGNYGVAQSRNRVVILASKPGYKLPSFPQPLHAFSNQLFTINGNLVANKTSHAPYRSITVRDAISDLPR 347 (620)
Q Consensus 278 ~A~~yGvPQ~R~R~fivg~~~~~~~p~~P~pth~~~~~l~~~~~~~~~~~~~~~p~~~~tv~dai~dLp~ 347 (620)
||++|||||+|+|+||||.+++...+..|..+|. ...|+.|+|.||+.
T Consensus 143 na~~yGvPQ~R~Rvfivg~r~~~~~~~~~p~~~~----------------------~~~t~~d~i~~l~~ 190 (331)
T 3ubt_Y 143 NANDYGVAQDRKRVFYIGFRKELNINYLPPIPHL----------------------IKPTFKDVIWDLKD 190 (331)
T ss_dssp EGGGTTCSBCCEEEEEEEEEGGGCCCCCCCCCCS----------------------CCCCGGGTSGGGSS
T ss_pred ccccCCCCcccceEEEEEEcCCCCcCCCCCCCcC----------------------CCCcHHHHhhhccc
Confidence 9999999999999999999988765443333221 23588999999875
No 6
>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...
Probab=100.00 E-value=2.9e-66 Score=542.60 Aligned_cols=316 Identities=24% Similarity=0.343 Sum_probs=248.1
Q ss_pred CCCCcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcCCCcccccchHHHHHHhhcccccccCcCCCCCC
Q psy12304 114 LDTPLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQECSVIQDDCNLVLKSLLKGHTQHKGVSLPQKH 193 (620)
Q Consensus 114 ~~~~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p~~~~~~~di~~~~~~~~~~~~~~~~~~~p~~~ 193 (620)
.+.+++++|||||+||+++||+++|+ ++++|+|+|+.|++||++|||+.. ++||.++ ....+|
T Consensus 8 ~~~~~~~~dLFaG~Gg~~~g~~~aG~-~~v~~~e~d~~a~~t~~~N~~~~~--~~Di~~~-----------~~~~~~--- 70 (327)
T 2c7p_A 8 QLTGLRFIDLFAGLGGFRLALESCGA-ECVYSNEWDKYAQEVYEMNFGEKP--EGDITQV-----------NEKTIP--- 70 (327)
T ss_dssp TTTTCEEEEETCTTTHHHHHHHHTTC-EEEEEECCCHHHHHHHHHHHSCCC--BSCGGGS-----------CGGGSC---
T ss_pred ccCCCcEEEECCCcCHHHHHHHHCCC-eEEEEEeCCHHHHHHHHHHcCCCC--cCCHHHc-----------CHhhCC---
Confidence 35679999999999999999999998 999999999999999999999765 6888765 122344
Q ss_pred ccceEEecCCCCccccccccchhhhcccccchHHHHHHHhhhcCCcEEEEccccccccccchhHHHHHHHHHHcCCCEEE
Q psy12304 194 EVDLIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLSFCDLFQPKYIILENVTGLVHFNKNEILQCIFHCLLKMNYQVT 273 (620)
Q Consensus 194 ~vD~i~gGpPCQ~fS~~~~~~~~~~~d~r~~L~~~~~~~i~~~~P~~~v~ENV~gl~~~~~~~~~~~i~~~l~~~GY~v~ 273 (620)
++|+|+||||||+||.+|+.+ +.+|+|+.|+.+++++|++++|++|+||||+||++.+++..++.+++.|.++||++.
T Consensus 71 ~~D~l~~gpPCQ~fS~ag~~~--g~~d~r~~L~~~~~r~i~~~~P~~~~~ENV~gl~~~~~~~~~~~i~~~l~~~GY~v~ 148 (327)
T 2c7p_A 71 DHDILCAGFPCQAFSISGKQK--GFEDSRGTLFFDIARIVREKKPKVVFMENVKNFASHDNGNTLEVVKNTMNELDYSFH 148 (327)
T ss_dssp CCSEEEEECCCTTTCTTSCCC--GGGSTTSCHHHHHHHHHHHHCCSEEEEEEEGGGGTGGGGHHHHHHHHHHHHTTBCCE
T ss_pred CCCEEEECCCCCCcchhcccC--CCcchhhHHHHHHHHHHHhccCcEEEEeCcHHHHhccccHHHHHHHHHHHhCCCEEE
Confidence 699999999999999999743 456889999999999999999999999999999998888999999999999999999
Q ss_pred EEEEecCCCCCcccccEEEEEEecCCCC--CCCCCCCCccccccccccccccccccCCCCCCccccHHHHHhcCCCCCCC
Q psy12304 274 FDVLQSGNYGVAQSRNRVVILASKPGYK--LPSFPQPLHAFSNQLFTINGNLVANKTSHAPYRSITVRDAISDLPRVSQG 351 (620)
Q Consensus 274 ~~~l~A~~yGvPQ~R~R~fivg~~~~~~--~p~~P~pth~~~~~l~~~~~~~~~~~~~~~p~~~~tv~dai~dLp~~~~~ 351 (620)
+.+|||++||+||+|+|+||||.+.+.. .+.||.|+|. ..|++|+|+++|..
T Consensus 149 ~~vl~a~~~GvPQ~R~R~~iv~~~~~~~~~~~~fP~~~~~-----------------------~~tl~d~l~~~~~~--- 202 (327)
T 2c7p_A 149 AKVLNALDYGIPQKRERIYMICFRNDLNIQNFQFPKPFEL-----------------------NTFVKDLLLPDSEV--- 202 (327)
T ss_dssp EEEEEGGGGTCSBCCEEEEEEEEBGGGCCCCCCCCCCCCC-----------------------CCCGGGTCCCGGGT---
T ss_pred EEEEEHHHcCCCccceEEEEEEEeCCCCcccccCCCCcCC-----------------------CCcHHHHhcccCCc---
Confidence 9999999999999999999999998753 3567887762 35889999865410
Q ss_pred CCccccCCCCCcHHHHHHhcCCCccchhhhhhhhhhhhhhhhcChHHHHHhhccCCCCCCCCCCCccccccCCCCCcccc
Q psy12304 352 ANCYLFHNPPKTHFQRMMKDGSRIHDIHINLRELLQDHICKILSPLMEMRIRLIPSFPNADWRDLPNICVKLPRGQHSYT 431 (620)
Q Consensus 352 ~~~~~y~~~p~~~~q~~~r~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ri~~ip~~~g~~~~~l~~~~~~l~~g~~~~~ 431 (620)
..|...+ +...| .+... ........
T Consensus 203 ---~~~~~~~-----------------------------------------------~~~~~-~l~~~---~~~~~~~~- 227 (327)
T 2c7p_A 203 ---EHLVIDR-----------------------------------------------KDLVM-TNQEI---EQTTPKTV- 227 (327)
T ss_dssp ---GGGEECC-----------------------------------------------TTCEE-CSCCC---SSCCSSCC-
T ss_pred ---ccccccC-----------------------------------------------Cccee-Eeecc---ccCccchh-
Confidence 0010000 00000 00000 00000000
Q ss_pred chhhhcccccccccccCCCCCcccCCCCccccccccccccccCCcchhccccccccccccccCCcccccccccccccccC
Q psy12304 432 EKLKYNAKKKKSVCDCKSSSSCTSKGQKNTIIPWSLVHTASRNNNWQGVLGRLAWDESFDMTGQKNTIIPWSLVHTASRN 511 (620)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~p~~~~~~~~~~ 511 (620)
. .. +. .
T Consensus 228 -----------------------~--------------------------~~---------------~~---------~- 233 (327)
T 2c7p_A 228 -----------------------R--------------------------LG---------------IV---------G- 233 (327)
T ss_dssp -----------------------E--------------------------EE---------------ES---------T-
T ss_pred -----------------------h--------------------------hh---------------hc---------c-
Confidence 0 00 00 0
Q ss_pred cccccccccccCCCCCccccccCC-CCCCCCceeecCCceeccHHHHHHhcCCCCCcEEcccccchhhhcccCCChHHHH
Q psy12304 512 NNWQGVLGRLAWDESFDTIVTTPN-PLNKQGKILHPEQDRVLTVREYARAQGFPDSYVFRGGICDMYKQIGNAVPPPLAK 590 (620)
Q Consensus 512 ~~~~~~y~Rl~~~~~~~Ti~t~~~-~~~~~g~~iHp~~~R~LTvRE~ARlQgFPD~y~f~g~~~~~~rqIGNAVpp~la~ 590 (620)
+....|+|+.|+++++|++|... ++.+.|..+||.+.|.||+|||||||||||+|+|.|+.+++|+||||||||+||+
T Consensus 234 -~~~~~~~~~~~~~~~~Ti~~~~~~~~~~~~~~~~~~~~R~LT~rE~aRLQgFPd~f~f~gs~~~~ykqIGNAVp~~l~~ 312 (327)
T 2c7p_A 234 -KGGQGERIYSTRGIAITLSAYGGGIFAKTGGYLVNGKTRKLHPRECARVMGYPDSYKVHPSTSQAYKQFGNSVVINVLQ 312 (327)
T ss_dssp -TCCTTCEEEETTSCBCCCCSSCCSTTTTTCEEEETTEEEECCHHHHHHHTTCCTTSCCCSSHHHHHHHHHHCCCHHHHH
T ss_pred -CCccccccccCCCCcCceecCCCCccCCCCccCCCCCCcCCCHHHHHHHCCCCcCcEeCCCHHHHHhHccCCCCHHHHH
Confidence 00112567788999999998732 1334567899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccC
Q psy12304 591 AIGYEIIKCIGNAV 604 (620)
Q Consensus 591 aig~~l~~~l~~~~ 604 (620)
+||++|.++|.+.+
T Consensus 313 ~Ia~~i~~~l~~~~ 326 (327)
T 2c7p_A 313 YIAYNIGSSLNFKP 326 (327)
T ss_dssp HHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHhcCC
Confidence 99999999998643
No 7
>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}
Probab=100.00 E-value=4.7e-59 Score=486.91 Aligned_cols=176 Identities=19% Similarity=0.353 Sum_probs=156.1
Q ss_pred CCCcceecccccccHHHHHHHhcCC-CccE-EEEcCchhHHHHHHHhcCCCcccccchHHHHHHhhcccccccCcCCCCC
Q psy12304 115 DTPLKCLDLFSGCGGLMEGLCQAGV-AKPC-WSVELERSEAASYDANFQECSVIQDDCNLVLKSLLKGHTQHKGVSLPQK 192 (620)
Q Consensus 115 ~~~l~~~dLFsG~Gg~s~Gl~~aG~-~~~~-~a~e~d~~a~~ty~~N~p~~~~~~~di~~~~~~~~~~~~~~~~~~~p~~ 192 (620)
.++++++|||||+||+++||++||+ .+++ +|+|+|+.|++||++|||+. ++++||.++..+ .+|.
T Consensus 8 ~~~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~~-~~~~DI~~~~~~-----------~i~~- 74 (327)
T 3qv2_A 8 QKQVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKEE-VQVKNLDSISIK-----------QIES- 74 (327)
T ss_dssp CCCEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCCC-CBCCCTTTCCHH-----------HHHH-
T ss_pred CCCCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCCC-cccCChhhcCHH-----------Hhcc-
Confidence 4679999999999999999999996 5899 99999999999999999987 678898765221 2221
Q ss_pred CccceEEecCCCCcc--ccccccchhhhcccccchHHHHHH-Hhhhc--CCcEEEEccccccccccchhHHHHHHHHHHc
Q psy12304 193 HEVDLIVAGPPCQGF--SQLNRARELEKSKLKNGLVFTFLS-FCDLF--QPKYIILENVTGLVHFNKNEILQCIFHCLLK 267 (620)
Q Consensus 193 ~~vD~i~gGpPCQ~f--S~~~~~~~~~~~d~r~~L~~~~~~-~i~~~--~P~~~v~ENV~gl~~~~~~~~~~~i~~~l~~ 267 (620)
.++|+|+||||||+| |.+|+.+ +.+|.|+.|+.++++ +|+.+ +|++|+||||+||++ +..++.+++.|.+
T Consensus 75 ~~~Dil~ggpPCQ~fs~S~ag~~~--~~~d~r~~L~~~~~r~~i~~~~~~P~~~~lENV~gl~~---~~~~~~i~~~l~~ 149 (327)
T 3qv2_A 75 LNCNTWFMSPPCQPYNNSIMSKHK--DINDPRAKSVLHLYRDILPYLINKPKHIFIENVPLFKE---SLVFKEIYNILIK 149 (327)
T ss_dssp TCCCEEEECCCCTTCSHHHHTTTC--TTTCGGGHHHHHHHHTTGGGCSSCCSEEEEEECGGGGG---SHHHHHHHHHHHH
T ss_pred CCCCEEEecCCccCcccccCCCCC--CCccccchhHHHHHHHHHHHhccCCCEEEEEchhhhcC---hHHHHHHHHHHHh
Confidence 268999999999999 9999743 457899999999999 99999 999999999999986 3679999999999
Q ss_pred CCCEEEEEEEecCCCCCcccccEEEEEEecCCCCCCCCCCCCcc
Q psy12304 268 MNYQVTFDVLQSGNYGVAQSRNRVVILASKPGYKLPSFPQPLHA 311 (620)
Q Consensus 268 ~GY~v~~~~l~A~~yGvPQ~R~R~fivg~~~~~~~p~~P~pth~ 311 (620)
+||++.+.+|||++||+||+|+|+||||.+.+ +.||.|+|.
T Consensus 150 ~GY~v~~~vl~a~~yGvPQ~R~R~fivg~r~~---f~fP~~~~~ 190 (327)
T 3qv2_A 150 NQYYIKDIICSPIDIGIPNSRTRYYVMARLTP---FKNEIQLHQ 190 (327)
T ss_dssp TTCEEEEEEECGGGGTCSBCCCEEEEEEESSC---CCSCCCCCC
T ss_pred CCCEEEEEEEeHHHcCCCccceEEEEEEEeCC---CCCCCcccc
Confidence 99999999999999999999999999999987 678888873
No 8
>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26
Probab=100.00 E-value=1.1e-59 Score=496.95 Aligned_cols=177 Identities=23% Similarity=0.438 Sum_probs=140.7
Q ss_pred CcceecccccccHHHHHHHhcCC-CccEEEEcCchhHHHHHHHhcCCCcccccchHHHHHHhhcccccccCcCCCCCCcc
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQAGV-AKPCWSVELERSEAASYDANFQECSVIQDDCNLVLKSLLKGHTQHKGVSLPQKHEV 195 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~aG~-~~~~~a~e~d~~a~~ty~~N~p~~~~~~~di~~~~~~~~~~~~~~~~~~~p~~~~v 195 (620)
+++++|||||+||+++||+++|+ .++++++|+|+.|++||++||+++.++++||.++... .++. .++
T Consensus 2 ~~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~~~~~~~~Di~~~~~~-----------~~~~-~~~ 69 (343)
T 1g55_A 2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGITLE-----------EFDR-LSF 69 (343)
T ss_dssp CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTTSCEECSCGGGCCHH-----------HHHH-HCC
T ss_pred CCeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhccccccccCCHHHccHh-----------HcCc-CCc
Confidence 57999999999999999999994 2799999999999999999999988888999765321 1111 168
Q ss_pred ceEEecCCCCccccccccchhhhcccccchHHHHHHHhhhcC--CcEEEEccccccccccchhHHHHHHHHHHcCCCEEE
Q psy12304 196 DLIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLSFCDLFQ--PKYIILENVTGLVHFNKNEILQCIFHCLLKMNYQVT 273 (620)
Q Consensus 196 D~i~gGpPCQ~fS~~~~~~~~~~~d~r~~L~~~~~~~i~~~~--P~~~v~ENV~gl~~~~~~~~~~~i~~~l~~~GY~v~ 273 (620)
|+|+||||||+||.+|+. ++.+|.|+.|+.+++++|++++ |++|+||||+||++ +..++.+++.|.++||++.
T Consensus 70 D~l~~gpPCq~fS~ag~~--~g~~d~r~~l~~~~~~~i~~~~~~P~~~~~ENV~~l~~---~~~~~~i~~~l~~~GY~v~ 144 (343)
T 1g55_A 70 DMILMSPPCQPFTRIGRQ--GDMTDSRTNSFLHILDILPRLQKLPKYILLENVKGFEV---SSTRDLLIQTIENCGFQYQ 144 (343)
T ss_dssp SEEEECCC--------------------CHHHHHHHHGGGCSSCCSEEEEEEETTGGG---SHHHHHHHHHHHHTTEEEE
T ss_pred CEEEEcCCCcchhhcCCc--CCccCccchHHHHHHHHHHHhcCCCCEEEEeCCccccC---HHHHHHHHHHHHHCCCeeE
Confidence 999999999999999974 3457889999999999999999 99999999999985 3678999999999999999
Q ss_pred EEEEecCCCCCcccccEEEEEEecCCCCCCCCCCCCcc
Q psy12304 274 FDVLQSGNYGVAQSRNRVVILASKPGYKLPSFPQPLHA 311 (620)
Q Consensus 274 ~~~l~A~~yGvPQ~R~R~fivg~~~~~~~p~~P~pth~ 311 (620)
+.+|||++||+||+|+|+||||.+.+.. ..+|.|+|.
T Consensus 145 ~~vl~a~~~GvPQ~R~R~~iv~~~~~~~-~~~p~~~~~ 181 (343)
T 1g55_A 145 EFLLSPTSLGIPNSRLRYFLIAKLQSEP-LPFQAPGQV 181 (343)
T ss_dssp EEEECGGGGTCSCCCCEEEEEEEESSSC-CTTCCTTCE
T ss_pred EEEEEHHHCCCCCcccEEEEEEEeCCCC-CCCCCCcch
Confidence 9999999999999999999999998754 468888764
No 9
>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}
Probab=100.00 E-value=3.1e-57 Score=474.66 Aligned_cols=169 Identities=22% Similarity=0.383 Sum_probs=150.7
Q ss_pred CCcceecccccccHHHHHHHhcCC-CccEEEEcCchhHHHHHHHhcCCCcccccchHHHHHHhhcccccccCcCCCCCCc
Q psy12304 116 TPLKCLDLFSGCGGLMEGLCQAGV-AKPCWSVELERSEAASYDANFQECSVIQDDCNLVLKSLLKGHTQHKGVSLPQKHE 194 (620)
Q Consensus 116 ~~l~~~dLFsG~Gg~s~Gl~~aG~-~~~~~a~e~d~~a~~ty~~N~p~~~~~~~di~~~~~~~~~~~~~~~~~~~p~~~~ 194 (620)
++++++|||||+||+++||++||+ .++++|+|+|+.|++||++|||++.++++||.++..+ .++. .+
T Consensus 2 m~~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~~~~~~~~DI~~~~~~-----------~~~~-~~ 69 (333)
T 4h0n_A 2 MSHKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFPETNLLNRNIQQLTPQ-----------VIKK-WN 69 (333)
T ss_dssp -CEEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTTSCEECCCGGGCCHH-----------HHHH-TT
T ss_pred CCCEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhCCCCceeccccccCCHH-----------Hhcc-CC
Confidence 478999999999999999999997 5899999999999999999999988888999866321 2221 26
Q ss_pred cceEEecCCCCccccccccchhhhcccccchHHHHHHHhhhcC-CcEEEEccccccccccchhHHHHHHHHHHcCCCEEE
Q psy12304 195 VDLIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLSFCDLFQ-PKYIILENVTGLVHFNKNEILQCIFHCLLKMNYQVT 273 (620)
Q Consensus 195 vD~i~gGpPCQ~fS~~~~~~~~~~~d~r~~L~~~~~~~i~~~~-P~~~v~ENV~gl~~~~~~~~~~~i~~~l~~~GY~v~ 273 (620)
+|+|+||||||+||.+|+.+ +.+|+|+.|+.+++++|+.++ |++|+||||+||++. ..++.+++.|.++||++.
T Consensus 70 ~D~l~ggpPCQ~fS~ag~~~--~~~d~r~~L~~~~~r~i~~~~~P~~~vlENV~gl~~~---~~~~~i~~~l~~~GY~v~ 144 (333)
T 4h0n_A 70 VDTILMSPPCQPFTRNGKYL--DDNDPRTNSFLYLIGILDQLDNVDYILMENVKGFENS---TVRNLFIDKLKECNFIYQ 144 (333)
T ss_dssp CCEEEECCCCCCSEETTEEC--CTTCTTSCCHHHHHHHGGGCTTCCEEEEEECTTGGGS---HHHHHHHHHHHHTTEEEE
T ss_pred CCEEEecCCCcchhhhhhcc--CCcCcccccHHHHHHHHHHhcCCCEEEEecchhhhhh---hHHHHHHHHHHhCCCeEE
Confidence 89999999999999999743 457899999999999999997 999999999999864 468899999999999999
Q ss_pred EEEEecCCCCCcccccEEEEEEecCCCC
Q psy12304 274 FDVLQSGNYGVAQSRNRVVILASKPGYK 301 (620)
Q Consensus 274 ~~~l~A~~yGvPQ~R~R~fivg~~~~~~ 301 (620)
+.+|||++||+||+|+|+||||.+.+..
T Consensus 145 ~~vl~a~~~GvPQ~R~R~fiva~r~~~~ 172 (333)
T 4h0n_A 145 EFLLCPSTVGVPNSRLRYYCTARRNNLT 172 (333)
T ss_dssp EEEECTTTTTCSCCCCEEEEEEEETTSC
T ss_pred EEEecHHHcCCCccceEEEEEEEeCCCC
Confidence 9999999999999999999999998854
No 10
>4dkj_A Cytosine-specific methyltransferase; CG-specificity, DNA intercalation, CPG sequence, cytosine C5 methylation; HET: DNA C37 5CM SAH; 2.15A {Mycoplasma penetrans}
Probab=100.00 E-value=3.5e-57 Score=483.79 Aligned_cols=193 Identities=19% Similarity=0.237 Sum_probs=156.7
Q ss_pred CCCCcceecccccccHHHHHHHhcCC-Ccc----EEEEcCchhHHHHHHHhcCCCccc---------------------c
Q psy12304 114 LDTPLKCLDLFSGCGGLMEGLCQAGV-AKP----CWSVELERSEAASYDANFQECSVI---------------------Q 167 (620)
Q Consensus 114 ~~~~l~~~dLFsG~Gg~s~Gl~~aG~-~~~----~~a~e~d~~a~~ty~~N~p~~~~~---------------------~ 167 (620)
.+++++++|||||+||+++||+++|+ .++ ++|+|+|+.|++||++||++.... .
T Consensus 7 ~~~~lrvldLFsGiGG~~~Gl~~aG~~~~~~~~~v~avEid~~A~~ty~~n~~~~~~~~~~~~~~~l~~~s~d~k~~~~~ 86 (403)
T 4dkj_A 7 KIKVIKVFEAFAGIGSQFKALKNIARSKNWEIQHSGMVEWFVDAIVSYVAIHSKNFNPKIERLDRDILSISNDSKMPISE 86 (403)
T ss_dssp CCEEEEEEEETCTTCHHHHHHHHHHHHHTEEEEEEEEECCBHHHHHHHHHHHCSSCCCCCBCCCTTCCCCBSSSSSCCCH
T ss_pred ccccceEEEEecCcCHHHHHHHHhCCccccceeeEEEEecCHHHHHHHHHHcCCCcccchhhhhhhhhhccccccccccc
Confidence 35679999999999999999999994 366 999999999999999999874210 0
Q ss_pred cchHHH----HHHh---------hcccccc-cCcCCCCCCccceEEecCCCCccccccccchhh-hcccccchHHHHHHH
Q psy12304 168 DDCNLV----LKSL---------LKGHTQH-KGVSLPQKHEVDLIVAGPPCQGFSQLNRARELE-KSKLKNGLVFTFLSF 232 (620)
Q Consensus 168 ~di~~~----~~~~---------~~~~~~~-~~~~~p~~~~vD~i~gGpPCQ~fS~~~~~~~~~-~~d~r~~L~~~~~~~ 232 (620)
.++..+ ++.+ ..+|+.+ ....+| +.+|+|+||||||+||.+|+.++.. ..+.|+.|+++++++
T Consensus 87 ~~i~~l~~~~l~~i~~~~~~~~~~~~DI~~i~~~~ip--~~vDll~ggpPCQ~fS~ag~~~g~~d~~~~r~~L~~~~~ri 164 (403)
T 4dkj_A 87 YGIKKINNTIKASYLNYAKKHFNNLFDIKKVNKDNFP--KNIDIFTYSFPCQDLSVQGLQKGIDKELNTRSGLLWEIERI 164 (403)
T ss_dssp HHHHHHTTBHHHHHHHHHHHHSCBCCCGGGCCTTTSC--SSCSEEEECCCCTTTCTTSCCCCCCGGGCCSGGGHHHHHHH
T ss_pred cccccccHHHHHHHHhhcccCCCcccchhhcCHhhCC--CCCcEEEEeCCCCCHHHhCCCCCCCccccccchhHHHHHHH
Confidence 111111 0111 1244432 234555 4689999999999999999754322 124899999999999
Q ss_pred hhh--------cCCcEEEEccccccccccchhHHHHHHHHHHcCCCEEEEEEEecCCCCCcccccEEEEEEecCCCCCCC
Q psy12304 233 CDL--------FQPKYIILENVTGLVHFNKNEILQCIFHCLLKMNYQVTFDVLQSGNYGVAQSRNRVVILASKPGYKLPS 304 (620)
Q Consensus 233 i~~--------~~P~~~v~ENV~gl~~~~~~~~~~~i~~~l~~~GY~v~~~~l~A~~yGvPQ~R~R~fivg~~~~~~~p~ 304 (620)
|++ .+|++|+||||+||++.+++..++.+++.|.++||++.+.+|||++||+||+|+|+||||.+.+ +.
T Consensus 165 i~~~~~k~~~~~~Pk~~l~ENV~gl~~~~~~~~~~~i~~~l~~~GY~v~~~vl~a~~~GvPQ~R~R~fiva~r~~---f~ 241 (403)
T 4dkj_A 165 LEEIKNSFSKEEMPKYLLMENVKNLLSHKNKKNYNTWLKQLEKFGYKSKTYLLNSKNFDNCQNRERVFCLSIRDD---YL 241 (403)
T ss_dssp HHHHHHHSCGGGSCSEEEEEEEGGGGSHHHHHHHHHHHHHHHHTTEEEEEEEEEGGGTTCSBCCEEEEEEEEEHH---HH
T ss_pred HHHhhhhhccccCCCEEEEecchhhhhhccchHHHHHHHHHHhCCCeEEEEEecHHHcCCCccceEEEEEEEcCC---CC
Confidence 998 8999999999999999888889999999999999999999999999999999999999999987 67
Q ss_pred CCCCCcc
Q psy12304 305 FPQPLHA 311 (620)
Q Consensus 305 ~P~pth~ 311 (620)
||.|+|.
T Consensus 242 fP~~~~~ 248 (403)
T 4dkj_A 242 EKTGFKF 248 (403)
T ss_dssp HHHCCCC
T ss_pred CCCcccc
Confidence 8888874
No 11
>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A
Probab=100.00 E-value=5.8e-55 Score=475.62 Aligned_cols=182 Identities=24% Similarity=0.440 Sum_probs=147.7
Q ss_pred CCCcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhc---CCCcccccchHHHHHHhhcc----cccc-cC
Q psy12304 115 DTPLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANF---QECSVIQDDCNLVLKSLLKG----HTQH-KG 186 (620)
Q Consensus 115 ~~~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~---p~~~~~~~di~~~~~~~~~~----~~~~-~~ 186 (620)
..+++++||||||||+++||+++|+ ++++|+|+|+.|++||++|| |++.++++||.++......+ +... ..
T Consensus 86 ~~~~~viDLFaG~GGlslG~~~aG~-~~v~avE~d~~A~~ty~~N~~~~p~~~~~~~DI~~i~~~~~~~~~~~~~~~~i~ 164 (482)
T 3me5_A 86 HYAFRFIDLFAGIGGIRRGFESIGG-QCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIRDITLSHQEGVSDEAAAEHIR 164 (482)
T ss_dssp CCSEEEEEESCTTSHHHHHHHTTTE-EEEEEECCCHHHHHHHHHHSCCCTTTCEEESCTHHHHCTTCTTSCHHHHHHHHH
T ss_pred CccceEEEecCCccHHHHHHHHCCC-EEEEEEeCCHHHHHHHHHhcccCCCcceeccchhhhhhccccccchhhHHhhhh
Confidence 4689999999999999999999998 89999999999999999999 77778889998874110000 0000 00
Q ss_pred cCCCCCCccceEEecCCCCccccccccchh------hh-cccccchHHHHHHHhhhcCCcEEEEccccccccccchhHHH
Q psy12304 187 VSLPQKHEVDLIVAGPPCQGFSQLNRAREL------EK-SKLKNGLVFTFLSFCDLFQPKYIILENVTGLVHFNKNEILQ 259 (620)
Q Consensus 187 ~~~p~~~~vD~i~gGpPCQ~fS~~~~~~~~------~~-~d~r~~L~~~~~~~i~~~~P~~~v~ENV~gl~~~~~~~~~~ 259 (620)
..+| ++|||+||||||+||.+|+.++. +. .|.|+.||++++++|+..+|++||||||+||++.+++..|+
T Consensus 165 ~~~~---~~Dvl~gGpPCQ~FS~AG~~k~~~~g~~~G~~~D~R~~Lf~e~~riI~~~rPk~fvlENV~gl~s~~~g~~f~ 241 (482)
T 3me5_A 165 QHIP---EHDVLLAGFPCQPFSLAGVSKKNSLGRAHGFACDTQGTLFFDVVRIIDARRPAMFVLENVKNLKSHDKGKTFR 241 (482)
T ss_dssp HHSC---CCSEEEEECCCCCC------------------CTTTTSHHHHHHHHHHHHCCSEEEEEEETTTTTGGGGHHHH
T ss_pred hcCC---CCCEEEecCCCcchhhhCcccccccccccccccCccccHHHHHHHHHHHcCCcEEEEeCcHHHhcccCCcHHH
Confidence 1233 79999999999999999964421 11 37899999999999999999999999999999988899999
Q ss_pred HHHHHHHcCCCEEE---------EEEEecCCCCCcccccEEEEEEecCCCC
Q psy12304 260 CIFHCLLKMNYQVT---------FDVLQSGNYGVAQSRNRVVILASKPGYK 301 (620)
Q Consensus 260 ~i~~~l~~~GY~v~---------~~~l~A~~yGvPQ~R~R~fivg~~~~~~ 301 (620)
.+++.|.++||.+. +.+|||++| |||+|+|+||||.+.+..
T Consensus 242 ~i~~~L~~lGY~v~~~~~~g~~~~~vlnA~~~-vPQ~R~R~fivg~r~~~~ 291 (482)
T 3me5_A 242 IIMQTLDELGYDVADAEDNGPDDPKIIDGKHF-LPQHRERIVLVGFRRDLN 291 (482)
T ss_dssp HHHHHHHHTTEEETTTTCCSTTCTTEEEGGGT-SSBCCEEEEEEEEEGGGC
T ss_pred HHHHHHhcCCcEEEeccccCcccceeeecccc-CCccceEEEEEEEecCcc
Confidence 99999999999996 679999999 999999999999998764
No 12
>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}
Probab=100.00 E-value=1.6e-55 Score=453.49 Aligned_cols=162 Identities=21% Similarity=0.263 Sum_probs=134.0
Q ss_pred CCCCCcceecccccccHHHHHHHhcCCCcc--EEEEcCchhHHHHHHHhcCCCcccccchHHHHHHhhcccccccCcCCC
Q psy12304 113 PLDTPLKCLDLFSGCGGLMEGLCQAGVAKP--CWSVELERSEAASYDANFQECSVIQDDCNLVLKSLLKGHTQHKGVSLP 190 (620)
Q Consensus 113 ~~~~~l~~~dLFsG~Gg~s~Gl~~aG~~~~--~~a~e~d~~a~~ty~~N~p~~~~~~~di~~~~~~~~~~~~~~~~~~~p 190 (620)
....+++++|||||+||+++||+++|+ ++ ++|+|+|+.|++||++|||+..++.+||.++..+ .++
T Consensus 12 ~~~~~~~vidLFaG~GG~~~g~~~aG~-~~~~v~a~E~d~~a~~ty~~N~~~~~~~~~DI~~i~~~-----------~i~ 79 (295)
T 2qrv_A 12 EKRKPIRVLSLFDGIATGLLVLKDLGI-QVDRYIASEVCEDSITVGMVRHQGKIMYVGDVRSVTQK-----------HIQ 79 (295)
T ss_dssp CCCCCEEEEEETCTTTHHHHHHHHTTB-CEEEEEEECCCHHHHHHHHHHTTTCEEEECCGGGCCHH-----------HHH
T ss_pred ccCCCCEEEEeCcCccHHHHHHHHCCC-ccceEEEEECCHHHHHHHHHhCCCCceeCCChHHccHH-----------Hhc
Confidence 346789999999999999999999998 67 7999999999999999999887888999876322 222
Q ss_pred CCCccceEEecCCCCccccccccchhhhcccccchHHHHHHHhhhcCCc-------EEEEccccccccccchhHHHHHHH
Q psy12304 191 QKHEVDLIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLSFCDLFQPK-------YIILENVTGLVHFNKNEILQCIFH 263 (620)
Q Consensus 191 ~~~~vD~i~gGpPCQ~fS~~~~~~~~~~~d~r~~L~~~~~~~i~~~~P~-------~~v~ENV~gl~~~~~~~~~~~i~~ 263 (620)
..+++|+|+||||||+||.+|+. +.+.+|.|+.|+++|+++|++++|+ +|+||||+||++.+++ . +.+
T Consensus 80 ~~~~~Dll~ggpPCQ~fS~ag~~-r~g~~d~r~~L~~~~~rii~~~~P~~~~~~P~~~l~ENV~gl~~~~~~-~---~~~ 154 (295)
T 2qrv_A 80 EWGPFDLVIGGSPCNDLSIVNPA-RKGLYEGTGRLFFEFYRLLHDARPKEGDDRPFFWLFENVVAMGVSDKR-D---ISR 154 (295)
T ss_dssp HTCCCSEEEECCCCGGGBTTCTT-CCTTTSTTTTHHHHHHHHHHHHSCCTTCCCCCEEEEEEESSBCHHHHH-H---HHH
T ss_pred ccCCcCEEEecCCCccccccCcc-ccccccccchhHHHHHHHHHHhCcccccCCccEEEEEcCcchhhcCcc-H---HHH
Confidence 23579999999999999999842 2345788999999999999999999 9999999999976433 2 333
Q ss_pred HHHcCCCEEEEEEEecCCCCCcccccEEEEEEecC
Q psy12304 264 CLLKMNYQVTFDVLQSGNYGVAQSRNRVVILASKP 298 (620)
Q Consensus 264 ~l~~~GY~v~~~~l~A~~yGvPQ~R~R~fivg~~~ 298 (620)
.|+ . .+.+|||++|| ||+|+|+|| |..+
T Consensus 155 ~l~-~----~~~vl~a~~~~-PQ~R~R~~i-~~~~ 182 (295)
T 2qrv_A 155 FLE-S----NPVMIDAKEVS-AAHRARYFW-GNLP 182 (295)
T ss_dssp HHT-S----CCCCEEGGGTS-SBCCEEEEE-ECCT
T ss_pred HHh-c----CcEEeecceEC-CccCcEEEE-EEec
Confidence 333 2 35789999996 999999998 7654
No 13
>2qrv_B DNA (cytosine-5)-methyltransferase 3-like; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}
Probab=99.95 E-value=1.1e-29 Score=247.15 Aligned_cols=138 Identities=16% Similarity=0.156 Sum_probs=99.3
Q ss_pred CCCCcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcCCCcccccchHHHHHHhhcccccccCcCCCCCC
Q psy12304 114 LDTPLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQECSVIQDDCNLVLKSLLKGHTQHKGVSLPQKH 193 (620)
Q Consensus 114 ~~~~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p~~~~~~~di~~~~~~~~~~~~~~~~~~~p~~~ 193 (620)
..++++++|||||+|| ||+++|| ++ +.||++..++.+||.++..+ .++..+
T Consensus 30 ~~~~~~vidLFaGig~---Gl~~aGf-~~--------------~~N~~~~~~~~~DI~~i~~~-----------~i~~~~ 80 (230)
T 2qrv_B 30 RRQPVRVLSLFEDIKK---ELTSLGF-LE--------------SGSDPGQLKHVVDVTDTVRK-----------DVEEWG 80 (230)
T ss_dssp GCCCCCEEEESSCCTT---TTTTTTS-CC-------------------CCEEEESCCTTCCHH-----------HHHHTC
T ss_pred hcCCceEEEeccChhH---HHHHCCC-ch--------------hhcCCCCcEecCChhhCCHh-----------HhcccC
Confidence 3467899999999998 8999998 64 47998776677898766321 222234
Q ss_pred ccceEEecCCCCccccccccchhhhcccccchHHHHHHHhhhcCCc-------EEEEccccccccccchhHHHHHHHHHH
Q psy12304 194 EVDLIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLSFCDLFQPK-------YIILENVTGLVHFNKNEILQCIFHCLL 266 (620)
Q Consensus 194 ~vD~i~gGpPCQ~fS~~~~~~~~~~~d~r~~L~~~~~~~i~~~~P~-------~~v~ENV~gl~~~~~~~~~~~i~~~l~ 266 (620)
++|+|+||||||+||.+|. |+.||.+|+|+|++++|+ +|+||||+||++.++ ..+.+.|
T Consensus 81 ~~DlliGG~PCQ~FS~ag~---------rg~Lf~ef~Riv~~~rPk~~~~~P~~fv~ENV~gL~~~~~----~~i~~~l- 146 (230)
T 2qrv_B 81 PFDLVYGATPPLGHTCDRP---------PSWYLFQFHRLLQYARPKPGSPRPFFWMFVDNLVLNKEDL----DVASRFL- 146 (230)
T ss_dssp CCSEEEEECCCTTTSSCSC---------THHHHHHHHHHHHHHCCCSSCCSCCEEEEEECSCSCHHHH----HHHHHHH-
T ss_pred CCCEEEECCCCCcccccCC---------CchHHHHHHHHHHHHCcCcccCCCcEEEEeccHHhhhccH----HHHHHHH-
Confidence 7999999999999999872 678999999999999999 899999999986532 2333333
Q ss_pred cCCCEEEEEEEecCCCCCcccccEEEEEEecCCC
Q psy12304 267 KMNYQVTFDVLQSGNYGVAQSRNRVVILASKPGY 300 (620)
Q Consensus 267 ~~GY~v~~~~l~A~~yGvPQ~R~R~fivg~~~~~ 300 (620)
+.+ +.+|||++||+||+| |+| ||..++.
T Consensus 147 ~~~----~~vLnA~dfgvpQrR-r~f-~g~~~~~ 174 (230)
T 2qrv_B 147 EME----PVTIPDVHGGSLQNA-VRV-WSNIPAI 174 (230)
T ss_dssp TSC----CEECCCCCSCC-----CEE-EECSTTS
T ss_pred cCC----cEEEEcccCCcCccc-EEE-EeecCCC
Confidence 343 568999999999999 444 4777664
No 14
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=99.95 E-value=2.4e-29 Score=261.04 Aligned_cols=138 Identities=15% Similarity=0.156 Sum_probs=108.5
Q ss_pred CCCCcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcCCCcccccchHHHHHHhhcccccccCcCCCCCC
Q psy12304 114 LDTPLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQECSVIQDDCNLVLKSLLKGHTQHKGVSLPQKH 193 (620)
Q Consensus 114 ~~~~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p~~~~~~~di~~~~~~~~~~~~~~~~~~~p~~~ 193 (620)
.+++++++|||||+|| ||+++|| ++ ++|||+..++.+||.++... .++..+
T Consensus 186 ~~~~ikvidLFaGiGg---Gl~~aGf-~v--------------~~N~~~~~~~~~DI~~i~~~-----------~i~~~~ 236 (386)
T 2pv0_B 186 RRQPVRVLSLFEDIKK---ELTSLGF-LE--------------SGSDPGQLKHVVDVTDTVRK-----------DVEEWG 236 (386)
T ss_dssp GCCCCCEEEESSCCHH---HHHHTTS-SC--------------SSCCSCSEEEESCCTTCCHH-----------HHHHSC
T ss_pred hhcCceeeEEeccCCh---hHhhcCc-cH--------------HHcCCCCcEEeCChhhCCHh-----------HhcccC
Confidence 4567999999999997 9999998 65 47998876677898765221 122224
Q ss_pred ccceEEecCCCCccccccccchhhhcccccchHHHHHHHhhhcCCc-------EEEEccccccccccchhHHHHHHHHHH
Q psy12304 194 EVDLIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLSFCDLFQPK-------YIILENVTGLVHFNKNEILQCIFHCLL 266 (620)
Q Consensus 194 ~vD~i~gGpPCQ~fS~~~~~~~~~~~d~r~~L~~~~~~~i~~~~P~-------~~v~ENV~gl~~~~~~~~~~~i~~~l~ 266 (620)
++|+|+||||||+||.++ .|+.||++|+|+|++++|+ +|+||||+||.+.. + ..+...|
T Consensus 237 ~~DlliGG~PCQ~FS~A~---------~Rg~Lf~ef~Riv~~~rPk~~~~~P~~fv~ENV~gL~~~~-~---~~i~~~L- 302 (386)
T 2pv0_B 237 PFDLVYGATPPLGHTCDR---------PPSWYLFQFHRLLQYARPKPGSPGPFFWMFVDNLVLNKED-L---DVASRFL- 302 (386)
T ss_dssp CCSEEEEECCCTTTCSCS---------CTHHHHHHHHHHHHHHSCCSSCCSCCEEEEEECSCSCHHH-H---HHHHHHT-
T ss_pred CCCEEEECCCCCcccccC---------CcchHHHHHHHHHHHhCCCcccCCCcEEEEEechhhhhcc-h---HHHHHHH-
Confidence 799999999999999985 3678999999999999998 89999999996432 2 2233333
Q ss_pred cCCCEEEEEEEecCCCCCcccccEEEEEEecCCC
Q psy12304 267 KMNYQVTFDVLQSGNYGVAQSRNRVVILASKPGY 300 (620)
Q Consensus 267 ~~GY~v~~~~l~A~~yGvPQ~R~R~fivg~~~~~ 300 (620)
+ +.+.+|||++||+||+|+| +||.+++.
T Consensus 303 ~----v~~~VLnA~dyGVPQrRrR--f~g~~~~~ 330 (386)
T 2pv0_B 303 E----MEPVTIPDVHGGSLQNAVR--VWSNIPAI 330 (386)
T ss_dssp T----SCCCEEECCCSSSCCCEEE--EEECSSSS
T ss_pred c----CCeEEEEccccCccccccE--EEEECCCc
Confidence 2 4567999999999999999 56887664
No 15
>1w4s_A Polybromo, polybromo 1 protein; BAH, bromo-associated homology domain, chromatin remodelling, PBAF, SWI/SNF-B, RSC, nuclear protein; 1.55A {Gallus gallus}
Probab=99.28 E-value=2.1e-12 Score=122.29 Aligned_cols=85 Identities=20% Similarity=0.224 Sum_probs=64.3
Q ss_pred CEEEEEEEeeccCCCCCCccccCCCeEEecCceeeeccccccceEEEEEeCCCCChhHhhhcCCCCCCeEEEEEEEecCC
Q psy12304 1 MKAHVQWLVRPNDTILGDKIQFDNSTLFLTNACESIDLSVIKKTVCVDFVTNDSSEEEILDNEHEEKDETIYTEYYRKTK 80 (620)
Q Consensus 1 ~~~~v~wfyRped~~~~~~~~~d~~eLf~Sd~~~~v~~~~I~gkC~V~~~~~~~~i~~~~~~~~~~pd~Fy~~~~y~~~~ 80 (620)
++++|+||||||||..+......+||||+|++.+++++++|.|||.|.+.++-....+- +....+.|||++.|+ ..
T Consensus 60 ~~v~v~WfyRPeet~~~~~~~~~~~EvF~S~~~d~~~~~~I~gkC~V~~~~~~~~~~p~---~~~~~dvF~c~~~Yd-~~ 135 (174)
T 1w4s_A 60 KWLYGCWFYRPNETFHLATRKFLEKEVFKSDYYNKVPVSKILGKCVVMFVKEYFKLCPE---NFRDEDVYVCESRYS-AK 135 (174)
T ss_dssp EEEEEEEEECGGGSCCCTTCEEETTEEEEEEEEEEEEGGGEEEEEEEEEHHHHTTEEET---TCCGGGEEEEEEEEE-TT
T ss_pred EEEEEEEecCHHHcccccCCcCCCCeeEEeCCcceecHHHeeeeEEEEECchhhhcCcC---CCCCCCEEEEeEEEc-cc
Confidence 37899999999999865544345999999999999999999999999987733221110 001136799999999 77
Q ss_pred CcceecCCC
Q psy12304 81 DKHFVQPNA 89 (620)
Q Consensus 81 ~~~~~~~~~ 89 (620)
.++|..++.
T Consensus 136 ~~~f~~i~~ 144 (174)
T 1w4s_A 136 TKSFKKIKL 144 (174)
T ss_dssp TTEEEECSS
T ss_pred cCeEccCcc
Confidence 788886543
No 16
>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*
Probab=98.88 E-value=1.6e-09 Score=126.73 Aligned_cols=83 Identities=28% Similarity=0.522 Sum_probs=67.0
Q ss_pred EEEEEEEeeccCCCCCCccccCCCeEEecCceeeeccccccceEEEEEeCCC--------CChhHhhhcCCCCCCeEEEE
Q psy12304 2 KAHVQWLVRPNDTILGDKIQFDNSTLFLTNACESIDLSVIKKTVCVDFVTND--------SSEEEILDNEHEEKDETIYT 73 (620)
Q Consensus 2 ~~~v~wfyRped~~~~~~~~~d~~eLf~Sd~~~~v~~~~I~gkC~V~~~~~~--------~~i~~~~~~~~~~pd~Fy~~ 73 (620)
+|+|||||||++|..+.. ++++|||+|++++++++++|.|||.|+++..- ...+...... .+++|||.
T Consensus 193 ~~~v~Wf~rp~ET~lg~~--~~~~ElFlsd~cd~~~l~~I~gkc~V~~~~~~~~w~~~~~~~~~~~~~~~--~~~~ffc~ 268 (1002)
T 3swr_A 193 MFHAHWFCAGTDTVLGAT--SDPLELFLVDECEDMQLSYIHSKVKVIYKAPSENWAMEGGMDPESLLEGD--DGKTYFYQ 268 (1002)
T ss_dssp EEEEEEEEEGGGSTTGGG--SCTTEEEEEEEEEEEEGGGEEEEECEEECCCCTTGGGCTTCCCCCSCCCC--CCTSEEEE
T ss_pred EEEEEEEecchhcccccC--CCCCceEeeccccCCcHHHhceeeEEEEccCCcchhhhcccccccccccC--CCCeEEEE
Confidence 799999999999997766 89999999999999999999999999998651 1111111111 36899999
Q ss_pred EEEecCCCcceecCCC
Q psy12304 74 EYYRKTKDKHFVQPNA 89 (620)
Q Consensus 74 ~~y~~~~~~~~~~~~~ 89 (620)
+.|+ ...+.|..+|.
T Consensus 269 ~~Y~-~~~~~F~~lp~ 283 (1002)
T 3swr_A 269 LWYD-QDYARFESPPK 283 (1002)
T ss_dssp EEEE-TTTTEEECCCC
T ss_pred EEEC-CCCCcccCCCh
Confidence 9999 88999998654
No 17
>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A*
Probab=98.80 E-value=4.9e-09 Score=125.56 Aligned_cols=84 Identities=25% Similarity=0.451 Sum_probs=64.3
Q ss_pred EEEEEEEeeccCCCCCCccccCCCeEEecCceeeeccccccceEEEEEeCCCCC------hhHhh--hcCCCCCCeEEEE
Q psy12304 2 KAHVQWLVRPNDTILGDKIQFDNSTLFLTNACESIDLSVIKKTVCVDFVTNDSS------EEEIL--DNEHEEKDETIYT 73 (620)
Q Consensus 2 ~~~v~wfyRped~~~~~~~~~d~~eLf~Sd~~~~v~~~~I~gkC~V~~~~~~~~------i~~~~--~~~~~~pd~Fy~~ 73 (620)
+|+|||||||+||+.+. .++++|||+|++++++++++|.|||.|++++.... .++.. .. ...+++|||.
T Consensus 504 ~~~~~WfyRp~ETvlg~--~~~~rElFlS~~~d~~~l~~I~gKC~V~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~F~C~ 580 (1330)
T 3av4_A 504 MFHAHWFCAGTDTVLGA--TSDPLELFLVGECENMQLSYIHSKVKVIYKAPSENWAMEGGTDPETTLPG-AEDGKTYFFQ 580 (1330)
T ss_dssp EEEEEEEEEGGGSTTGG--GSCTTEEEEEEEEEEEEGGGEEEEECEEECCCCTTSTTCCC--------------CCEEEE
T ss_pred EEEEEEEEchHHccccc--ccCCCeEEEecccccCcHHHhcceeEEEEeccchhhhhhcccCccccccc-cccCCceEEE
Confidence 79999999999998765 48999999999999999999999999999765311 10100 10 0135789999
Q ss_pred EEEecCCCcceecCCC
Q psy12304 74 EYYRKTKDKHFVQPNA 89 (620)
Q Consensus 74 ~~y~~~~~~~~~~~~~ 89 (620)
+.|+ ...+.|..++.
T Consensus 581 ~~Yd-~~~~~F~~lp~ 595 (1330)
T 3av4_A 581 LWYN-QEYARFESPPK 595 (1330)
T ss_dssp EEEE-TTTTEEECCCC
T ss_pred eEEC-CccCccCCcCc
Confidence 9999 88888887655
No 18
>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51
Probab=98.75 E-value=7.1e-08 Score=100.68 Aligned_cols=159 Identities=16% Similarity=0.132 Sum_probs=111.0
Q ss_pred cceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcC-------CCcccccchHHHHHHhhcccccccCcCCC
Q psy12304 118 LKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQ-------ECSVIQDDCNLVLKSLLKGHTQHKGVSLP 190 (620)
Q Consensus 118 l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p-------~~~~~~~di~~~~~~~~~~~~~~~~~~~p 190 (620)
.++||||||.|++++.+...|. -+.++|+++.+++..+.|.. ...++++|+.+++.....
T Consensus 155 ~~VLDlgcGtG~~sl~la~~ga--~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~----------- 221 (332)
T 2igt_A 155 LKVLNLFGYTGVASLVAAAAGA--EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREER----------- 221 (332)
T ss_dssp CEEEEETCTTCHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHH-----------
T ss_pred CcEEEcccccCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHh-----------
Confidence 4799999999999999999987 48899999999999988742 256778898876543210
Q ss_pred CCCccceEEecCCCCccccccccchhhhcccccchHHHHHH-HhhhcCCcEE-EEccccccccccchhHHHHHHHHHHcC
Q psy12304 191 QKHEVDLIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLS-FCDLFQPKYI-ILENVTGLVHFNKNEILQCIFHCLLKM 268 (620)
Q Consensus 191 ~~~~vD~i~gGpPCQ~fS~~~~~~~~~~~d~r~~L~~~~~~-~i~~~~P~~~-v~ENV~gl~~~~~~~~~~~i~~~l~~~ 268 (620)
..+.+|+|+..|||.+.+..+.... ... .+..+++ +.+.++|.-+ ++++...... ....+.+.+.+.+.+.
T Consensus 222 ~~~~fD~Ii~dPP~~~~~~~~~~~~-~~~-----~~~~ll~~~~~~LkpgG~lli~~~~~~~~-~~~~~~~~l~~a~~~~ 294 (332)
T 2igt_A 222 RGSTYDIILTDPPKFGRGTHGEVWQ-LFD-----HLPLMLDICREILSPKALGLVLTAYSIRA-SFYSMHELMRETMRGA 294 (332)
T ss_dssp HTCCBSEEEECCCSEEECTTCCEEE-HHH-----HHHHHHHHHHHTBCTTCCEEEEEECCTTS-CHHHHHHHHHHHTTTS
T ss_pred cCCCceEEEECCccccCCchHHHHH-HHH-----HHHHHHHHHHHhcCcCcEEEEEECCCCCC-CHHHHHHHHHHHHHHc
Confidence 0236899999999988764321000 000 1222222 3456788765 7888765431 1223334444577789
Q ss_pred CCEEEEEEEecCCCCCccc-ccEEEEEEe
Q psy12304 269 NYQVTFDVLQSGNYGVAQS-RNRVVILAS 296 (620)
Q Consensus 269 GY~v~~~~l~A~~yGvPQ~-R~R~fivg~ 296 (620)
||.+....+....+++||. +.|++.+|.
T Consensus 295 g~~v~~~e~~~p~~~~~q~~~~r~lp~g~ 323 (332)
T 2igt_A 295 GGVVASGELVIREAGLDGKTPGRVLSTSL 323 (332)
T ss_dssp CSEEEEEEEEEECCCSSSCCCCCEEEEEE
T ss_pred CCeEEEEEEecccCCcccccCCceeeeEE
Confidence 9999988889999999999 999887774
No 19
>4dov_A ORC1, origin recognition complex subunit 1; DNA replication, replication; 1.70A {Mus musculus} PDB: 4dow_A*
Probab=98.74 E-value=2.2e-08 Score=91.10 Aligned_cols=79 Identities=16% Similarity=0.191 Sum_probs=61.1
Q ss_pred EEEEEEEeeccCCCCCCccc----cCCCeEEecCce---eeeccccccceEEEEEeCCCCChhHhhhcCCCCCCeEEEEE
Q psy12304 2 KAHVQWLVRPNDTILGDKIQ----FDNSTLFLTNAC---ESIDLSVIKKTVCVDFVTNDSSEEEILDNEHEEKDETIYTE 74 (620)
Q Consensus 2 ~~~v~wfyRped~~~~~~~~----~d~~eLf~Sd~~---~~v~~~~I~gkC~V~~~~~~~~i~~~~~~~~~~pd~Fy~~~ 74 (620)
..+|||||||+++..++..+ .+.+|||++|+. +.++++.|.|+|.|+.+.+.+.++.=... .+.||++.
T Consensus 75 ~A~VQWy~R~~EiP~~k~~l~g~~~~~qEIF~~d~~~~d~~I~aeTIi~~c~V~~~~~~e~~p~~~~~----e~t~Fvkl 150 (163)
T 4dov_A 75 CARVQWFVRFLEIPVSKRHLLGRSPPAQEIFWYDCSDWDNKINVETIIGPVQVVALAPEEVIPVDQKS----EETLFVKL 150 (163)
T ss_dssp EEEEEEEEEGGGSCTTTGGGGCSCCCTTEEEEECCSCSCCEEEGGGEEEEEEEEECCTTCCCCSSCCC----CSEEEEEE
T ss_pred EEEEEeeechhhccccchhhccCCCCCCeEEEecCCCCcccccHHHeeeceEEEEcCCccccCCCccc----ceEEEEEE
Confidence 46899999999987666552 467899998888 48999999999999999877555322232 58999999
Q ss_pred EEecCCCcceecC
Q psy12304 75 YYRKTKDKHFVQP 87 (620)
Q Consensus 75 ~y~~~~~~~~~~~ 87 (620)
+++ .+.|.++
T Consensus 151 sWd---~k~f~pl 160 (163)
T 4dov_A 151 SWN---KKDFAPL 160 (163)
T ss_dssp EEC---SSCEEEC
T ss_pred Eec---CCcceeC
Confidence 998 3456543
No 20
>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}
Probab=98.21 E-value=5.2e-06 Score=88.62 Aligned_cols=136 Identities=17% Similarity=0.188 Sum_probs=91.3
Q ss_pred cceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhc------C-CCcccccchHHHHHHhhcccccccCcCCC
Q psy12304 118 LKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANF------Q-ECSVIQDDCNLVLKSLLKGHTQHKGVSLP 190 (620)
Q Consensus 118 l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~------p-~~~~~~~di~~~~~~~~~~~~~~~~~~~p 190 (620)
-++||||||.|++++.+...|. ..+.++|+++.|++..+.|. . +..++.+|+.+++.....
T Consensus 222 ~~VLDl~cG~G~~sl~la~~g~-~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~----------- 289 (396)
T 3c0k_A 222 KRVLNCFSYTGGFAVSALMGGC-SQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRD----------- 289 (396)
T ss_dssp CEEEEESCTTCSHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHH-----------
T ss_pred CeEEEeeccCCHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHh-----------
Confidence 4799999999999999999886 67999999999999988874 2 345677888776543211
Q ss_pred CCCccceEEecCCCCccccccccchhhhcccccchHHHHHHHhhhcCCc-EEEEccccccccccchhHHHHHHHHHHcCC
Q psy12304 191 QKHEVDLIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLSFCDLFQPK-YIILENVTGLVHFNKNEILQCIFHCLLKMN 269 (620)
Q Consensus 191 ~~~~vD~i~gGpPCQ~fS~~~~~~~~~~~d~r~~L~~~~~~~i~~~~P~-~~v~ENV~gl~~~~~~~~~~~i~~~l~~~G 269 (620)
..+.+|+|+..||+.+.|.... .+....+-.-+..+++.++|. ++++.+..+.+.. ..+.+.+.+.+.+.|
T Consensus 290 ~~~~fD~Ii~dpP~~~~~~~~~------~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~--~~~~~~i~~~~~~~g 361 (396)
T 3c0k_A 290 RGEKFDVIVMDPPKFVENKSQL------MGACRGYKDINMLAIQLLNEGGILLTFSCSGLMTS--DLFQKIIADAAIDAG 361 (396)
T ss_dssp TTCCEEEEEECCSSTTTCSSSS------SCCCTHHHHHHHHHHHTEEEEEEEEEEECCTTCCH--HHHHHHHHHHHHHHT
T ss_pred cCCCCCEEEECCCCCCCChhHH------HHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcCCH--HHHHHHHHHHHHHcC
Confidence 1236899999999877765322 111112222233456677786 5666666655432 234444555788888
Q ss_pred CEEE
Q psy12304 270 YQVT 273 (620)
Q Consensus 270 Y~v~ 273 (620)
+.+.
T Consensus 362 ~~~~ 365 (396)
T 3c0k_A 362 RDVQ 365 (396)
T ss_dssp CCEE
T ss_pred CeEE
Confidence 6654
No 21
>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32
Probab=97.86 E-value=5.2e-05 Score=72.64 Aligned_cols=117 Identities=20% Similarity=0.256 Sum_probs=76.9
Q ss_pred CcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcCC----CcccccchHHHHHHhhcccccccCcCCCCC
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQE----CSVIQDDCNLVLKSLLKGHTQHKGVSLPQK 192 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p~----~~~~~~di~~~~~~~~~~~~~~~~~~~p~~ 192 (620)
.-+++|++||.|+++..+...|. ..+.++|+++.+++..+.|... ..++.+|+. .++
T Consensus 50 ~~~vlD~g~G~G~~~~~l~~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~----------------~~~-- 110 (207)
T 1wy7_A 50 GKVVADLGAGTGVLSYGALLLGA-KEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVS----------------EFN-- 110 (207)
T ss_dssp TCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGG----------------GCC--
T ss_pred cCEEEEeeCCCCHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHHHHcCCCEEEEECchH----------------HcC--
Confidence 34799999999999999999887 5699999999999999998752 334444442 223
Q ss_pred CccceEEecCCCCccccccccchhhhcccccchHHHHHHHhhhcCCcEEEEccccccccccchhHHHHHHHHHHcCCCEE
Q psy12304 193 HEVDLIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLSFCDLFQPKYIILENVTGLVHFNKNEILQCIFHCLLKMNYQV 272 (620)
Q Consensus 193 ~~vD~i~gGpPCQ~fS~~~~~~~~~~~d~r~~L~~~~~~~i~~~~P~~~v~ENV~gl~~~~~~~~~~~i~~~l~~~GY~v 272 (620)
+.+|+|+..||+...+.. ....++....+++ ..+++=.+ ........+.+.|.+.||.+
T Consensus 111 ~~~D~v~~~~p~~~~~~~----------~~~~~l~~~~~~l-----~~~~~~~~------~~~~~~~~~~~~l~~~g~~~ 169 (207)
T 1wy7_A 111 SRVDIVIMNPPFGSQRKH----------ADRPFLLKAFEIS-----DVVYSIHL------AKPEVRRFIEKFSWEHGFVV 169 (207)
T ss_dssp CCCSEEEECCCCSSSSTT----------TTHHHHHHHHHHC-----SEEEEEEE------CCHHHHHHHHHHHHHTTEEE
T ss_pred CCCCEEEEcCCCccccCC----------chHHHHHHHHHhc-----CcEEEEEe------CCcCCHHHHHHHHHHCCCeE
Confidence 379999999997654420 0112333344433 22221111 12244566777888999976
Q ss_pred E
Q psy12304 273 T 273 (620)
Q Consensus 273 ~ 273 (620)
.
T Consensus 170 ~ 170 (207)
T 1wy7_A 170 T 170 (207)
T ss_dssp E
T ss_pred E
Confidence 5
No 22
>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*
Probab=97.71 E-value=7.9e-05 Score=75.45 Aligned_cols=119 Identities=16% Similarity=0.153 Sum_probs=83.6
Q ss_pred CcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcC-----C-CcccccchHHHHHHhhcccccccCcCCC
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQ-----E-CSVIQDDCNLVLKSLLKGHTQHKGVSLP 190 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p-----~-~~~~~~di~~~~~~~~~~~~~~~~~~~p 190 (620)
.-+++|+|||.|++++.+...|. ..+.++|+++.+++..+.|.. + ..++++|+.+ ++
T Consensus 126 ~~~VLDlgcG~G~~~~~la~~~~-~~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~----------------~~ 188 (278)
T 2frn_A 126 DELVVDMFAGIGHLSLPIAVYGK-AKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRD----------------FP 188 (278)
T ss_dssp TCEEEETTCTTTTTHHHHHHHTC-CEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTT----------------CC
T ss_pred CCEEEEecccCCHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHH----------------hc
Confidence 34799999999999999999887 469999999999999888742 1 2344555432 22
Q ss_pred CCCccceEEecCCCCccccccccchhhhcccccchHHHHHHHhhhcCCc--EEEEcccc-ccccccchhHHHHHHHHHHc
Q psy12304 191 QKHEVDLIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLSFCDLFQPK--YIILENVT-GLVHFNKNEILQCIFHCLLK 267 (620)
Q Consensus 191 ~~~~vD~i~gGpPCQ~fS~~~~~~~~~~~d~r~~L~~~~~~~i~~~~P~--~~v~ENV~-gl~~~~~~~~~~~i~~~l~~ 267 (620)
..+.+|+|+..||+.. ..++.+. .+.++|. +++.++++ +... ...++.+.+.+.+
T Consensus 189 ~~~~fD~Vi~~~p~~~----------------~~~l~~~---~~~LkpgG~l~~~~~~~~~~~~---~~~~~~i~~~~~~ 246 (278)
T 2frn_A 189 GENIADRILMGYVVRT----------------HEFIPKA---LSIAKDGAIIHYHNTVPEKLMP---REPFETFKRITKE 246 (278)
T ss_dssp CCSCEEEEEECCCSSG----------------GGGHHHH---HHHEEEEEEEEEEEEEEGGGTT---TTTHHHHHHHHHH
T ss_pred ccCCccEEEECCchhH----------------HHHHHHH---HHHCCCCeEEEEEEeecccccc---ccHHHHHHHHHHH
Confidence 2457999999999422 1233333 3456675 67778876 3321 3457788889999
Q ss_pred CCCEEEE
Q psy12304 268 MNYQVTF 274 (620)
Q Consensus 268 ~GY~v~~ 274 (620)
.||.+..
T Consensus 247 ~G~~~~~ 253 (278)
T 2frn_A 247 YGYDVEK 253 (278)
T ss_dssp TTCEEEE
T ss_pred cCCeeEE
Confidence 9998765
No 23
>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A
Probab=97.68 E-value=9.5e-05 Score=74.64 Aligned_cols=135 Identities=18% Similarity=0.231 Sum_probs=78.8
Q ss_pred CcceecccccccHHHHHHHh--cCCCccEEEEcCchhHHHHHHHhc-----CCCcccccchHHHHHHhhcccccccCcCC
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQ--AGVAKPCWSVELERSEAASYDANF-----QECSVIQDDCNLVLKSLLKGHTQHKGVSL 189 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~--aG~~~~~~a~e~d~~a~~ty~~N~-----p~~~~~~~di~~~~~~~~~~~~~~~~~~~ 189 (620)
.-++||++||.||.+.-+.+ .|. ..++|+|+++.+++..+.|. ++..++++|+.++......
T Consensus 84 g~~VLDlgaG~G~~t~~la~~~~~~-~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~---------- 152 (274)
T 3ajd_A 84 DDFILDMCAAPGGKTTHLAQLMKNK-GTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLK---------- 152 (274)
T ss_dssp TCEEEETTCTTCHHHHHHHHHTTTC-SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHH----------
T ss_pred cCEEEEeCCCccHHHHHHHHHcCCC-CEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhh----------
Confidence 34799999999999988876 453 35899999999999988873 3556677788765321100
Q ss_pred CCCCccceEEecCCCCccccccccchhhhccc--ccchHHHHHH-HhhhcCCcEEEEccccccccccchhHHHHHHH
Q psy12304 190 PQKHEVDLIVAGPPCQGFSQLNRARELEKSKL--KNGLVFTFLS-FCDLFQPKYIILENVTGLVHFNKNEILQCIFH 263 (620)
Q Consensus 190 p~~~~vD~i~gGpPCQ~fS~~~~~~~~~~~d~--r~~L~~~~~~-~i~~~~P~~~v~ENV~gl~~~~~~~~~~~i~~ 263 (620)
..+.+|+|+..+||.++....+......++. -..+...+++ +.+.++|.-.++-....+........++.+++
T Consensus 153 -~~~~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~~~~ene~~v~~~l~ 228 (274)
T 3ajd_A 153 -NEIFFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSMEVEENEEVIKYILQ 228 (274)
T ss_dssp -TTCCEEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCCCTTSSHHHHHHHHH
T ss_pred -ccccCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCChHHhHHHHHHHHH
Confidence 1246899999999998876554211111110 0112233333 44567897766665555554444444444443
No 24
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}
Probab=97.56 E-value=0.0008 Score=62.33 Aligned_cols=120 Identities=16% Similarity=0.161 Sum_probs=80.0
Q ss_pred CcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhc-----CCCcccccchHHHHHHhhcccccccCcCCCC
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANF-----QECSVIQDDCNLVLKSLLKGHTQHKGVSLPQ 191 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~-----p~~~~~~~di~~~~~~~~~~~~~~~~~~~p~ 191 (620)
..+++|+.||.|.++..+...+ ..+.++|+++.+++..+.|. ++..++.+|+.+. ++.
T Consensus 36 ~~~vLdiG~G~G~~~~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~---------------~~~ 98 (183)
T 2yxd_A 36 DDVVVDVGCGSGGMTVEIAKRC--KFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAEDV---------------LDK 98 (183)
T ss_dssp TCEEEEESCCCSHHHHHHHTTS--SEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHHH---------------GGG
T ss_pred CCEEEEeCCCCCHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCcccc---------------ccC
Confidence 3489999999999999998844 35889999999998888775 3455666776542 111
Q ss_pred CCccceEEecCCCCccccccccchhhhcccccchHHHHHHHhhhcCCcEEEEccccccccccchhHHHHHHHHHHcCCCE
Q psy12304 192 KHEVDLIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLSFCDLFQPKYIILENVTGLVHFNKNEILQCIFHCLLKMNYQ 271 (620)
Q Consensus 192 ~~~vD~i~gGpPCQ~fS~~~~~~~~~~~d~r~~L~~~~~~~i~~~~P~~~v~ENV~gl~~~~~~~~~~~i~~~l~~~GY~ 271 (620)
+.+|+|+..++ . ....+++.+... |.-.++=.... ...+..+++.|.+.||.
T Consensus 99 -~~~D~i~~~~~-------~-------------~~~~~l~~~~~~-~gG~l~~~~~~------~~~~~~~~~~l~~~g~~ 150 (183)
T 2yxd_A 99 -LEFNKAFIGGT-------K-------------NIEKIIEILDKK-KINHIVANTIV------LENAAKIINEFESRGYN 150 (183)
T ss_dssp -CCCSEEEECSC-------S-------------CHHHHHHHHHHT-TCCEEEEEESC------HHHHHHHHHHHHHTTCE
T ss_pred -CCCcEEEECCc-------c-------------cHHHHHHHHhhC-CCCEEEEEecc------cccHHHHHHHHHHcCCe
Confidence 46899998877 0 112333444444 65433322222 23467788999999999
Q ss_pred EEEEEEecCC
Q psy12304 272 VTFDVLQSGN 281 (620)
Q Consensus 272 v~~~~l~A~~ 281 (620)
+....+....
T Consensus 151 ~~~~~~~~~~ 160 (183)
T 2yxd_A 151 VDAVNVFISY 160 (183)
T ss_dssp EEEEEEEEEE
T ss_pred EEEEEeeeeh
Confidence 8776544433
No 25
>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}
Probab=97.54 E-value=0.0003 Score=74.78 Aligned_cols=130 Identities=12% Similarity=0.163 Sum_probs=80.7
Q ss_pred CcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhc----CCCcccccchHHHHHHhhcccccccCcCCCCC
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANF----QECSVIQDDCNLVLKSLLKGHTQHKGVSLPQK 192 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~----p~~~~~~~di~~~~~~~~~~~~~~~~~~~p~~ 192 (620)
.-++||+|||.|++++.+...|. + +.++|+++.|++.-+.|. -...+.++|+.+++.. + .
T Consensus 215 g~~VLDlg~GtG~~sl~~a~~ga-~-V~avDis~~al~~a~~n~~~ng~~~~~~~~D~~~~l~~------------~--~ 278 (393)
T 4dmg_A 215 GERVLDVYSYVGGFALRAARKGA-Y-ALAVDKDLEALGVLDQAALRLGLRVDIRHGEALPTLRG------------L--E 278 (393)
T ss_dssp TCEEEEESCTTTHHHHHHHHTTC-E-EEEEESCHHHHHHHHHHHHHHTCCCEEEESCHHHHHHT------------C--C
T ss_pred CCeEEEcccchhHHHHHHHHcCC-e-EEEEECCHHHHHHHHHHHHHhCCCCcEEEccHHHHHHH------------h--c
Confidence 35799999999999999999997 6 999999999999888774 2223557788766431 1 2
Q ss_pred CccceEEecCCCCccccccccchhhhcccccchHHHHH-HHhhhcCCcEEE--EccccccccccchhHHHHHHHHHHcCC
Q psy12304 193 HEVDLIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFL-SFCDLFQPKYII--LENVTGLVHFNKNEILQCIFHCLLKMN 269 (620)
Q Consensus 193 ~~vD~i~gGpPCQ~fS~~~~~~~~~~~d~r~~L~~~~~-~~i~~~~P~~~v--~ENV~gl~~~~~~~~~~~i~~~l~~~G 269 (620)
+.+|+|+..|||=.-|.... .+.. ..+..++ .+.+.++|.-.+ ..+...+- ...+.+.+.+.+.+.|
T Consensus 279 ~~fD~Ii~dpP~f~~~~~~~------~~~~-~~~~~ll~~a~~~LkpGG~Lv~~s~s~~~~---~~~f~~~v~~a~~~~g 348 (393)
T 4dmg_A 279 GPFHHVLLDPPTLVKRPEEL------PAMK-RHLVDLVREALRLLAEEGFLWLSSCSYHLR---LEDLLEVARRAAADLG 348 (393)
T ss_dssp CCEEEEEECCCCCCSSGGGH------HHHH-HHHHHHHHHHHHTEEEEEEEEEEECCTTSC---HHHHHHHHHHHHHHHT
T ss_pred CCCCEEEECCCcCCCCHHHH------HHHH-HHHHHHHHHHHHhcCCCCEEEEEECCCCCC---HHHHHHHHHHHHHHhC
Confidence 34999999999933222111 1100 0112222 234566785544 55555432 2234445556666666
Q ss_pred CEE
Q psy12304 270 YQV 272 (620)
Q Consensus 270 Y~v 272 (620)
..+
T Consensus 349 ~~~ 351 (393)
T 4dmg_A 349 RRL 351 (393)
T ss_dssp CCE
T ss_pred CeE
Confidence 543
No 26
>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*
Probab=97.53 E-value=0.00031 Score=74.54 Aligned_cols=79 Identities=22% Similarity=0.241 Sum_probs=59.9
Q ss_pred cceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhc-----C--CCcccccchHHHHHHhhcccccccCcCCC
Q psy12304 118 LKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANF-----Q--ECSVIQDDCNLVLKSLLKGHTQHKGVSLP 190 (620)
Q Consensus 118 l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~-----p--~~~~~~~di~~~~~~~~~~~~~~~~~~~p 190 (620)
-++||||||.|++++-+...|. .-+.++|+++.|++.-+.|. . +..++++|+.+.+.....
T Consensus 214 ~~VLDl~cGtG~~sl~la~~ga-~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~----------- 281 (385)
T 2b78_A 214 KTVLNLFSYTAAFSVAAAMGGA-MATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARR----------- 281 (385)
T ss_dssp CEEEEETCTTTHHHHHHHHTTB-SEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHH-----------
T ss_pred CeEEEEeeccCHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHH-----------
Confidence 4799999999999999998886 67999999999999888774 2 456778898876543211
Q ss_pred CCCccceEEecCCCCccc
Q psy12304 191 QKHEVDLIVAGPPCQGFS 208 (620)
Q Consensus 191 ~~~~vD~i~gGpPCQ~fS 208 (620)
....+|+|+.-||+-+.|
T Consensus 282 ~~~~fD~Ii~DPP~~~~~ 299 (385)
T 2b78_A 282 HHLTYDIIIIDPPSFARN 299 (385)
T ss_dssp TTCCEEEEEECCCCC---
T ss_pred hCCCccEEEECCCCCCCC
Confidence 113689999999986544
No 27
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=97.53 E-value=0.00083 Score=62.80 Aligned_cols=148 Identities=14% Similarity=0.092 Sum_probs=97.2
Q ss_pred CcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcCCCcccccchHHHHHHhhcccccccCcCCCCCCccc
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQECSVIQDDCNLVLKSLLKGHTQHKGVSLPQKHEVD 196 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p~~~~~~~di~~~~~~~~~~~~~~~~~~~p~~~~vD 196 (620)
..++||+.||.|.++..+...|. -+.++|+++.+++..+.|.++..++..|+.++ .++ .+.+|
T Consensus 47 ~~~vLdiG~G~G~~~~~l~~~~~--~v~~~D~~~~~~~~a~~~~~~~~~~~~d~~~~--------------~~~-~~~~D 109 (195)
T 3cgg_A 47 GAKILDAGCGQGRIGGYLSKQGH--DVLGTDLDPILIDYAKQDFPEARWVVGDLSVD--------------QIS-ETDFD 109 (195)
T ss_dssp TCEEEEETCTTTHHHHHHHHTTC--EEEEEESCHHHHHHHHHHCTTSEEEECCTTTS--------------CCC-CCCEE
T ss_pred CCeEEEECCCCCHHHHHHHHCCC--cEEEEcCCHHHHHHHHHhCCCCcEEEcccccC--------------CCC-CCcee
Confidence 45899999999999999999886 48899999999999999998776666665321 122 35799
Q ss_pred eEEecCCCCccccccccchhhhcccccchHHHHHHHhhhcCCcEEEEccccccccccchhHHHHHHHHHHcCCCEEEEEE
Q psy12304 197 LIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLSFCDLFQPKYIILENVTGLVHFNKNEILQCIFHCLLKMNYQVTFDV 276 (620)
Q Consensus 197 ~i~gGpPCQ~fS~~~~~~~~~~~d~r~~L~~~~~~~i~~~~P~~~v~ENV~gl~~~~~~~~~~~i~~~l~~~GY~v~~~~ 276 (620)
+|+..+++-.+... . ....++. .+.+.++|.-.++=.+... .......+...|.+.|+.+....
T Consensus 110 ~i~~~~~~~~~~~~-----~----~~~~~l~---~~~~~l~~~G~l~~~~~~~----~~~~~~~~~~~l~~~Gf~~~~~~ 173 (195)
T 3cgg_A 110 LIVSAGNVMGFLAE-----D----GREPALA---NIHRALGADGRAVIGFGAG----RGWVFGDFLEVAERVGLELENAF 173 (195)
T ss_dssp EEEECCCCGGGSCH-----H----HHHHHHH---HHHHHEEEEEEEEEEEETT----SSCCHHHHHHHHHHHTEEEEEEE
T ss_pred EEEECCcHHhhcCh-----H----HHHHHHH---HHHHHhCCCCEEEEEeCCC----CCcCHHHHHHHHHHcCCEEeeee
Confidence 99987665443210 0 0112222 3345567765444322221 11235677888888999987665
Q ss_pred EecCCCCCcccccEEEEEEec
Q psy12304 277 LQSGNYGVAQSRNRVVILASK 297 (620)
Q Consensus 277 l~A~~yGvPQ~R~R~fivg~~ 297 (620)
-+.......+...++++++.+
T Consensus 174 ~~~~~~~~~~~~~~~~~v~~k 194 (195)
T 3cgg_A 174 ESWDLKPFVQGSEFLVAVFTK 194 (195)
T ss_dssp SSTTCCBCCTTCSEEEEEEEE
T ss_pred cccccCcCCCCCcEEEEEEec
Confidence 554444455667777777654
No 28
>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46
Probab=97.49 E-value=0.00021 Score=68.54 Aligned_cols=71 Identities=20% Similarity=0.348 Sum_probs=56.4
Q ss_pred cceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhc-----CCCcccccchHHHHHHhhcccccccCcCCCCC
Q psy12304 118 LKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANF-----QECSVIQDDCNLVLKSLLKGHTQHKGVSLPQK 192 (620)
Q Consensus 118 l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~-----p~~~~~~~di~~~~~~~~~~~~~~~~~~~p~~ 192 (620)
-++|||+||.|.+++.+...|. ..+.++|+++.+++..+.|. ++..++++|+.+.+. . ..
T Consensus 56 ~~vLDlgcG~G~~~~~l~~~~~-~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~------------~--~~ 120 (202)
T 2fpo_A 56 AQCLDCFAGSGALGLEALSRYA-AGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLA------------Q--KG 120 (202)
T ss_dssp CEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHS------------S--CC
T ss_pred CeEEEeCCCcCHHHHHHHhcCC-CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHh------------h--cC
Confidence 4799999999999998777786 56899999999999998886 345667788766421 0 12
Q ss_pred CccceEEecCC
Q psy12304 193 HEVDLIVAGPP 203 (620)
Q Consensus 193 ~~vD~i~gGpP 203 (620)
+.+|+|+..||
T Consensus 121 ~~fD~V~~~~p 131 (202)
T 2fpo_A 121 TPHNIVFVDPP 131 (202)
T ss_dssp CCEEEEEECCS
T ss_pred CCCCEEEECCC
Confidence 47999999998
No 29
>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46
Probab=97.43 E-value=0.00021 Score=68.44 Aligned_cols=73 Identities=26% Similarity=0.383 Sum_probs=56.4
Q ss_pred cceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhc-------CCCcccccchHHHHHHhhcccccccCcCCC
Q psy12304 118 LKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANF-------QECSVIQDDCNLVLKSLLKGHTQHKGVSLP 190 (620)
Q Consensus 118 l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~-------p~~~~~~~di~~~~~~~~~~~~~~~~~~~p 190 (620)
.++||++||.|++++.+...|. ..+.++|+++.+++..+.|. ++..++++|+.+++. .++
T Consensus 55 ~~vLDlGcGtG~~~~~~~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~------------~~~ 121 (201)
T 2ift_A 55 SECLDGFAGSGSLGFEALSRQA-KKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLK------------QPQ 121 (201)
T ss_dssp CEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTT------------SCC
T ss_pred CeEEEcCCccCHHHHHHHHccC-CEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHH------------hhc
Confidence 4799999999999998777786 56999999999999988875 345667778765411 111
Q ss_pred CCCc-cceEEecCCC
Q psy12304 191 QKHE-VDLIVAGPPC 204 (620)
Q Consensus 191 ~~~~-vD~i~gGpPC 204 (620)
.+. +|+|+..||.
T Consensus 122 -~~~~fD~I~~~~~~ 135 (201)
T 2ift_A 122 -NQPHFDVVFLDPPF 135 (201)
T ss_dssp -SSCCEEEEEECCCS
T ss_pred -cCCCCCEEEECCCC
Confidence 246 8999999993
No 30
>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}
Probab=97.39 E-value=0.0014 Score=65.09 Aligned_cols=160 Identities=18% Similarity=0.102 Sum_probs=89.8
Q ss_pred CcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcC------CCcccccchHHHHHHhhcccccccCcCCC
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQ------ECSVIQDDCNLVLKSLLKGHTQHKGVSLP 190 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p------~~~~~~~di~~~~~~~~~~~~~~~~~~~p 190 (620)
.-++||+.||.|++++.+.+.+. ..+.++|+++.+++.-+.|.. +..++++|+.++. ..++
T Consensus 50 ~~~vLDlG~G~G~~~~~la~~~~-~~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~------------~~~~ 116 (259)
T 3lpm_A 50 KGKIIDLCSGNGIIPLLLSTRTK-AKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKIT------------DLIP 116 (259)
T ss_dssp CCEEEETTCTTTHHHHHHHTTCC-CEEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGG------------GTSC
T ss_pred CCEEEEcCCchhHHHHHHHHhcC-CcEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhh------------hhhc
Confidence 45899999999999999998875 478999999999988887753 2455667765431 1121
Q ss_pred CCCccceEEecCCCCccccccccchhh-hcccc---cchHHHHHH-HhhhcCCcEEEEccccccccccchhHHHHHHHHH
Q psy12304 191 QKHEVDLIVAGPPCQGFSQLNRARELE-KSKLK---NGLVFTFLS-FCDLFQPKYIILENVTGLVHFNKNEILQCIFHCL 265 (620)
Q Consensus 191 ~~~~vD~i~gGpPCQ~fS~~~~~~~~~-~~d~r---~~L~~~~~~-~i~~~~P~~~v~ENV~gl~~~~~~~~~~~i~~~l 265 (620)
.+.+|+|+..||+-..+..+...... ....+ ...+..+++ +.+.++|.-.++= | .. ...+..++..+
T Consensus 117 -~~~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~-~---~~---~~~~~~~~~~l 188 (259)
T 3lpm_A 117 -KERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANF-V---HR---PERLLDIIDIM 188 (259)
T ss_dssp -TTCEEEEEECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEE-E---EC---TTTHHHHHHHH
T ss_pred -cCCccEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEE-E---Ec---HHHHHHHHHHH
Confidence 35899999999987663322211000 00001 011223333 3345677543332 1 11 12356677888
Q ss_pred HcCCCEEEEEEEecCCCCCcccccEEEEEEecCC
Q psy12304 266 LKMNYQVTFDVLQSGNYGVAQSRNRVVILASKPG 299 (620)
Q Consensus 266 ~~~GY~v~~~~l~A~~yGvPQ~R~R~fivg~~~~ 299 (620)
.+.|+.+.....-...-|.| -.|+++.+.+.+
T Consensus 189 ~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~k~~ 220 (259)
T 3lpm_A 189 RKYRLEPKRIQFVHPRSDRE--ANTVLVEGIKDG 220 (259)
T ss_dssp HHTTEEEEEEEEEESSTTSC--CSEEEEEEEETC
T ss_pred HHCCCceEEEEEeecCCCCC--cEEEEEEEEeCC
Confidence 88898875443322222322 246666666643
No 31
>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*
Probab=97.38 E-value=0.00022 Score=70.01 Aligned_cols=76 Identities=20% Similarity=0.266 Sum_probs=61.5
Q ss_pred CcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhc------CCCcccccchHHHHHHhhcccccccCcCCC
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANF------QECSVIQDDCNLVLKSLLKGHTQHKGVSLP 190 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~------p~~~~~~~di~~~~~~~~~~~~~~~~~~~p 190 (620)
..++||++||.|++++.+...|. .+.++|+++.+++..+.|. ++..++.+|+.++.
T Consensus 79 ~~~vLD~gcG~G~~~~~la~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---------------- 140 (241)
T 3gdh_A 79 CDVVVDAFCGVGGNTIQFALTGM--RVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLA---------------- 140 (241)
T ss_dssp CSEEEETTCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHG----------------
T ss_pred CCEEEECccccCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhc----------------
Confidence 45899999999999999999985 4889999999999888875 34556677876551
Q ss_pred CCCccceEEecCCCCccccc
Q psy12304 191 QKHEVDLIVAGPPCQGFSQL 210 (620)
Q Consensus 191 ~~~~vD~i~gGpPCQ~fS~~ 210 (620)
..+.+|+|+..+||.+.+..
T Consensus 141 ~~~~~D~v~~~~~~~~~~~~ 160 (241)
T 3gdh_A 141 SFLKADVVFLSPPWGGPDYA 160 (241)
T ss_dssp GGCCCSEEEECCCCSSGGGG
T ss_pred ccCCCCEEEECCCcCCcchh
Confidence 22479999999999987754
No 32
>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51
Probab=97.36 E-value=0.00062 Score=72.39 Aligned_cols=135 Identities=13% Similarity=0.089 Sum_probs=84.1
Q ss_pred CcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcC------CCcccccchHHHHHHhhcccccccCcCCC
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQ------ECSVIQDDCNLVLKSLLKGHTQHKGVSLP 190 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p------~~~~~~~di~~~~~~~~~~~~~~~~~~~p 190 (620)
.-+++|+|||.|++++.+...|. .-+.++|+++.|++..+.|.. +..++.+|+.+++..+..
T Consensus 218 ~~~VLDl~~G~G~~~~~la~~g~-~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~----------- 285 (396)
T 2as0_A 218 GDRVLDVFTYTGGFAIHAAIAGA-DEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQK----------- 285 (396)
T ss_dssp TCEEEETTCTTTHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHH-----------
T ss_pred CCeEEEecCCCCHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHh-----------
Confidence 35899999999999999998886 679999999999988887752 345667888776543211
Q ss_pred CCCccceEEecCCCCccccccccchhhhcccccchHHHHHHHhhhcCCcE--EEEccccccccccchhHHHHHHHHHHcC
Q psy12304 191 QKHEVDLIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLSFCDLFQPKY--IILENVTGLVHFNKNEILQCIFHCLLKM 268 (620)
Q Consensus 191 ~~~~vD~i~gGpPCQ~fS~~~~~~~~~~~d~r~~L~~~~~~~i~~~~P~~--~v~ENV~gl~~~~~~~~~~~i~~~l~~~ 268 (620)
..+.+|+|+.-||+-+.|..... .....+-.-+..+++.++|.- ++..|-..+. ...+.+.+.+.+...
T Consensus 286 ~~~~fD~Vi~dpP~~~~~~~~~~------~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~---~~~~~~~v~~~~~~~ 356 (396)
T 2as0_A 286 KGEKFDIVVLDPPAFVQHEKDLK------AGLRAYFNVNFAGLNLVKDGGILVTCSCSQHVD---LQMFKDMIIAAGAKA 356 (396)
T ss_dssp TTCCEEEEEECCCCSCSSGGGHH------HHHHHHHHHHHHHHTTEEEEEEEEEEECCTTSC---HHHHHHHHHHHHHHT
T ss_pred hCCCCCEEEECCCCCCCCHHHHH------HHHHHHHHHHHHHHHhcCCCcEEEEEECCCCCC---HHHHHHHHHHHHHHc
Confidence 12368999999998665442210 000111112233456678864 3444443332 122344445566666
Q ss_pred CCEE
Q psy12304 269 NYQV 272 (620)
Q Consensus 269 GY~v 272 (620)
|..+
T Consensus 357 ~~~~ 360 (396)
T 2as0_A 357 GKFL 360 (396)
T ss_dssp TEEE
T ss_pred CCeE
Confidence 6554
No 33
>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*
Probab=97.35 E-value=0.00017 Score=73.00 Aligned_cols=119 Identities=18% Similarity=0.181 Sum_probs=77.0
Q ss_pred cceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcC------CCcccccchHHHHHHhhcccccccCcCCCC
Q psy12304 118 LKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQ------ECSVIQDDCNLVLKSLLKGHTQHKGVSLPQ 191 (620)
Q Consensus 118 l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p------~~~~~~~di~~~~~~~~~~~~~~~~~~~p~ 191 (620)
-+++|+|||.|++++-+...|. .-++|+|+|+.|.+..+.|.- ...++++|.. .++.
T Consensus 127 ~~VlD~~aG~G~~~i~~a~~g~-~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~----------------~~~~ 189 (278)
T 3k6r_A 127 ELVVDMFAGIGHLSLPIAVYGK-AKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNR----------------DFPG 189 (278)
T ss_dssp CEEEETTCTTTTTTHHHHHHTC-CEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTT----------------TCCC
T ss_pred CEEEEecCcCcHHHHHHHHhcC-CeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHH----------------Hhcc
Confidence 4799999999999998888786 458999999999999998842 1234455543 2334
Q ss_pred CCccceEEecCCCCccccccccchhhhcccccchHHHHHHHhhhcCCcEEE--EccccccccccchhHHHHHHHHHHcCC
Q psy12304 192 KHEVDLIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLSFCDLFQPKYII--LENVTGLVHFNKNEILQCIFHCLLKMN 269 (620)
Q Consensus 192 ~~~vD~i~gGpPCQ~fS~~~~~~~~~~~d~r~~L~~~~~~~i~~~~P~~~v--~ENV~gl~~~~~~~~~~~i~~~l~~~G 269 (620)
.+.+|.|+.++|+-.. ..+...+ +.++|--++ -+||..-.. ....++.+.+...+.|
T Consensus 190 ~~~~D~Vi~~~p~~~~----------------~~l~~a~---~~lk~gG~ih~~~~~~e~~~--~~~~~e~i~~~~~~~g 248 (278)
T 3k6r_A 190 ENIADRILMGYVVRTH----------------EFIPKAL---SIAKDGAIIHYHNTVPEKLM--PREPFETFKRITKEYG 248 (278)
T ss_dssp CSCEEEEEECCCSSGG----------------GGHHHHH---HHEEEEEEEEEEEEEEGGGT--TTTTHHHHHHHHHHTT
T ss_pred ccCCCEEEECCCCcHH----------------HHHHHHH---HHcCCCCEEEEEeeeccccc--chhHHHHHHHHHHHcC
Confidence 4678999999995321 1222333 344554433 355543111 1234555666777899
Q ss_pred CEEEE
Q psy12304 270 YQVTF 274 (620)
Q Consensus 270 Y~v~~ 274 (620)
|.+..
T Consensus 249 ~~v~~ 253 (278)
T 3k6r_A 249 YDVEK 253 (278)
T ss_dssp CEEEE
T ss_pred CcEEE
Confidence 98753
No 34
>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}
Probab=97.35 E-value=0.0004 Score=65.52 Aligned_cols=74 Identities=27% Similarity=0.377 Sum_probs=58.4
Q ss_pred CcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhc-----CCCcccccchHHHHHHhhcccccccCcCCCC
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANF-----QECSVIQDDCNLVLKSLLKGHTQHKGVSLPQ 191 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~-----p~~~~~~~di~~~~~~~~~~~~~~~~~~~p~ 191 (620)
.-++|||+||.|.+++.+...|. ..+.++|+++.+++..+.|. ++..++++|+.++... + .
T Consensus 45 ~~~vLDlgcG~G~~~~~~~~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~------------~-~ 110 (189)
T 3p9n_A 45 GLAVLDLYAGSGALGLEALSRGA-ASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAA------------G-T 110 (189)
T ss_dssp TCEEEEETCTTCHHHHHHHHTTC-SEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHH------------C-C
T ss_pred CCEEEEeCCCcCHHHHHHHHCCC-CeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhh------------c-c
Confidence 35799999999999998887887 56999999999999888875 3456778888776432 1 1
Q ss_pred CCccceEEecCCC
Q psy12304 192 KHEVDLIVAGPPC 204 (620)
Q Consensus 192 ~~~vD~i~gGpPC 204 (620)
.+.+|+|+..||.
T Consensus 111 ~~~fD~i~~~~p~ 123 (189)
T 3p9n_A 111 TSPVDLVLADPPY 123 (189)
T ss_dssp SSCCSEEEECCCT
T ss_pred CCCccEEEECCCC
Confidence 2479999999984
No 35
>1m4z_A Origin recognition complex subunit 1; DNA replication, transcriptional silencing, chromatin, BAH D gene regulation; 2.20A {Saccharomyces cerevisiae} SCOP: b.34.12.1 PDB: 1zhi_A 1zbx_A
Probab=97.22 E-value=0.0004 Score=67.36 Aligned_cols=79 Identities=10% Similarity=0.016 Sum_probs=61.6
Q ss_pred CEEEEEEEeeccCCCCC------Ccc---------c--------cCCCeEEecCceeeeccccccceEEEEEeCCCCChh
Q psy12304 1 MKAHVQWLVRPNDTILG------DKI---------Q--------FDNSTLFLTNACESIDLSVIKKTVCVDFVTNDSSEE 57 (620)
Q Consensus 1 ~~~~v~wfyRped~~~~------~~~---------~--------~d~~eLf~Sd~~~~v~~~~I~gkC~V~~~~~~~~i~ 57 (620)
+.+.|+||+|..|+... .+. + ...||||+|.+.+.|-+.+|+++|.|. +..
T Consensus 86 vei~v~wylR~~Ei~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~nELflTa~l~eI~l~diI~~anVl------s~~ 159 (238)
T 1m4z_A 86 VELWALTYLRWFEVNPLAHYRQFNPDANILNRPLNYYNKLFSETANKNELYLTAELAELQLFNFIRVANVM------DGS 159 (238)
T ss_dssp EEEEEEEEECGGGSCHHHHHHHHCHHHHHSCCCHHHHHHHHHHHSCTTEEEEEEEEEEECGGGEEEEEEEE------CHH
T ss_pred EEEEEEEeecHHHcCchhhhhhcCchhcccccchhhhhhhhhcccccceEEEeccHHHHhHHhhhhheEec------cHH
Confidence 35789999999998762 111 2 689999999999999999999999999 555
Q ss_pred Hhhhc--CCCCCCeEEEEEEEecCCCcceec
Q psy12304 58 EILDN--EHEEKDETIYTEYYRKTKDKHFVQ 86 (620)
Q Consensus 58 ~~~~~--~~~~pd~Fy~~~~y~~~~~~~~~~ 86 (620)
+|... +....+.||++..++ .....|.+
T Consensus 160 Ef~~i~~d~~~~~tFf~R~~cd-~~~~~f~~ 189 (238)
T 1m4z_A 160 KWEVLKGNVDPERDFTVRYICE-PTGEKFVD 189 (238)
T ss_dssp HHHHHGGGCCTTTEEEEEEECC-TTSCCCEE
T ss_pred HHhhhccccccCceEEEEEEEc-CCcCcccc
Confidence 77654 444578999998887 55555653
No 36
>2fl7_A Regulatory protein SIR3; ORC, silencing, chromatin, transcription; 1.85A {Saccharomyces cerevisiae} PDB: 2fvu_A 3tu4_K*
Probab=97.17 E-value=0.00039 Score=67.11 Aligned_cols=81 Identities=14% Similarity=0.005 Sum_probs=58.6
Q ss_pred CEEEEEEEeeccCCCCC------Ccc---------c--------cCCCeEEecCceeeeccccccceEEEEEeCCCCChh
Q psy12304 1 MKAHVQWLVRPNDTILG------DKI---------Q--------FDNSTLFLTNACESIDLSVIKKTVCVDFVTNDSSEE 57 (620)
Q Consensus 1 ~~~~v~wfyRped~~~~------~~~---------~--------~d~~eLf~Sd~~~~v~~~~I~gkC~V~~~~~~~~i~ 57 (620)
+.+.|+||+|..|+... .+. + ...+|||+|.+.+.|-+.+|+++|.|.-...-..+.
T Consensus 86 vei~v~wylR~~Ei~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~nELflTa~l~eI~l~diI~~anVls~~Ef~~l~ 165 (232)
T 2fl7_A 86 VEIWVFSYLRWFELKPKLYYEQFRPDLIKEDHPLEFYKDKFFNEVNKSELYLTAELSEIWLKDFIAVGQILPESQWNDSS 165 (232)
T ss_dssp CEEEEEEEECGGGSCHHHHHHHHCHHHHHTTCCHHHHHHHHHHHSCTTEEEEEEEEEEECGGGEEEECEEECTTTC----
T ss_pred EEEEEEEeecHHHcCchhhhhhcCchhcccccchhhhhhhhhcccccceEEEeccHHHHHHHhhhhheEeccHHHHHHhc
Confidence 46889999999998762 111 2 689999999999999999999999999665432221
Q ss_pred HhhhcCCCCCCeEEEEEEEecCCCcceec
Q psy12304 58 EILDNEHEEKDETIYTEYYRKTKDKHFVQ 86 (620)
Q Consensus 58 ~~~~~~~~~pd~Fy~~~~y~~~~~~~~~~ 86 (620)
- +....+.||++..++ .....|.+
T Consensus 166 ~----d~~~~~tFf~R~~cd-~~~~~f~~ 189 (232)
T 2fl7_A 166 I----DKIEDRDFLVRYACE-PTAEKFVP 189 (232)
T ss_dssp -------CTTTEEEEEEECC-TTSCSCEE
T ss_pred c----cccCCceEEEEEEEc-CCcCcccc
Confidence 1 222468999998887 55555664
No 37
>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}
Probab=97.16 E-value=0.00086 Score=70.65 Aligned_cols=85 Identities=16% Similarity=0.311 Sum_probs=58.0
Q ss_pred cceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhc-----CCCcccccchHHHHHHhhcc-cccc-cCcCCC
Q psy12304 118 LKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANF-----QECSVIQDDCNLVLKSLLKG-HTQH-KGVSLP 190 (620)
Q Consensus 118 l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~-----p~~~~~~~di~~~~~~~~~~-~~~~-~~~~~p 190 (620)
-+++|||||.|++++.+... . .-+.++|+++.|++..+.|. .+..++.+|+.+++...... +... .+..+
T Consensus 215 ~~vLDl~cG~G~~~l~la~~-~-~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~~~~~~~~~~~~l~~~~~- 291 (369)
T 3bt7_A 215 GDLLELYCGNGNFSLALARN-F-DRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDL- 291 (369)
T ss_dssp SEEEEESCTTSHHHHHHGGG-S-SEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHHHHSSCCCCTTGGGSCG-
T ss_pred CEEEEccCCCCHHHHHHHhc-C-CEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHhhcccccccccccc-
Confidence 36999999999999988774 3 45899999999999888774 34567788888775433110 0000 00000
Q ss_pred CCCccceEEecCCCC
Q psy12304 191 QKHEVDLIVAGPPCQ 205 (620)
Q Consensus 191 ~~~~vD~i~gGpPCQ 205 (620)
..+.+|+|+..||..
T Consensus 292 ~~~~fD~Vv~dPPr~ 306 (369)
T 3bt7_A 292 KSYQCETIFVDPPRS 306 (369)
T ss_dssp GGCCEEEEEECCCTT
T ss_pred ccCCCCEEEECcCcc
Confidence 012689999999975
No 38
>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*
Probab=97.14 E-value=0.0024 Score=67.46 Aligned_cols=133 Identities=16% Similarity=0.167 Sum_probs=83.1
Q ss_pred CcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhc-----CCCcccccchHHHHHHhhcccccccCcCCCC
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANF-----QECSVIQDDCNLVLKSLLKGHTQHKGVSLPQ 191 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~-----p~~~~~~~di~~~~~~~~~~~~~~~~~~~p~ 191 (620)
.-++||+|||.|++++.+... . .-+.++|+++.+++.-+.|. .+..++.+|+.+++..... .
T Consensus 210 ~~~VLDlg~G~G~~~~~la~~-~-~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~-----------~ 276 (382)
T 1wxx_A 210 GERALDVFSYAGGFALHLALG-F-REVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEK-----------E 276 (382)
T ss_dssp EEEEEEETCTTTHHHHHHHHH-E-EEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHH-----------T
T ss_pred CCeEEEeeeccCHHHHHHHHh-C-CEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHh-----------c
Confidence 347999999999999998887 3 46899999999999888774 3456777888776543211 1
Q ss_pred CCccceEEecCCCCccccccccchhhhcccccchHHHH-HHHhhhcCCcE--EEEccccccccccchhHHHHHHHHHHcC
Q psy12304 192 KHEVDLIVAGPPCQGFSQLNRARELEKSKLKNGLVFTF-LSFCDLFQPKY--IILENVTGLVHFNKNEILQCIFHCLLKM 268 (620)
Q Consensus 192 ~~~vD~i~gGpPCQ~fS~~~~~~~~~~~d~r~~L~~~~-~~~i~~~~P~~--~v~ENV~gl~~~~~~~~~~~i~~~l~~~ 268 (620)
.+.+|+|+..||+-+.|...... ... .+..+ ..+.+.++|.- ++..|...+. ...+.+.+.+.+.+.
T Consensus 277 ~~~fD~Ii~dpP~~~~~~~~~~~--~~~-----~~~~~l~~~~~~LkpgG~l~~~~~~~~~~---~~~~~~~i~~~~~~~ 346 (382)
T 1wxx_A 277 GERFDLVVLDPPAFAKGKKDVER--AYR-----AYKEVNLRAIKLLKEGGILATASCSHHMT---EPLFYAMVAEAAQDA 346 (382)
T ss_dssp TCCEEEEEECCCCSCCSTTSHHH--HHH-----HHHHHHHHHHHTEEEEEEEEEEECCTTSC---HHHHHHHHHHHHHHT
T ss_pred CCCeeEEEECCCCCCCChhHHHH--HHH-----HHHHHHHHHHHhcCCCCEEEEEECCCCCC---HHHHHHHHHHHHHHc
Confidence 23689999999986655432110 000 11122 23445667853 4444544332 123344455677777
Q ss_pred CCEE
Q psy12304 269 NYQV 272 (620)
Q Consensus 269 GY~v 272 (620)
|..+
T Consensus 347 g~~~ 350 (382)
T 1wxx_A 347 HRLL 350 (382)
T ss_dssp TCCE
T ss_pred CCeE
Confidence 7554
No 39
>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32
Probab=97.12 E-value=0.00062 Score=64.70 Aligned_cols=73 Identities=15% Similarity=0.205 Sum_probs=57.6
Q ss_pred CcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcCCCcccccchHHHHHHhhcccccccCcCCCCCCccc
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQECSVIQDDCNLVLKSLLKGHTQHKGVSLPQKHEVD 196 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p~~~~~~~di~~~~~~~~~~~~~~~~~~~p~~~~vD 196 (620)
.-+++|++||.|.++..+...|. ..+.++|+++.+++..+.|..+..++.+|+.+ +| +.+|
T Consensus 52 ~~~vlD~gcG~G~~~~~l~~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~d~~~----------------~~--~~~D 112 (200)
T 1ne2_A 52 GRSVIDAGTGNGILACGSYLLGA-ESVTAFDIDPDAIETAKRNCGGVNFMVADVSE----------------IS--GKYD 112 (200)
T ss_dssp TSEEEEETCTTCHHHHHHHHTTB-SEEEEEESCHHHHHHHHHHCTTSEEEECCGGG----------------CC--CCEE
T ss_pred CCEEEEEeCCccHHHHHHHHcCC-CEEEEEECCHHHHHHHHHhcCCCEEEECcHHH----------------CC--CCee
Confidence 34799999999999999998886 56999999999999999998766666666642 22 4799
Q ss_pred eEEecCCCCccc
Q psy12304 197 LIVAGPPCQGFS 208 (620)
Q Consensus 197 ~i~gGpPCQ~fS 208 (620)
+|+..||-..++
T Consensus 113 ~v~~~~p~~~~~ 124 (200)
T 1ne2_A 113 TWIMNPPFGSVV 124 (200)
T ss_dssp EEEECCCC----
T ss_pred EEEECCCchhcc
Confidence 999999965543
No 40
>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}
Probab=97.07 E-value=0.0044 Score=60.02 Aligned_cols=155 Identities=14% Similarity=0.130 Sum_probs=89.2
Q ss_pred Ccceeccccc-ccHHHHHHHhc-CCCccEEEEcCchhHHHHHHHhcC----CCcccccchHHHHHHhhcccccccCcCCC
Q psy12304 117 PLKCLDLFSG-CGGLMEGLCQA-GVAKPCWSVELERSEAASYDANFQ----ECSVIQDDCNLVLKSLLKGHTQHKGVSLP 190 (620)
Q Consensus 117 ~l~~~dLFsG-~Gg~s~Gl~~a-G~~~~~~a~e~d~~a~~ty~~N~p----~~~~~~~di~~~~~~~~~~~~~~~~~~~p 190 (620)
..++||++|| .|.+++.+... +. -+.++|+++.+++.-+.|.. +..++.+|+..+ ..++
T Consensus 56 ~~~vLDlG~G~~G~~~~~la~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~-------------~~~~ 120 (230)
T 3evz_A 56 GEVALEIGTGHTAMMALMAEKFFNC--KVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGII-------------KGVV 120 (230)
T ss_dssp SCEEEEECCTTTCHHHHHHHHHHCC--EEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCSS-------------TTTC
T ss_pred CCEEEEcCCCHHHHHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCchhh-------------hhcc
Confidence 4589999999 99999998887 54 58899999999988887753 234444453211 1233
Q ss_pred CCCccceEEecCCCCccccccccchhh-hcc--cccchHHHHHH-HhhhcCCcEEEEccccccccccchhHHHHHHHHHH
Q psy12304 191 QKHEVDLIVAGPPCQGFSQLNRARELE-KSK--LKNGLVFTFLS-FCDLFQPKYIILENVTGLVHFNKNEILQCIFHCLL 266 (620)
Q Consensus 191 ~~~~vD~i~gGpPCQ~fS~~~~~~~~~-~~d--~r~~L~~~~~~-~i~~~~P~~~v~ENV~gl~~~~~~~~~~~i~~~l~ 266 (620)
.+.+|+|+..||+-..+......... ... ....++..+++ +.+.++|.-.++=-++. .......+.+.|.
T Consensus 121 -~~~fD~I~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~-----~~~~~~~~~~~l~ 194 (230)
T 3evz_A 121 -EGTFDVIFSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPD-----KEKLLNVIKERGI 194 (230)
T ss_dssp -CSCEEEEEECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEES-----CHHHHHHHHHHHH
T ss_pred -cCceeEEEECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecc-----cHhHHHHHHHHHH
Confidence 26899999999986655421100000 000 00122344444 34456886544322221 1234677888899
Q ss_pred cCCCEEEEEEEecCCCCCcccccEEEEEEecC
Q psy12304 267 KMNYQVTFDVLQSGNYGVAQSRNRVVILASKP 298 (620)
Q Consensus 267 ~~GY~v~~~~l~A~~yGvPQ~R~R~fivg~~~ 298 (620)
+.||.+....+. .-.+.+.+++..+.
T Consensus 195 ~~g~~~~~~~~~------~g~~~~~~l~f~~~ 220 (230)
T 3evz_A 195 KLGYSVKDIKFK------VGTRWRHSLIFFKG 220 (230)
T ss_dssp HTTCEEEEEEEC------CCC-CEEEEEEECC
T ss_pred HcCCceEEEEec------CCCeEEEEEEEecc
Confidence 999987655442 22455666666654
No 41
>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}
Probab=97.06 E-value=0.006 Score=56.49 Aligned_cols=138 Identities=16% Similarity=0.136 Sum_probs=86.3
Q ss_pred cceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcCCCcccccchHHHHHHhhcccccccCcCCCCCCccce
Q psy12304 118 LKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQECSVIQDDCNLVLKSLLKGHTQHKGVSLPQKHEVDL 197 (620)
Q Consensus 118 l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p~~~~~~~di~~~~~~~~~~~~~~~~~~~p~~~~vD~ 197 (620)
-++||+.||.|.++..+...| .+.++|+++.+++. .++..++++|+.+. ++ .+.+|+
T Consensus 25 ~~vLD~GcG~G~~~~~l~~~~---~v~gvD~s~~~~~~----~~~~~~~~~d~~~~---------------~~-~~~fD~ 81 (170)
T 3q87_B 25 KIVLDLGTSTGVITEQLRKRN---TVVSTDLNIRALES----HRGGNLVRADLLCS---------------IN-QESVDV 81 (170)
T ss_dssp CEEEEETCTTCHHHHHHTTTS---EEEEEESCHHHHHT----CSSSCEEECSTTTT---------------BC-GGGCSE
T ss_pred CeEEEeccCccHHHHHHHhcC---cEEEEECCHHHHhc----ccCCeEEECChhhh---------------cc-cCCCCE
Confidence 389999999999999999888 58999999999988 34456666665321 11 257999
Q ss_pred EEecCCCCccccccccchhhhcccccchHHHHHHHhhhcCCcE--EEEccccccccccchhHHHHHHHHHHcCCCEEEEE
Q psy12304 198 IVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLSFCDLFQPKY--IILENVTGLVHFNKNEILQCIFHCLLKMNYQVTFD 275 (620)
Q Consensus 198 i~gGpPCQ~fS~~~~~~~~~~~d~r~~L~~~~~~~i~~~~P~~--~v~ENV~gl~~~~~~~~~~~i~~~l~~~GY~v~~~ 275 (620)
|+..||-...+....... ......++..+++.+ |.- ++.++.. ...+.+.+.|.+.||.+...
T Consensus 82 i~~n~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l----pgG~l~~~~~~~--------~~~~~l~~~l~~~gf~~~~~ 146 (170)
T 3q87_B 82 VVFNPPYVPDTDDPIIGG---GYLGREVIDRFVDAV----TVGMLYLLVIEA--------NRPKEVLARLEERGYGTRIL 146 (170)
T ss_dssp EEECCCCBTTCCCTTTBC---CGGGCHHHHHHHHHC----CSSEEEEEEEGG--------GCHHHHHHHHHHTTCEEEEE
T ss_pred EEECCCCccCCccccccC---CcchHHHHHHHHhhC----CCCEEEEEEecC--------CCHHHHHHHHHHCCCcEEEE
Confidence 999988655443211000 011123444555544 643 3333222 22556777888999987544
Q ss_pred EEecCCCCCcccccEEEEEEecCC
Q psy12304 276 VLQSGNYGVAQSRNRVVILASKPG 299 (620)
Q Consensus 276 ~l~A~~yGvPQ~R~R~fivg~~~~ 299 (620)
.-.- + ..+|++.+=..++
T Consensus 147 ~~~~--~----~~e~~~~~~~~~~ 164 (170)
T 3q87_B 147 KVRK--I----LGETVYIIKGEKS 164 (170)
T ss_dssp EEEE--C----SSSEEEEEEEECC
T ss_pred Eeec--c----CCceEEEEEEecc
Confidence 4332 2 3468887766543
No 42
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Probab=97.03 E-value=0.001 Score=76.05 Aligned_cols=77 Identities=26% Similarity=0.364 Sum_probs=59.6
Q ss_pred cceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhc-------CCCcccccchHHHHHHhhcccccccCcCCC
Q psy12304 118 LKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANF-------QECSVIQDDCNLVLKSLLKGHTQHKGVSLP 190 (620)
Q Consensus 118 l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~-------p~~~~~~~di~~~~~~~~~~~~~~~~~~~p 190 (620)
-++||||||.|++++.+...|. .-+.++|+++.|++.-+.|. .+..++++|+.+.+..
T Consensus 541 ~~VLDlg~GtG~~sl~aa~~ga-~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~-------------- 605 (703)
T 3v97_A 541 KDFLNLFSYTGSATVHAGLGGA-RSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLRE-------------- 605 (703)
T ss_dssp CEEEEESCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHH--------------
T ss_pred CcEEEeeechhHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHh--------------
Confidence 4799999999999999988887 66999999999999888874 1355677888776432
Q ss_pred CCCccceEEecCCCCcccc
Q psy12304 191 QKHEVDLIVAGPPCQGFSQ 209 (620)
Q Consensus 191 ~~~~vD~i~gGpPCQ~fS~ 209 (620)
..+.+|+|+.-|||-+-|.
T Consensus 606 ~~~~fD~Ii~DPP~f~~~~ 624 (703)
T 3v97_A 606 ANEQFDLIFIDPPTFSNSK 624 (703)
T ss_dssp CCCCEEEEEECCCSBC---
T ss_pred cCCCccEEEECCccccCCc
Confidence 1247999999999954443
No 43
>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}
Probab=97.00 E-value=0.0026 Score=68.69 Aligned_cols=81 Identities=22% Similarity=0.248 Sum_probs=60.9
Q ss_pred CcceecccccccHHHHHHHhc--CCCccEEEEcCchhHHHHHHHhc-----CCCcccccchHHHHHHhhcccccccCcCC
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQA--GVAKPCWSVELERSEAASYDANF-----QECSVIQDDCNLVLKSLLKGHTQHKGVSL 189 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~a--G~~~~~~a~e~d~~a~~ty~~N~-----p~~~~~~~di~~~~~~~~~~~~~~~~~~~ 189 (620)
.-+|||++||.||.++-+... +- -.++|+|+++.+++..+.|. .+..+.++|..++... .
T Consensus 106 g~~VLDlcaGpGgkt~~lA~~~~~~-g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~~~------------~ 172 (456)
T 3m4x_A 106 GEKVLDLCAAPGGKSTQLAAQMKGK-GLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVPH------------F 172 (456)
T ss_dssp TCEEEESSCTTCHHHHHHHHHHTTC-SEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHHHH------------H
T ss_pred CCEEEEECCCcCHHHHHHHHHcCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhhh------------c
Confidence 458999999999999888753 22 25889999999999988874 3445667787665321 1
Q ss_pred CCCCccceEEecCCCCccccccc
Q psy12304 190 PQKHEVDLIVAGPPCQGFSQLNR 212 (620)
Q Consensus 190 p~~~~vD~i~gGpPCQ~fS~~~~ 212 (620)
.+.+|+|+.-+||.|.....+
T Consensus 173 --~~~FD~Il~DaPCSg~G~~rr 193 (456)
T 3m4x_A 173 --SGFFDRIVVDAPCSGEGMFRK 193 (456)
T ss_dssp --TTCEEEEEEECCCCCGGGTTT
T ss_pred --cccCCEEEECCCCCCcccccc
Confidence 247999999999998876654
No 44
>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46
Probab=96.98 E-value=0.0013 Score=61.11 Aligned_cols=73 Identities=26% Similarity=0.422 Sum_probs=56.3
Q ss_pred CcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcC------CCcccccchHHHHHHhhcccccccCcCCC
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQ------ECSVIQDDCNLVLKSLLKGHTQHKGVSLP 190 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p------~~~~~~~di~~~~~~~~~~~~~~~~~~~p 190 (620)
.-+++|++||.|.+++.+...|. ..+.++|+++.+++..+.|.. +..++.+|+.+.+.. .
T Consensus 32 ~~~vLDlGcG~G~~~~~l~~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~------------~- 97 (177)
T 2esr_A 32 GGRVLDLFAGSGGLAIEAVSRGM-SAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDC------------L- 97 (177)
T ss_dssp SCEEEEETCTTCHHHHHHHHTTC-CEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHH------------B-
T ss_pred CCeEEEeCCCCCHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHh------------h-
Confidence 34799999999999999988876 568999999999999888752 345667787664321 1
Q ss_pred CCCccceEEecCCC
Q psy12304 191 QKHEVDLIVAGPPC 204 (620)
Q Consensus 191 ~~~~vD~i~gGpPC 204 (620)
.+.+|+|+..+|.
T Consensus 98 -~~~fD~i~~~~~~ 110 (177)
T 2esr_A 98 -TGRFDLVFLDPPY 110 (177)
T ss_dssp -CSCEEEEEECCSS
T ss_pred -cCCCCEEEECCCC
Confidence 1358999999884
No 45
>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*
Probab=96.98 E-value=0.0042 Score=67.22 Aligned_cols=82 Identities=17% Similarity=0.204 Sum_probs=60.8
Q ss_pred CcceecccccccHHHHHHHhc-CCCccEEEEcCchhHHHHHHHhcC----CCcccccchHHHHHHhhcccccccCcCCCC
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQA-GVAKPCWSVELERSEAASYDANFQ----ECSVIQDDCNLVLKSLLKGHTQHKGVSLPQ 191 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~a-G~~~~~~a~e~d~~a~~ty~~N~p----~~~~~~~di~~~~~~~~~~~~~~~~~~~p~ 191 (620)
.-+|||++||.||.++-+... +-.-.++|+|+++.+++..+.|.. ...+.++|..++... .
T Consensus 102 g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~v~~~~~Da~~l~~~--------------~ 167 (464)
T 3m6w_A 102 GERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAPLAVTQAPPRALAEA--------------F 167 (464)
T ss_dssp TCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCCCEEECSCHHHHHHH--------------H
T ss_pred CCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCeEEEEECCHHHhhhh--------------c
Confidence 458999999999999888753 211258999999999999888742 155667787765321 1
Q ss_pred CCccceEEecCCCCccccccc
Q psy12304 192 KHEVDLIVAGPPCQGFSQLNR 212 (620)
Q Consensus 192 ~~~vD~i~gGpPCQ~fS~~~~ 212 (620)
.+.+|+|+.-+||.+.....+
T Consensus 168 ~~~FD~Il~D~PcSg~G~~rr 188 (464)
T 3m6w_A 168 GTYFHRVLLDAPCSGEGMFRK 188 (464)
T ss_dssp CSCEEEEEEECCCCCGGGTTT
T ss_pred cccCCEEEECCCcCCcccccc
Confidence 247999999999998876654
No 46
>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46
Probab=96.88 E-value=0.002 Score=58.92 Aligned_cols=75 Identities=19% Similarity=0.237 Sum_probs=58.2
Q ss_pred cceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcC----CCcccccchHHHHHHhhcccccccCcCCCCCC
Q psy12304 118 LKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQ----ECSVIQDDCNLVLKSLLKGHTQHKGVSLPQKH 193 (620)
Q Consensus 118 l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p----~~~~~~~di~~~~~~~~~~~~~~~~~~~p~~~ 193 (620)
-+++|++||.|.++..+...|. + +.++|+++.+++..+.|.. +..++++|+.+.+..... ..+
T Consensus 43 ~~vLD~GcG~G~~~~~l~~~~~-~-v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~-----------~~~ 109 (171)
T 1ws6_A 43 GRFLDPFAGSGAVGLEAASEGW-E-AVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKA-----------QGE 109 (171)
T ss_dssp CEEEEETCSSCHHHHHHHHTTC-E-EEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHH-----------TTC
T ss_pred CeEEEeCCCcCHHHHHHHHCCC-e-EEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhc-----------cCC
Confidence 4799999999999999999997 6 9999999999988887754 566778888765432110 113
Q ss_pred ccceEEecCCCC
Q psy12304 194 EVDLIVAGPPCQ 205 (620)
Q Consensus 194 ~vD~i~gGpPCQ 205 (620)
.+|+|+..+|..
T Consensus 110 ~~D~i~~~~~~~ 121 (171)
T 1ws6_A 110 RFTVAFMAPPYA 121 (171)
T ss_dssp CEEEEEECCCTT
T ss_pred ceEEEEECCCCc
Confidence 689999998853
No 47
>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}
Probab=96.85 E-value=0.004 Score=62.57 Aligned_cols=71 Identities=20% Similarity=0.192 Sum_probs=52.4
Q ss_pred cceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhc-----CCCcccccchHHHHHHhhcccccccCcCCCCC
Q psy12304 118 LKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANF-----QECSVIQDDCNLVLKSLLKGHTQHKGVSLPQK 192 (620)
Q Consensus 118 l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~-----p~~~~~~~di~~~~~~~~~~~~~~~~~~~p~~ 192 (620)
-+++|+|||.|++++-+...+-..-++++|+++.|++..+.|. .+..++++|+.++ +..
T Consensus 121 ~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~----------------~~~ 184 (272)
T 3a27_A 121 EVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDV----------------ELK 184 (272)
T ss_dssp CEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGC----------------CCT
T ss_pred CEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHc----------------Ccc
Confidence 4799999999999998887632135899999999999888875 2334455555321 223
Q ss_pred CccceEEecCCC
Q psy12304 193 HEVDLIVAGPPC 204 (620)
Q Consensus 193 ~~vD~i~gGpPC 204 (620)
+.+|+|+..||.
T Consensus 185 ~~~D~Vi~d~p~ 196 (272)
T 3a27_A 185 DVADRVIMGYVH 196 (272)
T ss_dssp TCEEEEEECCCS
T ss_pred CCceEEEECCcc
Confidence 479999999985
No 48
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0
Probab=96.82 E-value=0.011 Score=56.13 Aligned_cols=122 Identities=12% Similarity=0.105 Sum_probs=77.8
Q ss_pred CcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhc-----CCCcccccchHHHHHHhhcccccccCcCCCC
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANF-----QECSVIQDDCNLVLKSLLKGHTQHKGVSLPQ 191 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~-----p~~~~~~~di~~~~~~~~~~~~~~~~~~~p~ 191 (620)
..+++|+.||.|.++..+...|-...+.++|+++.+++.-+.|. ++..++.+|+.+ .++.
T Consensus 41 ~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~---------------~~~~ 105 (204)
T 3e05_A 41 DLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPE---------------GLDD 105 (204)
T ss_dssp TCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTT---------------TCTT
T ss_pred CCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhh---------------hhhc
Confidence 45899999999999999988762135899999999998888775 233444444421 1222
Q ss_pred CCccceEEecCCCCccccccccchhhhcccccchHHHHHHHhhhcCCcEEEEccccccccccchhHHHHHHHHHHcCCCE
Q psy12304 192 KHEVDLIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLSFCDLFQPKYIILENVTGLVHFNKNEILQCIFHCLLKMNYQ 271 (620)
Q Consensus 192 ~~~vD~i~gGpPCQ~fS~~~~~~~~~~~d~r~~L~~~~~~~i~~~~P~~~v~ENV~gl~~~~~~~~~~~i~~~l~~~GY~ 271 (620)
.+.+|+|+.+.+.. . ...++. .+.+.++|.-.++=..... .....+...|.+.||.
T Consensus 106 ~~~~D~i~~~~~~~-----~----------~~~~l~---~~~~~LkpgG~l~~~~~~~------~~~~~~~~~l~~~g~~ 161 (204)
T 3e05_A 106 LPDPDRVFIGGSGG-----M----------LEEIID---AVDRRLKSEGVIVLNAVTL------DTLTKAVEFLEDHGYM 161 (204)
T ss_dssp SCCCSEEEESCCTT-----C----------HHHHHH---HHHHHCCTTCEEEEEECBH------HHHHHHHHHHHHTTCE
T ss_pred CCCCCEEEECCCCc-----C----------HHHHHH---HHHHhcCCCeEEEEEeccc------ccHHHHHHHHHHCCCc
Confidence 24789999876542 0 011222 3345678865444332222 3466778888999986
Q ss_pred EEEEEE
Q psy12304 272 VTFDVL 277 (620)
Q Consensus 272 v~~~~l 277 (620)
+....+
T Consensus 162 ~~~~~~ 167 (204)
T 3e05_A 162 VEVACV 167 (204)
T ss_dssp EEEEEE
T ss_pred eeEEEE
Confidence 654443
No 49
>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*
Probab=96.82 E-value=0.0013 Score=69.67 Aligned_cols=74 Identities=18% Similarity=0.247 Sum_probs=56.5
Q ss_pred CcceecccccccHHHHHHHh--cCCCccEEEEcCchhHHHHHHHhcC-----C--CcccccchHHHHH-HhhcccccccC
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQ--AGVAKPCWSVELERSEAASYDANFQ-----E--CSVIQDDCNLVLK-SLLKGHTQHKG 186 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~--aG~~~~~~a~e~d~~a~~ty~~N~p-----~--~~~~~~di~~~~~-~~~~~~~~~~~ 186 (620)
..++||||||.|++++-+.. .|. .-++++|+++.|++..+.|.. + ..++++|+.+++. .
T Consensus 53 g~~VLDlfaGtG~~sl~aa~~~~ga-~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~---------- 121 (392)
T 3axs_A 53 PVKVADPLSASGIRAIRFLLETSCV-EKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKE---------- 121 (392)
T ss_dssp CEEEEESSCTTSHHHHHHHHHCSCE-EEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSC----------
T ss_pred CCEEEECCCcccHHHHHHHHhCCCC-CEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHh----------
Confidence 35799999999999987665 364 568999999999999988742 2 5567788877643 2
Q ss_pred cCCCCCCccceEEecCCCC
Q psy12304 187 VSLPQKHEVDLIVAGPPCQ 205 (620)
Q Consensus 187 ~~~p~~~~vD~i~gGpPCQ 205 (620)
. .+.+|+|+.-|+|.
T Consensus 122 --~--~~~fD~V~lDP~g~ 136 (392)
T 3axs_A 122 --W--GFGFDYVDLDPFGT 136 (392)
T ss_dssp --C--SSCEEEEEECCSSC
T ss_pred --h--CCCCcEEEECCCcC
Confidence 1 23689999999764
No 50
>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53
Probab=96.74 E-value=0.0081 Score=57.59 Aligned_cols=131 Identities=10% Similarity=0.084 Sum_probs=79.7
Q ss_pred cceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhc-----CCCcccccchHHHHHHhhcccccccCcCCCCC
Q psy12304 118 LKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANF-----QECSVIQDDCNLVLKSLLKGHTQHKGVSLPQK 192 (620)
Q Consensus 118 l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~-----p~~~~~~~di~~~~~~~~~~~~~~~~~~~p~~ 192 (620)
-++||+.||.|.++..+....-..-+.++|+++.+++.-+.|. ++..++.+|+.++ ...++ .
T Consensus 43 ~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~------------~~~~~-~ 109 (214)
T 1yzh_A 43 PIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDL------------TDYFE-D 109 (214)
T ss_dssp CEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCG------------GGTSC-T
T ss_pred CeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHH------------HhhcC-C
Confidence 4799999999999998887632125889999999998877764 3445555665432 01122 3
Q ss_pred CccceEEecCCCCccccccccchhhhcccccchHHHHHH-HhhhcCCcE-EEEccccccccccchhHHHHHHHHHHcCCC
Q psy12304 193 HEVDLIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLS-FCDLFQPKY-IILENVTGLVHFNKNEILQCIFHCLLKMNY 270 (620)
Q Consensus 193 ~~vD~i~gGpPCQ~fS~~~~~~~~~~~d~r~~L~~~~~~-~i~~~~P~~-~v~ENV~gl~~~~~~~~~~~i~~~l~~~GY 270 (620)
+.+|+|+..+|..-... . ...+......+++ +.+.++|.- ++++- .....+..+++.|.+.||
T Consensus 110 ~~~D~i~~~~~~~~~~~-~-------~~~~~~~~~~~l~~~~~~LkpgG~l~~~~-------~~~~~~~~~~~~~~~~g~ 174 (214)
T 1yzh_A 110 GEIDRLYLNFSDPWPKK-R-------HEKRRLTYKTFLDTFKRILPENGEIHFKT-------DNRGLFEYSLVSFSQYGM 174 (214)
T ss_dssp TCCSEEEEESCCCCCSG-G-------GGGGSTTSHHHHHHHHHHSCTTCEEEEEE-------SCHHHHHHHHHHHHHHTC
T ss_pred CCCCEEEEECCCCcccc-c-------hhhhccCCHHHHHHHHHHcCCCcEEEEEe-------CCHHHHHHHHHHHHHCCC
Confidence 57999999987543221 1 0111112233333 334578864 43431 122456777888888899
Q ss_pred EEEEEE
Q psy12304 271 QVTFDV 276 (620)
Q Consensus 271 ~v~~~~ 276 (620)
.+....
T Consensus 175 ~~~~~~ 180 (214)
T 1yzh_A 175 KLNGVW 180 (214)
T ss_dssp EEEEEE
T ss_pred eeeecc
Confidence 875443
No 51
>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46
Probab=96.74 E-value=0.0022 Score=59.79 Aligned_cols=75 Identities=27% Similarity=0.414 Sum_probs=56.4
Q ss_pred CcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhc------CCCcccccchHHHHHHhhcccccccCcCCC
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANF------QECSVIQDDCNLVLKSLLKGHTQHKGVSLP 190 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~------p~~~~~~~di~~~~~~~~~~~~~~~~~~~p 190 (620)
.-++||++||.|++++.+...|. .-+.++|+++.+++..+.|. ++..++.+|+.+.+.....
T Consensus 45 ~~~vLD~GcG~G~~~~~~~~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~----------- 112 (187)
T 2fhp_A 45 GGMALDLYSGSGGLAIEAVSRGM-DKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYE----------- 112 (187)
T ss_dssp SCEEEETTCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHH-----------
T ss_pred CCCEEEeCCccCHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHh-----------
Confidence 34899999999999998877776 56899999999998888775 2356677888765432110
Q ss_pred CCCccceEEecCC
Q psy12304 191 QKHEVDLIVAGPP 203 (620)
Q Consensus 191 ~~~~vD~i~gGpP 203 (620)
..+.+|+|+..+|
T Consensus 113 ~~~~fD~i~~~~~ 125 (187)
T 2fhp_A 113 EKLQFDLVLLDPP 125 (187)
T ss_dssp TTCCEEEEEECCC
T ss_pred cCCCCCEEEECCC
Confidence 1247899999888
No 52
>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38
Probab=96.67 E-value=0.0041 Score=63.92 Aligned_cols=81 Identities=15% Similarity=0.203 Sum_probs=58.8
Q ss_pred CcceecccccccHHHHHHHhcC-CCccEEEEcCchhHHHHHHHhc-----CCCcccccchHHHHHHhhcccccccCcCCC
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQAG-VAKPCWSVELERSEAASYDANF-----QECSVIQDDCNLVLKSLLKGHTQHKGVSLP 190 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~aG-~~~~~~a~e~d~~a~~ty~~N~-----p~~~~~~~di~~~~~~~~~~~~~~~~~~~p 190 (620)
.-++||++||.|+.+.-+.+.. -...+.|+|+++.+++..+.|. ++..++++|+.++. .
T Consensus 119 g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~-------------~-- 183 (315)
T 1ixk_A 119 GEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIG-------------E-- 183 (315)
T ss_dssp TCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGG-------------G--
T ss_pred CCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhcc-------------c--
Confidence 3479999999999998887642 1125899999999998888774 34455666664331 0
Q ss_pred CCCccceEEecCCCCccccccc
Q psy12304 191 QKHEVDLIVAGPPCQGFSQLNR 212 (620)
Q Consensus 191 ~~~~vD~i~gGpPCQ~fS~~~~ 212 (620)
..+.+|+|+..+||.+.....+
T Consensus 184 ~~~~fD~Il~d~Pcsg~g~~~~ 205 (315)
T 1ixk_A 184 LNVEFDKILLDAPCTGSGTIHK 205 (315)
T ss_dssp GCCCEEEEEEECCTTSTTTCC-
T ss_pred ccccCCEEEEeCCCCCcccccC
Confidence 1247999999999988776543
No 53
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}
Probab=96.66 E-value=0.035 Score=52.97 Aligned_cols=69 Identities=22% Similarity=0.232 Sum_probs=54.7
Q ss_pred CcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcC-CCcccccchHHHHHHhhcccccccCcCCCCCCcc
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQ-ECSVIQDDCNLVLKSLLKGHTQHKGVSLPQKHEV 195 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p-~~~~~~~di~~~~~~~~~~~~~~~~~~~p~~~~v 195 (620)
..++||+-||.|.++..+...|. -+.++|+++.+++..+.+.+ +..++.+|+.+ +|..+.+
T Consensus 46 ~~~vLDiGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~d~~~----------------~~~~~~f 107 (220)
T 3hnr_A 46 FGNVLEFGVGTGNLTNKLLLAGR--TVYGIEPSREMRMIAKEKLPKEFSITEGDFLS----------------FEVPTSI 107 (220)
T ss_dssp CSEEEEECCTTSHHHHHHHHTTC--EEEEECSCHHHHHHHHHHSCTTCCEESCCSSS----------------CCCCSCC
T ss_pred CCeEEEeCCCCCHHHHHHHhCCC--eEEEEeCCHHHHHHHHHhCCCceEEEeCChhh----------------cCCCCCe
Confidence 45899999999999999999886 48899999999999999987 55566666532 2223689
Q ss_pred ceEEecCC
Q psy12304 196 DLIVAGPP 203 (620)
Q Consensus 196 D~i~gGpP 203 (620)
|+|+....
T Consensus 108 D~v~~~~~ 115 (220)
T 3hnr_A 108 DTIVSTYA 115 (220)
T ss_dssp SEEEEESC
T ss_pred EEEEECcc
Confidence 99998643
No 54
>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*
Probab=96.60 E-value=0.0059 Score=56.90 Aligned_cols=137 Identities=6% Similarity=-0.053 Sum_probs=73.6
Q ss_pred CcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhc-----CCCcccccchHHHHHHhhcccccccCcCCCC
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANF-----QECSVIQDDCNLVLKSLLKGHTQHKGVSLPQ 191 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~-----p~~~~~~~di~~~~~~~~~~~~~~~~~~~p~ 191 (620)
.-++||+.||.|.++.-+...|. -++++|+++.+++.-+.|. ++..++.+|...+ ...+
T Consensus 23 ~~~vLDiGcG~G~~~~~la~~~~--~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l-------------~~~~- 86 (185)
T 3mti_A 23 ESIVVDATMGNGNDTAFLAGLSK--KVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENL-------------DHYV- 86 (185)
T ss_dssp TCEEEESCCTTSHHHHHHHTTSS--EEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGG-------------GGTC-
T ss_pred CCEEEEEcCCCCHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHH-------------Hhhc-
Confidence 34799999999999999998865 5899999999998887775 3344444444322 1122
Q ss_pred CCccceEEecCCCCccccccccchhhhcccccchHHHHHHHhhhcCCcEEEE--ccccccccccchhHHHHHHHHHHcCC
Q psy12304 192 KHEVDLIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLSFCDLFQPKYIIL--ENVTGLVHFNKNEILQCIFHCLLKMN 269 (620)
Q Consensus 192 ~~~vD~i~gGpPCQ~fS~~~~~~~~~~~d~r~~L~~~~~~~i~~~~P~~~v~--ENV~gl~~~~~~~~~~~i~~~l~~~G 269 (620)
.+.+|+|+..++.-..+...... . .......+-++.+.++|.-.++ .....-........+..++..|...+
T Consensus 87 ~~~fD~v~~~~~~~~~~~~~~~~--~----~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l~~~~ 160 (185)
T 3mti_A 87 REPIRAAIFNLGYLPSADKSVIT--K----PHTTLEAIEKILDRLEVGGRLAIMIYYGHDGGDMEKDAVLEYVIGLDQRV 160 (185)
T ss_dssp CSCEEEEEEEEC-------------C----HHHHHHHHHHHHHHEEEEEEEEEEEC------CHHHHHHHHHHHHSCTTT
T ss_pred cCCcCEEEEeCCCCCCcchhccc--C----hhhHHHHHHHHHHhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHhCCCce
Confidence 35799998875433322111100 0 0011122234456678865332 22111101111234555666666677
Q ss_pred CEEEEE
Q psy12304 270 YQVTFD 275 (620)
Q Consensus 270 Y~v~~~ 275 (620)
|.+...
T Consensus 161 ~~~~~~ 166 (185)
T 3mti_A 161 FTAMLY 166 (185)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 876543
No 55
>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38
Probab=96.55 E-value=0.0022 Score=65.82 Aligned_cols=83 Identities=23% Similarity=0.332 Sum_probs=54.7
Q ss_pred CcceecccccccHHHHHHHhc--CCCccEEEEcCchhHHHHHHHhcC-----CCcccccchHHHHHHhhcccccccCcCC
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQA--GVAKPCWSVELERSEAASYDANFQ-----ECSVIQDDCNLVLKSLLKGHTQHKGVSL 189 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~a--G~~~~~~a~e~d~~a~~ty~~N~p-----~~~~~~~di~~~~~~~~~~~~~~~~~~~ 189 (620)
.-+|||++||.||.++-+... +- ..++|+|+++.+++..+.|.. +..++.+|..++. ...
T Consensus 103 g~~VLDlcaG~G~kt~~la~~~~~~-g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~------------~~~ 169 (309)
T 2b9e_A 103 GSHVIDACAAPGNKTSHLAALLKNQ-GKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVS------------PSD 169 (309)
T ss_dssp TCEEEESSCTTCHHHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSC------------TTC
T ss_pred CCEEEEeCCChhHHHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcC------------ccc
Confidence 347999999999999887763 32 358999999999999988852 3344555553320 011
Q ss_pred CCCCccceEEecCCCCccccccc
Q psy12304 190 PQKHEVDLIVAGPPCQGFSQLNR 212 (620)
Q Consensus 190 p~~~~vD~i~gGpPCQ~fS~~~~ 212 (620)
+..+.+|.|+.-+||.++....+
T Consensus 170 ~~~~~fD~Vl~D~PcSg~G~~~r 192 (309)
T 2b9e_A 170 PRYHEVHYILLDPSCSGSGMPSR 192 (309)
T ss_dssp GGGTTEEEEEECCCCCC------
T ss_pred cccCCCCEEEEcCCcCCCCCCcc
Confidence 11146899999999998776543
No 56
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}
Probab=96.55 E-value=0.043 Score=52.25 Aligned_cols=75 Identities=24% Similarity=0.294 Sum_probs=56.5
Q ss_pred CcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcCCCcccccchHHHHHHhhcccccccCcCCCCCCccc
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQECSVIQDDCNLVLKSLLKGHTQHKGVSLPQKHEVD 196 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p~~~~~~~di~~~~~~~~~~~~~~~~~~~p~~~~vD 196 (620)
..++||+-||.|.++.-+...|. + +.++|+++.+++..+.+ +...+...|+.++.. ...+..+.+|
T Consensus 53 ~~~vLdiG~G~G~~~~~l~~~~~-~-v~~vD~s~~~~~~a~~~-~~~~~~~~~~~~~~~-----------~~~~~~~~fD 118 (227)
T 3e8s_A 53 PERVLDLGCGEGWLLRALADRGI-E-AVGVDGDRTLVDAARAA-GAGEVHLASYAQLAE-----------AKVPVGKDYD 118 (227)
T ss_dssp CSEEEEETCTTCHHHHHHHTTTC-E-EEEEESCHHHHHHHHHT-CSSCEEECCHHHHHT-----------TCSCCCCCEE
T ss_pred CCEEEEeCCCCCHHHHHHHHCCC-E-EEEEcCCHHHHHHHHHh-cccccchhhHHhhcc-----------cccccCCCcc
Confidence 36899999999999999999987 4 88999999999998888 556666777766521 1122234599
Q ss_pred eEEecCCCC
Q psy12304 197 LIVAGPPCQ 205 (620)
Q Consensus 197 ~i~gGpPCQ 205 (620)
+|+......
T Consensus 119 ~v~~~~~l~ 127 (227)
T 3e8s_A 119 LICANFALL 127 (227)
T ss_dssp EEEEESCCC
T ss_pred EEEECchhh
Confidence 999875543
No 57
>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}
Probab=96.54 E-value=0.011 Score=63.72 Aligned_cols=81 Identities=11% Similarity=0.215 Sum_probs=57.5
Q ss_pred cceecccccccHHHHHHHhc--CCCccEEEEcCchhHHHHHHHhc-----CCCcccccchHHHHHHhhcccccccCcCCC
Q psy12304 118 LKCLDLFSGCGGLMEGLCQA--GVAKPCWSVELERSEAASYDANF-----QECSVIQDDCNLVLKSLLKGHTQHKGVSLP 190 (620)
Q Consensus 118 l~~~dLFsG~Gg~s~Gl~~a--G~~~~~~a~e~d~~a~~ty~~N~-----p~~~~~~~di~~~~~~~~~~~~~~~~~~~p 190 (620)
-+++|++||.||.+.-+... +- ..++|+|+++.+++..+.|. ++..+.++|+.++ ...++
T Consensus 261 ~~VLDlgaG~G~~t~~la~~~~~~-~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~------------~~~~~ 327 (450)
T 2yxl_A 261 ETVVDLAAAPGGKTTHLAELMKNK-GKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKA------------PEIIG 327 (450)
T ss_dssp CEEEESSCTTCHHHHHHHHHTTTC-SEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCC------------SSSSC
T ss_pred CEEEEeCCCccHHHHHHHHHcCCC-CEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhc------------chhhc
Confidence 48999999999999888763 32 25899999999999888874 2334444454221 01111
Q ss_pred CCCccceEEecCCCCccccccc
Q psy12304 191 QKHEVDLIVAGPPCQGFSQLNR 212 (620)
Q Consensus 191 ~~~~vD~i~gGpPCQ~fS~~~~ 212 (620)
.+.+|+|+.-+||.++....+
T Consensus 328 -~~~fD~Vl~D~Pcsg~g~~~~ 348 (450)
T 2yxl_A 328 -EEVADKVLLDAPCTSSGTIGK 348 (450)
T ss_dssp -SSCEEEEEEECCCCCGGGTTT
T ss_pred -cCCCCEEEEcCCCCCCeeecc
Confidence 256999999999998877654
No 58
>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}
Probab=96.52 E-value=0.019 Score=54.87 Aligned_cols=116 Identities=15% Similarity=0.099 Sum_probs=75.2
Q ss_pred CcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhc-----C-CCcccccchHHHHHHhhcccccccCcCCC
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANF-----Q-ECSVIQDDCNLVLKSLLKGHTQHKGVSLP 190 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~-----p-~~~~~~~di~~~~~~~~~~~~~~~~~~~p 190 (620)
.-+++|+.||.|.+++-+...|. .++++|+++.+++.-+.|. + +..++.+|+.+. ++
T Consensus 56 ~~~vLDlGcG~G~~~~~la~~~~--~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~---------------~~ 118 (204)
T 3njr_A 56 GELLWDIGGGSGSVSVEWCLAGG--RAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAA---------------LA 118 (204)
T ss_dssp TCEEEEETCTTCHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGG---------------GT
T ss_pred CCEEEEecCCCCHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhh---------------cc
Confidence 35799999999999999888865 4899999999998887774 3 344555665431 12
Q ss_pred CCCccceEEecCCCCccccccccchhhhcccccchHHHHHHHhhhcCCcEEEEccccccccccchhHHHHHHHHHHcCCC
Q psy12304 191 QKHEVDLIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLSFCDLFQPKYIILENVTGLVHFNKNEILQCIFHCLLKMNY 270 (620)
Q Consensus 191 ~~~~vD~i~gGpPCQ~fS~~~~~~~~~~~d~r~~L~~~~~~~i~~~~P~~~v~ENV~gl~~~~~~~~~~~i~~~l~~~GY 270 (620)
..+.+|+|+.+... +. . ++. .+.+.++|.-.++=.... ...+..+++.|.+.||
T Consensus 119 ~~~~~D~v~~~~~~---------------~~-~-~l~---~~~~~LkpgG~lv~~~~~------~~~~~~~~~~l~~~g~ 172 (204)
T 3njr_A 119 DLPLPEAVFIGGGG---------------SQ-A-LYD---RLWEWLAPGTRIVANAVT------LESETLLTQLHARHGG 172 (204)
T ss_dssp TSCCCSEEEECSCC---------------CH-H-HHH---HHHHHSCTTCEEEEEECS------HHHHHHHHHHHHHHCS
T ss_pred cCCCCCEEEECCcc---------------cH-H-HHH---HHHHhcCCCcEEEEEecC------cccHHHHHHHHHhCCC
Confidence 22368999865411 11 1 332 334557886544422222 2446777888888998
Q ss_pred EEEEE
Q psy12304 271 QVTFD 275 (620)
Q Consensus 271 ~v~~~ 275 (620)
.+...
T Consensus 173 ~i~~i 177 (204)
T 3njr_A 173 QLLRI 177 (204)
T ss_dssp EEEEE
T ss_pred cEEEE
Confidence 87543
No 59
>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}
Probab=96.52 E-value=0.027 Score=55.92 Aligned_cols=83 Identities=17% Similarity=0.193 Sum_probs=56.0
Q ss_pred CcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcCC---------CcccccchHHHHHHhhcccccccCc
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQE---------CSVIQDDCNLVLKSLLKGHTQHKGV 187 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p~---------~~~~~~di~~~~~~~~~~~~~~~~~ 187 (620)
..++|||+||.|.+++-+...+-...+.++|+++.+++.-+.|... ..++++|+.++...... .
T Consensus 37 ~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~-------~ 109 (260)
T 2ozv_A 37 ACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVE-------A 109 (260)
T ss_dssp CEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHH-------T
T ss_pred CCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhh-------h
Confidence 4589999999999999888764213588999999999999998754 23455565433211000 0
Q ss_pred CCCCCCccceEEecCCCCcc
Q psy12304 188 SLPQKHEVDLIVAGPPCQGF 207 (620)
Q Consensus 188 ~~p~~~~vD~i~gGpPCQ~f 207 (620)
.++ .+.+|+|+..||.-..
T Consensus 110 ~~~-~~~fD~Vv~nPPy~~~ 128 (260)
T 2ozv_A 110 GLP-DEHFHHVIMNPPYNDA 128 (260)
T ss_dssp TCC-TTCEEEEEECCCC---
T ss_pred ccC-CCCcCEEEECCCCcCC
Confidence 111 3579999999998655
No 60
>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*
Probab=96.51 E-value=0.0094 Score=64.08 Aligned_cols=117 Identities=21% Similarity=0.251 Sum_probs=75.9
Q ss_pred cceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhc-----CCCcccccchHHHHHHhhcccccccCcCCC-C
Q psy12304 118 LKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANF-----QECSVIQDDCNLVLKSLLKGHTQHKGVSLP-Q 191 (620)
Q Consensus 118 l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~-----p~~~~~~~di~~~~~~~~~~~~~~~~~~~p-~ 191 (620)
-+++||+||.|.+++-|...+. -+.++|+++.|++.-+.|. .+..++.+|+.+.+ ..+| .
T Consensus 288 ~~VLDlgcG~G~~~~~la~~~~--~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l------------~~~~~~ 353 (433)
T 1uwv_A 288 DRVLDLFCGMGNFTLPLATQAA--SVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDV------------TKQPWA 353 (433)
T ss_dssp CEEEEESCTTTTTHHHHHTTSS--EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCC------------SSSGGG
T ss_pred CEEEECCCCCCHHHHHHHhhCC--EEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHh------------hhhhhh
Confidence 4799999999999999988854 5899999999999888775 23445555553210 1111 1
Q ss_pred CCccceEEecCCCCccccccccchhhhcccccchHHHHHHHhhhcCCcEEEEccccccccccchhHHHHHHHHHHcCCCE
Q psy12304 192 KHEVDLIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLSFCDLFQPKYIILENVTGLVHFNKNEILQCIFHCLLKMNYQ 271 (620)
Q Consensus 192 ~~~vD~i~gGpPCQ~fS~~~~~~~~~~~d~r~~L~~~~~~~i~~~~P~~~v~ENV~gl~~~~~~~~~~~i~~~l~~~GY~ 271 (620)
.+.+|+|+.-||..+.. ++++.+...+|+.++. ++.+ -..+..-+..|.+.||.
T Consensus 354 ~~~fD~Vv~dPPr~g~~-------------------~~~~~l~~~~p~~ivy------vsc~-p~tlard~~~l~~~Gy~ 407 (433)
T 1uwv_A 354 KNGFDKVLLDPARAGAA-------------------GVMQQIIKLEPIRIVY------VSCN-PATLARDSEALLKAGYT 407 (433)
T ss_dssp TTCCSEEEECCCTTCCH-------------------HHHHHHHHHCCSEEEE------EESC-HHHHHHHHHHHHHTTCE
T ss_pred cCCCCEEEECCCCccHH-------------------HHHHHHHhcCCCeEEE------EECC-hHHHHhhHHHHHHCCcE
Confidence 24689999999964321 1234445577876553 1111 12233445667778999
Q ss_pred EEE
Q psy12304 272 VTF 274 (620)
Q Consensus 272 v~~ 274 (620)
+..
T Consensus 408 ~~~ 410 (433)
T 1uwv_A 408 IAR 410 (433)
T ss_dssp EEE
T ss_pred EEE
Confidence 865
No 61
>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17
Probab=96.49 E-value=0.044 Score=54.99 Aligned_cols=149 Identities=13% Similarity=0.140 Sum_probs=95.2
Q ss_pred CcceecccccccHHHHHHHhc-CCCccEEEEcCchhHHHHHHHhc---------CCCcccccchHHHHHHhhcccccccC
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQA-GVAKPCWSVELERSEAASYDANF---------QECSVIQDDCNLVLKSLLKGHTQHKG 186 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~a-G~~~~~~a~e~d~~a~~ty~~N~---------p~~~~~~~di~~~~~~~~~~~~~~~~ 186 (620)
.-++|||.||.|++..-+... |. .-+.++|+|+.+++.-+.|+ +...++.+|..+.+..
T Consensus 76 ~~~VLdiG~G~G~~~~~l~~~~~~-~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~---------- 144 (275)
T 1iy9_A 76 PEHVLVVGGGDGGVIREILKHPSV-KKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAK---------- 144 (275)
T ss_dssp CCEEEEESCTTCHHHHHHTTCTTC-SEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHT----------
T ss_pred CCEEEEECCchHHHHHHHHhCCCC-ceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhh----------
Confidence 358999999999999888775 65 56899999999999988887 3345667777655321
Q ss_pred cCCCCCCccceEEecCCCCccccccccchhhhcccccchHHHHHHHhhhcCCcEEEEccccccccccchhHHHHHHHHHH
Q psy12304 187 VSLPQKHEVDLIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLSFCDLFQPKYIILENVTGLVHFNKNEILQCIFHCLL 266 (620)
Q Consensus 187 ~~~p~~~~vD~i~gGpPCQ~fS~~~~~~~~~~~d~r~~L~~~~~~~i~~~~P~~~v~ENV~gl~~~~~~~~~~~i~~~l~ 266 (620)
..+.+|+|+..+|.. ...... .....++. .+.+.++|.-+++=|+..-. .....++.+++.|.
T Consensus 145 ----~~~~fD~Ii~d~~~~-~~~~~~-------l~~~~~~~---~~~~~L~pgG~lv~~~~~~~--~~~~~~~~~~~~l~ 207 (275)
T 1iy9_A 145 ----SENQYDVIMVDSTEP-VGPAVN-------LFTKGFYA---GIAKALKEDGIFVAQTDNPW--FTPELITNVQRDVK 207 (275)
T ss_dssp ----CCSCEEEEEESCSSC-CSCCCC-------CSTTHHHH---HHHHHEEEEEEEEEECCCTT--TCHHHHHHHHHHHH
T ss_pred ----CCCCeeEEEECCCCC-CCcchh-------hhHHHHHH---HHHHhcCCCcEEEEEcCCcc--ccHHHHHHHHHHHH
Confidence 124799999987752 211110 00111222 33456789877666653321 12456778888888
Q ss_pred cCCCEEEEEEEecCCCCCcc--cccEEEEEEecC
Q psy12304 267 KMNYQVTFDVLQSGNYGVAQ--SRNRVVILASKP 298 (620)
Q Consensus 267 ~~GY~v~~~~l~A~~yGvPQ--~R~R~fivg~~~ 298 (620)
+..=.+...... +|. ...-.|++|++.
T Consensus 208 ~~F~~v~~~~~~-----vp~~~~g~w~~~~ask~ 236 (275)
T 1iy9_A 208 EIFPITKLYTAN-----IPTYPSGLWTFTIGSKK 236 (275)
T ss_dssp TTCSEEEEEEEC-----CTTSGGGCEEEEEEESS
T ss_pred HhCCCeEEEEEe-----cCcccCcceEEEEeeCC
Confidence 875555544333 344 246788888764
No 62
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=96.45 E-value=0.036 Score=52.17 Aligned_cols=145 Identities=12% Similarity=-0.032 Sum_probs=92.3
Q ss_pred CcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcCCCcccccchHHHHHHhhcccccccCcCCCCCCccc
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQECSVIQDDCNLVLKSLLKGHTQHKGVSLPQKHEVD 196 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p~~~~~~~di~~~~~~~~~~~~~~~~~~~p~~~~vD 196 (620)
..++||+.||.|.++.-|...|. + +.++|+++.+++.-+.+.++..++.+|+.++ .+ ..+.+|
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~~~-~-v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~--------------~~-~~~~fD 104 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASLGH-Q-IEGLEPATRLVELARQTHPSVTFHHGTITDL--------------SD-SPKRWA 104 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHTTC-C-EEEECCCHHHHHHHHHHCTTSEEECCCGGGG--------------GG-SCCCEE
T ss_pred CCeEEEecCCCCHHHHHHHhcCC-e-EEEEeCCHHHHHHHHHhCCCCeEEeCccccc--------------cc-CCCCeE
Confidence 45799999999999999999987 4 8899999999999999998888888887543 11 135799
Q ss_pred eEEecCCCCccccccccchhhhcccccchHHHHHHHhhhcCCcEEEEcccccccc---c------cchhHHHHHHHHHHc
Q psy12304 197 LIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLSFCDLFQPKYIILENVTGLVH---F------NKNEILQCIFHCLLK 267 (620)
Q Consensus 197 ~i~gGpPCQ~fS~~~~~~~~~~~d~r~~L~~~~~~~i~~~~P~~~v~ENV~gl~~---~------~~~~~~~~i~~~l~~ 267 (620)
+|+....-..++. ++ ...++. ++.+.++|.-.++=.+..--. . ........+.+.|.+
T Consensus 105 ~v~~~~~l~~~~~---------~~-~~~~l~---~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 171 (203)
T 3h2b_A 105 GLLAWYSLIHMGP---------GE-LPDALV---ALRMAVEDGGGLLMSFFSGPSLEPMYHPVATAYRWPLPELAQALET 171 (203)
T ss_dssp EEEEESSSTTCCT---------TT-HHHHHH---HHHHTEEEEEEEEEEEECCSSCEEECCSSSCEEECCHHHHHHHHHH
T ss_pred EEEehhhHhcCCH---------HH-HHHHHH---HHHHHcCCCcEEEEEEccCCchhhhhchhhhhccCCHHHHHHHHHH
Confidence 9987543222210 11 112232 344556775443322211110 0 011235678888899
Q ss_pred CCCEEEEEEEecCCCCCcccccEEEEEEecC
Q psy12304 268 MNYQVTFDVLQSGNYGVAQSRNRVVILASKP 298 (620)
Q Consensus 268 ~GY~v~~~~l~A~~yGvPQ~R~R~fivg~~~ 298 (620)
.|+.+.....-.. |...+++..+.
T Consensus 172 ~Gf~~~~~~~~~~-------~p~~~l~~~~~ 195 (203)
T 3h2b_A 172 AGFQVTSSHWDPR-------FPHAYLTAEAS 195 (203)
T ss_dssp TTEEEEEEEECTT-------SSEEEEEEEEC
T ss_pred CCCcEEEEEecCC-------Ccchhhhhhhh
Confidence 9998765443322 77778777764
No 63
>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*
Probab=96.44 E-value=0.0048 Score=65.12 Aligned_cols=74 Identities=16% Similarity=0.176 Sum_probs=55.7
Q ss_pred CcceecccccccHHHHHHHhc-CCCccEEEEcCchhHHHHHHHhcC--------------------CCcccccchHHHHH
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQA-GVAKPCWSVELERSEAASYDANFQ--------------------ECSVIQDDCNLVLK 175 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~a-G~~~~~~a~e~d~~a~~ty~~N~p--------------------~~~~~~~di~~~~~ 175 (620)
..++||+|||+|++++.+... |. .-++++|+++.|++.-+.|.. +..++++|+.+++.
T Consensus 48 ~~~VLDl~aGtG~~~l~~a~~~~~-~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~ 126 (378)
T 2dul_A 48 PKIVLDALSATGIRGIRFALETPA-EEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA 126 (378)
T ss_dssp CSEEEESSCTTSHHHHHHHHHSSC-SEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred CCEEEECCCchhHHHHHHHHhCCC-CeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHH
Confidence 357999999999999988775 54 348999999999998887731 14466778877643
Q ss_pred HhhcccccccCcCCCCCCccceEEecCCCC
Q psy12304 176 SLLKGHTQHKGVSLPQKHEVDLIVAGPPCQ 205 (620)
Q Consensus 176 ~~~~~~~~~~~~~~p~~~~vD~i~gGpPCQ 205 (620)
. . .+.+|+|+.-|||.
T Consensus 127 ~------------~--~~~fD~I~lDP~~~ 142 (378)
T 2dul_A 127 E------------R--HRYFHFIDLDPFGS 142 (378)
T ss_dssp H------------S--TTCEEEEEECCSSC
T ss_pred h------------c--cCCCCEEEeCCCCC
Confidence 2 1 23689999999975
No 64
>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*
Probab=96.42 E-value=0.0038 Score=66.99 Aligned_cols=69 Identities=19% Similarity=0.195 Sum_probs=51.5
Q ss_pred cceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcCC----CcccccchHHHHHHhhcccccccCcCCCCCC
Q psy12304 118 LKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQE----CSVIQDDCNLVLKSLLKGHTQHKGVSLPQKH 193 (620)
Q Consensus 118 l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p~----~~~~~~di~~~~~~~~~~~~~~~~~~~p~~~ 193 (620)
-+++|||||.|.+++-+...+. -+.++|+++.|++.-+.|... ..++.+|+.++ ++ .
T Consensus 292 ~~VLDlgcG~G~~sl~la~~~~--~V~gvD~s~~ai~~A~~n~~~ngl~v~~~~~d~~~~---------------~~--~ 352 (425)
T 2jjq_A 292 EKILDMYSGVGTFGIYLAKRGF--NVKGFDSNEFAIEMARRNVEINNVDAEFEVASDREV---------------SV--K 352 (425)
T ss_dssp SEEEEETCTTTHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHTCCEEEEECCTTTC---------------CC--T
T ss_pred CEEEEeeccchHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHHcCCcEEEEECChHHc---------------Cc--c
Confidence 4799999999999999988764 588999999999888877531 33444454321 12 1
Q ss_pred ccceEEecCCCC
Q psy12304 194 EVDLIVAGPPCQ 205 (620)
Q Consensus 194 ~vD~i~gGpPCQ 205 (620)
.+|+|+.-||..
T Consensus 353 ~fD~Vv~dPPr~ 364 (425)
T 2jjq_A 353 GFDTVIVDPPRA 364 (425)
T ss_dssp TCSEEEECCCTT
T ss_pred CCCEEEEcCCcc
Confidence 689999999953
No 65
>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*
Probab=96.41 E-value=0.021 Score=52.85 Aligned_cols=119 Identities=17% Similarity=0.242 Sum_probs=77.2
Q ss_pred CcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhc------CCCcccccchHHHHHHhhcccccccCcCCC
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANF------QECSVIQDDCNLVLKSLLKGHTQHKGVSLP 190 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~------p~~~~~~~di~~~~~~~~~~~~~~~~~~~p 190 (620)
..+++|+.||.|.++.-+...+. .+.++|+++.+++..+.|. ++..+..+|+.+.+ +
T Consensus 34 ~~~vldiG~G~G~~~~~l~~~~~--~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---------------~ 96 (192)
T 1l3i_A 34 NDVAVDVGCGTGGVTLELAGRVR--RVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEAL---------------C 96 (192)
T ss_dssp TCEEEEESCTTSHHHHHHHTTSS--EEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHH---------------T
T ss_pred CCEEEEECCCCCHHHHHHHHhcC--EEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhc---------------c
Confidence 35899999999999999998883 5889999999998887764 23445566665421 1
Q ss_pred CCCccceEEecCCCCccccccccchhhhcccccchHHHHH-HHhhhcCCcEEEEccccccccccchhHHHHHHHHHHcCC
Q psy12304 191 QKHEVDLIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFL-SFCDLFQPKYIILENVTGLVHFNKNEILQCIFHCLLKMN 269 (620)
Q Consensus 191 ~~~~vD~i~gGpPCQ~fS~~~~~~~~~~~d~r~~L~~~~~-~~i~~~~P~~~v~ENV~gl~~~~~~~~~~~i~~~l~~~G 269 (620)
..+.+|+|+...+... +..++ .+.+.++|.-.++=.... ......+.+.|.+.|
T Consensus 97 ~~~~~D~v~~~~~~~~-------------------~~~~l~~~~~~l~~gG~l~~~~~~------~~~~~~~~~~l~~~g 151 (192)
T 1l3i_A 97 KIPDIDIAVVGGSGGE-------------------LQEILRIIKDKLKPGGRIIVTAIL------LETKFEAMECLRDLG 151 (192)
T ss_dssp TSCCEEEEEESCCTTC-------------------HHHHHHHHHHTEEEEEEEEEEECB------HHHHHHHHHHHHHTT
T ss_pred cCCCCCEEEECCchHH-------------------HHHHHHHHHHhcCCCcEEEEEecC------cchHHHHHHHHHHCC
Confidence 1236899998765411 11222 234456787444322221 234667788888999
Q ss_pred CEEEEEEE
Q psy12304 270 YQVTFDVL 277 (620)
Q Consensus 270 Y~v~~~~l 277 (620)
|.+....+
T Consensus 152 ~~~~~~~~ 159 (192)
T 1l3i_A 152 FDVNITEL 159 (192)
T ss_dssp CCCEEEEE
T ss_pred CceEEEEE
Confidence 97654433
No 66
>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*
Probab=96.41 E-value=0.011 Score=59.15 Aligned_cols=76 Identities=21% Similarity=0.271 Sum_probs=56.0
Q ss_pred CcceecccccccHHHHHHHhc-CCCccEEEEcCchhHHHHHHHhc-----CCCcccccchHHHHHHhhcccccccCcCCC
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQA-GVAKPCWSVELERSEAASYDANF-----QECSVIQDDCNLVLKSLLKGHTQHKGVSLP 190 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~a-G~~~~~~a~e~d~~a~~ty~~N~-----p~~~~~~~di~~~~~~~~~~~~~~~~~~~p 190 (620)
..+++|++||.|.++..+... +. ..+.++|+++.+++.-+.|. ++..++.+|+.+. ++
T Consensus 110 ~~~vLDlG~GsG~~~~~la~~~~~-~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~---------------~~ 173 (276)
T 2b3t_A 110 PCRILDLGTGTGAIALALASERPD-CEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSA---------------LA 173 (276)
T ss_dssp CCEEEEETCTTSHHHHHHHHHCTT-SEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGG---------------GT
T ss_pred CCEEEEecCCccHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhh---------------cc
Confidence 358999999999999888754 22 35889999999999988885 2344455554321 11
Q ss_pred CCCccceEEecCCCCcccc
Q psy12304 191 QKHEVDLIVAGPPCQGFSQ 209 (620)
Q Consensus 191 ~~~~vD~i~gGpPCQ~fS~ 209 (620)
.+.+|+|+..|||.+.+.
T Consensus 174 -~~~fD~Iv~npPy~~~~~ 191 (276)
T 2b3t_A 174 -GQQFAMIVSNPPYIDEQD 191 (276)
T ss_dssp -TCCEEEEEECCCCBCTTC
T ss_pred -cCCccEEEECCCCCCccc
Confidence 357999999999987654
No 67
>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}
Probab=96.39 E-value=0.0097 Score=64.80 Aligned_cols=82 Identities=16% Similarity=0.246 Sum_probs=59.5
Q ss_pred CcceecccccccHHHHHHHhc-CCCccEEEEcCchhHHHHHHHhc-----CCCcccccchHHHHHHhhcccccccCcCCC
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQA-GVAKPCWSVELERSEAASYDANF-----QECSVIQDDCNLVLKSLLKGHTQHKGVSLP 190 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~a-G~~~~~~a~e~d~~a~~ty~~N~-----p~~~~~~~di~~~~~~~~~~~~~~~~~~~p 190 (620)
.-+|||++||.||.++-+... +-.-.++|+|+++.+++..+.|. ++..++++|..++...
T Consensus 118 g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~~-------------- 183 (479)
T 2frx_A 118 PQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAA-------------- 183 (479)
T ss_dssp CSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHHH--------------
T ss_pred CCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhhh--------------
Confidence 458999999999999888763 21125899999999999988874 3445556666543110
Q ss_pred CCCccceEEecCCCCccccccc
Q psy12304 191 QKHEVDLIVAGPPCQGFSQLNR 212 (620)
Q Consensus 191 ~~~~vD~i~gGpPCQ~fS~~~~ 212 (620)
..+.+|+|+.-+||.+.....+
T Consensus 184 ~~~~fD~Il~D~PcSg~G~~~~ 205 (479)
T 2frx_A 184 VPEMFDAILLDAPCSGEGVVRK 205 (479)
T ss_dssp STTCEEEEEEECCCCCGGGGGT
T ss_pred ccccCCEEEECCCcCCcccccC
Confidence 1247999999999998876543
No 68
>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*
Probab=96.38 E-value=0.0028 Score=64.18 Aligned_cols=73 Identities=12% Similarity=0.185 Sum_probs=55.0
Q ss_pred cceecccccccHHHHHHHhc-CCCccEEEEcCchhHHHHHHHhcCC------CcccccchHHHHHHhhcccccccCcCCC
Q psy12304 118 LKCLDLFSGCGGLMEGLCQA-GVAKPCWSVELERSEAASYDANFQE------CSVIQDDCNLVLKSLLKGHTQHKGVSLP 190 (620)
Q Consensus 118 l~~~dLFsG~Gg~s~Gl~~a-G~~~~~~a~e~d~~a~~ty~~N~p~------~~~~~~di~~~~~~~~~~~~~~~~~~~p 190 (620)
.+++|++||.|.+++.+... +. .++++|+++.|++.-+.|... ..++.+|+.+. ++
T Consensus 125 ~~vLDlG~GsG~~~~~la~~~~~--~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~---------------~~ 187 (284)
T 1nv8_A 125 KTVADIGTGSGAIGVSVAKFSDA--IVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEP---------------FK 187 (284)
T ss_dssp CEEEEESCTTSHHHHHHHHHSSC--EEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGG---------------GG
T ss_pred CEEEEEeCchhHHHHHHHHCCCC--EEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhh---------------cc
Confidence 47999999999999988877 43 588999999999998888531 33444554321 11
Q ss_pred CCCcc---ceEEecCCCCcccc
Q psy12304 191 QKHEV---DLIVAGPPCQGFSQ 209 (620)
Q Consensus 191 ~~~~v---D~i~gGpPCQ~fS~ 209 (620)
+.+ |+|+..|||-+.+.
T Consensus 188 --~~f~~~D~IvsnPPyi~~~~ 207 (284)
T 1nv8_A 188 --EKFASIEMILSNPPYVKSSA 207 (284)
T ss_dssp --GGTTTCCEEEECCCCBCGGG
T ss_pred --cccCCCCEEEEcCCCCCccc
Confidence 356 99999999988765
No 69
>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*
Probab=96.36 E-value=0.0022 Score=66.59 Aligned_cols=68 Identities=16% Similarity=0.289 Sum_probs=51.6
Q ss_pred CcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhc------CCCcccccchHHHHHHhhcccccccCcCCC
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANF------QECSVIQDDCNLVLKSLLKGHTQHKGVSLP 190 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~------p~~~~~~~di~~~~~~~~~~~~~~~~~~~p 190 (620)
.-+++|+|||.|++++- .. |. .-++++|+++.|++..+.|. .+..++++|+.++ +
T Consensus 196 ~~~VLDlg~G~G~~~l~-a~-~~-~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~----------------~ 256 (336)
T 2yx1_A 196 NDVVVDMFAGVGPFSIA-CK-NA-KKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREV----------------D 256 (336)
T ss_dssp TCEEEETTCTTSHHHHH-TT-TS-SEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGC----------------C
T ss_pred CCEEEEccCccCHHHHh-cc-CC-CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHh----------------c
Confidence 34799999999999998 55 54 56999999999999988884 2344555565322 1
Q ss_pred CCCccceEEecCCCC
Q psy12304 191 QKHEVDLIVAGPPCQ 205 (620)
Q Consensus 191 ~~~~vD~i~gGpPCQ 205 (620)
+.+|+|+..||..
T Consensus 257 --~~fD~Vi~dpP~~ 269 (336)
T 2yx1_A 257 --VKGNRVIMNLPKF 269 (336)
T ss_dssp --CCEEEEEECCTTT
T ss_pred --CCCcEEEECCcHh
Confidence 4789999999853
No 70
>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A
Probab=96.36 E-value=0.0077 Score=64.64 Aligned_cols=83 Identities=18% Similarity=0.273 Sum_probs=58.8
Q ss_pred CcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcC----CCcccccchHHHHHHhhcccccccCcCCCCC
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQ----ECSVIQDDCNLVLKSLLKGHTQHKGVSLPQK 192 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p----~~~~~~~di~~~~~~~~~~~~~~~~~~~p~~ 192 (620)
.-+++|++||.||.+.-+...+-.-.+.|+|+++.+++..+.|.. +..++++|..++.. .+ ..
T Consensus 247 g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~~~~~------------~~-~~ 313 (429)
T 1sqg_A 247 GEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQ------------WC-GE 313 (429)
T ss_dssp TCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHH------------HH-TT
T ss_pred cCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCCCeEEEeCchhhchh------------hc-cc
Confidence 348999999999999988875421258999999999988888753 23344455432210 01 12
Q ss_pred CccceEEecCCCCccccccc
Q psy12304 193 HEVDLIVAGPPCQGFSQLNR 212 (620)
Q Consensus 193 ~~vD~i~gGpPCQ~fS~~~~ 212 (620)
+.+|+|+.-+||.+.....+
T Consensus 314 ~~fD~Vl~D~Pcsg~g~~~~ 333 (429)
T 1sqg_A 314 QQFDRILLDAPCSATGVIRR 333 (429)
T ss_dssp CCEEEEEEECCCCCGGGTTT
T ss_pred CCCCEEEEeCCCCcccccCC
Confidence 47999999999999877654
No 71
>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*
Probab=96.31 E-value=0.026 Score=55.67 Aligned_cols=68 Identities=13% Similarity=0.050 Sum_probs=55.6
Q ss_pred CcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcCCCcccccchHHHHHHhhcccccccCcCCCCCCccc
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQECSVIQDDCNLVLKSLLKGHTQHKGVSLPQKHEVD 196 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p~~~~~~~di~~~~~~~~~~~~~~~~~~~p~~~~vD 196 (620)
..++||+.||.|.++..+...|. + +.++|+++.+++.-+.+.++..++.+|+.+ ++..+.+|
T Consensus 51 ~~~vLDiGcG~G~~~~~l~~~~~-~-v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~----------------~~~~~~fD 112 (263)
T 3pfg_A 51 AASLLDVACGTGMHLRHLADSFG-T-VEGLELSADMLAIARRRNPDAVLHHGDMRD----------------FSLGRRFS 112 (263)
T ss_dssp CCEEEEETCTTSHHHHHHTTTSS-E-EEEEESCHHHHHHHHHHCTTSEEEECCTTT----------------CCCSCCEE
T ss_pred CCcEEEeCCcCCHHHHHHHHcCC-e-EEEEECCHHHHHHHHhhCCCCEEEECChHH----------------CCccCCcC
Confidence 35899999999999999999886 4 889999999999999998877777777642 22346899
Q ss_pred eEEecC
Q psy12304 197 LIVAGP 202 (620)
Q Consensus 197 ~i~gGp 202 (620)
+|+...
T Consensus 113 ~v~~~~ 118 (263)
T 3pfg_A 113 AVTCMF 118 (263)
T ss_dssp EEEECT
T ss_pred EEEEcC
Confidence 999754
No 72
>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*
Probab=96.26 E-value=0.046 Score=55.50 Aligned_cols=150 Identities=13% Similarity=0.094 Sum_probs=89.1
Q ss_pred cceecccccccHHHHHHHhc-CCCccEEEEcCchhHHHHHHHhcC---------CCcccccchHHHHHHhhcccccccCc
Q psy12304 118 LKCLDLFSGCGGLMEGLCQA-GVAKPCWSVELERSEAASYDANFQ---------ECSVIQDDCNLVLKSLLKGHTQHKGV 187 (620)
Q Consensus 118 l~~~dLFsG~Gg~s~Gl~~a-G~~~~~~a~e~d~~a~~ty~~N~p---------~~~~~~~di~~~~~~~~~~~~~~~~~ 187 (620)
.++||+.||.|+++.-+... +. .-+.++|+|+.+++.-+.|++ +..++.+|..+.+.
T Consensus 92 ~~VLdiG~G~G~~~~~l~~~~~~-~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~------------ 158 (296)
T 1inl_A 92 KKVLIIGGGDGGTLREVLKHDSV-EKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVR------------ 158 (296)
T ss_dssp CEEEEEECTTCHHHHHHTTSTTC-SEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGG------------
T ss_pred CEEEEEcCCcCHHHHHHHhcCCC-CEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHh------------
Confidence 58999999999999988876 54 568999999999999888763 34556677655421
Q ss_pred CCCCCCccceEEecCCCCccccccccchhhhcccccchHHHHH-HHhhhcCCcEEEEccccccccccchhHHHHHHHHHH
Q psy12304 188 SLPQKHEVDLIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFL-SFCDLFQPKYIILENVTGLVHFNKNEILQCIFHCLL 266 (620)
Q Consensus 188 ~~p~~~~vD~i~gGpPCQ~fS~~~~~~~~~~~d~r~~L~~~~~-~~i~~~~P~~~v~ENV~gl~~~~~~~~~~~i~~~l~ 266 (620)
. ..+.+|+|+..+|+....... .. ...+++ .+.+.++|.-+++=++.... .....+..+++.|.
T Consensus 159 ~--~~~~fD~Ii~d~~~~~~~~~~-------~l----~~~~~l~~~~~~LkpgG~lv~~~~~~~--~~~~~~~~~~~~l~ 223 (296)
T 1inl_A 159 K--FKNEFDVIIIDSTDPTAGQGG-------HL----FTEEFYQACYDALKEDGVFSAETEDPF--YDIGWFKLAYRRIS 223 (296)
T ss_dssp G--CSSCEEEEEEEC-----------------C----CSHHHHHHHHHHEEEEEEEEEECCCTT--TTHHHHHHHHHHHH
T ss_pred h--CCCCceEEEEcCCCcccCchh-------hh----hHHHHHHHHHHhcCCCcEEEEEccCcc--cCHHHHHHHHHHHH
Confidence 0 124699999988874222110 00 012233 33456789876655543211 12345667777777
Q ss_pred cCCCEEEEEEEecCCCCCcccccEEEEEEecC
Q psy12304 267 KMNYQVTFDVLQSGNYGVAQSRNRVVILASKP 298 (620)
Q Consensus 267 ~~GY~v~~~~l~A~~yGvPQ~R~R~fivg~~~ 298 (620)
+..=.+......-..| | ...-.|++|++.
T Consensus 224 ~~F~~v~~~~~~vp~~--p-~g~~~f~~as~~ 252 (296)
T 1inl_A 224 KVFPITRVYLGFMTTY--P-SGMWSYTFASKG 252 (296)
T ss_dssp HHCSEEEEEEEECTTS--T-TSEEEEEEEESS
T ss_pred HHCCceEEEEeecCcc--C-CCceEEEEecCC
Confidence 6644554443332223 1 356778888764
No 73
>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45
Probab=96.15 E-value=0.013 Score=60.70 Aligned_cols=152 Identities=12% Similarity=0.071 Sum_probs=82.7
Q ss_pred CCcceecccccccHHHHHHHhcCC-----CccEEEEcCchhHHHHHHHhcC----CCcccccchHHHHHHhhcccccccC
Q psy12304 116 TPLKCLDLFSGCGGLMEGLCQAGV-----AKPCWSVELERSEAASYDANFQ----ECSVIQDDCNLVLKSLLKGHTQHKG 186 (620)
Q Consensus 116 ~~l~~~dLFsG~Gg~s~Gl~~aG~-----~~~~~a~e~d~~a~~ty~~N~p----~~~~~~~di~~~~~~~~~~~~~~~~ 186 (620)
...+++|++||.|++...+....- ...++++|+++.+++.-+.|.. +..++++|..
T Consensus 130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~~~~i~~~D~l--------------- 194 (344)
T 2f8l_A 130 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGL--------------- 194 (344)
T ss_dssp SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTT---------------
T ss_pred CCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCCCceEEECCCC---------------
Confidence 346899999999999988765431 0358999999999988888742 2333334431
Q ss_pred cCCCCCCccceEEecCCCCccccccccchhhh--cccccchHHHH-HHHhhhcCCcE-EEEccccccccccchhHHHHHH
Q psy12304 187 VSLPQKHEVDLIVAGPPCQGFSQLNRARELEK--SKLKNGLVFTF-LSFCDLFQPKY-IILENVTGLVHFNKNEILQCIF 262 (620)
Q Consensus 187 ~~~p~~~~vD~i~gGpPCQ~fS~~~~~~~~~~--~d~r~~L~~~~-~~~i~~~~P~~-~v~ENV~gl~~~~~~~~~~~i~ 262 (620)
... ..+.+|+|++-||..-++.......-.. .+....+...+ ..+++.++|.- +++.--.++++... ...+.
T Consensus 195 ~~~-~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p~~~~~~~~---~~~ir 270 (344)
T 2f8l_A 195 ANL-LVDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDAMFGTSD---FAKVD 270 (344)
T ss_dssp SCC-CCCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGGGGGSTT---HHHHH
T ss_pred Ccc-ccCCccEEEECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEECchhcCCch---HHHHH
Confidence 011 2357999999999733321110000000 01111122222 34456677863 33333335554332 35566
Q ss_pred HHHHcCCCEEEEEEEecCCCCCcc
Q psy12304 263 HCLLKMNYQVTFDVLQSGNYGVAQ 286 (620)
Q Consensus 263 ~~l~~~GY~v~~~~l~A~~yGvPQ 286 (620)
+.|.+.||.....-+...-|+-..
T Consensus 271 ~~l~~~~~~~~ii~lp~~~F~~~~ 294 (344)
T 2f8l_A 271 KFIKKNGHIEGIIKLPETLFKSEQ 294 (344)
T ss_dssp HHHHHHEEEEEEEECCGGGSCC-C
T ss_pred HHHHhCCeEEEeeeCChhhccCCC
Confidence 666666765444445555555433
No 74
>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}
Probab=96.14 E-value=0.018 Score=54.11 Aligned_cols=73 Identities=12% Similarity=0.131 Sum_probs=52.4
Q ss_pred cceecccccccHHHHHHHhc-CCCccEEEEcCchhHHHHHHHhc------CCCcccccchHHHHHHhhcccccccCcCCC
Q psy12304 118 LKCLDLFSGCGGLMEGLCQA-GVAKPCWSVELERSEAASYDANF------QECSVIQDDCNLVLKSLLKGHTQHKGVSLP 190 (620)
Q Consensus 118 l~~~dLFsG~Gg~s~Gl~~a-G~~~~~~a~e~d~~a~~ty~~N~------p~~~~~~~di~~~~~~~~~~~~~~~~~~~p 190 (620)
.++||+.||.|.++.-+... |-...+.++|+++.+++.-+.|. ++..++++|+.++. ..
T Consensus 24 ~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-------------~~- 89 (197)
T 3eey_A 24 DTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMD-------------KY- 89 (197)
T ss_dssp CEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGG-------------GT-
T ss_pred CEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHh-------------hh-
Confidence 48999999999999888775 21125889999999998888774 33455666664331 11
Q ss_pred CCCccceEEecCCC
Q psy12304 191 QKHEVDLIVAGPPC 204 (620)
Q Consensus 191 ~~~~vD~i~gGpPC 204 (620)
..+.+|+|+..+|-
T Consensus 90 ~~~~fD~v~~~~~~ 103 (197)
T 3eey_A 90 IDCPVKAVMFNLGY 103 (197)
T ss_dssp CCSCEEEEEEEESB
T ss_pred ccCCceEEEEcCCc
Confidence 12579999988865
No 75
>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*
Probab=96.13 E-value=0.015 Score=61.84 Aligned_cols=153 Identities=18% Similarity=0.132 Sum_probs=88.5
Q ss_pred cceecccccccHHHHHHHhc--CCCccEEEEcCchhHHHHHHHhcCCCcccccchHHHHHHhhcccccccCcCCCCCCcc
Q psy12304 118 LKCLDLFSGCGGLMEGLCQA--GVAKPCWSVELERSEAASYDANFQECSVIQDDCNLVLKSLLKGHTQHKGVSLPQKHEV 195 (620)
Q Consensus 118 l~~~dLFsG~Gg~s~Gl~~a--G~~~~~~a~e~d~~a~~ty~~N~p~~~~~~~di~~~~~~~~~~~~~~~~~~~p~~~~v 195 (620)
.+++|+.||.|++.+.+.+. +. ..+.++|+++.+++.- ++..++++|+.+. +..+.+
T Consensus 41 ~~vLD~gcGtG~~~~~~~~~~~~~-~~i~gvDi~~~~~~~a----~~~~~~~~D~~~~----------------~~~~~f 99 (421)
T 2ih2_A 41 GRVLEPACAHGPFLRAFREAHGTA-YRFVGVEIDPKALDLP----PWAEGILADFLLW----------------EPGEAF 99 (421)
T ss_dssp CEEEEETCTTCHHHHHHHHHHCSC-SEEEEEESCTTTCCCC----TTEEEEESCGGGC----------------CCSSCE
T ss_pred CEEEECCCCChHHHHHHHHHhCCC-CeEEEEECCHHHHHhC----CCCcEEeCChhhc----------------CccCCC
Confidence 38999999999999988863 22 3689999999887543 3445556665321 123579
Q ss_pred ceEEecCCCCccccccc-------cchh------hhcccccchHHHHHH-HhhhcCCcEEE-EccccccccccchhHHHH
Q psy12304 196 DLIVAGPPCQGFSQLNR-------AREL------EKSKLKNGLVFTFLS-FCDLFQPKYII-LENVTGLVHFNKNEILQC 260 (620)
Q Consensus 196 D~i~gGpPCQ~fS~~~~-------~~~~------~~~d~r~~L~~~~~~-~i~~~~P~~~v-~ENV~gl~~~~~~~~~~~ 260 (620)
|+|++-||.-..+..+. .... ...+.+..++..+++ +.+.++|.-.+ +.--.+++... ..+.
T Consensus 100 D~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~~~l~~~---~~~~ 176 (421)
T 2ih2_A 100 DLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPATWLVLE---DFAL 176 (421)
T ss_dssp EEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGGGGTCG---GGHH
T ss_pred CEEEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEEChHHhcCc---cHHH
Confidence 99999999977665211 0000 001122345555554 45567776433 22222333322 2445
Q ss_pred HHHHHHcCCCEEEEEEEecCCC-CCcccccEEEEEEecC
Q psy12304 261 IFHCLLKMNYQVTFDVLQSGNY-GVAQSRNRVVILASKP 298 (620)
Q Consensus 261 i~~~l~~~GY~v~~~~l~A~~y-GvPQ~R~R~fivg~~~ 298 (620)
+.+.|.+.|+ .....+. .-| |+++ .+++++..+.
T Consensus 177 lr~~l~~~~~-~~i~~l~-~~F~~~~~--~~~il~~~k~ 211 (421)
T 2ih2_A 177 LREFLAREGK-TSVYYLG-EVFPQKKV--SAVVIRFQKS 211 (421)
T ss_dssp HHHHHHHHSE-EEEEEEE-SCSTTCCC--CEEEEEEESS
T ss_pred HHHHHHhcCC-eEEEECC-CCCCCCCc--cEEEEEEEeC
Confidence 6666666777 5555555 444 3333 4566666553
No 76
>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}
Probab=96.11 E-value=0.0072 Score=57.27 Aligned_cols=84 Identities=17% Similarity=0.147 Sum_probs=47.0
Q ss_pred CCcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcCC----CcccccchHHHHHHhhcccccccCcCCCC
Q psy12304 116 TPLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQE----CSVIQDDCNLVLKSLLKGHTQHKGVSLPQ 191 (620)
Q Consensus 116 ~~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p~----~~~~~~di~~~~~~~~~~~~~~~~~~~p~ 191 (620)
...+++|+.||.|.++..+...+-..-+.++|+++.+++.-+.|... ..++.+|+.+.+..... .
T Consensus 30 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~-----------~ 98 (215)
T 4dzr_A 30 SGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGAVVDWAAADGIEWLIERAE-----------R 98 (215)
T ss_dssp TTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC-------------------CCHHHHHHHHHHHHH-----------T
T ss_pred CCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCCceEEEEcchHhhhhhhhh-----------c
Confidence 45689999999999999998874312588999999999988888653 44556666553221100 1
Q ss_pred CCccceEEecCCCCccccc
Q psy12304 192 KHEVDLIVAGPPCQGFSQL 210 (620)
Q Consensus 192 ~~~vD~i~gGpPCQ~fS~~ 210 (620)
.+.+|+|+..||+-..+..
T Consensus 99 ~~~fD~i~~npp~~~~~~~ 117 (215)
T 4dzr_A 99 GRPWHAIVSNPPYIPTGEI 117 (215)
T ss_dssp TCCBSEEEECCCCCC----
T ss_pred cCcccEEEECCCCCCCccc
Confidence 2479999999998655543
No 77
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43
Probab=96.08 E-value=0.031 Score=54.05 Aligned_cols=68 Identities=26% Similarity=0.384 Sum_probs=51.3
Q ss_pred CcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcC----CCcccccchHHHHHHhhcccccccCcCCCCC
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQ----ECSVIQDDCNLVLKSLLKGHTQHKGVSLPQK 192 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p----~~~~~~~di~~~~~~~~~~~~~~~~~~~p~~ 192 (620)
..++||+.||.|.++.-+...|. + +.++|+++.+++.-+.+.+ +..++.+|+.+ ++..
T Consensus 38 ~~~vLdiG~G~G~~~~~l~~~~~-~-~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~----------------~~~~ 99 (246)
T 1y8c_A 38 FDDYLDLACGTGNLTENLCPKFK-N-TWAVDLSQEMLSEAENKFRSQGLKPRLACQDISN----------------LNIN 99 (246)
T ss_dssp TTEEEEETCTTSTTHHHHGGGSS-E-EEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGG----------------CCCS
T ss_pred CCeEEEeCCCCCHHHHHHHHCCC-c-EEEEECCHHHHHHHHHHHhhcCCCeEEEeccccc----------------CCcc
Confidence 45899999999999999999886 4 8899999999888877754 34445555532 2223
Q ss_pred CccceEEecC
Q psy12304 193 HEVDLIVAGP 202 (620)
Q Consensus 193 ~~vD~i~gGp 202 (620)
+.+|+|+...
T Consensus 100 ~~fD~v~~~~ 109 (246)
T 1y8c_A 100 RKFDLITCCL 109 (246)
T ss_dssp CCEEEEEECT
T ss_pred CCceEEEEcC
Confidence 6799999754
No 78
>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}
Probab=96.07 E-value=0.0081 Score=57.00 Aligned_cols=117 Identities=16% Similarity=0.209 Sum_probs=75.2
Q ss_pred CcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcC-----CCcccccchHHHHHHhhcccccccCcCCCC
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQ-----ECSVIQDDCNLVLKSLLKGHTQHKGVSLPQ 191 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p-----~~~~~~~di~~~~~~~~~~~~~~~~~~~p~ 191 (620)
..++||+.||.|.++.-+...|. ..+.++|+++.+++.-+.|.. +..+..+|+.+ . .
T Consensus 61 ~~~vLDiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~----------------~-~ 122 (205)
T 3grz_A 61 PLTVADVGTGSGILAIAAHKLGA-KSVLATDISDESMTAAEENAALNGIYDIALQKTSLLA----------------D-V 122 (205)
T ss_dssp CCEEEEETCTTSHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTT----------------T-C
T ss_pred CCEEEEECCCCCHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHcCCCceEEEeccccc----------------c-C
Confidence 35899999999999999998886 568999999999888877753 23344444421 1 1
Q ss_pred CCccceEEecCCCCccccccccchhhhcccccchHHHHH-HHhhhcCCcEEEEccccccccccchhHHHHHHHHHHcCCC
Q psy12304 192 KHEVDLIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFL-SFCDLFQPKYIILENVTGLVHFNKNEILQCIFHCLLKMNY 270 (620)
Q Consensus 192 ~~~vD~i~gGpPCQ~fS~~~~~~~~~~~d~r~~L~~~~~-~~i~~~~P~~~v~ENV~gl~~~~~~~~~~~i~~~l~~~GY 270 (620)
.+.+|+|+..+|.+. +..++ .+.+.++|.-.++=. ++. ......+...+.+.||
T Consensus 123 ~~~fD~i~~~~~~~~-------------------~~~~l~~~~~~L~~gG~l~~~--~~~----~~~~~~~~~~~~~~Gf 177 (205)
T 3grz_A 123 DGKFDLIVANILAEI-------------------LLDLIPQLDSHLNEDGQVIFS--GID----YLQLPKIEQALAENSF 177 (205)
T ss_dssp CSCEEEEEEESCHHH-------------------HHHHGGGSGGGEEEEEEEEEE--EEE----GGGHHHHHHHHHHTTE
T ss_pred CCCceEEEECCcHHH-------------------HHHHHHHHHHhcCCCCEEEEE--ecC----cccHHHHHHHHHHcCC
Confidence 257999998876321 11222 233456775443321 111 1235667788889999
Q ss_pred EEEEEE
Q psy12304 271 QVTFDV 276 (620)
Q Consensus 271 ~v~~~~ 276 (620)
.+....
T Consensus 178 ~~~~~~ 183 (205)
T 3grz_A 178 QIDLKM 183 (205)
T ss_dssp EEEEEE
T ss_pred ceEEee
Confidence 875543
No 79
>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}
Probab=96.04 E-value=0.07 Score=51.56 Aligned_cols=149 Identities=9% Similarity=0.034 Sum_probs=93.1
Q ss_pred cceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcCC------CcccccchHHHHHHhhcccccccCcCCCC
Q psy12304 118 LKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQE------CSVIQDDCNLVLKSLLKGHTQHKGVSLPQ 191 (620)
Q Consensus 118 l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p~------~~~~~~di~~~~~~~~~~~~~~~~~~~p~ 191 (620)
.++||+.||.|.++..|...|. + +.++|+++.+++.-+.+.+. ..++.+|+. .++.
T Consensus 68 ~~vLDiGcG~G~~~~~l~~~~~-~-v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~----------------~~~~ 129 (235)
T 3lcc_A 68 GRALVPGCGGGHDVVAMASPER-F-VVGLDISESALAKANETYGSSPKAEYFSFVKEDVF----------------TWRP 129 (235)
T ss_dssp EEEEEETCTTCHHHHHHCBTTE-E-EEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTT----------------TCCC
T ss_pred CCEEEeCCCCCHHHHHHHhCCC-e-EEEEECCHHHHHHHHHHhhccCCCcceEEEECchh----------------cCCC
Confidence 5899999999999999988876 4 88999999999999888765 233444442 2233
Q ss_pred CCccceEEecCCCCccccccccchhhhcccccchHHHHHHHhhhcCCcEEEE--cccccccc-c-cchhHHHHHHHHHHc
Q psy12304 192 KHEVDLIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLSFCDLFQPKYIIL--ENVTGLVH-F-NKNEILQCIFHCLLK 267 (620)
Q Consensus 192 ~~~vD~i~gGpPCQ~fS~~~~~~~~~~~d~r~~L~~~~~~~i~~~~P~~~v~--ENV~gl~~-~-~~~~~~~~i~~~l~~ 267 (620)
.+.+|+|+.......+.. + ....++. ++.+.++|.-.++ +....-.. . ........+.+.|.+
T Consensus 130 ~~~fD~v~~~~~l~~~~~---------~-~~~~~l~---~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 196 (235)
T 3lcc_A 130 TELFDLIFDYVFFCAIEP---------E-MRPAWAK---SMYELLKPDGELITLMYPITDHVGGPPYKVDVSTFEEVLVP 196 (235)
T ss_dssp SSCEEEEEEESSTTTSCG---------G-GHHHHHH---HHHHHEEEEEEEEEEECCCSCCCSCSSCCCCHHHHHHHHGG
T ss_pred CCCeeEEEEChhhhcCCH---------H-HHHHHHH---HHHHHCCCCcEEEEEEecccccCCCCCccCCHHHHHHHHHH
Confidence 457999997654333321 0 1112232 3334567754333 32211100 0 001235677788889
Q ss_pred CCCEEEEEEEecCCCCCcccccEEEEEEec
Q psy12304 268 MNYQVTFDVLQSGNYGVAQSRNRVVILASK 297 (620)
Q Consensus 268 ~GY~v~~~~l~A~~yGvPQ~R~R~fivg~~ 297 (620)
.|+.+.............+.++++......
T Consensus 197 ~Gf~~~~~~~~~~~~~~~~g~e~~~~~~~~ 226 (235)
T 3lcc_A 197 IGFKAVSVEENPHAIPTRKGKEKLGRWKKI 226 (235)
T ss_dssp GTEEEEEEEECTTCCTTTTTSCEEEEEEES
T ss_pred cCCeEEEEEecCCccccccCHHHHhhhhhc
Confidence 999987766666666666777777766543
No 80
>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}
Probab=95.89 E-value=0.016 Score=56.12 Aligned_cols=114 Identities=12% Similarity=0.072 Sum_probs=77.4
Q ss_pred CcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcCCCcccccchHHHHHHhhcccccccCcCCCCCCccc
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQECSVIQDDCNLVLKSLLKGHTQHKGVSLPQKHEVD 196 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p~~~~~~~di~~~~~~~~~~~~~~~~~~~p~~~~vD 196 (620)
..++||+.||.|.++.-+...|. -+.++|+++.+++..+.|.++..++.+|+.+. ..++..+.+|
T Consensus 49 ~~~vLDiGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~-------------~~~~~~~~fD 113 (226)
T 3m33_A 49 QTRVLEAGCGHGPDAARFGPQAA--RWAAYDFSPELLKLARANAPHADVYEWNGKGE-------------LPAGLGAPFG 113 (226)
T ss_dssp TCEEEEESCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHCTTSEEEECCSCSS-------------CCTTCCCCEE
T ss_pred CCeEEEeCCCCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHhCCCceEEEcchhhc-------------cCCcCCCCEE
Confidence 35899999999999999999886 48899999999999999988777777666211 0111135799
Q ss_pred eEEecCCCCccccccccchhhhcccccchHHHHHHHhhhcCCcEEEEccccccccccchhHHHHHHHHHHcCCCEEE
Q psy12304 197 LIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLSFCDLFQPKYIILENVTGLVHFNKNEILQCIFHCLLKMNYQVT 273 (620)
Q Consensus 197 ~i~gGpPCQ~fS~~~~~~~~~~~d~r~~L~~~~~~~i~~~~P~~~v~ENV~gl~~~~~~~~~~~i~~~l~~~GY~v~ 273 (620)
+|+..+ + ...++. ++.+.++|.-.++ -+.+.. ....+...|.+.|+.+.
T Consensus 114 ~v~~~~-----------------~-~~~~l~---~~~~~LkpgG~l~-~~~~~~------~~~~~~~~l~~~Gf~~~ 162 (226)
T 3m33_A 114 LIVSRR-----------------G-PTSVIL---RLPELAAPDAHFL-YVGPRL------NVPEVPERLAAVGWDIV 162 (226)
T ss_dssp EEEEES-----------------C-CSGGGG---GHHHHEEEEEEEE-EEESSS------CCTHHHHHHHHTTCEEE
T ss_pred EEEeCC-----------------C-HHHHHH---HHHHHcCCCcEEE-EeCCcC------CHHHHHHHHHHCCCeEE
Confidence 998651 1 112232 3345678888777 111221 23456777888898754
No 81
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}
Probab=95.82 E-value=0.082 Score=50.05 Aligned_cols=134 Identities=11% Similarity=-0.008 Sum_probs=82.0
Q ss_pred CcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcCCCcccccchHHHHHHhhcccccccCcCCCCCCccc
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQECSVIQDDCNLVLKSLLKGHTQHKGVSLPQKHEVD 196 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p~~~~~~~di~~~~~~~~~~~~~~~~~~~p~~~~vD 196 (620)
..++||+.||.|.++.-+...|. + +.++|+++.+++..+.+. +..+..+|+.. ++..+.+|
T Consensus 44 ~~~vLDiGcG~G~~~~~l~~~~~-~-v~~vD~s~~~~~~a~~~~-~~~~~~~d~~~----------------~~~~~~fD 104 (211)
T 3e23_A 44 GAKILELGCGAGYQAEAMLAAGF-D-VDATDGSPELAAEASRRL-GRPVRTMLFHQ----------------LDAIDAYD 104 (211)
T ss_dssp TCEEEESSCTTSHHHHHHHHTTC-E-EEEEESCHHHHHHHHHHH-TSCCEECCGGG----------------CCCCSCEE
T ss_pred CCcEEEECCCCCHHHHHHHHcCC-e-EEEECCCHHHHHHHHHhc-CCceEEeeecc----------------CCCCCcEE
Confidence 45899999999999999999987 4 889999999999988887 45555566542 22346899
Q ss_pred eEEecCCCCccccccccchhhhcccccchHHHHHHHhhhcCCcEEEEccccccccc--------cchhHHHHHHHHHHcC
Q psy12304 197 LIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLSFCDLFQPKYIILENVTGLVHF--------NKNEILQCIFHCLLKM 268 (620)
Q Consensus 197 ~i~gGpPCQ~fS~~~~~~~~~~~d~r~~L~~~~~~~i~~~~P~~~v~ENV~gl~~~--------~~~~~~~~i~~~l~~~ 268 (620)
+|+.......+.. + ....++.+ +.+.++|.-.++=.++..... ........+.+.|.+.
T Consensus 105 ~v~~~~~l~~~~~---------~-~~~~~l~~---~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a 171 (211)
T 3e23_A 105 AVWAHACLLHVPR---------D-ELADVLKL---IWRALKPGGLFYASYKSGEGEGRDKLARYYNYPSEEWLRARYAEA 171 (211)
T ss_dssp EEEECSCGGGSCH---------H-HHHHHHHH---HHHHEEEEEEEEEEEECCSSCEECTTSCEECCCCHHHHHHHHHHH
T ss_pred EEEecCchhhcCH---------H-HHHHHHHH---HHHhcCCCcEEEEEEcCCCcccccccchhccCCCHHHHHHHHHhC
Confidence 9997643222210 0 11123333 334567754443223221110 0012356777888889
Q ss_pred C-CEEEEE-EEecCCC
Q psy12304 269 N-YQVTFD-VLQSGNY 282 (620)
Q Consensus 269 G-Y~v~~~-~l~A~~y 282 (620)
| +.+... ......|
T Consensus 172 G~f~~~~~~~~~~~~~ 187 (211)
T 3e23_A 172 GTWASVAVESSEGKGF 187 (211)
T ss_dssp CCCSEEEEEEEEEECT
T ss_pred CCcEEEEEEeccCCCC
Confidence 9 986543 3444444
No 82
>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53
Probab=95.80 E-value=0.087 Score=50.45 Aligned_cols=130 Identities=11% Similarity=0.121 Sum_probs=78.9
Q ss_pred cceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHh-----cCCCcccccchHHHHHHhhcccccccCcCCCCC
Q psy12304 118 LKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDAN-----FQECSVIQDDCNLVLKSLLKGHTQHKGVSLPQK 192 (620)
Q Consensus 118 l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N-----~p~~~~~~~di~~~~~~~~~~~~~~~~~~~p~~ 192 (620)
-++||+.||.|.++..+....-...+.++|+++.+++.-+.| .++..++.+|+.++.. .++ .
T Consensus 40 ~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~------------~~~-~ 106 (213)
T 2fca_A 40 PIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTD------------VFE-P 106 (213)
T ss_dssp CEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHH------------HCC-T
T ss_pred ceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHh------------hcC-c
Confidence 469999999999999988752112588999999998887766 3455667778765421 122 3
Q ss_pred CccceEEecCCCCccccccccchhhhcccccchHHHHHH-HhhhcCCcEEE-EccccccccccchhHHHHHHHHHHcCCC
Q psy12304 193 HEVDLIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLS-FCDLFQPKYII-LENVTGLVHFNKNEILQCIFHCLLKMNY 270 (620)
Q Consensus 193 ~~vD~i~gGpPCQ~fS~~~~~~~~~~~d~r~~L~~~~~~-~i~~~~P~~~v-~ENV~gl~~~~~~~~~~~i~~~l~~~GY 270 (620)
+.+|.|+..+|+.-...... .+.-....+++ +.+.++|.-.+ ++ ......+..+++.|.+.||
T Consensus 107 ~~~d~v~~~~~~p~~~~~~~--------~~rl~~~~~l~~~~~~LkpgG~l~~~-------td~~~~~~~~~~~~~~~g~ 171 (213)
T 2fca_A 107 GEVKRVYLNFSDPWPKKRHE--------KRRLTYSHFLKKYEEVMGKGGSIHFK-------TDNRGLFEYSLKSFSEYGL 171 (213)
T ss_dssp TSCCEEEEESCCCCCSGGGG--------GGSTTSHHHHHHHHHHHTTSCEEEEE-------ESCHHHHHHHHHHHHHHTC
T ss_pred CCcCEEEEECCCCCcCcccc--------ccccCcHHHHHHHHHHcCCCCEEEEE-------eCCHHHHHHHHHHHHHCCC
Confidence 46899888777643322110 11111123333 33456786433 32 1123456677788888898
Q ss_pred EEEEE
Q psy12304 271 QVTFD 275 (620)
Q Consensus 271 ~v~~~ 275 (620)
.....
T Consensus 172 ~~~~~ 176 (213)
T 2fca_A 172 LLTYV 176 (213)
T ss_dssp EEEEE
T ss_pred ccccc
Confidence 76543
No 83
>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59
Probab=95.77 E-value=0.0087 Score=60.04 Aligned_cols=73 Identities=19% Similarity=0.160 Sum_probs=57.2
Q ss_pred cceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcC---CCcccccchHHHHHHhhcccccccCcCCCCCCc
Q psy12304 118 LKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQ---ECSVIQDDCNLVLKSLLKGHTQHKGVSLPQKHE 194 (620)
Q Consensus 118 l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p---~~~~~~~di~~~~~~~~~~~~~~~~~~~p~~~~ 194 (620)
-.++|||+|.|.+++-+-. |. +-+..+|.++.++++.+.|+. .+.++..|....++.. .|....
T Consensus 93 ~~~LDlfaGSGaLgiEaLS-~~-d~~vfvE~~~~a~~~L~~Nl~~~~~~~V~~~D~~~~L~~l-----------~~~~~~ 159 (283)
T 2oo3_A 93 NSTLSYYPGSPYFAINQLR-SQ-DRLYLCELHPTEYNFLLKLPHFNKKVYVNHTDGVSKLNAL-----------LPPPEK 159 (283)
T ss_dssp SSSCCEEECHHHHHHHHSC-TT-SEEEEECCSHHHHHHHTTSCCTTSCEEEECSCHHHHHHHH-----------CSCTTS
T ss_pred CCceeEeCCcHHHHHHHcC-CC-CeEEEEeCCHHHHHHHHHHhCcCCcEEEEeCcHHHHHHHh-----------cCCCCC
Confidence 3589999999998877776 55 568899999999999999984 4567888887665432 222336
Q ss_pred cceEEecCC
Q psy12304 195 VDLIVAGPP 203 (620)
Q Consensus 195 vD~i~gGpP 203 (620)
.|+|..-||
T Consensus 160 fdLVfiDPP 168 (283)
T 2oo3_A 160 RGLIFIDPS 168 (283)
T ss_dssp CEEEEECCC
T ss_pred ccEEEECCC
Confidence 899999999
No 84
>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}
Probab=95.76 E-value=0.0067 Score=64.50 Aligned_cols=74 Identities=19% Similarity=0.226 Sum_probs=55.7
Q ss_pred cceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcC-------CCcccccchHHHHHHhhcccccccCcCCC
Q psy12304 118 LKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQ-------ECSVIQDDCNLVLKSLLKGHTQHKGVSLP 190 (620)
Q Consensus 118 l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p-------~~~~~~~di~~~~~~~~~~~~~~~~~~~p 190 (620)
-+++|||||.|+.++.|...|. -+.++|+|+.+++.-+.|.. +..++++|+.+++...
T Consensus 95 ~~VLDLgcG~G~~al~LA~~g~--~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~~------------- 159 (410)
T 3ll7_A 95 TKVVDLTGGLGIDFIALMSKAS--QGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPLI------------- 159 (410)
T ss_dssp CEEEESSCSSSHHHHHHHTTCS--EEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHHH-------------
T ss_pred CEEEEeCCCchHHHHHHHhcCC--EEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhhc-------------
Confidence 5799999999999999988875 58899999999999888853 2455667776533211
Q ss_pred CCCccceEEecCCCCc
Q psy12304 191 QKHEVDLIVAGPPCQG 206 (620)
Q Consensus 191 ~~~~vD~i~gGpPCQ~ 206 (620)
..+.+|+|+.-||=.+
T Consensus 160 ~~~~fDvV~lDPPrr~ 175 (410)
T 3ll7_A 160 KTFHPDYIYVDPARRS 175 (410)
T ss_dssp HHHCCSEEEECCEEC-
T ss_pred cCCCceEEEECCCCcC
Confidence 0126899999999544
No 85
>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A
Probab=95.70 E-value=0.007 Score=60.35 Aligned_cols=71 Identities=17% Similarity=0.185 Sum_probs=50.7
Q ss_pred cceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhc--------------CCCcccccchHHHHHHhhccccc
Q psy12304 118 LKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANF--------------QECSVIQDDCNLVLKSLLKGHTQ 183 (620)
Q Consensus 118 l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~--------------p~~~~~~~di~~~~~~~~~~~~~ 183 (620)
-++||+|||.|..++-+...|. + +.++|+++..++..+.|. .+..++++|..+++
T Consensus 90 ~~VLDl~~G~G~dal~lA~~g~-~-V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~L--------- 158 (258)
T 2oyr_A 90 PDVVDATAGLGRDAFVLASVGC-R-VRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTAL--------- 158 (258)
T ss_dssp CCEEETTCTTCHHHHHHHHHTC-C-EEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHS---------
T ss_pred CEEEEcCCcCCHHHHHHHHcCC-E-EEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHHH---------
Confidence 5899999999999999988887 5 899999997544444432 12345566665542
Q ss_pred ccCcCCCCCCccceEEecCCC
Q psy12304 184 HKGVSLPQKHEVDLIVAGPPC 204 (620)
Q Consensus 184 ~~~~~~p~~~~vD~i~gGpPC 204 (620)
..++ +.+|+|+.-||=
T Consensus 159 ---~~~~--~~fDvV~lDP~y 174 (258)
T 2oyr_A 159 ---TDIT--PRPQVVYLDPMF 174 (258)
T ss_dssp ---TTCS--SCCSEEEECCCC
T ss_pred ---HhCc--ccCCEEEEcCCC
Confidence 1222 268999999985
No 86
>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20
Probab=95.69 E-value=0.17 Score=49.09 Aligned_cols=147 Identities=10% Similarity=0.077 Sum_probs=87.7
Q ss_pred CcceecccccccHHHHHHHh--cCCCccEEEEcCchhHHHHHHHhc-----CCCcccccchHHHHHHhhcccccccCcCC
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQ--AGVAKPCWSVELERSEAASYDANF-----QECSVIQDDCNLVLKSLLKGHTQHKGVSL 189 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~--aG~~~~~~a~e~d~~a~~ty~~N~-----p~~~~~~~di~~~~~~~~~~~~~~~~~~~ 189 (620)
.-++||+.||.|.+++-+.. .|. -+.++|+++.+++..+.|. ++..++++|+.++. . ..
T Consensus 71 ~~~vLDiG~G~G~~~~~la~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-----------~-~~ 136 (240)
T 1xdz_A 71 VNTICDVGAGAGFPSLPIKICFPHL--HVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFG-----------Q-RK 136 (240)
T ss_dssp CCEEEEECSSSCTTHHHHHHHCTTC--EEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHT-----------T-CT
T ss_pred CCEEEEecCCCCHHHHHHHHhCCCC--EEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhc-----------c-cc
Confidence 35899999999998888774 344 4889999998888777653 34566777876541 0 00
Q ss_pred CCCCccceEEecCCCCccccccccchhhhcccccchHHHHHHHh-hhcCCcEEE-EccccccccccchhHHHHHHHHHHc
Q psy12304 190 PQKHEVDLIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLSFC-DLFQPKYII-LENVTGLVHFNKNEILQCIFHCLLK 267 (620)
Q Consensus 190 p~~~~vD~i~gGpPCQ~fS~~~~~~~~~~~d~r~~L~~~~~~~i-~~~~P~~~v-~ENV~gl~~~~~~~~~~~i~~~l~~ 267 (620)
...+.+|+|+... + .+ +..+++.+ +.++|.-.+ +. .|.. ....+..+...+..
T Consensus 137 ~~~~~fD~V~~~~----~-----------~~-----~~~~l~~~~~~LkpgG~l~~~--~g~~---~~~~~~~~~~~l~~ 191 (240)
T 1xdz_A 137 DVRESYDIVTARA----V-----------AR-----LSVLSELCLPLVKKNGLFVAL--KAAS---AEEELNAGKKAITT 191 (240)
T ss_dssp TTTTCEEEEEEEC----C-----------SC-----HHHHHHHHGGGEEEEEEEEEE--ECC----CHHHHHHHHHHHHH
T ss_pred cccCCccEEEEec----c-----------CC-----HHHHHHHHHHhcCCCCEEEEE--eCCC---chHHHHHHHHHHHH
Confidence 0124789998632 1 11 22333433 566786433 32 1211 12345667788889
Q ss_pred CCCEEEEE-EEecCCCCCcc-cccEEEEEEecCCCCCCCCCC
Q psy12304 268 MNYQVTFD-VLQSGNYGVAQ-SRNRVVILASKPGYKLPSFPQ 307 (620)
Q Consensus 268 ~GY~v~~~-~l~A~~yGvPQ-~R~R~fivg~~~~~~~p~~P~ 307 (620)
.|+.+... .+. +|. .-.|.+++..+.......+|.
T Consensus 192 ~g~~~~~~~~~~-----~~~~~~~~~l~~~~k~~~~~~~~pr 228 (240)
T 1xdz_A 192 LGGELENIHSFK-----LPIEESDRNIMVIRKIKNTPKKYPR 228 (240)
T ss_dssp TTEEEEEEEEEE-----CTTTCCEEEEEEEEECSCCCTTCSC
T ss_pred cCCeEeEEEEEe-----cCCCCCceEEEEEEecCCCCCCCCC
Confidence 99976433 222 443 345777777776544444553
No 87
>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}
Probab=95.68 E-value=0.059 Score=56.52 Aligned_cols=125 Identities=14% Similarity=0.059 Sum_probs=78.4
Q ss_pred CcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcC-----CCcccccchHHHHHHhhcccccccCcCCCC
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQ-----ECSVIQDDCNLVLKSLLKGHTQHKGVSLPQ 191 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p-----~~~~~~~di~~~~~~~~~~~~~~~~~~~p~ 191 (620)
.-+++|++ |.|.+++.+...|....+.++|+++.+++.-+.|.. +..++.+|+.+ .+|.
T Consensus 173 ~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~---------------~l~~ 236 (373)
T 2qm3_A 173 NKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRK---------------PLPD 236 (373)
T ss_dssp TCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTS---------------CCCT
T ss_pred CCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhh---------------hchh
Confidence 35899999 999999999887752368999999999998888753 33445555432 1331
Q ss_pred --CCccceEEecCCCCccccccccchhhhcccccchHHHHH-HHhhhcCCc--EEEEccccccccccchhHHHHHHHHHH
Q psy12304 192 --KHEVDLIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFL-SFCDLFQPK--YIILENVTGLVHFNKNEILQCIFHCLL 266 (620)
Q Consensus 192 --~~~vD~i~gGpPCQ~fS~~~~~~~~~~~d~r~~L~~~~~-~~i~~~~P~--~~v~ENV~gl~~~~~~~~~~~i~~~l~ 266 (620)
.+.+|+|+..|||... + + ..++ ++.+.++|. .++++-.. . ......+..+...+.
T Consensus 237 ~~~~~fD~Vi~~~p~~~~---~-------------~-~~~l~~~~~~LkpgG~~~~~~~~~-~--~~~~~~~~~~~~~l~ 296 (373)
T 2qm3_A 237 YALHKFDTFITDPPETLE---A-------------I-RAFVGRGIATLKGPRCAGYFGITR-R--ESSLDKWREIQKLLL 296 (373)
T ss_dssp TTSSCBSEEEECCCSSHH---H-------------H-HHHHHHHHHTBCSTTCEEEEEECT-T--TCCHHHHHHHHHHHH
T ss_pred hccCCccEEEECCCCchH---H-------------H-HHHHHHHHHHcccCCeEEEEEEec-C--cCCHHHHHHHHHHHH
Confidence 3479999999997542 0 1 2222 344567883 34665432 0 011122345566666
Q ss_pred -cCCCEEEEEEE
Q psy12304 267 -KMNYQVTFDVL 277 (620)
Q Consensus 267 -~~GY~v~~~~l 277 (620)
..|+.+....-
T Consensus 297 ~~~g~~~~~~~~ 308 (373)
T 2qm3_A 297 NEFNVVITDIIR 308 (373)
T ss_dssp HTSCCEEEEEEE
T ss_pred HhcCcchhhhhh
Confidence 78887754433
No 88
>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*
Probab=95.67 E-value=0.094 Score=53.34 Aligned_cols=150 Identities=14% Similarity=0.247 Sum_probs=92.2
Q ss_pred CcceecccccccHHHHHHHhc-CCCccEEEEcCchhHHHHHHHhc---------CCCcccccchHHHHHHhhcccccccC
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQA-GVAKPCWSVELERSEAASYDANF---------QECSVIQDDCNLVLKSLLKGHTQHKG 186 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~a-G~~~~~~a~e~d~~a~~ty~~N~---------p~~~~~~~di~~~~~~~~~~~~~~~~ 186 (620)
..++||+-||.|++..-+... +. .-+.++|+|+.+++.-+.++ ++..++.+|+.+++..
T Consensus 96 ~~~VLdiG~G~G~~~~~l~~~~~~-~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~---------- 164 (304)
T 3bwc_A 96 PERVLIIGGGDGGVLREVLRHGTV-EHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQ---------- 164 (304)
T ss_dssp CCEEEEEECTTSHHHHHHHTCTTC-CEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHS----------
T ss_pred CCeEEEEcCCCCHHHHHHHhCCCC-CEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHh----------
Confidence 358999999999999988875 33 46889999999999888876 3456677787665321
Q ss_pred cCCCCCCccceEEecCCCCccccccccchhhhcccccchH-HHHH-HHhhhcCCcEEEEccccccccccchhHHHHHHHH
Q psy12304 187 VSLPQKHEVDLIVAGPPCQGFSQLNRARELEKSKLKNGLV-FTFL-SFCDLFQPKYIILENVTGLVHFNKNEILQCIFHC 264 (620)
Q Consensus 187 ~~~p~~~~vD~i~gGpPCQ~fS~~~~~~~~~~~d~r~~L~-~~~~-~~i~~~~P~~~v~ENV~gl~~~~~~~~~~~i~~~ 264 (620)
. ..+.+|+|+..++-.. .. ...|+ .+++ .+.+.++|.-+++=+..... ......+.+.+.
T Consensus 165 --~-~~~~fDvIi~d~~~~~-~~------------~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~--~~~~~~~~~~~~ 226 (304)
T 3bwc_A 165 --T-PDNTYDVVIIDTTDPA-GP------------ASKLFGEAFYKDVLRILKPDGICCNQGESIW--LDLELIEKMSRF 226 (304)
T ss_dssp --S-CTTCEEEEEEECC----------------------CCHHHHHHHHHHEEEEEEEEEEECCTT--TCHHHHHHHHHH
T ss_pred --c-cCCceeEEEECCCCcc-cc------------chhhhHHHHHHHHHHhcCCCcEEEEecCCcc--cchHHHHHHHHH
Confidence 0 1247999998665421 10 11121 2333 34456788766654443321 123467788888
Q ss_pred HHcCCCE-EEEEEEecCCCCCcccccEEEEEEecC
Q psy12304 265 LLKMNYQ-VTFDVLQSGNYGVAQSRNRVVILASKP 298 (620)
Q Consensus 265 l~~~GY~-v~~~~l~A~~yGvPQ~R~R~fivg~~~ 298 (620)
|.+.|+. +.......-.|. .-...|++|++.
T Consensus 227 l~~~GF~~v~~~~~~vP~yp---~g~w~f~~as~~ 258 (304)
T 3bwc_A 227 IRETGFASVQYALMHVPTYP---CGSIGTLVCSKK 258 (304)
T ss_dssp HHHHTCSEEEEEECCCTTST---TSCCEEEEEESS
T ss_pred HHhCCCCcEEEEEeeccccc---CcceEEEEEeCC
Confidence 9999985 343333333331 134668888764
No 89
>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*
Probab=95.64 E-value=0.25 Score=50.62 Aligned_cols=148 Identities=16% Similarity=0.245 Sum_probs=92.4
Q ss_pred CcceecccccccHHHHHHHhc-CCCccEEEEcCchhHHHHHHHhcCC---------CcccccchHHHHHHhhcccccccC
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQA-GVAKPCWSVELERSEAASYDANFQE---------CSVIQDDCNLVLKSLLKGHTQHKG 186 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~a-G~~~~~~a~e~d~~a~~ty~~N~p~---------~~~~~~di~~~~~~~~~~~~~~~~ 186 (620)
..+++|+.||.|+++..+... +. .-+.++|+|+.+++.-+.|++. ..++.+|..+.+..
T Consensus 117 ~~~VLdiG~G~G~~~~~l~~~~~~-~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~---------- 185 (321)
T 2pt6_A 117 PKNVLVVGGGDGGIIRELCKYKSV-ENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLEN---------- 185 (321)
T ss_dssp CCEEEEEECTTCHHHHHHTTCTTC-CEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHH----------
T ss_pred CCEEEEEcCCccHHHHHHHHcCCC-CEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhh----------
Confidence 358999999999999988875 44 4688999999999999998764 34556676654321
Q ss_pred cCCCCCCccceEEecCCCCccccccccchhhhcccccchH-HHHHH-HhhhcCCcEEEEccc-cccccccchhHHHHHHH
Q psy12304 187 VSLPQKHEVDLIVAGPPCQGFSQLNRARELEKSKLKNGLV-FTFLS-FCDLFQPKYIILENV-TGLVHFNKNEILQCIFH 263 (620)
Q Consensus 187 ~~~p~~~~vD~i~gGpPCQ~fS~~~~~~~~~~~d~r~~L~-~~~~~-~i~~~~P~~~v~ENV-~gl~~~~~~~~~~~i~~ 263 (620)
..+.+|+|+..++.. + +. . ..++ .++++ +.+.++|.-+++=+. .... ....+..+++
T Consensus 186 ----~~~~fDvIi~d~~~p-~---~~---~------~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~---~~~~~~~~~~ 245 (321)
T 2pt6_A 186 ----VTNTYDVIIVDSSDP-I---GP---A------ETLFNQNFYEKIYNALKPNGYCVAQCESLWI---HVGTIKNMIG 245 (321)
T ss_dssp ----CCSCEEEEEEECCCS-S---SG---G------GGGSSHHHHHHHHHHEEEEEEEEEEECCTTT---CHHHHHHHHH
T ss_pred ----cCCCceEEEECCcCC-C---Cc---c------hhhhHHHHHHHHHHhcCCCcEEEEEcCCccc---CHHHHHHHHH
Confidence 124689999877532 1 11 0 1122 33333 335678876554333 3322 2356778888
Q ss_pred HHHcCCCEEEEEEEecCCCCCcccccEEEEEEecC
Q psy12304 264 CLLKMNYQVTFDVLQSGNYGVAQSRNRVVILASKP 298 (620)
Q Consensus 264 ~l~~~GY~v~~~~l~A~~yGvPQ~R~R~fivg~~~ 298 (620)
.|.+..-.+......--.|. .-.-.|++|++.
T Consensus 246 ~l~~~F~~v~~~~~~vp~~~---~g~w~f~~as~~ 277 (321)
T 2pt6_A 246 YAKKLFKKVEYANISIPTYP---CGCIGILCCSKT 277 (321)
T ss_dssp HHHTTCSEEEEEEEECTTSG---GGEEEEEEEESS
T ss_pred HHHHHCCCeEEEEEEecccc---CceEEEEEeeCC
Confidence 88887666655444333331 123567888764
No 90
>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}
Probab=95.63 E-value=0.019 Score=57.24 Aligned_cols=74 Identities=15% Similarity=0.089 Sum_probs=55.2
Q ss_pred cceecccccccHHHHHHHhcCCCccEEEEcCch-------hHHHHHHHhc-----CC-CcccccchHHHHHHhhcccccc
Q psy12304 118 LKCLDLFSGCGGLMEGLCQAGVAKPCWSVELER-------SEAASYDANF-----QE-CSVIQDDCNLVLKSLLKGHTQH 184 (620)
Q Consensus 118 l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~-------~a~~ty~~N~-----p~-~~~~~~di~~~~~~~~~~~~~~ 184 (620)
-++||++||.|.+++-+...|. + +.++|+++ .+++..+.|. .+ ..++++|+.+++.....
T Consensus 85 ~~VLDlgcG~G~~a~~lA~~g~-~-V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~~~----- 157 (258)
T 2r6z_A 85 PTVWDATAGLGRDSFVLASLGL-T-VTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALVK----- 157 (258)
T ss_dssp CCEEETTCTTCHHHHHHHHTTC-C-EEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHHHH-----
T ss_pred CeEEEeeCccCHHHHHHHHhCC-E-EEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhhhc-----
Confidence 4799999999999999998886 4 88999999 8888877653 22 56777888776542210
Q ss_pred cCcCCCCCCccceEEecCCC
Q psy12304 185 KGVSLPQKHEVDLIVAGPPC 204 (620)
Q Consensus 185 ~~~~~p~~~~vD~i~gGpPC 204 (620)
..+.+|+|+..||=
T Consensus 158 ------~~~~fD~V~~dP~~ 171 (258)
T 2r6z_A 158 ------TQGKPDIVYLDPMY 171 (258)
T ss_dssp ------HHCCCSEEEECCCC
T ss_pred ------cCCCccEEEECCCC
Confidence 00368999998874
No 91
>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}
Probab=95.62 E-value=0.0052 Score=62.65 Aligned_cols=70 Identities=14% Similarity=0.143 Sum_probs=50.8
Q ss_pred cceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhc-----CCCcccccchHHHHHHhhcccccccCcCCCCC
Q psy12304 118 LKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANF-----QECSVIQDDCNLVLKSLLKGHTQHKGVSLPQK 192 (620)
Q Consensus 118 l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~-----p~~~~~~~di~~~~~~~~~~~~~~~~~~~p~~ 192 (620)
-+++|+.||.|.++..|...|. -+.|+|+|+.+++..+.|. ++..++.+|+. .++ .
T Consensus 44 ~~VLDiG~G~G~lt~~La~~~~--~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~~----------------~~~-~ 104 (299)
T 2h1r_A 44 DIVLEIGCGTGNLTVKLLPLAK--KVITIDIDSRMISEVKKRCLYEGYNNLEVYEGDAI----------------KTV-F 104 (299)
T ss_dssp CEEEEECCTTSTTHHHHTTTSS--EEEEECSCHHHHHHHHHHHHHTTCCCEEC----CC----------------SSC-C
T ss_pred CEEEEEcCcCcHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHcCCCceEEEECchh----------------hCC-c
Confidence 4799999999999999998875 4889999999998888775 33444444442 122 1
Q ss_pred CccceEEecCCCCc
Q psy12304 193 HEVDLIVAGPPCQG 206 (620)
Q Consensus 193 ~~vD~i~gGpPCQ~ 206 (620)
+.+|+|++.+|++.
T Consensus 105 ~~~D~Vv~n~py~~ 118 (299)
T 2h1r_A 105 PKFDVCTANIPYKI 118 (299)
T ss_dssp CCCSEEEEECCGGG
T ss_pred ccCCEEEEcCCccc
Confidence 37899999999653
No 92
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=95.60 E-value=0.011 Score=59.42 Aligned_cols=69 Identities=19% Similarity=0.276 Sum_probs=53.8
Q ss_pred ceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcCC--CcccccchHHHHHHhhcccccccCcCCCCCCccc
Q psy12304 119 KCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQE--CSVIQDDCNLVLKSLLKGHTQHKGVSLPQKHEVD 196 (620)
Q Consensus 119 ~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p~--~~~~~~di~~~~~~~~~~~~~~~~~~~p~~~~vD 196 (620)
+++|+-||.|.++..|...|. -+.|+|+|+..++..+.|+++ ..++++|+.++ .++.....|
T Consensus 49 ~VLEIG~G~G~lt~~L~~~~~--~V~avEid~~~~~~l~~~~~~~~v~vi~~D~l~~--------------~~~~~~~~~ 112 (271)
T 3fut_A 49 PVFEVGPGLGALTRALLEAGA--EVTAIEKDLRLRPVLEETLSGLPVRLVFQDALLY--------------PWEEVPQGS 112 (271)
T ss_dssp CEEEECCTTSHHHHHHHHTTC--CEEEEESCGGGHHHHHHHTTTSSEEEEESCGGGS--------------CGGGSCTTE
T ss_pred eEEEEeCchHHHHHHHHHcCC--EEEEEECCHHHHHHHHHhcCCCCEEEEECChhhC--------------ChhhccCcc
Confidence 899999999999999999885 489999999999999999864 44566676432 111112568
Q ss_pred eEEecCC
Q psy12304 197 LIVAGPP 203 (620)
Q Consensus 197 ~i~gGpP 203 (620)
.|++.+|
T Consensus 113 ~iv~NlP 119 (271)
T 3fut_A 113 LLVANLP 119 (271)
T ss_dssp EEEEEEC
T ss_pred EEEecCc
Confidence 8999888
No 93
>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}
Probab=95.47 E-value=0.012 Score=61.28 Aligned_cols=73 Identities=21% Similarity=0.276 Sum_probs=53.0
Q ss_pred CcceecccccccHHHHHHHhcC-CCccEEEEcCchhHHHHHHHhcC-----CCcccccchHHHHHHhhcccccccCcCCC
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQAG-VAKPCWSVELERSEAASYDANFQ-----ECSVIQDDCNLVLKSLLKGHTQHKGVSLP 190 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~aG-~~~~~~a~e~d~~a~~ty~~N~p-----~~~~~~~di~~~~~~~~~~~~~~~~~~~p 190 (620)
.-+++|+|||.|.+..-+...+ -...++++|+|+.+++.-+.|.. ...+.++|+.++. +
T Consensus 204 ~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~---------------~ 268 (354)
T 3tma_A 204 GMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHLP---------------R 268 (354)
T ss_dssp TCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGG---------------G
T ss_pred CCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhCc---------------c
Confidence 4579999999999998777643 11258899999999999988853 3445556664431 1
Q ss_pred CCCccceEEecCCC
Q psy12304 191 QKHEVDLIVAGPPC 204 (620)
Q Consensus 191 ~~~~vD~i~gGpPC 204 (620)
..+.+|+|+.-|||
T Consensus 269 ~~~~~D~Ii~npPy 282 (354)
T 3tma_A 269 FFPEVDRILANPPH 282 (354)
T ss_dssp TCCCCSEEEECCCS
T ss_pred ccCCCCEEEECCCC
Confidence 12357999999998
No 94
>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*
Probab=95.45 E-value=0.057 Score=56.36 Aligned_cols=135 Identities=19% Similarity=0.171 Sum_probs=77.8
Q ss_pred CcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcC-----------CCcccccchHHHHHHhhccccccc
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQ-----------ECSVIQDDCNLVLKSLLKGHTQHK 185 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p-----------~~~~~~~di~~~~~~~~~~~~~~~ 185 (620)
.-+|||+|||.||=++-+.+.+-...++|+|+++..++..+.|.- +..+.+.|...+..
T Consensus 149 g~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~---------- 218 (359)
T 4fzv_A 149 GDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGE---------- 218 (359)
T ss_dssp TEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHH----------
T ss_pred CCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcch----------
Confidence 458999999999999888776653358899999999998887752 12233334332210
Q ss_pred CcCCCCCCccceEEecCCCCcc--ccccccch---hhhcccccchH---HHHH-HHhhhcCCcEEEEccccccccccchh
Q psy12304 186 GVSLPQKHEVDLIVAGPPCQGF--SQLNRARE---LEKSKLKNGLV---FTFL-SFCDLFQPKYIILENVTGLVHFNKNE 256 (620)
Q Consensus 186 ~~~~p~~~~vD~i~gGpPCQ~f--S~~~~~~~---~~~~d~r~~L~---~~~~-~~i~~~~P~~~v~ENV~gl~~~~~~~ 256 (620)
. ..+.+|.|..-+||.|- ....+... +........|. .+.+ +.++.++|--.++==...|....+..
T Consensus 219 ---~-~~~~fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCSl~~~ENE~ 294 (359)
T 4fzv_A 219 ---L-EGDTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSLSHLQNEY 294 (359)
T ss_dssp ---H-STTCEEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESCCCTTTTHH
T ss_pred ---h-ccccCCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCchhhCHH
Confidence 0 23479999999999873 22211100 00000111111 1111 23445677766665555555555556
Q ss_pred HHHHHHHHH
Q psy12304 257 ILQCIFHCL 265 (620)
Q Consensus 257 ~~~~i~~~l 265 (620)
+++.+++..
T Consensus 295 vV~~~L~~~ 303 (359)
T 4fzv_A 295 VVQGAIELL 303 (359)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhC
Confidence 666666543
No 95
>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A
Probab=95.44 E-value=0.017 Score=56.99 Aligned_cols=53 Identities=15% Similarity=0.149 Sum_probs=43.8
Q ss_pred CcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcC---CCcccccchH
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQ---ECSVIQDDCN 171 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p---~~~~~~~di~ 171 (620)
.-+++|+.||.|.++..+...|. -+.++|+|+.+++..+.|+. +..++++|+.
T Consensus 31 ~~~VLDiG~G~G~lt~~l~~~~~--~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~D~~ 86 (244)
T 1qam_A 31 HDNIFEIGSGKGHFTLELVQRCN--FVTAIEIDHKLCKTTENKLVDHDNFQVLNKDIL 86 (244)
T ss_dssp TCEEEEECCTTSHHHHHHHHHSS--EEEEECSCHHHHHHHHHHTTTCCSEEEECCCGG
T ss_pred CCEEEEEeCCchHHHHHHHHcCC--eEEEEECCHHHHHHHHHhhccCCCeEEEEChHH
Confidence 35799999999999999998884 48899999999999998873 4456666664
No 96
>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*
Probab=95.37 E-value=0.016 Score=60.93 Aligned_cols=123 Identities=15% Similarity=0.203 Sum_probs=75.0
Q ss_pred CcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcC------CCcccccchHHHHHHhhcccccccCcCCC
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQ------ECSVIQDDCNLVLKSLLKGHTQHKGVSLP 190 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p------~~~~~~~di~~~~~~~~~~~~~~~~~~~p 190 (620)
.-+++|++||.|++.+-+...|....++++|+++.+++.-+.|.. ...+.++|+.++ ..
T Consensus 218 ~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~--------------~~- 282 (373)
T 3tm4_A 218 GGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQL--------------SQ- 282 (373)
T ss_dssp SCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGG--------------GG-
T ss_pred CCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhC--------------Cc-
Confidence 457999999999999988887752268999999999998888852 234455565432 01
Q ss_pred CCCccceEEecCCCCccccccccchhhhcccccchHHHHHHHhhh-cCCcEEEEccccccccccchhHHHHHHHHHHcCC
Q psy12304 191 QKHEVDLIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLSFCDL-FQPKYIILENVTGLVHFNKNEILQCIFHCLLKMN 269 (620)
Q Consensus 191 ~~~~vD~i~gGpPCQ~fS~~~~~~~~~~~d~r~~L~~~~~~~i~~-~~P~~~v~ENV~gl~~~~~~~~~~~i~~~l~~~G 269 (620)
..+.+|+|+..||.--. .+ .......|+..+++.+.. +.+..+++-- . ...+.+.+.+.|
T Consensus 283 ~~~~fD~Ii~npPyg~r--~~------~~~~~~~ly~~~~~~l~r~l~g~~~~i~~-------~----~~~~~~~~~~~G 343 (373)
T 3tm4_A 283 YVDSVDFAISNLPYGLK--IG------KKSMIPDLYMKFFNELAKVLEKRGVFITT-------E----KKAIEEAIAENG 343 (373)
T ss_dssp TCSCEEEEEEECCCC--------------CCHHHHHHHHHHHHHHHEEEEEEEEES-------C----HHHHHHHHHHTT
T ss_pred ccCCcCEEEECCCCCcc--cC------cchhHHHHHHHHHHHHHHHcCCeEEEEEC-------C----HHHHHHHHHHcC
Confidence 12579999999995211 01 011122345555554444 3444444421 1 223345667789
Q ss_pred CEEE
Q psy12304 270 YQVT 273 (620)
Q Consensus 270 Y~v~ 273 (620)
+.+.
T Consensus 344 ~~~~ 347 (373)
T 3tm4_A 344 FEII 347 (373)
T ss_dssp EEEE
T ss_pred CEEE
Confidence 8875
No 97
>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13
Probab=95.35 E-value=0.064 Score=53.50 Aligned_cols=114 Identities=13% Similarity=0.121 Sum_probs=72.1
Q ss_pred CcceecccccccHHHHHHHhc-CCCccEEEEcCchhHHHHHHHhcC------CCcccccchHHHHHHhhcccccccCcCC
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQA-GVAKPCWSVELERSEAASYDANFQ------ECSVIQDDCNLVLKSLLKGHTQHKGVSL 189 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~a-G~~~~~~a~e~d~~a~~ty~~N~p------~~~~~~~di~~~~~~~~~~~~~~~~~~~ 189 (620)
..++||++||.|.+++.+... |-...+.++|+++.+++.-+.|.. +..++.+|+.+. +
T Consensus 113 ~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---------------~ 177 (277)
T 1o54_A 113 GDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEG---------------F 177 (277)
T ss_dssp TCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGC---------------C
T ss_pred CCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHc---------------c
Confidence 358999999999999998876 421358899999999998888752 233344444211 2
Q ss_pred CCCCccceEEecCCCCccccccccchhhhcccccchHHHHHHHhhhcCCcEEEEccccccccccchhHHHHHHHHHHcCC
Q psy12304 190 PQKHEVDLIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLSFCDLFQPKYIILENVTGLVHFNKNEILQCIFHCLLKMN 269 (620)
Q Consensus 190 p~~~~vD~i~gGpPCQ~fS~~~~~~~~~~~d~r~~L~~~~~~~i~~~~P~~~v~ENV~gl~~~~~~~~~~~i~~~l~~~G 269 (620)
+ .+.+|+|+..+|+. ..++.+. .+.++|.-.++=.++. ...+..+++.|.+.|
T Consensus 178 ~-~~~~D~V~~~~~~~-----------------~~~l~~~---~~~L~pgG~l~~~~~~------~~~~~~~~~~l~~~g 230 (277)
T 1o54_A 178 D-EKDVDALFLDVPDP-----------------WNYIDKC---WEALKGGGRFATVCPT------TNQVQETLKKLQELP 230 (277)
T ss_dssp S-CCSEEEEEECCSCG-----------------GGTHHHH---HHHEEEEEEEEEEESS------HHHHHHHHHHHHHSS
T ss_pred c-CCccCEEEECCcCH-----------------HHHHHHH---HHHcCCCCEEEEEeCC------HHHHHHHHHHHHHCC
Confidence 2 24699999877643 1233333 3456675433322221 123566777888889
Q ss_pred CEE
Q psy12304 270 YQV 272 (620)
Q Consensus 270 Y~v 272 (620)
|..
T Consensus 231 f~~ 233 (277)
T 1o54_A 231 FIR 233 (277)
T ss_dssp EEE
T ss_pred Cce
Confidence 864
No 98
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=95.32 E-value=0.009 Score=59.47 Aligned_cols=53 Identities=19% Similarity=0.197 Sum_probs=44.0
Q ss_pred cceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcC---CCcccccchHH
Q psy12304 118 LKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQ---ECSVIQDDCNL 172 (620)
Q Consensus 118 l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p---~~~~~~~di~~ 172 (620)
-+++|+.||.|.++..|...|. -+.|+|+|+..++..+.++. +..++.+|+.+
T Consensus 31 ~~VLEIG~G~G~lt~~La~~~~--~V~avEid~~~~~~~~~~~~~~~~v~~i~~D~~~ 86 (255)
T 3tqs_A 31 DTLVEIGPGRGALTDYLLTECD--NLALVEIDRDLVAFLQKKYNQQKNITIYQNDALQ 86 (255)
T ss_dssp CEEEEECCTTTTTHHHHTTTSS--EEEEEECCHHHHHHHHHHHTTCTTEEEEESCTTT
T ss_pred CEEEEEcccccHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHhhCCCcEEEEcchHh
Confidence 4799999999999999999884 48999999999999998874 44566667643
No 99
>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}
Probab=95.32 E-value=0.099 Score=50.55 Aligned_cols=145 Identities=12% Similarity=0.101 Sum_probs=79.9
Q ss_pred CcceecccccccHHHHHHHhc-CCCccEEEEcCchhHHHHHHHhc---CCCcccccchHHHHHHhhcccccccCcCCC-C
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQA-GVAKPCWSVELERSEAASYDANF---QECSVIQDDCNLVLKSLLKGHTQHKGVSLP-Q 191 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~a-G~~~~~~a~e~d~~a~~ty~~N~---p~~~~~~~di~~~~~~~~~~~~~~~~~~~p-~ 191 (620)
.-++||+.||.|+++.-+... |-...+.++|+++.+++....+. ++...+.+|+.+. ..++ .
T Consensus 78 ~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~~~v~~~~~d~~~~-------------~~~~~~ 144 (233)
T 2ipx_A 78 GAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHP-------------HKYRML 144 (233)
T ss_dssp TCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHCTTEEEECSCTTCG-------------GGGGGG
T ss_pred CCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhccCCeEEEEcccCCh-------------hhhccc
Confidence 358999999999999988775 31135889999977544433322 4555666666432 0011 1
Q ss_pred CCccceEEecCCCCccccccccchhhhcccccchHHHHHHHhhhcCCcEEEEccccc-cccc--cchhHHHHHHHHHHcC
Q psy12304 192 KHEVDLIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLSFCDLFQPKYIILENVTG-LVHF--NKNEILQCIFHCLLKM 268 (620)
Q Consensus 192 ~~~vD~i~gGpPCQ~fS~~~~~~~~~~~d~r~~L~~~~~~~i~~~~P~~~v~ENV~g-l~~~--~~~~~~~~i~~~l~~~ 268 (620)
.+.+|+|+..+| .. +....++ ..+.+.++|.-.++=-+.. -... .....+..-++.|.+.
T Consensus 145 ~~~~D~V~~~~~-------~~-------~~~~~~~---~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~ 207 (233)
T 2ipx_A 145 IAMVDVIFADVA-------QP-------DQTRIVA---LNAHTFLRNGGHFVISIKANCIDSTASAEAVFASEVKKMQQE 207 (233)
T ss_dssp CCCEEEEEECCC-------CT-------THHHHHH---HHHHHHEEEEEEEEEEEEHHHHCSSSCHHHHHHHHHHTTGGG
T ss_pred CCcEEEEEEcCC-------Cc-------cHHHHHH---HHHHHHcCCCeEEEEEEcccccccCCCHHHHHHHHHHHHHHC
Confidence 247899998665 10 0001112 2355677886533222221 0000 1112233336778889
Q ss_pred CCEEEEE-EEecCCCCCcccccEEEEEEec
Q psy12304 269 NYQVTFD-VLQSGNYGVAQSRNRVVILASK 297 (620)
Q Consensus 269 GY~v~~~-~l~A~~yGvPQ~R~R~fivg~~ 297 (620)
||.+... .++ |-.+...+++|..
T Consensus 208 Gf~~~~~~~~~------~~~~~~~~v~~~~ 231 (233)
T 2ipx_A 208 NMKPQEQLTLE------PYERDHAVVVGVY 231 (233)
T ss_dssp TEEEEEEEECT------TTSSSEEEEEEEE
T ss_pred CCceEEEEecC------CccCCcEEEEEEe
Confidence 9987643 232 3345677777754
No 100
>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*
Probab=95.31 E-value=0.014 Score=61.61 Aligned_cols=74 Identities=24% Similarity=0.378 Sum_probs=55.6
Q ss_pred CCcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcC----CCcccccchHHHHHHhhcccccccCcCCCC
Q psy12304 116 TPLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQ----ECSVIQDDCNLVLKSLLKGHTQHKGVSLPQ 191 (620)
Q Consensus 116 ~~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p----~~~~~~~di~~~~~~~~~~~~~~~~~~~p~ 191 (620)
...+++||+||.|.+++-+...|. -+.++|+++.+++.-+.|.. +..++.+|+.+. .+.
T Consensus 233 ~~~~VLDlGcG~G~~~~~la~~g~--~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~~---------------~~~ 295 (381)
T 3dmg_A 233 RGRQVLDLGAGYGALTLPLARMGA--EVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEA---------------LTE 295 (381)
T ss_dssp TTCEEEEETCTTSTTHHHHHHTTC--EEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTT---------------SCT
T ss_pred CCCEEEEEeeeCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhhc---------------ccc
Confidence 345899999999999999999886 48899999999988887753 234455555321 112
Q ss_pred CCccceEEecCCCCc
Q psy12304 192 KHEVDLIVAGPPCQG 206 (620)
Q Consensus 192 ~~~vD~i~gGpPCQ~ 206 (620)
.+.+|+|+..||...
T Consensus 296 ~~~fD~Ii~npp~~~ 310 (381)
T 3dmg_A 296 EARFDIIVTNPPFHV 310 (381)
T ss_dssp TCCEEEEEECCCCCT
T ss_pred CCCeEEEEECCchhh
Confidence 358999999999753
No 101
>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*
Probab=95.28 E-value=0.023 Score=57.91 Aligned_cols=79 Identities=15% Similarity=0.099 Sum_probs=55.7
Q ss_pred cceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcC----CCcccccchHHHHHHhhcccccccCcCCCCCC
Q psy12304 118 LKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQ----ECSVIQDDCNLVLKSLLKGHTQHKGVSLPQKH 193 (620)
Q Consensus 118 l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p----~~~~~~~di~~~~~~~~~~~~~~~~~~~p~~~ 193 (620)
-++||++||.||.++.+...+-...++++|+|+.|++.-+.|.. +..++.+|..++...+ . .. ..+
T Consensus 28 ~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g~~v~~v~~d~~~l~~~l-~--------~~-g~~ 97 (301)
T 1m6y_A 28 KIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLL-K--------TL-GIE 97 (301)
T ss_dssp CEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHH-H--------HT-TCS
T ss_pred CEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHH-H--------hc-CCC
Confidence 47999999999999998875211258999999999999888763 3456667776552211 0 00 013
Q ss_pred ccceEEecCCCCc
Q psy12304 194 EVDLIVAGPPCQG 206 (620)
Q Consensus 194 ~vD~i~gGpPCQ~ 206 (620)
.+|.|+..+||..
T Consensus 98 ~~D~Vl~D~gvSs 110 (301)
T 1m6y_A 98 KVDGILMDLGVST 110 (301)
T ss_dssp CEEEEEEECSCCH
T ss_pred CCCEEEEcCccch
Confidence 6899999998853
No 102
>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13
Probab=95.26 E-value=0.14 Score=50.91 Aligned_cols=114 Identities=12% Similarity=0.081 Sum_probs=72.3
Q ss_pred CCcceecccccccHHHHHHHhc---CCCccEEEEcCchhHHHHHHHhcC------CCcccccchHHHHHHhhcccccccC
Q psy12304 116 TPLKCLDLFSGCGGLMEGLCQA---GVAKPCWSVELERSEAASYDANFQ------ECSVIQDDCNLVLKSLLKGHTQHKG 186 (620)
Q Consensus 116 ~~l~~~dLFsG~Gg~s~Gl~~a---G~~~~~~a~e~d~~a~~ty~~N~p------~~~~~~~di~~~~~~~~~~~~~~~~ 186 (620)
...++||+.||.|+++.-+... +. .+.++|+++.+++.-+.|.. +..+..+|+.+
T Consensus 110 ~~~~VLD~G~G~G~~~~~la~~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~-------------- 173 (275)
T 1yb2_A 110 PGMDILEVGVGSGNMSSYILYALNGKG--TLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIAD-------------- 173 (275)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHTTSS--EEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTT--------------
T ss_pred CcCEEEEecCCCCHHHHHHHHHcCCCC--EEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhc--------------
Confidence 3458999999999999988876 43 58899999999988887752 23334444421
Q ss_pred cCCCCCCccceEEecCCCCccccccccchhhhcccccchHHHHHHHhhhcCCcEEEEccccccccccchhHHHHHHHHHH
Q psy12304 187 VSLPQKHEVDLIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLSFCDLFQPKYIILENVTGLVHFNKNEILQCIFHCLL 266 (620)
Q Consensus 187 ~~~p~~~~vD~i~gGpPCQ~fS~~~~~~~~~~~d~r~~L~~~~~~~i~~~~P~~~v~ENV~gl~~~~~~~~~~~i~~~l~ 266 (620)
.++ .+.+|+|+..+|- . ..++.+ +.+.++|.-.++=.++.. .....+++.|.
T Consensus 174 -~~~-~~~fD~Vi~~~~~----------------~-~~~l~~---~~~~LkpgG~l~i~~~~~------~~~~~~~~~l~ 225 (275)
T 1yb2_A 174 -FIS-DQMYDAVIADIPD----------------P-WNHVQK---IASMMKPGSVATFYLPNF------DQSEKTVLSLS 225 (275)
T ss_dssp -CCC-SCCEEEEEECCSC----------------G-GGSHHH---HHHTEEEEEEEEEEESSH------HHHHHHHHHSG
T ss_pred -cCc-CCCccEEEEcCcC----------------H-HHHHHH---HHHHcCCCCEEEEEeCCH------HHHHHHHHHHH
Confidence 122 2468999985541 0 123333 334567765443333222 23567778888
Q ss_pred cCCCEEE
Q psy12304 267 KMNYQVT 273 (620)
Q Consensus 267 ~~GY~v~ 273 (620)
+.||...
T Consensus 226 ~~Gf~~~ 232 (275)
T 1yb2_A 226 ASGMHHL 232 (275)
T ss_dssp GGTEEEE
T ss_pred HCCCeEE
Confidence 8999754
No 103
>2qfm_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC; HET: SPD MTA; 1.80A {Homo sapiens} PDB: 3c6k_A* 3c6m_A*
Probab=95.25 E-value=0.2 Score=52.07 Aligned_cols=152 Identities=19% Similarity=0.194 Sum_probs=91.8
Q ss_pred CCcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcCC-------------CcccccchHHHHHHhhcccc
Q psy12304 116 TPLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQE-------------CSVIQDDCNLVLKSLLKGHT 182 (620)
Q Consensus 116 ~~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p~-------------~~~~~~di~~~~~~~~~~~~ 182 (620)
.+-++|+|++|.|++..-+...+. .-+.+||+|+.+++.-+.|++. ..++.+|..++++....
T Consensus 188 ~pkrVL~IGgG~G~~arellk~~~-~~Vt~VEID~~vie~Ar~~~~~l~~~~l~dp~~~rv~vi~~Da~~~L~~~~~--- 263 (364)
T 2qfm_A 188 TGKDVLILGGGDGGILCEIVKLKP-KMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAK--- 263 (364)
T ss_dssp TTCEEEEEECTTCHHHHHHHTTCC-SEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHH---
T ss_pred CCCEEEEEECChhHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHhccccccccCCCcEEEEECcHHHHHHhhhc---
Confidence 456899999999999988877776 6688999999999999999873 35567788777654210
Q ss_pred cccCcCCCCCCccceEEecCCCCccccccccchhhhcccccch-HHHHHHH-----hhhcCCcEEEEccccccccccchh
Q psy12304 183 QHKGVSLPQKHEVDLIVAGPPCQGFSQLNRARELEKSKLKNGL-VFTFLSF-----CDLFQPKYIILENVTGLVHFNKNE 256 (620)
Q Consensus 183 ~~~~~~~p~~~~vD~i~gGpPCQ~fS~~~~~~~~~~~d~r~~L-~~~~~~~-----i~~~~P~~~v~ENV~gl~~~~~~~ 256 (620)
..+.+|+|+.-+|=.+++..- ..| -.+|.+. .+.++|.-+++=|.....- ..
T Consensus 264 --------~~~~fDvII~D~~d~P~~~~p-----------~~L~t~eFy~~~~~~~~~~L~pgGilv~qs~s~~~---~e 321 (364)
T 2qfm_A 264 --------EGREFDYVINDLTAVPISTSP-----------EEDSTWEFLRLILDLSMKVLKQDGKYFTQGNCVNL---TE 321 (364)
T ss_dssp --------HTCCEEEEEEECCSSCCCCC---------------CHHHHHHHHHHHHHHTEEEEEEEEEEEEETTC---HH
T ss_pred --------cCCCceEEEECCCCcccCcCc-----------hhhhHHHHHHHHHHHHHhhCCCCcEEEEEcCCcch---HH
Confidence 123689999988632222110 001 1334443 3678898877766543321 23
Q ss_pred HHHHHHHHHHcCCCEEEE--EEEecCCCCCcccccEEEEEEec
Q psy12304 257 ILQCIFHCLLKMNYQVTF--DVLQSGNYGVAQSRNRVVILASK 297 (620)
Q Consensus 257 ~~~~i~~~l~~~GY~v~~--~~l~A~~yGvPQ~R~R~fivg~~ 297 (620)
.+..+.+.|.++==.|.+ ....--.|+- .-+|.++.+
T Consensus 322 ~~~~~~~~l~~~F~~v~~~~~~~~vPsy~~----~w~f~~~~k 360 (364)
T 2qfm_A 322 ALSLYEEQLGRLYCPVEFSKEIVCVPSYLE----LWVFYTVWK 360 (364)
T ss_dssp HHHHHHHHHTTSSSCEEEEEEEECCGGGSS----CEEEEEEEE
T ss_pred HHHHHHHHHHHhCCceEEeeEeeecCCchh----heEeEEeec
Confidence 333333345554334554 3333333432 455555554
No 104
>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42
Probab=95.23 E-value=0.1 Score=50.57 Aligned_cols=132 Identities=10% Similarity=0.022 Sum_probs=78.0
Q ss_pred CCcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcCCC-----cccccchHHHHHHhhcccccccCcCCC
Q psy12304 116 TPLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQEC-----SVIQDDCNLVLKSLLKGHTQHKGVSLP 190 (620)
Q Consensus 116 ~~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p~~-----~~~~~di~~~~~~~~~~~~~~~~~~~p 190 (620)
...++||+.||.|.++..|...+. .-+.++|+++.+++.-+.+.... .++.+|+.++ ..
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~--------------~~- 142 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPLF-REVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDF--------------TP- 142 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTTC-SEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGC--------------CC-
T ss_pred CCCEEEEECCCCCHHHHHHHHhcC-CEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhc--------------CC-
Confidence 356899999999999999888775 56899999999999988887542 2333443221 11
Q ss_pred CCCccceEEecCCCCccccccccchhhhcccccchHHHHHHHhhhcCCc--EEEEcccccc---ccccc---hhHHHHHH
Q psy12304 191 QKHEVDLIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLSFCDLFQPK--YIILENVTGL---VHFNK---NEILQCIF 262 (620)
Q Consensus 191 ~~~~vD~i~gGpPCQ~fS~~~~~~~~~~~d~r~~L~~~~~~~i~~~~P~--~~v~ENV~gl---~~~~~---~~~~~~i~ 262 (620)
..+.+|+|+....-..+. . .....++. ++.+.++|. +++.+++..- ..... ......+.
T Consensus 143 ~~~~fD~v~~~~~l~~~~------~----~~~~~~l~---~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (241)
T 2ex4_A 143 EPDSYDVIWIQWVIGHLT------D----QHLAEFLR---RCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVR 209 (241)
T ss_dssp CSSCEEEEEEESCGGGSC------H----HHHHHHHH---HHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHH
T ss_pred CCCCEEEEEEcchhhhCC------H----HHHHHHHH---HHHHhcCCCeEEEEEEccCCCcceecccCCcccCCHHHHH
Confidence 234699998653211110 0 00112222 334456774 4444654431 00000 11356778
Q ss_pred HHHHcCCCEEEEEE
Q psy12304 263 HCLLKMNYQVTFDV 276 (620)
Q Consensus 263 ~~l~~~GY~v~~~~ 276 (620)
+.|.+.|+.+....
T Consensus 210 ~~l~~aGf~~~~~~ 223 (241)
T 2ex4_A 210 RIICSAGLSLLAEE 223 (241)
T ss_dssp HHHHHTTCCEEEEE
T ss_pred HHHHHcCCeEEEee
Confidence 88889999875443
No 105
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}
Probab=95.20 E-value=0.094 Score=50.47 Aligned_cols=72 Identities=18% Similarity=0.188 Sum_probs=53.8
Q ss_pred CCcceecccccccHHHHHHHhc--CCCccEEEEcCchhHHHHHHHhcCC---CcccccchHHHHHHhhcccccccCcCCC
Q psy12304 116 TPLKCLDLFSGCGGLMEGLCQA--GVAKPCWSVELERSEAASYDANFQE---CSVIQDDCNLVLKSLLKGHTQHKGVSLP 190 (620)
Q Consensus 116 ~~l~~~dLFsG~Gg~s~Gl~~a--G~~~~~~a~e~d~~a~~ty~~N~p~---~~~~~~di~~~~~~~~~~~~~~~~~~~p 190 (620)
...++||+-||.|.++..+... |. -+.++|+++.+++..+.+.+. ..++.+|+. .++
T Consensus 44 ~~~~vLDiG~G~G~~~~~l~~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~----------------~~~ 105 (234)
T 3dtn_A 44 ENPDILDLGAGTGLLSAFLMEKYPEA--TFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYS----------------KYD 105 (234)
T ss_dssp SSCEEEEETCTTSHHHHHHHHHCTTC--EEEEEESCHHHHHHHHHHTCSCTTEEEEESCTT----------------TCC
T ss_pred CCCeEEEecCCCCHHHHHHHHhCCCC--eEEEEECCHHHHHHHHHhhccCCCEEEEeCchh----------------ccC
Confidence 4578999999999999999887 54 488999999999999988763 334444442 223
Q ss_pred CCCccceEEecCCCC
Q psy12304 191 QKHEVDLIVAGPPCQ 205 (620)
Q Consensus 191 ~~~~vD~i~gGpPCQ 205 (620)
..+.+|+|+......
T Consensus 106 ~~~~fD~v~~~~~l~ 120 (234)
T 3dtn_A 106 FEEKYDMVVSALSIH 120 (234)
T ss_dssp CCSCEEEEEEESCGG
T ss_pred CCCCceEEEEeCccc
Confidence 336899999876543
No 106
>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*
Probab=95.19 E-value=0.055 Score=53.47 Aligned_cols=117 Identities=19% Similarity=0.199 Sum_probs=75.8
Q ss_pred CcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcCC----CcccccchHHHHHHhhcccccccCcCCCCC
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQE----CSVIQDDCNLVLKSLLKGHTQHKGVSLPQK 192 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p~----~~~~~~di~~~~~~~~~~~~~~~~~~~p~~ 192 (620)
..+++|+.||.|.+++.+...|. -+.++|+++.+++.-+.|... ..++.+|+.+. ++ .
T Consensus 121 ~~~VLDiGcG~G~l~~~la~~g~--~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~~---------------~~-~ 182 (254)
T 2nxc_A 121 GDKVLDLGTGSGVLAIAAEKLGG--KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAA---------------LP-F 182 (254)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTC--EEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHH---------------GG-G
T ss_pred CCEEEEecCCCcHHHHHHHHhCC--eEEEEECCHHHHHHHHHHHHHcCCcEEEEECChhhc---------------Cc-C
Confidence 35899999999999999999887 588999999999888877421 34445565432 11 2
Q ss_pred CccceEEecCCCCccccccccchhhhcccccchHHHHHHHhhhcCCcEEEEccccccccccchhHHHHHHHHHHcCCCEE
Q psy12304 193 HEVDLIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLSFCDLFQPKYIILENVTGLVHFNKNEILQCIFHCLLKMNYQV 272 (620)
Q Consensus 193 ~~vD~i~gGpPCQ~fS~~~~~~~~~~~d~r~~L~~~~~~~i~~~~P~~~v~ENV~gl~~~~~~~~~~~i~~~l~~~GY~v 272 (620)
+.+|+|++.++... ...++ -.+.+.++|.-.++= .++.. .....+.+.|.+.||.+
T Consensus 183 ~~fD~Vv~n~~~~~---------------~~~~l---~~~~~~LkpgG~lil--s~~~~----~~~~~v~~~l~~~Gf~~ 238 (254)
T 2nxc_A 183 GPFDLLVANLYAEL---------------HAALA---PRYREALVPGGRALL--TGILK----DRAPLVREAMAGAGFRP 238 (254)
T ss_dssp CCEEEEEEECCHHH---------------HHHHH---HHHHHHEEEEEEEEE--EEEEG----GGHHHHHHHHHHTTCEE
T ss_pred CCCCEEEECCcHHH---------------HHHHH---HHHHHHcCCCCEEEE--Eeecc----CCHHHHHHHHHHCCCEE
Confidence 46899998654210 01122 234456778654331 23322 23567788888999987
Q ss_pred EEE
Q psy12304 273 TFD 275 (620)
Q Consensus 273 ~~~ 275 (620)
...
T Consensus 239 ~~~ 241 (254)
T 2nxc_A 239 LEE 241 (254)
T ss_dssp EEE
T ss_pred EEE
Confidence 544
No 107
>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54
Probab=95.16 E-value=0.023 Score=55.94 Aligned_cols=79 Identities=14% Similarity=0.111 Sum_probs=52.1
Q ss_pred CcceecccccccHHHHHHHhc--CCCccEEEEcCchhHHHHHHHhcCC------CcccccchHHHHHHhhcccccccCcC
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQA--GVAKPCWSVELERSEAASYDANFQE------CSVIQDDCNLVLKSLLKGHTQHKGVS 188 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~a--G~~~~~~a~e~d~~a~~ty~~N~p~------~~~~~~di~~~~~~~~~~~~~~~~~~ 188 (620)
..++||++||.|+++.-+... +. .+.++|+++.+++.-+.|... ..++.+|+.+. ....
T Consensus 66 ~~~vLDlG~G~G~~~~~la~~~~~~--~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----------~~~~ 132 (254)
T 2h00_A 66 LRRGIDIGTGASCIYPLLGATLNGW--YFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTL-----------LMDA 132 (254)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHHCC--EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCS-----------STTT
T ss_pred CCEEEEeCCChhHHHHHHHHhCCCC--eEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhh-----------hhhh
Confidence 458999999999988777654 44 488999999999888777421 33444454320 0011
Q ss_pred CCC--CCccceEEecCCCCccc
Q psy12304 189 LPQ--KHEVDLIVAGPPCQGFS 208 (620)
Q Consensus 189 ~p~--~~~vD~i~gGpPCQ~fS 208 (620)
++. .+.+|+|+..||+-...
T Consensus 133 ~~~~~~~~fD~i~~npp~~~~~ 154 (254)
T 2h00_A 133 LKEESEIIYDFCMCNPPFFANQ 154 (254)
T ss_dssp STTCCSCCBSEEEECCCCC---
T ss_pred hhcccCCcccEEEECCCCccCc
Confidence 222 14799999999987654
No 108
>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*
Probab=95.11 E-value=0.4 Score=48.09 Aligned_cols=150 Identities=15% Similarity=0.229 Sum_probs=94.1
Q ss_pred CcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcCC---------CcccccchHHHHHHhhcccccccCc
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQE---------CSVIQDDCNLVLKSLLKGHTQHKGV 187 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p~---------~~~~~~di~~~~~~~~~~~~~~~~~ 187 (620)
..++||+-||.|++..-+....-..-+.++|+|+.+++.-+.+++. ..++.+|+.+.+..
T Consensus 79 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~----------- 147 (283)
T 2i7c_A 79 PKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLEN----------- 147 (283)
T ss_dssp CCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHH-----------
T ss_pred CCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHh-----------
Confidence 3589999999999999887653124688999999999999988753 34566777665321
Q ss_pred CCCCCCccceEEecCCCCccccccccchhhhcccccchH-HHHHH-HhhhcCCcEEEEccccccccccchhHHHHHHHHH
Q psy12304 188 SLPQKHEVDLIVAGPPCQGFSQLNRARELEKSKLKNGLV-FTFLS-FCDLFQPKYIILENVTGLVHFNKNEILQCIFHCL 265 (620)
Q Consensus 188 ~~p~~~~vD~i~gGpPCQ~fS~~~~~~~~~~~d~r~~L~-~~~~~-~i~~~~P~~~v~ENV~gl~~~~~~~~~~~i~~~l 265 (620)
..+.+|+|+..++.. + +. ...|+ .++++ +.+.++|.-+++=|..... .....+..+.+.|
T Consensus 148 ---~~~~fD~Ii~d~~~~-~---~~---------~~~l~~~~~l~~~~~~L~pgG~lv~~~~~~~--~~~~~~~~~~~~l 209 (283)
T 2i7c_A 148 ---VTNTYDVIIVDSSDP-I---GP---------AETLFNQNFYEKIYNALKPNGYCVAQCESLW--IHVGTIKNMIGYA 209 (283)
T ss_dssp ---CCSCEEEEEEECCCT-T---TG---------GGGGSSHHHHHHHHHHEEEEEEEEEECCCTT--TCHHHHHHHHHHH
T ss_pred ---CCCCceEEEEcCCCC-C---Cc---------chhhhHHHHHHHHHHhcCCCcEEEEECCCcc--cCHHHHHHHHHHH
Confidence 124789999876532 1 11 01122 33443 3456789887776654322 1235577778888
Q ss_pred HcCCCEEEEEEEecCCCCCcccccEEEEEEecC
Q psy12304 266 LKMNYQVTFDVLQSGNYGVAQSRNRVVILASKP 298 (620)
Q Consensus 266 ~~~GY~v~~~~l~A~~yGvPQ~R~R~fivg~~~ 298 (620)
.+.--.+......--.|.. -.-.|++|++.
T Consensus 210 ~~~F~~v~~~~~~vP~y~~---g~~g~~~~s~~ 239 (283)
T 2i7c_A 210 KKLFKKVEYANISIPTYPC---GCIGILCCSKT 239 (283)
T ss_dssp HTTCSEEEEEEEECTTSGG---GEEEEEEEESS
T ss_pred HHHCCceEEEEEEcCCcCC---CcEEEEEEeCC
Confidence 7765455544444333321 22468888764
No 109
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A
Probab=95.06 E-value=0.078 Score=50.52 Aligned_cols=45 Identities=16% Similarity=0.193 Sum_probs=38.6
Q ss_pred CcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcC
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQ 161 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p 161 (620)
..++||+-||.|.++..+...|....+.++|+++.+++..+.|..
T Consensus 30 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~ 74 (217)
T 3jwh_A 30 ARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLD 74 (217)
T ss_dssp CCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHT
T ss_pred CCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHH
Confidence 348999999999999999987642468999999999999988864
No 110
>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}
Probab=95.06 E-value=0.025 Score=59.94 Aligned_cols=72 Identities=17% Similarity=0.137 Sum_probs=50.4
Q ss_pred CcceecccccccHHHHHHHhcCCC--------------------------------------ccEEEEcCchhHHHHHHH
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQAGVA--------------------------------------KPCWSVELERSEAASYDA 158 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~aG~~--------------------------------------~~~~a~e~d~~a~~ty~~ 158 (620)
.-+++|+|||.|++.+-+...+.. ..++++|+|+.+++.-+.
T Consensus 202 ~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~al~~Ar~ 281 (393)
T 3k0b_A 202 DRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDIDARLIEIAKQ 281 (393)
T ss_dssp TSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHHHH
T ss_pred CCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEECCHHHHHHHHH
Confidence 357999999999988665543320 138999999999999988
Q ss_pred hcCC------CcccccchHHHHHHhhcccccccCcCCCCCCccceEEecCCC
Q psy12304 159 NFQE------CSVIQDDCNLVLKSLLKGHTQHKGVSLPQKHEVDLIVAGPPC 204 (620)
Q Consensus 159 N~p~------~~~~~~di~~~~~~~~~~~~~~~~~~~p~~~~vD~i~gGpPC 204 (620)
|... ..+.++|+.+ ++..+.+|+|+.-||-
T Consensus 282 Na~~~gl~~~I~~~~~D~~~----------------~~~~~~fD~Iv~NPPY 317 (393)
T 3k0b_A 282 NAVEAGLGDLITFRQLQVAD----------------FQTEDEYGVVVANPPY 317 (393)
T ss_dssp HHHHTTCTTCSEEEECCGGG----------------CCCCCCSCEEEECCCC
T ss_pred HHHHcCCCCceEEEECChHh----------------CCCCCCCCEEEECCCC
Confidence 8421 3344455432 2234579999999993
No 111
>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=94.99 E-value=0.086 Score=51.09 Aligned_cols=70 Identities=14% Similarity=0.100 Sum_probs=52.9
Q ss_pred CcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhc----CCCcccccchHHHHHHhhcccccccCcCCCCC
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANF----QECSVIQDDCNLVLKSLLKGHTQHKGVSLPQK 192 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~----p~~~~~~~di~~~~~~~~~~~~~~~~~~~p~~ 192 (620)
..++||+-||.|.++.-+...+. ..++++|+++.+++.-+.+. ++..++.+|+.+++. .++ .
T Consensus 61 ~~~vLDiGcGtG~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~------------~~~-~ 126 (236)
T 1zx0_A 61 GGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAP------------TLP-D 126 (236)
T ss_dssp CEEEEEECCTTSHHHHHHHTSCE-EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGG------------GSC-T
T ss_pred CCeEEEEeccCCHHHHHHHhcCC-CeEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhc------------ccC-C
Confidence 46899999999999999987776 56899999999998888876 334556677765421 122 2
Q ss_pred CccceEEe
Q psy12304 193 HEVDLIVA 200 (620)
Q Consensus 193 ~~vD~i~g 200 (620)
+.+|+|+.
T Consensus 127 ~~fD~V~~ 134 (236)
T 1zx0_A 127 GHFDGILY 134 (236)
T ss_dssp TCEEEEEE
T ss_pred CceEEEEE
Confidence 57999987
No 112
>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*
Probab=94.96 E-value=0.05 Score=52.50 Aligned_cols=78 Identities=13% Similarity=0.158 Sum_probs=56.7
Q ss_pred CcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHh-----cCCCcccccchHHHHHHhhcccccccCcCCCC
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDAN-----FQECSVIQDDCNLVLKSLLKGHTQHKGVSLPQ 191 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N-----~p~~~~~~~di~~~~~~~~~~~~~~~~~~~p~ 191 (620)
.-++||+.||.|.+++.+...+-...+.++|+++.+++.-+.| ..+..++.+|+.+++... + .
T Consensus 35 ~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~-----------~-~ 102 (218)
T 3dxy_A 35 APVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKM-----------I-P 102 (218)
T ss_dssp CCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHH-----------S-C
T ss_pred CCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHH-----------c-C
Confidence 3479999999999999988764313588999999988776665 345667788987764321 1 2
Q ss_pred CCccceEEecCCCCc
Q psy12304 192 KHEVDLIVAGPPCQG 206 (620)
Q Consensus 192 ~~~vD~i~gGpPCQ~ 206 (620)
.+.+|.|+.-+|..-
T Consensus 103 ~~~~d~v~~~~~~p~ 117 (218)
T 3dxy_A 103 DNSLRMVQLFFPDPW 117 (218)
T ss_dssp TTCEEEEEEESCCCC
T ss_pred CCChheEEEeCCCCc
Confidence 357899998877653
No 113
>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A
Probab=94.93 E-value=0.21 Score=48.20 Aligned_cols=145 Identities=12% Similarity=0.024 Sum_probs=81.4
Q ss_pred CcceecccccccHHHHHHHhc-CCCccEEEEcCchhHHHHHHHhcC---CCcccccchHHHHHHhhcccccccCcCCCCC
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQA-GVAKPCWSVELERSEAASYDANFQ---ECSVIQDDCNLVLKSLLKGHTQHKGVSLPQK 192 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~a-G~~~~~~a~e~d~~a~~ty~~N~p---~~~~~~~di~~~~~~~~~~~~~~~~~~~p~~ 192 (620)
..++||+.||.|.++.-+... |- ..++++|+++.+++..+.|.. +...+.+|+... ...++..
T Consensus 75 ~~~VLDlGcG~G~~~~~la~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~------------~~~~~~~ 141 (230)
T 1fbn_A 75 DSKILYLGASAGTTPSHVADIADK-GIVYAIEYAPRIMRELLDACAERENIIPILGDANKP------------QEYANIV 141 (230)
T ss_dssp TCEEEEESCCSSHHHHHHHHHTTT-SEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCG------------GGGTTTS
T ss_pred CCEEEEEcccCCHHHHHHHHHcCC-cEEEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCc------------ccccccC
Confidence 458999999999999888775 63 468999999999988877753 233334454321 0002222
Q ss_pred CccceEEecCCCCccccccccchhhhcccccchHHHH-HHHhhhcCCcE-EEEccccc--cc-cccchhHHHHHHHHHHc
Q psy12304 193 HEVDLIVAGPPCQGFSQLNRARELEKSKLKNGLVFTF-LSFCDLFQPKY-IILENVTG--LV-HFNKNEILQCIFHCLLK 267 (620)
Q Consensus 193 ~~vD~i~gGpPCQ~fS~~~~~~~~~~~d~r~~L~~~~-~~~i~~~~P~~-~v~ENV~g--l~-~~~~~~~~~~i~~~l~~ 267 (620)
+.+|+|+..+| . . .....+ -.+.+.++|.- +++. +.. .- ......++..-+..|.+
T Consensus 142 ~~~D~v~~~~~-----~------~-------~~~~~~l~~~~~~LkpgG~l~i~-~~~~~~~~~~~~~~~~~~~l~~l~~ 202 (230)
T 1fbn_A 142 EKVDVIYEDVA-----Q------P-------NQAEILIKNAKWFLKKGGYGMIA-IKARSIDVTKDPKEIFKEQKEILEA 202 (230)
T ss_dssp CCEEEEEECCC-----S------T-------THHHHHHHHHHHHEEEEEEEEEE-EEGGGTCSSSCHHHHHHHHHHHHHH
T ss_pred ccEEEEEEecC-----C------h-------hHHHHHHHHHHHhCCCCcEEEEE-EecCCCCCCCCHHHhhHHHHHHHHH
Confidence 57899983221 0 0 011222 23344677753 3332 211 00 00111234333347788
Q ss_pred CCCEEEEEEEecCCCCCcccccEEEEEEecC
Q psy12304 268 MNYQVTFDVLQSGNYGVAQSRNRVVILASKP 298 (620)
Q Consensus 268 ~GY~v~~~~l~A~~yGvPQ~R~R~fivg~~~ 298 (620)
.||.+.... +- -|..+...++++.++
T Consensus 203 ~Gf~~~~~~-~~----~~~~~~~~~v~~~k~ 228 (230)
T 1fbn_A 203 GGFKIVDEV-DI----EPFEKDHVMFVGIWE 228 (230)
T ss_dssp HTEEEEEEE-EC----TTTSTTEEEEEEEEC
T ss_pred CCCEEEEEE-cc----CCCccceEEEEEEeC
Confidence 899764332 21 244678888888764
No 114
>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*
Probab=94.90 E-value=0.016 Score=58.83 Aligned_cols=70 Identities=23% Similarity=0.249 Sum_probs=54.2
Q ss_pred CcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhc---CCCcccccchHHHHHHhhcccccccCcCCCCCC
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANF---QECSVIQDDCNLVLKSLLKGHTQHKGVSLPQKH 193 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~---p~~~~~~~di~~~~~~~~~~~~~~~~~~~p~~~ 193 (620)
.-++||+-||.|.++..|...|. -+.|+|+|+..++..+.++ ++..++++|+.++ .++ ..
T Consensus 51 ~~~VLEIG~G~G~lT~~La~~~~--~V~aVEid~~li~~a~~~~~~~~~v~vi~gD~l~~--------------~~~-~~ 113 (295)
T 3gru_A 51 DDVVLEIGLGKGILTEELAKNAK--KVYVIEIDKSLEPYANKLKELYNNIEIIWGDALKV--------------DLN-KL 113 (295)
T ss_dssp TCEEEEECCTTSHHHHHHHHHSS--EEEEEESCGGGHHHHHHHHHHCSSEEEEESCTTTS--------------CGG-GS
T ss_pred cCEEEEECCCchHHHHHHHhcCC--EEEEEECCHHHHHHHHHHhccCCCeEEEECchhhC--------------Ccc-cC
Confidence 34799999999999999998874 4889999999998888776 5666777776432 122 12
Q ss_pred ccceEEecCC
Q psy12304 194 EVDLIVAGPP 203 (620)
Q Consensus 194 ~vD~i~gGpP 203 (620)
.+|+|++.+|
T Consensus 114 ~fD~Iv~NlP 123 (295)
T 3gru_A 114 DFNKVVANLP 123 (295)
T ss_dssp CCSEEEEECC
T ss_pred CccEEEEeCc
Confidence 4899999888
No 115
>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*
Probab=94.88 E-value=0.22 Score=48.94 Aligned_cols=148 Identities=14% Similarity=0.143 Sum_probs=86.1
Q ss_pred CCcceecccccccHHHHHHHhc-CCCccEEEEcCchhHHHHHHHhc-----CCCcccccchHHHHHHhhcccccccCcCC
Q psy12304 116 TPLKCLDLFSGCGGLMEGLCQA-GVAKPCWSVELERSEAASYDANF-----QECSVIQDDCNLVLKSLLKGHTQHKGVSL 189 (620)
Q Consensus 116 ~~l~~~dLFsG~Gg~s~Gl~~a-G~~~~~~a~e~d~~a~~ty~~N~-----p~~~~~~~di~~~~~~~~~~~~~~~~~~~ 189 (620)
...+++|+.||.|..++-+... +- ..+.++|+++.+++..+.|. .+..++++|+.++.. ..
T Consensus 80 ~~~~vLDiG~G~G~~~i~la~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~-----------~~- 146 (249)
T 3g89_A 80 GPLRVLDLGTGAGFPGLPLKIVRPE-LELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAR-----------EA- 146 (249)
T ss_dssp SSCEEEEETCTTTTTHHHHHHHCTT-CEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTT-----------ST-
T ss_pred CCCEEEEEcCCCCHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhc-----------cc-
Confidence 3458999999999988877765 22 25889999999999888774 345566777765510 00
Q ss_pred CCCCccceEEecCCCCccccccccchhhhcccccchHHHHHHH-hhhcCCcE--EEEccccccccccchhHHHHHHHHHH
Q psy12304 190 PQKHEVDLIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLSF-CDLFQPKY--IILENVTGLVHFNKNEILQCIFHCLL 266 (620)
Q Consensus 190 p~~~~vD~i~gGpPCQ~fS~~~~~~~~~~~d~r~~L~~~~~~~-i~~~~P~~--~v~ENV~gl~~~~~~~~~~~i~~~l~ 266 (620)
...+.+|+|+..- + .+ +..+++. ...++|.- +++.... ...-+..+...+.
T Consensus 147 ~~~~~fD~I~s~a----~-----------~~-----~~~ll~~~~~~LkpgG~l~~~~g~~------~~~e~~~~~~~l~ 200 (249)
T 3g89_A 147 GHREAYARAVARA----V-----------AP-----LCVLSELLLPFLEVGGAAVAMKGPR------VEEELAPLPPALE 200 (249)
T ss_dssp TTTTCEEEEEEES----S-----------CC-----HHHHHHHHGGGEEEEEEEEEEECSC------CHHHHTTHHHHHH
T ss_pred ccCCCceEEEECC----c-----------CC-----HHHHHHHHHHHcCCCeEEEEEeCCC------cHHHHHHHHHHHH
Confidence 0125799998521 1 00 1223332 24567754 3333221 1233455667777
Q ss_pred cCCCEEEEEEEecCCCCCcc-cccEEEEEEecCCCCCCCCC
Q psy12304 267 KMNYQVTFDVLQSGNYGVAQ-SRNRVVILASKPGYKLPSFP 306 (620)
Q Consensus 267 ~~GY~v~~~~l~A~~yGvPQ-~R~R~fivg~~~~~~~p~~P 306 (620)
.+|+.+.... .|.+|. .-.|.+++..+.......+|
T Consensus 201 ~~G~~~~~~~----~~~~p~~~~~R~l~~~~k~~~t~~~yP 237 (249)
T 3g89_A 201 RLGGRLGEVL----ALQLPLSGEARHLVVLEKTAPTPPAYP 237 (249)
T ss_dssp HHTEEEEEEE----EEECTTTCCEEEEEEEEECSCCCTTCS
T ss_pred HcCCeEEEEE----EeeCCCCCCcEEEEEEEeCCCCCCCCC
Confidence 8888764322 334554 24577777666543333444
No 116
>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*
Probab=94.81 E-value=0.099 Score=51.15 Aligned_cols=111 Identities=14% Similarity=0.101 Sum_probs=72.4
Q ss_pred CcceecccccccHHHHHHHhc-CCCccEEEEcCchhHHHHHHHhc-----CC-CcccccchHHHHHHhhcccccccCcCC
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQA-GVAKPCWSVELERSEAASYDANF-----QE-CSVIQDDCNLVLKSLLKGHTQHKGVSL 189 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~a-G~~~~~~a~e~d~~a~~ty~~N~-----p~-~~~~~~di~~~~~~~~~~~~~~~~~~~ 189 (620)
.-+++|+.||.|.++..+... |-...+.++|+++.+++.-+.|. ++ ..+..+|+.+ .+
T Consensus 94 ~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~---------------~~ 158 (255)
T 3mb5_A 94 GDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYE---------------GI 158 (255)
T ss_dssp TCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGG---------------CC
T ss_pred CCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhh---------------cc
Confidence 458999999999999999887 42135899999999988887774 23 4455556532 12
Q ss_pred CCCCccceEEecCCCCccccccccchhhhcccccchHHHHHHHhhhcCCcEEEEccccccccccchhHHHHHHHHHHcCC
Q psy12304 190 PQKHEVDLIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLSFCDLFQPKYIILENVTGLVHFNKNEILQCIFHCLLKMN 269 (620)
Q Consensus 190 p~~~~vD~i~gGpPCQ~fS~~~~~~~~~~~d~r~~L~~~~~~~i~~~~P~~~v~ENV~gl~~~~~~~~~~~i~~~l~~~G 269 (620)
+ .+.+|+|+..+|+. ..++.+ +.+.++|.-.++=.++.. .....+.+.|.+.|
T Consensus 159 ~-~~~~D~v~~~~~~~-----------------~~~l~~---~~~~L~~gG~l~~~~~~~------~~~~~~~~~l~~~g 211 (255)
T 3mb5_A 159 E-EENVDHVILDLPQP-----------------ERVVEH---AAKALKPGGFFVAYTPCS------NQVMRLHEKLREFK 211 (255)
T ss_dssp C-CCSEEEEEECSSCG-----------------GGGHHH---HHHHEEEEEEEEEEESSH------HHHHHHHHHHHHTG
T ss_pred C-CCCcCEEEECCCCH-----------------HHHHHH---HHHHcCCCCEEEEEECCH------HHHHHHHHHHHHcC
Confidence 2 34699999877743 112333 334567765544333322 33566777888888
No 117
>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}
Probab=94.80 E-value=0.024 Score=53.70 Aligned_cols=72 Identities=17% Similarity=0.119 Sum_probs=53.6
Q ss_pred CcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcCC---CcccccchHHHHHHhhcccccccCcCCCCCC
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQE---CSVIQDDCNLVLKSLLKGHTQHKGVSLPQKH 193 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p~---~~~~~~di~~~~~~~~~~~~~~~~~~~p~~~ 193 (620)
..++||+.||.|.++.-+...|. ..+.++|+++.+++.-+.+... ..+..+|+.++ .+ ..+
T Consensus 43 ~~~vLdiGcG~G~~~~~l~~~~~-~~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~~~~--------------~~-~~~ 106 (215)
T 2pxx_A 43 EDRILVLGCGNSALSYELFLGGF-PNVTSVDYSSVVVAAMQACYAHVPQLRWETMDVRKL--------------DF-PSA 106 (215)
T ss_dssp TCCEEEETCTTCSHHHHHHHTTC-CCEEEEESCHHHHHHHHHHTTTCTTCEEEECCTTSC--------------CS-CSS
T ss_pred CCeEEEECCCCcHHHHHHHHcCC-CcEEEEeCCHHHHHHHHHhcccCCCcEEEEcchhcC--------------CC-CCC
Confidence 45799999999999999999987 4799999999999999888743 33444444211 12 135
Q ss_pred ccceEEecCCC
Q psy12304 194 EVDLIVAGPPC 204 (620)
Q Consensus 194 ~vD~i~gGpPC 204 (620)
.+|+|+...+.
T Consensus 107 ~fD~v~~~~~~ 117 (215)
T 2pxx_A 107 SFDVVLEKGTL 117 (215)
T ss_dssp CEEEEEEESHH
T ss_pred cccEEEECcch
Confidence 79999986654
No 118
>3adn_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, polyamine biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} PDB: 3o4f_A
Probab=94.78 E-value=0.13 Score=52.17 Aligned_cols=149 Identities=13% Similarity=0.088 Sum_probs=88.6
Q ss_pred CcceecccccccHHHHHHHhc-CCCccEEEEcCchhHHHHHHHhcC----------CCcccccchHHHHHHhhccccccc
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQA-GVAKPCWSVELERSEAASYDANFQ----------ECSVIQDDCNLVLKSLLKGHTQHK 185 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~a-G~~~~~~a~e~d~~a~~ty~~N~p----------~~~~~~~di~~~~~~~~~~~~~~~ 185 (620)
+-++|||.||.|+++.-+... +. .-+.++|+|+.+++.-+.|++ ...++.+|..+.+.
T Consensus 84 ~~~VLdiG~G~G~~~~~l~~~~~~-~~V~~VDid~~vi~~ar~~~~~~~~~~~~~~rv~~~~~D~~~~l~---------- 152 (294)
T 3adn_A 84 AKHVLIIGGGDGAMLREVTRHKNV-ESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVN---------- 152 (294)
T ss_dssp CCEEEEESCTTCHHHHHHHTCTTC-CEEEEECSCTTHHHHHHHHCHHHHSSCTTCTTCCEECSCSCC-------------
T ss_pred CCEEEEEeCChhHHHHHHHhCCCC-CEEEEEECCHHHHHHHHHhhhhcccccccCCceEEEEChHHHHHh----------
Confidence 348999999999999888875 44 568899999999999888764 33455555533211
Q ss_pred CcCCCCCCccceEEecCCCCccccccccchhhhcccccch-HHHHHH-HhhhcCCcEEEEccccccccccchhHHHHHHH
Q psy12304 186 GVSLPQKHEVDLIVAGPPCQGFSQLNRARELEKSKLKNGL-VFTFLS-FCDLFQPKYIILENVTGLVHFNKNEILQCIFH 263 (620)
Q Consensus 186 ~~~~p~~~~vD~i~gGpPCQ~fS~~~~~~~~~~~d~r~~L-~~~~~~-~i~~~~P~~~v~ENV~gl~~~~~~~~~~~i~~ 263 (620)
. ..+.+|+|+.-+|.. +... ..| -.++++ +.+.++|.-+++=|...... ....+..++.
T Consensus 153 --~--~~~~fDvIi~D~~~p-~~~~------------~~l~~~~f~~~~~~~LkpgG~lv~~~~s~~~--~~~~~~~~~~ 213 (294)
T 3adn_A 153 --Q--TSQTFDVIISDCTDP-IGPG------------ESLFTSAFYEGCKRCLNPGGIFVAQNGVCFL--QQEEAIDSHR 213 (294)
T ss_dssp --C--CCCCEEEEEECC-----------------------CCHHHHHHHHHTEEEEEEEEEEEEECSS--CCHHHHHHHH
T ss_pred --h--cCCCccEEEECCCCc-cCcc------------hhccHHHHHHHHHHhcCCCCEEEEecCCccc--chHHHHHHHH
Confidence 0 135799999976632 1111 011 123333 44567999888777643221 2245677777
Q ss_pred HHHcCCCEEEEEEEecCCCCCcccccEEEEEEecC
Q psy12304 264 CLLKMNYQVTFDVLQSGNYGVAQSRNRVVILASKP 298 (620)
Q Consensus 264 ~l~~~GY~v~~~~l~A~~yGvPQ~R~R~fivg~~~ 298 (620)
.+.+..-.+......--.| | .-.-.|++|++.
T Consensus 214 ~l~~~F~~v~~~~~~vp~~--p-~g~~~f~~as~~ 245 (294)
T 3adn_A 214 KLSHYFSDVGFYQAAIPTY--Y-GGIMTFAWATDN 245 (294)
T ss_dssp HHHHHCSEEEEEEEECTTS--S-SSEEEEEEEESC
T ss_pred HHHHHCCCeEEEEEEeccc--C-CCceEEEEEeCC
Confidence 7776644555444333333 0 134678888764
No 119
>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24
Probab=94.74 E-value=0.013 Score=59.16 Aligned_cols=73 Identities=25% Similarity=0.206 Sum_probs=54.8
Q ss_pred CcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcCC------CcccccchHHHHHHhhcccccccCcCCC
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQE------CSVIQDDCNLVLKSLLKGHTQHKGVSLP 190 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p~------~~~~~~di~~~~~~~~~~~~~~~~~~~p 190 (620)
.-++||+.||.|.++..|...|. -+.++|+|+.+++..+.+... ..++.+|+.++ .++
T Consensus 29 ~~~VLDiG~G~G~lt~~L~~~~~--~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~--------------~~~ 92 (285)
T 1zq9_A 29 TDVVLEVGPGTGNMTVKLLEKAK--KVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKT--------------DLP 92 (285)
T ss_dssp TCEEEEECCTTSTTHHHHHHHSS--EEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTS--------------CCC
T ss_pred CCEEEEEcCcccHHHHHHHhhCC--EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecc--------------cch
Confidence 34799999999999999998886 488999999999988887642 23444454211 222
Q ss_pred CCCccceEEecCCCCccc
Q psy12304 191 QKHEVDLIVAGPPCQGFS 208 (620)
Q Consensus 191 ~~~~vD~i~gGpPCQ~fS 208 (620)
.+|+|++.+|++..|
T Consensus 93 ---~fD~vv~nlpy~~~~ 107 (285)
T 1zq9_A 93 ---FFDTCVANLPYQISS 107 (285)
T ss_dssp ---CCSEEEEECCGGGHH
T ss_pred ---hhcEEEEecCcccch
Confidence 689999999986543
No 120
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A
Probab=94.74 E-value=0.095 Score=49.91 Aligned_cols=45 Identities=20% Similarity=0.180 Sum_probs=38.4
Q ss_pred CcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcC
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQ 161 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p 161 (620)
..++||+-||.|.++..+...|-..-+.++|+++.+++..+.+..
T Consensus 30 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~ 74 (219)
T 3jwg_A 30 AKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLK 74 (219)
T ss_dssp CCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHT
T ss_pred CCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHH
Confidence 358999999999999999987642358999999999999988864
No 121
>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}
Probab=94.72 E-value=0.027 Score=59.55 Aligned_cols=71 Identities=14% Similarity=0.255 Sum_probs=50.0
Q ss_pred CcceecccccccHHHHHHHhcCCC--------------------------------------ccEEEEcCchhHHHHHHH
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQAGVA--------------------------------------KPCWSVELERSEAASYDA 158 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~aG~~--------------------------------------~~~~a~e~d~~a~~ty~~ 158 (620)
..+++|+|||.|++.+.+...|.. ..++++|+|+.+++.-+.
T Consensus 196 ~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~ai~~Ar~ 275 (385)
T 3ldu_A 196 GRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDIDEESIDIARE 275 (385)
T ss_dssp TSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEESCHHHHHHHHH
T ss_pred CCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEECCHHHHHHHHH
Confidence 457999999999988776554320 148999999999999888
Q ss_pred hcCC------CcccccchHHHHHHhhcccccccCcCCCCCCccceEEecCC
Q psy12304 159 NFQE------CSVIQDDCNLVLKSLLKGHTQHKGVSLPQKHEVDLIVAGPP 203 (620)
Q Consensus 159 N~p~------~~~~~~di~~~~~~~~~~~~~~~~~~~p~~~~vD~i~gGpP 203 (620)
|... ..+.++|+.+ ++..+.+|+|+.-||
T Consensus 276 Na~~~gl~~~i~~~~~D~~~----------------l~~~~~~D~Iv~NPP 310 (385)
T 3ldu_A 276 NAEIAGVDEYIEFNVGDATQ----------------FKSEDEFGFIITNPP 310 (385)
T ss_dssp HHHHHTCGGGEEEEECCGGG----------------CCCSCBSCEEEECCC
T ss_pred HHHHcCCCCceEEEECChhh----------------cCcCCCCcEEEECCC
Confidence 8521 2233344422 233457999999999
No 122
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}
Probab=94.71 E-value=0.14 Score=49.98 Aligned_cols=72 Identities=13% Similarity=0.127 Sum_probs=54.8
Q ss_pred CCcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcC--CCcccccchHHHHHHhhcccccccCcCCCCCC
Q psy12304 116 TPLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQ--ECSVIQDDCNLVLKSLLKGHTQHKGVSLPQKH 193 (620)
Q Consensus 116 ~~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p--~~~~~~~di~~~~~~~~~~~~~~~~~~~p~~~ 193 (620)
...++||+-||.|.++.-+...|. ..+.++|+++.+++.-+.+.. +..+..+|+.++ .+ ..+
T Consensus 44 ~~~~vLD~GcG~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~--------------~~-~~~ 107 (253)
T 3g5l_A 44 NQKTVLDLGCGFGWHCIYAAEHGA-KKVLGIDLSERMLTEAKRKTTSPVVCYEQKAIEDI--------------AI-EPD 107 (253)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHCCCTTEEEEECCGGGC--------------CC-CTT
T ss_pred CCCEEEEECCCCCHHHHHHHHcCC-CEEEEEECCHHHHHHHHHhhccCCeEEEEcchhhC--------------CC-CCC
Confidence 456899999999999999999987 578999999999999888874 334455565321 11 135
Q ss_pred ccceEEecCC
Q psy12304 194 EVDLIVAGPP 203 (620)
Q Consensus 194 ~vD~i~gGpP 203 (620)
.+|+|+....
T Consensus 108 ~fD~v~~~~~ 117 (253)
T 3g5l_A 108 AYNVVLSSLA 117 (253)
T ss_dssp CEEEEEEESC
T ss_pred CeEEEEEchh
Confidence 7999998653
No 123
>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}
Probab=94.64 E-value=0.033 Score=58.78 Aligned_cols=72 Identities=13% Similarity=0.136 Sum_probs=50.1
Q ss_pred CcceecccccccHHHHHHHhcCCC--------------------------------------ccEEEEcCchhHHHHHHH
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQAGVA--------------------------------------KPCWSVELERSEAASYDA 158 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~aG~~--------------------------------------~~~~a~e~d~~a~~ty~~ 158 (620)
.-.++|.|||.|++.+-....+.. -.++++|+|+.+++.-+.
T Consensus 195 ~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDid~~al~~Ar~ 274 (384)
T 3ldg_A 195 DKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFDGRMVEIARK 274 (384)
T ss_dssp TSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHHHH
T ss_pred CCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEECCHHHHHHHHH
Confidence 357999999999988655543320 138999999999999988
Q ss_pred hcCC------CcccccchHHHHHHhhcccccccCcCCCCCCccceEEecCCC
Q psy12304 159 NFQE------CSVIQDDCNLVLKSLLKGHTQHKGVSLPQKHEVDLIVAGPPC 204 (620)
Q Consensus 159 N~p~------~~~~~~di~~~~~~~~~~~~~~~~~~~p~~~~vD~i~gGpPC 204 (620)
|.-. ..+.++|+.+ ++..+.+|+|+.-||-
T Consensus 275 Na~~~gl~~~I~~~~~D~~~----------------l~~~~~fD~Iv~NPPY 310 (384)
T 3ldg_A 275 NAREVGLEDVVKLKQMRLQD----------------FKTNKINGVLISNPPY 310 (384)
T ss_dssp HHHHTTCTTTEEEEECCGGG----------------CCCCCCSCEEEECCCC
T ss_pred HHHHcCCCCceEEEECChHH----------------CCccCCcCEEEECCch
Confidence 8521 2234445432 2233579999999994
No 124
>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42
Probab=94.64 E-value=0.11 Score=50.41 Aligned_cols=148 Identities=12% Similarity=0.016 Sum_probs=85.5
Q ss_pred CCcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcCC---CcccccchHHHHHHhhcccccccCcCCCCC
Q psy12304 116 TPLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQE---CSVIQDDCNLVLKSLLKGHTQHKGVSLPQK 192 (620)
Q Consensus 116 ~~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p~---~~~~~~di~~~~~~~~~~~~~~~~~~~p~~ 192 (620)
...++||+-||.|.++..+...|. ..+.++|+++.+++..+.+... ..+..+|+.++ .+ ..
T Consensus 93 ~~~~vLDiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~--------------~~-~~ 156 (254)
T 1xtp_A 93 GTSRALDCGAGIGRITKNLLTKLY-ATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETA--------------TL-PP 156 (254)
T ss_dssp CCSEEEEETCTTTHHHHHTHHHHC-SEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGC--------------CC-CS
T ss_pred CCCEEEEECCCcCHHHHHHHHhhc-CEEEEEeCCHHHHHHHHHHhccCCceEEEEccHHHC--------------CC-CC
Confidence 456899999999999999988875 5688999999999999888743 33444554321 11 23
Q ss_pred CccceEEecCCCCccccccccchhhhcccccchHHHHHHHhhhcCCc--EEEEcccccccc----ccc---hhHHHHHHH
Q psy12304 193 HEVDLIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLSFCDLFQPK--YIILENVTGLVH----FNK---NEILQCIFH 263 (620)
Q Consensus 193 ~~vD~i~gGpPCQ~fS~~~~~~~~~~~d~r~~L~~~~~~~i~~~~P~--~~v~ENV~gl~~----~~~---~~~~~~i~~ 263 (620)
+.+|+|+....-..++. .+ ...++. ++.+.++|. +++.+|+..-.. ... ......+.+
T Consensus 157 ~~fD~v~~~~~l~~~~~---------~~-~~~~l~---~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (254)
T 1xtp_A 157 NTYDLIVIQWTAIYLTD---------AD-FVKFFK---HCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKR 223 (254)
T ss_dssp SCEEEEEEESCGGGSCH---------HH-HHHHHH---HHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHH
T ss_pred CCeEEEEEcchhhhCCH---------HH-HHHHHH---HHHHhcCCCeEEEEEecCCCcccceecccCCcccCCHHHHHH
Confidence 57999997542111110 01 112232 334456774 455555322110 000 112466777
Q ss_pred HHHcCCCEEEEEEEecCCCCCcccccEEEEEE
Q psy12304 264 CLLKMNYQVTFDVLQSGNYGVAQSRNRVVILA 295 (620)
Q Consensus 264 ~l~~~GY~v~~~~l~A~~yGvPQ~R~R~fivg 295 (620)
.|.+.|+.+...... -+.|...-.+.+++
T Consensus 224 ~l~~aGf~~~~~~~~---~~~~~~~~~~~~~~ 252 (254)
T 1xtp_A 224 LFNESGVRVVKEAFQ---EEWPTDLFPLKMYA 252 (254)
T ss_dssp HHHHHTCCEEEEEEC---TTCCTTSCCEEEEE
T ss_pred HHHHCCCEEEEeeec---CCCCchhheEEEEE
Confidence 888899987544332 23455555555444
No 125
>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A
Probab=94.63 E-value=0.24 Score=47.47 Aligned_cols=75 Identities=13% Similarity=0.035 Sum_probs=49.8
Q ss_pred CcceecccccccHHHHHHHhc-CCCccEEEEcCchhHHHHHHHhc---CCCcccccchHHHHHHhhcccccccCcCCCCC
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQA-GVAKPCWSVELERSEAASYDANF---QECSVIQDDCNLVLKSLLKGHTQHKGVSLPQK 192 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~a-G~~~~~~a~e~d~~a~~ty~~N~---p~~~~~~~di~~~~~~~~~~~~~~~~~~~p~~ 192 (620)
.-+++|+.||.|.++.-+... |-...+.++|+++.+++....|. ++..++.+|+.+.. ...+..
T Consensus 74 ~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~------------~~~~~~ 141 (227)
T 1g8a_A 74 GKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPE------------EYRALV 141 (227)
T ss_dssp TCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGG------------GGTTTC
T ss_pred CCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhccCCCEEEEccCCCcc------------hhhccc
Confidence 348999999999999988864 42135899999998877766654 34445555653210 001112
Q ss_pred CccceEEecCC
Q psy12304 193 HEVDLIVAGPP 203 (620)
Q Consensus 193 ~~vD~i~gGpP 203 (620)
+.+|+|+..+|
T Consensus 142 ~~~D~v~~~~~ 152 (227)
T 1g8a_A 142 PKVDVIFEDVA 152 (227)
T ss_dssp CCEEEEEECCC
T ss_pred CCceEEEECCC
Confidence 47999997766
No 126
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}
Probab=94.62 E-value=0.28 Score=46.72 Aligned_cols=44 Identities=14% Similarity=0.190 Sum_probs=39.0
Q ss_pred CcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcCC
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQE 162 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p~ 162 (620)
..++||+.||.|.++..+...|. + +.++|+++.+++..+.+...
T Consensus 31 ~~~vLdiG~G~G~~~~~l~~~~~-~-v~~vD~s~~~~~~a~~~~~~ 74 (235)
T 3sm3_A 31 DDEILDIGCGSGKISLELASKGY-S-VTGIDINSEAIRLAETAARS 74 (235)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTC-E-EEEEESCHHHHHHHHHHTTC
T ss_pred CCeEEEECCCCCHHHHHHHhCCC-e-EEEEECCHHHHHHHHHHHHh
Confidence 45899999999999999999987 4 88999999999999988754
No 127
>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A
Probab=94.60 E-value=0.039 Score=54.14 Aligned_cols=46 Identities=15% Similarity=0.174 Sum_probs=36.9
Q ss_pred CCcceecccccccHHHHHHHhc--CCCccEEEEcCchhHHHHHHHhcC
Q psy12304 116 TPLKCLDLFSGCGGLMEGLCQA--GVAKPCWSVELERSEAASYDANFQ 161 (620)
Q Consensus 116 ~~l~~~dLFsG~Gg~s~Gl~~a--G~~~~~~a~e~d~~a~~ty~~N~p 161 (620)
...+++|++||.|.+++.+... +-...++++|+++.+++.-+.|..
T Consensus 51 ~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~ 98 (250)
T 1o9g_A 51 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLA 98 (250)
T ss_dssp SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHH
Confidence 4578999999999999888765 111358899999999998887753
No 128
>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}
Probab=94.42 E-value=0.33 Score=46.63 Aligned_cols=66 Identities=17% Similarity=0.060 Sum_probs=48.3
Q ss_pred cceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhc----CCCcccccchHHHHHHhhcccccccCcCCCCCC
Q psy12304 118 LKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANF----QECSVIQDDCNLVLKSLLKGHTQHKGVSLPQKH 193 (620)
Q Consensus 118 l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~----p~~~~~~~di~~~~~~~~~~~~~~~~~~~p~~~ 193 (620)
.++||+.||.|.++.-+... . .+.++|+++.+++.-+.+. ++..+..+|+.+ ++..+
T Consensus 35 ~~vLdiG~G~G~~~~~l~~~-~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~----------------~~~~~ 95 (243)
T 3d2l_A 35 KRIADIGCGTGTATLLLADH-Y--EVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRE----------------LELPE 95 (243)
T ss_dssp CEEEEESCTTCHHHHHHTTT-S--EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCGGG----------------CCCSS
T ss_pred CeEEEecCCCCHHHHHHhhC-C--eEEEEECCHHHHHHHHHhhhhcCCceEEEEcChhh----------------cCCCC
Confidence 58999999999999988877 4 4889999999988877764 234444555532 22236
Q ss_pred ccceEEecC
Q psy12304 194 EVDLIVAGP 202 (620)
Q Consensus 194 ~vD~i~gGp 202 (620)
.+|+|+...
T Consensus 96 ~fD~v~~~~ 104 (243)
T 3d2l_A 96 PVDAITILC 104 (243)
T ss_dssp CEEEEEECT
T ss_pred CcCEEEEeC
Confidence 799998754
No 129
>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}
Probab=94.42 E-value=0.14 Score=49.92 Aligned_cols=115 Identities=13% Similarity=0.107 Sum_probs=72.9
Q ss_pred CcceecccccccHHHHHHHhc-CCCccEEEEcCchhHHHHHHHhc------CCCcccccchHHHHHHhhcccccccCcCC
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQA-GVAKPCWSVELERSEAASYDANF------QECSVIQDDCNLVLKSLLKGHTQHKGVSL 189 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~a-G~~~~~~a~e~d~~a~~ty~~N~------p~~~~~~~di~~~~~~~~~~~~~~~~~~~ 189 (620)
.-++||+.||.|.++..+... |-...+.++|+++.+++..+.|. ++..+..+|+.+. .+
T Consensus 97 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~--------------~~ 162 (258)
T 2pwy_A 97 GMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEA--------------EL 162 (258)
T ss_dssp TCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGC--------------CC
T ss_pred CCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhc--------------CC
Confidence 358999999999999999887 41135899999999988887774 2334445554321 12
Q ss_pred CCCCccceEEecCCCCccccccccchhhhcccccchHHHHHHHhhhcCCcEEEEccccccccccchhHHHHHHHHHHcCC
Q psy12304 190 PQKHEVDLIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLSFCDLFQPKYIILENVTGLVHFNKNEILQCIFHCLLKMN 269 (620)
Q Consensus 190 p~~~~vD~i~gGpPCQ~fS~~~~~~~~~~~d~r~~L~~~~~~~i~~~~P~~~v~ENV~gl~~~~~~~~~~~i~~~l~~~G 269 (620)
+ .+.+|+|+..+|+. ..++.+ +.+.++|.-.++=.++.. ..+..+++.|.+.|
T Consensus 163 ~-~~~~D~v~~~~~~~-----------------~~~l~~---~~~~L~~gG~l~~~~~~~------~~~~~~~~~l~~~g 215 (258)
T 2pwy_A 163 E-EAAYDGVALDLMEP-----------------WKVLEK---AALALKPDRFLVAYLPNI------TQVLELVRAAEAHP 215 (258)
T ss_dssp C-TTCEEEEEEESSCG-----------------GGGHHH---HHHHEEEEEEEEEEESCH------HHHHHHHHHHTTTT
T ss_pred C-CCCcCEEEECCcCH-----------------HHHHHH---HHHhCCCCCEEEEEeCCH------HHHHHHHHHHHHCC
Confidence 2 24799999865521 123333 334566754444333221 24667788888899
Q ss_pred CEE
Q psy12304 270 YQV 272 (620)
Q Consensus 270 Y~v 272 (620)
|..
T Consensus 216 f~~ 218 (258)
T 2pwy_A 216 FRL 218 (258)
T ss_dssp EEE
T ss_pred Cce
Confidence 874
No 130
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}
Probab=94.41 E-value=0.045 Score=54.69 Aligned_cols=72 Identities=24% Similarity=0.154 Sum_probs=54.2
Q ss_pred CCcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcC----CCcccccchHHHHHHhhcccccccCcCCCC
Q psy12304 116 TPLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQ----ECSVIQDDCNLVLKSLLKGHTQHKGVSLPQ 191 (620)
Q Consensus 116 ~~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p----~~~~~~~di~~~~~~~~~~~~~~~~~~~p~ 191 (620)
...++||+.||.|.++.-+...|. + +.++|+++.+++..+.+.. +..++.+|+.+ ++.
T Consensus 120 ~~~~vLD~GcG~G~~~~~l~~~g~-~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~----------------~~~ 181 (286)
T 3m70_A 120 SPCKVLDLGCGQGRNSLYLSLLGY-D-VTSWDHNENSIAFLNETKEKENLNISTALYDINA----------------ANI 181 (286)
T ss_dssp CSCEEEEESCTTCHHHHHHHHTTC-E-EEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGG----------------CCC
T ss_pred CCCcEEEECCCCCHHHHHHHHCCC-e-EEEEECCHHHHHHHHHHHHHcCCceEEEEecccc----------------ccc
Confidence 346899999999999999999987 4 8899999999888777653 33444555532 222
Q ss_pred CCccceEEecCCCC
Q psy12304 192 KHEVDLIVAGPPCQ 205 (620)
Q Consensus 192 ~~~vD~i~gGpPCQ 205 (620)
.+.+|+|+...+..
T Consensus 182 ~~~fD~i~~~~~~~ 195 (286)
T 3m70_A 182 QENYDFIVSTVVFM 195 (286)
T ss_dssp CSCEEEEEECSSGG
T ss_pred cCCccEEEEccchh
Confidence 46899999877544
No 131
>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*
Probab=94.33 E-value=0.07 Score=53.64 Aligned_cols=145 Identities=15% Similarity=0.136 Sum_probs=88.0
Q ss_pred cceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhc---------------CCCcccccchHHHHHHhhcccc
Q psy12304 118 LKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANF---------------QECSVIQDDCNLVLKSLLKGHT 182 (620)
Q Consensus 118 l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~---------------p~~~~~~~di~~~~~~~~~~~~ 182 (620)
.++|||.||.|+++..+...|. .-+.++|+|+.+++.-+.|+ +...++.+|..+.+..
T Consensus 77 ~~VLdiG~G~G~~~~~l~~~~~-~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~------ 149 (281)
T 1mjf_A 77 KRVLVIGGGDGGTVREVLQHDV-DEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN------ 149 (281)
T ss_dssp CEEEEEECTTSHHHHHHTTSCC-SEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHH------
T ss_pred CeEEEEcCCcCHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhcc------
Confidence 5899999999999999887775 56899999999999988876 2234555676554321
Q ss_pred cccCcCCCCCCccceEEecCCCCccccccccchhhhcccccch-HHHHH-HHhhhcCCcEEEEccccccccccchhHHHH
Q psy12304 183 QHKGVSLPQKHEVDLIVAGPPCQGFSQLNRARELEKSKLKNGL-VFTFL-SFCDLFQPKYIILENVTGLVHFNKNEILQC 260 (620)
Q Consensus 183 ~~~~~~~p~~~~vD~i~gGpPCQ~fS~~~~~~~~~~~d~r~~L-~~~~~-~~i~~~~P~~~v~ENV~gl~~~~~~~~~~~ 260 (620)
.+.+|+|+..+|+. ++.. ..| ..+++ .+.+.++|.-+++=|..... .....++.
T Consensus 150 ---------~~~fD~Ii~d~~~~-~~~~------------~~l~~~~~l~~~~~~L~pgG~lv~~~~~~~--~~~~~~~~ 205 (281)
T 1mjf_A 150 ---------NRGFDVIIADSTDP-VGPA------------KVLFSEEFYRYVYDALNNPGIYVTQAGSVY--LFTDELIS 205 (281)
T ss_dssp ---------CCCEEEEEEECCCC-C-----------------TTSHHHHHHHHHHEEEEEEEEEEEEETT--TSHHHHHH
T ss_pred ---------cCCeeEEEECCCCC-CCcc------------hhhhHHHHHHHHHHhcCCCcEEEEEcCCcc--cCHHHHHH
Confidence 23689999988863 2110 011 12233 23456789876665543321 12345666
Q ss_pred HHHHHHcCCCEEEEEEEecCCCCCccc-ccEEEEEEecC
Q psy12304 261 IFHCLLKMNYQVTFDVLQSGNYGVAQS-RNRVVILASKP 298 (620)
Q Consensus 261 i~~~l~~~GY~v~~~~l~A~~yGvPQ~-R~R~fivg~~~ 298 (620)
+.+.+.+..=.+...... +|.. ..-.|++|++.
T Consensus 206 ~~~~l~~~f~~v~~~~~~-----vP~~~g~~~~~~as~~ 239 (281)
T 1mjf_A 206 AYKEMKKVFDRVYYYSFP-----VIGYASPWAFLVGVKG 239 (281)
T ss_dssp HHHHHHHHCSEEEEEEEC-----CTTSSSSEEEEEEEES
T ss_pred HHHHHHHHCCceEEEEEe-----cCCCCceEEEEEeeCC
Confidence 666666543233332221 2332 44667778764
No 132
>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}
Probab=94.29 E-value=0.044 Score=57.62 Aligned_cols=72 Identities=15% Similarity=0.148 Sum_probs=51.3
Q ss_pred cceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcCCC--------cccccchHHHHHHhhcccccccCcCC
Q psy12304 118 LKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQEC--------SVIQDDCNLVLKSLLKGHTQHKGVSL 189 (620)
Q Consensus 118 l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p~~--------~~~~~di~~~~~~~~~~~~~~~~~~~ 189 (620)
-+++||+||.|.+++.+...+-...+.++|+++.+++.-+.|.... .++.+|+. ..+
T Consensus 224 ~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~---------------~~~ 288 (375)
T 4dcm_A 224 GEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNAL---------------SGV 288 (375)
T ss_dssp SEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTT---------------TTC
T ss_pred CeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhh---------------ccC
Confidence 6899999999999999998742135899999999998888775321 11233331 112
Q ss_pred CCCCccceEEecCCCC
Q psy12304 190 PQKHEVDLIVAGPPCQ 205 (620)
Q Consensus 190 p~~~~vD~i~gGpPCQ 205 (620)
+ .+.+|+|+..||..
T Consensus 289 ~-~~~fD~Ii~nppfh 303 (375)
T 4dcm_A 289 E-PFRFNAVLCNPPFH 303 (375)
T ss_dssp C-TTCEEEEEECCCC-
T ss_pred C-CCCeeEEEECCCcc
Confidence 2 35799999999964
No 133
>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E
Probab=94.16 E-value=0.056 Score=52.93 Aligned_cols=80 Identities=20% Similarity=0.226 Sum_probs=53.4
Q ss_pred CCcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHh-------------cCCCcccccchHHHHHHhhcccc
Q psy12304 116 TPLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDAN-------------FQECSVIQDDCNLVLKSLLKGHT 182 (620)
Q Consensus 116 ~~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N-------------~p~~~~~~~di~~~~~~~~~~~~ 182 (620)
..-++||++||.|++++.+...+-...+.++|+++.+++.-+.| .++..++.+|+.+.+.
T Consensus 49 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~------- 121 (246)
T 2vdv_E 49 KKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLP------- 121 (246)
T ss_dssp CCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGG-------
T ss_pred CCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHH-------
Confidence 34589999999999999998876422588999999988766554 2344455566543210
Q ss_pred cccCcCCCCCCccceEEecCCCCcc
Q psy12304 183 QHKGVSLPQKHEVDLIVAGPPCQGF 207 (620)
Q Consensus 183 ~~~~~~~p~~~~vD~i~gGpPCQ~f 207 (620)
..+ ..+.+|.|+.-.|...+
T Consensus 122 ----~~~-~~~~~d~v~~~~p~p~~ 141 (246)
T 2vdv_E 122 ----NFF-EKGQLSKMFFCFPDPHF 141 (246)
T ss_dssp ----GTS-CTTCEEEEEEESCCCC-
T ss_pred ----Hhc-cccccCEEEEECCCccc
Confidence 011 23578888877776443
No 134
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}
Probab=94.13 E-value=0.095 Score=51.45 Aligned_cols=73 Identities=16% Similarity=0.110 Sum_probs=53.7
Q ss_pred CcceecccccccHHHHHHHhc---CCCccEEEEcCchhHHHHHHHhcC------CCcccccchHHHHHHhhcccccccCc
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQA---GVAKPCWSVELERSEAASYDANFQ------ECSVIQDDCNLVLKSLLKGHTQHKGV 187 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~a---G~~~~~~a~e~d~~a~~ty~~N~p------~~~~~~~di~~~~~~~~~~~~~~~~~ 187 (620)
..++||+.||.|+.++-+..+ +. .+.++|+++.+++.-+.|+. +..++.+|+.+.+..
T Consensus 64 ~~~VLdiG~G~G~~~~~la~~~~~~~--~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~----------- 130 (248)
T 3tfw_A 64 AKRILEIGTLGGYSTIWMARELPADG--QLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLES----------- 130 (248)
T ss_dssp CSEEEEECCTTSHHHHHHHTTSCTTC--EEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHT-----------
T ss_pred CCEEEEecCCchHHHHHHHHhCCCCC--EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHh-----------
Confidence 458999999999999999876 43 58899999999888877752 345667787665321
Q ss_pred CCCCCCccceEEecCC
Q psy12304 188 SLPQKHEVDLIVAGPP 203 (620)
Q Consensus 188 ~~p~~~~vD~i~gGpP 203 (620)
+...+.+|+|+...+
T Consensus 131 -~~~~~~fD~V~~d~~ 145 (248)
T 3tfw_A 131 -LGECPAFDLIFIDAD 145 (248)
T ss_dssp -CCSCCCCSEEEECSC
T ss_pred -cCCCCCeEEEEECCc
Confidence 122347999987654
No 135
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=94.05 E-value=0.027 Score=55.79 Aligned_cols=53 Identities=23% Similarity=0.339 Sum_probs=42.9
Q ss_pred CcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcCC--CcccccchH
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQE--CSVIQDDCN 171 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p~--~~~~~~di~ 171 (620)
.-+++|+.||.|.++..+...|. .-+.|+|+|+.+++..+.| +. ..++++|+.
T Consensus 32 ~~~VLDiG~G~G~lt~~L~~~~~-~~v~avEid~~~~~~~~~~-~~~~v~~i~~D~~ 86 (249)
T 3ftd_A 32 GNTVVEVGGGTGNLTKVLLQHPL-KKLYVIELDREMVENLKSI-GDERLEVINEDAS 86 (249)
T ss_dssp TCEEEEEESCHHHHHHHHTTSCC-SEEEEECCCHHHHHHHTTS-CCTTEEEECSCTT
T ss_pred cCEEEEEcCchHHHHHHHHHcCC-CeEEEEECCHHHHHHHHhc-cCCCeEEEEcchh
Confidence 34799999999999999999874 4689999999999999887 42 345566664
No 136
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}
Probab=94.00 E-value=0.3 Score=44.42 Aligned_cols=119 Identities=11% Similarity=0.072 Sum_probs=70.9
Q ss_pred CcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcCCCc-----ccccchHHHHHHhhcccccccCcCCCC
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQECS-----VIQDDCNLVLKSLLKGHTQHKGVSLPQ 191 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p~~~-----~~~~di~~~~~~~~~~~~~~~~~~~p~ 191 (620)
..+++|+.||.|.++..+....-...+.++|+++.+++.-+.|..... .+.+|..+ .++.
T Consensus 26 ~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~---------------~~~~ 90 (178)
T 3hm2_A 26 HETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRIAVQQGAPR---------------AFDD 90 (178)
T ss_dssp TEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSEEEECCTTG---------------GGGG
T ss_pred CCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCEEEecchHh---------------hhhc
Confidence 458999999999999998876211358899999999988887743211 33333311 2222
Q ss_pred C-CccceEEecCCCCccccccccchhhhcccccchHHHHHHHhhhcCCcEEEEccccccccccchhHHHHHHHHHHcCCC
Q psy12304 192 K-HEVDLIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLSFCDLFQPKYIILENVTGLVHFNKNEILQCIFHCLLKMNY 270 (620)
Q Consensus 192 ~-~~vD~i~gGpPCQ~fS~~~~~~~~~~~d~r~~L~~~~~~~i~~~~P~~~v~ENV~gl~~~~~~~~~~~i~~~l~~~GY 270 (620)
. +.+|+|+.+.+... ..++.+ +.+.++|.-.++=+.... .....+...+...|+
T Consensus 91 ~~~~~D~i~~~~~~~~----------------~~~l~~---~~~~L~~gG~l~~~~~~~------~~~~~~~~~~~~~~~ 145 (178)
T 3hm2_A 91 VPDNPDVIFIGGGLTA----------------PGVFAA---AWKRLPVGGRLVANAVTV------ESEQMLWALRKQFGG 145 (178)
T ss_dssp CCSCCSEEEECC-TTC----------------TTHHHH---HHHTCCTTCEEEEEECSH------HHHHHHHHHHHHHCC
T ss_pred cCCCCCEEEECCcccH----------------HHHHHH---HHHhcCCCCEEEEEeecc------ccHHHHHHHHHHcCC
Confidence 2 57999996554321 123333 334567865554222211 234556677777787
Q ss_pred EEEEE
Q psy12304 271 QVTFD 275 (620)
Q Consensus 271 ~v~~~ 275 (620)
.+...
T Consensus 146 ~~~~~ 150 (178)
T 3hm2_A 146 TISSF 150 (178)
T ss_dssp EEEEE
T ss_pred eeEEE
Confidence 76543
No 137
>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45
Probab=93.99 E-value=0.28 Score=52.65 Aligned_cols=76 Identities=18% Similarity=0.173 Sum_probs=52.7
Q ss_pred CcceecccccccHHHHHHHhc--------------CCCccEEEEcCchhHHHHHHHhcC-------CCcccccchHHHHH
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQA--------------GVAKPCWSVELERSEAASYDANFQ-------ECSVIQDDCNLVLK 175 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~a--------------G~~~~~~a~e~d~~a~~ty~~N~p-------~~~~~~~di~~~~~ 175 (620)
..+++|.+||.|++.+.+... .- ..++++|+++.+.+.-+.|.- +..+.++|..
T Consensus 172 ~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~-~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~~i~~gD~l---- 246 (445)
T 2okc_A 172 GETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRD-KALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSL---- 246 (445)
T ss_dssp TCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHH-TTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCTT----
T ss_pred CCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcC-eEEEEEeCCHHHHHHHHHHHHHhCCCcCCCCEeeCCCC----
Confidence 458999999999998877642 11 358999999999888777631 2333444431
Q ss_pred HhhcccccccCcCCCCCCccceEEecCCCCcccc
Q psy12304 176 SLLKGHTQHKGVSLPQKHEVDLIVAGPPCQGFSQ 209 (620)
Q Consensus 176 ~~~~~~~~~~~~~~p~~~~vD~i~gGpPCQ~fS~ 209 (620)
..+..+.+|+|++-||.-+...
T Consensus 247 ------------~~~~~~~fD~Iv~NPPf~~~~~ 268 (445)
T 2okc_A 247 ------------EKEPSTLVDVILANPPFGTRPA 268 (445)
T ss_dssp ------------TSCCSSCEEEEEECCCSSCCCT
T ss_pred ------------CCcccCCcCEEEECCCCCCccc
Confidence 1122347999999999876554
No 138
>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7
Probab=93.94 E-value=0.05 Score=52.41 Aligned_cols=73 Identities=16% Similarity=0.103 Sum_probs=54.4
Q ss_pred CcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcCC---CcccccchHHHHHHhhcccccccCcCCCCCC
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQE---CSVIQDDCNLVLKSLLKGHTQHKGVSLPQKH 193 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p~---~~~~~~di~~~~~~~~~~~~~~~~~~~p~~~ 193 (620)
..++||+.||.|.++.-+...|. .+.++|+++.+++.-+.|... ..+..+|+.+ .++..+
T Consensus 71 ~~~vLdiG~G~G~~~~~l~~~~~--~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~---------------~~~~~~ 133 (231)
T 1vbf_A 71 GQKVLEIGTGIGYYTALIAEIVD--KVVSVEINEKMYNYASKLLSYYNNIKLILGDGTL---------------GYEEEK 133 (231)
T ss_dssp TCEEEEECCTTSHHHHHHHHHSS--EEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGG---------------CCGGGC
T ss_pred CCEEEEEcCCCCHHHHHHHHHcC--EEEEEeCCHHHHHHHHHHHhhcCCeEEEECCccc---------------ccccCC
Confidence 34899999999999999998884 588999999999999888753 3344455432 122235
Q ss_pred ccceEEecCCCCc
Q psy12304 194 EVDLIVAGPPCQG 206 (620)
Q Consensus 194 ~vD~i~gGpPCQ~ 206 (620)
.+|+|+...++..
T Consensus 134 ~fD~v~~~~~~~~ 146 (231)
T 1vbf_A 134 PYDRVVVWATAPT 146 (231)
T ss_dssp CEEEEEESSBBSS
T ss_pred CccEEEECCcHHH
Confidence 7999998876643
No 139
>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4
Probab=93.82 E-value=0.093 Score=48.42 Aligned_cols=70 Identities=19% Similarity=0.245 Sum_probs=51.1
Q ss_pred CcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcC-----C--CcccccchHHHHHHhhcccccccCcCC
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQ-----E--CSVIQDDCNLVLKSLLKGHTQHKGVSL 189 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p-----~--~~~~~~di~~~~~~~~~~~~~~~~~~~ 189 (620)
..++||+.||.|.++..+...|. .+.++|+++.+++..+.|.. + ..++.+|+.+ .+
T Consensus 53 ~~~vLdiG~G~G~~~~~~~~~~~--~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~---------------~~ 115 (194)
T 1dus_A 53 DDDILDLGCGYGVIGIALADEVK--STTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYE---------------NV 115 (194)
T ss_dssp TCEEEEETCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTT---------------TC
T ss_pred CCeEEEeCCCCCHHHHHHHHcCC--eEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhc---------------cc
Confidence 45899999999999999988854 58899999999988887752 1 3334444321 11
Q ss_pred CCCCccceEEecCCC
Q psy12304 190 PQKHEVDLIVAGPPC 204 (620)
Q Consensus 190 p~~~~vD~i~gGpPC 204 (620)
..+.+|+|+..+|-
T Consensus 116 -~~~~~D~v~~~~~~ 129 (194)
T 1dus_A 116 -KDRKYNKIITNPPI 129 (194)
T ss_dssp -TTSCEEEEEECCCS
T ss_pred -ccCCceEEEECCCc
Confidence 23579999987764
No 140
>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}
Probab=93.78 E-value=0.099 Score=54.88 Aligned_cols=69 Identities=25% Similarity=0.241 Sum_probs=49.7
Q ss_pred CCcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcC------CCcccccchHHHHHHhhcccccccCcCC
Q psy12304 116 TPLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQ------ECSVIQDDCNLVLKSLLKGHTQHKGVSL 189 (620)
Q Consensus 116 ~~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p------~~~~~~~di~~~~~~~~~~~~~~~~~~~ 189 (620)
...++||+.||.|.+++-+.++|. .-+.++|++ .+++..+.+.. ...++.+|+.++
T Consensus 63 ~~~~VLDlGcGtG~ls~~la~~g~-~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---------------- 124 (376)
T 3r0q_C 63 EGKTVLDVGTGSGILAIWSAQAGA-RKVYAVEAT-KMADHARALVKANNLDHIVEVIEGSVEDI---------------- 124 (376)
T ss_dssp TTCEEEEESCTTTHHHHHHHHTTC-SEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCGGGC----------------
T ss_pred CCCEEEEeccCcCHHHHHHHhcCC-CEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECchhhc----------------
Confidence 346899999999999999999997 679999999 66555555431 134555665432
Q ss_pred CCCCccceEEecC
Q psy12304 190 PQKHEVDLIVAGP 202 (620)
Q Consensus 190 p~~~~vD~i~gGp 202 (620)
+.++.+|+|+..+
T Consensus 125 ~~~~~~D~Iv~~~ 137 (376)
T 3r0q_C 125 SLPEKVDVIISEW 137 (376)
T ss_dssp CCSSCEEEEEECC
T ss_pred CcCCcceEEEEcC
Confidence 2226899999855
No 141
>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13
Probab=93.76 E-value=0.27 Score=48.66 Aligned_cols=114 Identities=20% Similarity=0.185 Sum_probs=69.7
Q ss_pred CcceecccccccHHHHHHHhc-CCCccEEEEcCchhHHHHHHHhc--------CCCcccccchHHHHHHhhcccccccCc
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQA-GVAKPCWSVELERSEAASYDANF--------QECSVIQDDCNLVLKSLLKGHTQHKGV 187 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~a-G~~~~~~a~e~d~~a~~ty~~N~--------p~~~~~~~di~~~~~~~~~~~~~~~~~ 187 (620)
.-++||+.||.|.++..+... |-...++++|+++.+++..+.|. ++..+..+|+.+.
T Consensus 100 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~-------------- 165 (280)
T 1i9g_A 100 GARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADS-------------- 165 (280)
T ss_dssp TCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGC--------------
T ss_pred CCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhc--------------
Confidence 348999999999999988874 31135899999999988887774 2334455555321
Q ss_pred CCCCCCccceEEecCCCCccccccccchhhhcccccchHHHHHHHhhhcCCcEEEEccccccccccchhHHHHHHHHHHc
Q psy12304 188 SLPQKHEVDLIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLSFCDLFQPKYIILENVTGLVHFNKNEILQCIFHCLLK 267 (620)
Q Consensus 188 ~~p~~~~vD~i~gGpPCQ~fS~~~~~~~~~~~d~r~~L~~~~~~~i~~~~P~~~v~ENV~gl~~~~~~~~~~~i~~~l~~ 267 (620)
.++ .+.+|+|+..+|.. ..++.+ +.+.++|.-.++=.++.. ..+..++..|.+
T Consensus 166 ~~~-~~~~D~v~~~~~~~-----------------~~~l~~---~~~~L~pgG~l~~~~~~~------~~~~~~~~~l~~ 218 (280)
T 1i9g_A 166 ELP-DGSVDRAVLDMLAP-----------------WEVLDA---VSRLLVAGGVLMVYVATV------TQLSRIVEALRA 218 (280)
T ss_dssp CCC-TTCEEEEEEESSCG-----------------GGGHHH---HHHHEEEEEEEEEEESSH------HHHHHHHHHHHH
T ss_pred CCC-CCceeEEEECCcCH-----------------HHHHHH---HHHhCCCCCEEEEEeCCH------HHHHHHHHHHHh
Confidence 111 34799998855411 012323 344567765554444432 234556666666
Q ss_pred -CCCE
Q psy12304 268 -MNYQ 271 (620)
Q Consensus 268 -~GY~ 271 (620)
.||.
T Consensus 219 ~~~f~ 223 (280)
T 1i9g_A 219 KQCWT 223 (280)
T ss_dssp HSSBC
T ss_pred cCCcC
Confidence 6664
No 142
>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*
Probab=93.76 E-value=0.29 Score=46.67 Aligned_cols=76 Identities=14% Similarity=0.051 Sum_probs=54.6
Q ss_pred CcceecccccccHHHHHHHhc---CCCccEEEEcCchhHHHHHHHhcC------CCcccccchHHHHHHhhcccccccCc
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQA---GVAKPCWSVELERSEAASYDANFQ------ECSVIQDDCNLVLKSLLKGHTQHKGV 187 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~a---G~~~~~~a~e~d~~a~~ty~~N~p------~~~~~~~di~~~~~~~~~~~~~~~~~ 187 (620)
..++||+.||.|+.+.-+..+ |. .+.++|+++.+++.-+.|+. ...++.+|+.+.+......
T Consensus 59 ~~~vLdiG~G~G~~~~~la~~~~~~~--~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~------- 129 (223)
T 3duw_A 59 ARNILEIGTLGGYSTIWLARGLSSGG--RVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENE------- 129 (223)
T ss_dssp CSEEEEECCTTSHHHHHHHTTCCSSC--EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHT-------
T ss_pred CCEEEEecCCccHHHHHHHHhCCCCC--EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhc-------
Confidence 458999999999999999886 54 58899999999888777752 2456677886654332110
Q ss_pred CCCCCCccceEEecCCC
Q psy12304 188 SLPQKHEVDLIVAGPPC 204 (620)
Q Consensus 188 ~~p~~~~vD~i~gGpPC 204 (620)
..+.+|+|+...+|
T Consensus 130 ---~~~~fD~v~~d~~~ 143 (223)
T 3duw_A 130 ---KYEPFDFIFIDADK 143 (223)
T ss_dssp ---TCCCCSEEEECSCG
T ss_pred ---CCCCcCEEEEcCCc
Confidence 01368999877663
No 143
>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}
Probab=93.73 E-value=0.071 Score=50.45 Aligned_cols=73 Identities=15% Similarity=0.056 Sum_probs=52.8
Q ss_pred CCcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcC-----CCcccccchHHHHHHhhcccccccCcCCC
Q psy12304 116 TPLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQ-----ECSVIQDDCNLVLKSLLKGHTQHKGVSLP 190 (620)
Q Consensus 116 ~~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p-----~~~~~~~di~~~~~~~~~~~~~~~~~~~p 190 (620)
...++||+.||.|.++.-+...|. .+.++|+++.+++.-+.|+. +..+..+|+.+. .+
T Consensus 77 ~~~~vLdiG~G~G~~~~~la~~~~--~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~---------------~~ 139 (210)
T 3lbf_A 77 PQSRVLEIGTGSGYQTAILAHLVQ--HVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQG---------------WQ 139 (210)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHSS--EEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGC---------------CG
T ss_pred CCCEEEEEcCCCCHHHHHHHHhCC--EEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccC---------------Cc
Confidence 345899999999999999988864 58899999999988877753 334444554321 22
Q ss_pred CCCccceEEecCCCC
Q psy12304 191 QKHEVDLIVAGPPCQ 205 (620)
Q Consensus 191 ~~~~vD~i~gGpPCQ 205 (620)
..+.+|+|+....+.
T Consensus 140 ~~~~~D~i~~~~~~~ 154 (210)
T 3lbf_A 140 ARAPFDAIIVTAAPP 154 (210)
T ss_dssp GGCCEEEEEESSBCS
T ss_pred cCCCccEEEEccchh
Confidence 235799999876553
No 144
>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43
Probab=93.58 E-value=0.11 Score=49.52 Aligned_cols=70 Identities=20% Similarity=0.215 Sum_probs=52.5
Q ss_pred CcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhc----CCCcccccchHHHHHHhhcccccccCcCCCCC
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANF----QECSVIQDDCNLVLKSLLKGHTQHKGVSLPQK 192 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~----p~~~~~~~di~~~~~~~~~~~~~~~~~~~p~~ 192 (620)
..++||+.||.|.++.-+...|. -+.++|+++.+++..+.|. ++..++.+|+.++ .+ ..
T Consensus 39 ~~~vLDlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~--------------~~-~~ 101 (227)
T 1ve3_A 39 RGKVLDLACGVGGFSFLLEDYGF--EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKL--------------SF-ED 101 (227)
T ss_dssp CCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSC--------------CS-CT
T ss_pred CCeEEEEeccCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcCCCceEEECchhcC--------------CC-CC
Confidence 45899999999999999999886 4889999999888877765 4555555565321 11 23
Q ss_pred CccceEEecCC
Q psy12304 193 HEVDLIVAGPP 203 (620)
Q Consensus 193 ~~vD~i~gGpP 203 (620)
+.+|+|+...+
T Consensus 102 ~~~D~v~~~~~ 112 (227)
T 1ve3_A 102 KTFDYVIFIDS 112 (227)
T ss_dssp TCEEEEEEESC
T ss_pred CcEEEEEEcCc
Confidence 57999998766
No 145
>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}
Probab=93.36 E-value=0.16 Score=50.95 Aligned_cols=42 Identities=17% Similarity=0.148 Sum_probs=37.7
Q ss_pred cceecccccccHHHHHHHhcCCCccEEEEcC-chhHHHHHHHhc
Q psy12304 118 LKCLDLFSGCGGLMEGLCQAGVAKPCWSVEL-ERSEAASYDANF 160 (620)
Q Consensus 118 l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~-d~~a~~ty~~N~ 160 (620)
.++|||.||.|.+++.+...|. ..++++|+ ++.+++.-+.|.
T Consensus 81 ~~vLDlG~G~G~~~~~~a~~~~-~~v~~~D~s~~~~~~~a~~n~ 123 (281)
T 3bzb_A 81 KTVCELGAGAGLVSIVAFLAGA-DQVVATDYPDPEILNSLESNI 123 (281)
T ss_dssp CEEEETTCTTSHHHHHHHHTTC-SEEEEEECSCHHHHHHHHHHH
T ss_pred CeEEEecccccHHHHHHHHcCC-CEEEEEeCCCHHHHHHHHHHH
Confidence 4899999999999999999886 56999999 899999888876
No 146
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*
Probab=93.24 E-value=0.085 Score=50.09 Aligned_cols=69 Identities=14% Similarity=0.078 Sum_probs=52.9
Q ss_pred CCcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcCC---CcccccchHHHHHHhhcccccccCcCCCCC
Q psy12304 116 TPLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQE---CSVIQDDCNLVLKSLLKGHTQHKGVSLPQK 192 (620)
Q Consensus 116 ~~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p~---~~~~~~di~~~~~~~~~~~~~~~~~~~p~~ 192 (620)
...++||+-||.|.++..+...|. -+.++|+++.+++.-+.+... ..++.+|+.+ ++..
T Consensus 51 ~~~~vLDiGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~----------------~~~~ 112 (216)
T 3ofk_A 51 AVSNGLEIGCAAGAFTEKLAPHCK--RLTVIDVMPRAIGRACQRTKRWSHISWAATDILQ----------------FSTA 112 (216)
T ss_dssp SEEEEEEECCTTSHHHHHHGGGEE--EEEEEESCHHHHHHHHHHTTTCSSEEEEECCTTT----------------CCCS
T ss_pred CCCcEEEEcCCCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHhcccCCCeEEEEcchhh----------------CCCC
Confidence 456899999999999999998885 488999999999999998754 2344455432 2234
Q ss_pred CccceEEecC
Q psy12304 193 HEVDLIVAGP 202 (620)
Q Consensus 193 ~~vD~i~gGp 202 (620)
+.+|+|+...
T Consensus 113 ~~fD~v~~~~ 122 (216)
T 3ofk_A 113 ELFDLIVVAE 122 (216)
T ss_dssp CCEEEEEEES
T ss_pred CCccEEEEcc
Confidence 6899999863
No 147
>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*
Probab=93.22 E-value=0.082 Score=52.27 Aligned_cols=42 Identities=17% Similarity=0.114 Sum_probs=37.3
Q ss_pred CcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhc
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANF 160 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~ 160 (620)
..++||+-||.|..+.-|.+.|+ + +.++|+++.+++..+.++
T Consensus 69 ~~~vLD~GCG~G~~~~~La~~G~-~-V~gvD~S~~~i~~a~~~~ 110 (252)
T 2gb4_A 69 GLRVFFPLCGKAIEMKWFADRGH-T-VVGVEISEIGIREFFAEQ 110 (252)
T ss_dssp SCEEEETTCTTCTHHHHHHHTTC-E-EEEECSCHHHHHHHHHHT
T ss_pred CCeEEEeCCCCcHHHHHHHHCCC-e-EEEEECCHHHHHHHHHhc
Confidence 45899999999999999999998 4 889999999999887654
No 148
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0
Probab=93.18 E-value=0.26 Score=47.00 Aligned_cols=76 Identities=14% Similarity=0.115 Sum_probs=53.5
Q ss_pred CcceecccccccHHHHHHHhc---CCCccEEEEcCchhHHHHHHHhcC------CCcccccchHHHHHHhhcccccccCc
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQA---GVAKPCWSVELERSEAASYDANFQ------ECSVIQDDCNLVLKSLLKGHTQHKGV 187 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~a---G~~~~~~a~e~d~~a~~ty~~N~p------~~~~~~~di~~~~~~~~~~~~~~~~~ 187 (620)
..++||+.||.|..++-+... +. .+.++|+++.+++.-+.|+. ...++.+|+.+.+......
T Consensus 65 ~~~vLdiG~G~G~~~~~la~~~~~~~--~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~------- 135 (225)
T 3tr6_A 65 AKKVIDIGTFTGYSAIAMGLALPKDG--TLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHA------- 135 (225)
T ss_dssp CSEEEEECCTTSHHHHHHHTTCCTTC--EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTT-------
T ss_pred CCEEEEeCCcchHHHHHHHHhCCCCC--EEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhc-------
Confidence 348999999999999999875 43 58999999999888877752 2456677886654332110
Q ss_pred CCCCCCccceEEecCC
Q psy12304 188 SLPQKHEVDLIVAGPP 203 (620)
Q Consensus 188 ~~p~~~~vD~i~gGpP 203 (620)
...+.+|+|+..++
T Consensus 136 --~~~~~fD~v~~~~~ 149 (225)
T 3tr6_A 136 --GQAWQYDLIYIDAD 149 (225)
T ss_dssp --TCTTCEEEEEECSC
T ss_pred --cCCCCccEEEECCC
Confidence 01147899986554
No 149
>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A
Probab=93.12 E-value=0.23 Score=51.41 Aligned_cols=99 Identities=19% Similarity=0.226 Sum_probs=61.2
Q ss_pred CcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhc------CCCcccccchHHHHHHhhcccccccCcCCC
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANF------QECSVIQDDCNLVLKSLLKGHTQHKGVSLP 190 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~------p~~~~~~~di~~~~~~~~~~~~~~~~~~~p 190 (620)
..++||+.||.|.+++-+..+|. .-+.++|+++.+ +..+.+. +...++.+|+.+ ++
T Consensus 51 ~~~VLDiGcGtG~ls~~la~~g~-~~V~~vD~s~~~-~~a~~~~~~~~l~~~v~~~~~d~~~----------------~~ 112 (348)
T 2y1w_A 51 DKIVLDVGCGSGILSFFAAQAGA-RKIYAVEASTMA-QHAEVLVKSNNLTDRIVVIPGKVEE----------------VS 112 (348)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTC-SEEEEEECSTHH-HHHHHHHHHTTCTTTEEEEESCTTT----------------CC
T ss_pred cCEEEEcCCCccHHHHHHHhCCC-CEEEEECCHHHH-HHHHHHHHHcCCCCcEEEEEcchhh----------------CC
Confidence 35899999999999999999887 569999999733 3333332 223444455432 22
Q ss_pred CCCccceEEecCCCCccccccccchhhhcccccchHHHHHHHhhhcCCcEEEEccc
Q psy12304 191 QKHEVDLIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLSFCDLFQPKYIILENV 246 (620)
Q Consensus 191 ~~~~vD~i~gGpPCQ~fS~~~~~~~~~~~d~r~~L~~~~~~~i~~~~P~~~v~ENV 246 (620)
.++.+|+|+..++...+. + ..+...+..+.+.++|.-.++=++
T Consensus 113 ~~~~~D~Ivs~~~~~~~~--~-----------~~~~~~l~~~~~~LkpgG~li~~~ 155 (348)
T 2y1w_A 113 LPEQVDIIISEPMGYMLF--N-----------ERMLESYLHAKKYLKPSGNMFPTI 155 (348)
T ss_dssp CSSCEEEEEECCCBTTBT--T-----------TSHHHHHHHGGGGEEEEEEEESCE
T ss_pred CCCceeEEEEeCchhcCC--h-----------HHHHHHHHHHHhhcCCCeEEEEec
Confidence 235799999876622111 0 112233344556778887776333
No 150
>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}
Probab=93.02 E-value=0.17 Score=49.28 Aligned_cols=71 Identities=15% Similarity=0.085 Sum_probs=54.8
Q ss_pred CCcceecccccccHHHHHHHhc--CCCccEEEEcCchhHHHHHHHhcCCCcccccchHHHHHHhhcccccccCcCCCCCC
Q psy12304 116 TPLKCLDLFSGCGGLMEGLCQA--GVAKPCWSVELERSEAASYDANFQECSVIQDDCNLVLKSLLKGHTQHKGVSLPQKH 193 (620)
Q Consensus 116 ~~l~~~dLFsG~Gg~s~Gl~~a--G~~~~~~a~e~d~~a~~ty~~N~p~~~~~~~di~~~~~~~~~~~~~~~~~~~p~~~ 193 (620)
...++||+-||.|.++.-+... |. .+.++|+++..++..+.+.++..+..+|+.+ ++..+
T Consensus 33 ~~~~vLdiG~G~G~~~~~l~~~~~~~--~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~----------------~~~~~ 94 (259)
T 2p35_A 33 RVLNGYDLGCGPGNSTELLTDRYGVN--VITGIDSDDDMLEKAADRLPNTNFGKADLAT----------------WKPAQ 94 (259)
T ss_dssp CCSSEEEETCTTTHHHHHHHHHHCTT--SEEEEESCHHHHHHHHHHSTTSEEEECCTTT----------------CCCSS
T ss_pred CCCEEEEecCcCCHHHHHHHHhCCCC--EEEEEECCHHHHHHHHHhCCCcEEEECChhh----------------cCccC
Confidence 3458999999999999988876 54 4889999999999999887777666666532 22345
Q ss_pred ccceEEecCCC
Q psy12304 194 EVDLIVAGPPC 204 (620)
Q Consensus 194 ~vD~i~gGpPC 204 (620)
.+|+|+.....
T Consensus 95 ~fD~v~~~~~l 105 (259)
T 2p35_A 95 KADLLYANAVF 105 (259)
T ss_dssp CEEEEEEESCG
T ss_pred CcCEEEEeCch
Confidence 79999986543
No 151
>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}
Probab=92.95 E-value=0.21 Score=49.62 Aligned_cols=78 Identities=8% Similarity=0.024 Sum_probs=54.3
Q ss_pred CcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcCCCcccccchHHHHHHhhcccccccCcCCCCCCccc
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQECSVIQDDCNLVLKSLLKGHTQHKGVSLPQKHEVD 196 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p~~~~~~~di~~~~~~~~~~~~~~~~~~~p~~~~vD 196 (620)
..++||+.||.|.+++-|...|. + +.++|+++.+++.-+.|.... .+..++.++. . ..... ..+.+|
T Consensus 46 g~~VLDlGcGtG~~a~~La~~g~-~-V~gvD~S~~ml~~Ar~~~~~~-~v~~~~~~~~-------~-~~~~~--~~~~fD 112 (261)
T 3iv6_A 46 GSTVAVIGASTRFLIEKALERGA-S-VTVFDFSQRMCDDLAEALADR-CVTIDLLDIT-------A-EIPKE--LAGHFD 112 (261)
T ss_dssp TCEEEEECTTCHHHHHHHHHTTC-E-EEEEESCHHHHHHHHHHTSSS-CCEEEECCTT-------S-CCCGG--GTTCCS
T ss_pred cCEEEEEeCcchHHHHHHHhcCC-E-EEEEECCHHHHHHHHHHHHhc-cceeeeeecc-------c-ccccc--cCCCcc
Confidence 45899999999999999999887 4 889999999999999998654 3333432210 0 00001 135799
Q ss_pred eEEecCCCCcc
Q psy12304 197 LIVAGPPCQGF 207 (620)
Q Consensus 197 ~i~gGpPCQ~f 207 (620)
+|+.....+.|
T Consensus 113 ~Vv~~~~l~~~ 123 (261)
T 3iv6_A 113 FVLNDRLINRF 123 (261)
T ss_dssp EEEEESCGGGS
T ss_pred EEEEhhhhHhC
Confidence 99986554433
No 152
>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}
Probab=92.93 E-value=0.13 Score=49.79 Aligned_cols=74 Identities=9% Similarity=0.059 Sum_probs=51.4
Q ss_pred CcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcC------CCcccccchHHHHHHhhcccccccCcCCC
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQ------ECSVIQDDCNLVLKSLLKGHTQHKGVSLP 190 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p------~~~~~~~di~~~~~~~~~~~~~~~~~~~p 190 (620)
..++||+.||.|.+++.+..++-...+.++|+++.+++.-+.|+. +..++.+|+.+.+.. .+
T Consensus 72 ~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-----------~~- 139 (232)
T 3ntv_A 72 VKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFEN-----------VN- 139 (232)
T ss_dssp CCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHH-----------HT-
T ss_pred CCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHh-----------hc-
Confidence 358999999999999999884322358899999999888877752 345566666543210 01
Q ss_pred CCCccceEEecCC
Q psy12304 191 QKHEVDLIVAGPP 203 (620)
Q Consensus 191 ~~~~vD~i~gGpP 203 (620)
.+.+|+|+...+
T Consensus 140 -~~~fD~V~~~~~ 151 (232)
T 3ntv_A 140 -DKVYDMIFIDAA 151 (232)
T ss_dssp -TSCEEEEEEETT
T ss_pred -cCCccEEEEcCc
Confidence 247899986543
No 153
>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*
Probab=92.91 E-value=0.16 Score=51.69 Aligned_cols=152 Identities=13% Similarity=0.099 Sum_probs=83.8
Q ss_pred CcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcC---------CCcccccchHHHHHHhhcccccccCc
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQ---------ECSVIQDDCNLVLKSLLKGHTQHKGV 187 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p---------~~~~~~~di~~~~~~~~~~~~~~~~~ 187 (620)
.-++|||.||.|+++.-+...+-...+.++|+|+..++.-+.|++ +..++.+|..+.+..
T Consensus 96 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~----------- 164 (304)
T 2o07_A 96 PRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQ----------- 164 (304)
T ss_dssp CCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHT-----------
T ss_pred CCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhh-----------
Confidence 358999999999999998876322468999999999998888763 345667777665321
Q ss_pred CCCCCCccceEEecCCCCccccccccchhhhcccccchHHHHHHHhhhcCCcEEEEccccccccccchhHHHHHHHHHHc
Q psy12304 188 SLPQKHEVDLIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLSFCDLFQPKYIILENVTGLVHFNKNEILQCIFHCLLK 267 (620)
Q Consensus 188 ~~p~~~~vD~i~gGpPCQ~fS~~~~~~~~~~~d~r~~L~~~~~~~i~~~~P~~~v~ENV~gl~~~~~~~~~~~i~~~l~~ 267 (620)
..+.+|+|+..+|... .... ......++. .+.+.++|.-+++=|..... ......+.+.+.+.+
T Consensus 165 ---~~~~fD~Ii~d~~~~~-~~~~-------~l~~~~~l~---~~~~~LkpgG~lv~~~~~~~--~~~~~~~~~~~~l~~ 228 (304)
T 2o07_A 165 ---NQDAFDVIITDSSDPM-GPAE-------SLFKESYYQ---LMKTALKEDGVLCCQGECQW--LHLDLIKEMRQFCQS 228 (304)
T ss_dssp ---CSSCEEEEEEECC-------------------CHHHH---HHHHHEEEEEEEEEEEECTT--TCHHHHHHHHHHHHH
T ss_pred ---CCCCceEEEECCCCCC-Ccch-------hhhHHHHHH---HHHhccCCCeEEEEecCCcc--cchHHHHHHHHHHHH
Confidence 1247999999776321 1000 000111222 33456789865554432221 122344555555544
Q ss_pred CCCEEEEEEEecCCCCCcccccEEEEEEecC
Q psy12304 268 MNYQVTFDVLQSGNYGVAQSRNRVVILASKP 298 (620)
Q Consensus 268 ~GY~v~~~~l~A~~yGvPQ~R~R~fivg~~~ 298 (620)
.-=.+.+....--.|. .-.--|+++++.
T Consensus 229 ~f~~v~~~~~~vP~~~---~g~~g~~~as~~ 256 (304)
T 2o07_A 229 LFPVVAYAYCTIPTYP---SGQIGFMLCSKN 256 (304)
T ss_dssp HCSEEEEEEEECTTSG---GGEEEEEEEESS
T ss_pred hCCCceeEEEEecccc---CcceEEEEEeCC
Confidence 3223443322222231 124557777754
No 154
>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}
Probab=92.89 E-value=0.13 Score=49.44 Aligned_cols=66 Identities=15% Similarity=0.160 Sum_probs=53.0
Q ss_pred CcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcCCCcccccchHHHHHHhhcccccccCcCCCCCCccc
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQECSVIQDDCNLVLKSLLKGHTQHKGVSLPQKHEVD 196 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p~~~~~~~di~~~~~~~~~~~~~~~~~~~p~~~~vD 196 (620)
..++||+.||.|.++..+...|. .+.++|+++.+++.-+.++++..+..+|+.+ ++..+.+|
T Consensus 41 ~~~vLdiG~G~G~~~~~l~~~~~--~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~----------------~~~~~~~D 102 (239)
T 3bxo_A 41 ASSLLDVACGTGTHLEHFTKEFG--DTAGLELSEDMLTHARKRLPDATLHQGDMRD----------------FRLGRKFS 102 (239)
T ss_dssp CCEEEEETCTTSHHHHHHHHHHS--EEEEEESCHHHHHHHHHHCTTCEEEECCTTT----------------CCCSSCEE
T ss_pred CCeEEEecccCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhCCCCEEEECCHHH----------------cccCCCCc
Confidence 35899999999999999998875 4889999999999999998777666666632 22245799
Q ss_pred eEEe
Q psy12304 197 LIVA 200 (620)
Q Consensus 197 ~i~g 200 (620)
+|+.
T Consensus 103 ~v~~ 106 (239)
T 3bxo_A 103 AVVS 106 (239)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9984
No 155
>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1
Probab=92.79 E-value=0.34 Score=46.29 Aligned_cols=78 Identities=18% Similarity=0.099 Sum_probs=53.8
Q ss_pred CcceecccccccHHHHHHHhcCC-CccEEEEcCchhHHHHHHHhc------CCCcccccchHHHHHHhhcccccccCcCC
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQAGV-AKPCWSVELERSEAASYDANF------QECSVIQDDCNLVLKSLLKGHTQHKGVSL 189 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~aG~-~~~~~a~e~d~~a~~ty~~N~------p~~~~~~~di~~~~~~~~~~~~~~~~~~~ 189 (620)
.-+++|+.||.|.+++-+..+.- ...+.++|+++.+++.-+.|+ ....++.+|+.+.+..+... .
T Consensus 70 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~-----~--- 141 (229)
T 2avd_A 70 AKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAA-----G--- 141 (229)
T ss_dssp CCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHT-----T---
T ss_pred CCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhc-----C---
Confidence 34899999999999999987511 135899999999988877765 23456677876654432110 0
Q ss_pred CCCCccceEEecCC
Q psy12304 190 PQKHEVDLIVAGPP 203 (620)
Q Consensus 190 p~~~~vD~i~gGpP 203 (620)
..+.+|+|+..+|
T Consensus 142 -~~~~~D~v~~d~~ 154 (229)
T 2avd_A 142 -EAGTFDVAVVDAD 154 (229)
T ss_dssp -CTTCEEEEEECSC
T ss_pred -CCCCccEEEECCC
Confidence 0146899998665
No 156
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=92.77 E-value=0.059 Score=54.25 Aligned_cols=55 Identities=18% Similarity=0.236 Sum_probs=44.3
Q ss_pred CcceecccccccHHHHHHHhcCCCcc---EEEEcCchhHHHHHHHhc-CCCcccccchHH
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQAGVAKP---CWSVELERSEAASYDANF-QECSVIQDDCNL 172 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~aG~~~~---~~a~e~d~~a~~ty~~N~-p~~~~~~~di~~ 172 (620)
.-++||+-||.|.++..|...|. .- +.|+|+|+..++..+.|+ ++..++++|+.+
T Consensus 43 ~~~VLEIG~G~G~lt~~La~~~~-~~~~~V~avDid~~~l~~a~~~~~~~v~~i~~D~~~ 101 (279)
T 3uzu_A 43 GERMVEIGPGLGALTGPVIARLA-TPGSPLHAVELDRDLIGRLEQRFGELLELHAGDALT 101 (279)
T ss_dssp TCEEEEECCTTSTTHHHHHHHHC-BTTBCEEEEECCHHHHHHHHHHHGGGEEEEESCGGG
T ss_pred cCEEEEEccccHHHHHHHHHhCC-CcCCeEEEEECCHHHHHHHHHhcCCCcEEEECChhc
Confidence 34799999999999999998765 32 899999999999998883 445566777754
No 157
>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}
Probab=92.64 E-value=0.17 Score=48.75 Aligned_cols=75 Identities=12% Similarity=0.055 Sum_probs=51.6
Q ss_pred cceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcC------CCcccccchHHHHHHhhcccccccCcCCCC
Q psy12304 118 LKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQ------ECSVIQDDCNLVLKSLLKGHTQHKGVSLPQ 191 (620)
Q Consensus 118 l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p------~~~~~~~di~~~~~~~~~~~~~~~~~~~p~ 191 (620)
.++||+.||.|.++.-+....-...+.++|+++.+++.-+.|+. ...+..+|+.+.+.. .+.
T Consensus 56 ~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~------------~~~ 123 (233)
T 2gpy_A 56 ARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEK------------LEL 123 (233)
T ss_dssp SEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHH------------HTT
T ss_pred CEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHh------------ccc
Confidence 48999999999999988876211258899999999888887752 244555665442211 101
Q ss_pred CCccceEEecCCC
Q psy12304 192 KHEVDLIVAGPPC 204 (620)
Q Consensus 192 ~~~vD~i~gGpPC 204 (620)
.+.+|+|+...+|
T Consensus 124 ~~~fD~I~~~~~~ 136 (233)
T 2gpy_A 124 YPLFDVLFIDAAK 136 (233)
T ss_dssp SCCEEEEEEEGGG
T ss_pred CCCccEEEECCCH
Confidence 2478999987765
No 158
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*
Probab=92.61 E-value=0.18 Score=49.65 Aligned_cols=75 Identities=17% Similarity=0.155 Sum_probs=54.3
Q ss_pred CCcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhc------CCCcccccchHHHHHHhhcccccccCcCC
Q psy12304 116 TPLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANF------QECSVIQDDCNLVLKSLLKGHTQHKGVSL 189 (620)
Q Consensus 116 ~~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~------p~~~~~~~di~~~~~~~~~~~~~~~~~~~ 189 (620)
...++||+-||.|.++.-+...+. ..+.++|+++.+++..+.+. ++..++.+|+.+ +
T Consensus 46 ~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~----------------~ 108 (267)
T 3kkz_A 46 EKSLIADIGCGTGGQTMVLAGHVT-GQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDD----------------L 108 (267)
T ss_dssp TTCEEEEETCTTCHHHHHHHTTCS-SEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTS----------------C
T ss_pred CCCEEEEeCCCCCHHHHHHHhccC-CEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhh----------------C
Confidence 346899999999999999998865 46899999999988887775 224444555422 2
Q ss_pred C-CCCccceEEecCCCCcc
Q psy12304 190 P-QKHEVDLIVAGPPCQGF 207 (620)
Q Consensus 190 p-~~~~vD~i~gGpPCQ~f 207 (620)
| ..+.+|+|+.......+
T Consensus 109 ~~~~~~fD~i~~~~~~~~~ 127 (267)
T 3kkz_A 109 PFRNEELDLIWSEGAIYNI 127 (267)
T ss_dssp CCCTTCEEEEEESSCGGGT
T ss_pred CCCCCCEEEEEEcCCceec
Confidence 2 23579999987665433
No 159
>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13
Probab=92.60 E-value=0.19 Score=51.51 Aligned_cols=44 Identities=25% Similarity=0.268 Sum_probs=36.6
Q ss_pred CcceecccccccHHHHHHHhc-CCCccEEEEcCchhHHHHHHHhc
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQA-GVAKPCWSVELERSEAASYDANF 160 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~a-G~~~~~~a~e~d~~a~~ty~~N~ 160 (620)
..++||+.||.|.++..+... |-...++++|+++.+++..+.|.
T Consensus 106 g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~ 150 (336)
T 2b25_A 106 GDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNY 150 (336)
T ss_dssp TCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHH
T ss_pred CCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHH
Confidence 348999999999999998886 53235899999999998888775
No 160
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}
Probab=92.55 E-value=0.25 Score=48.96 Aligned_cols=69 Identities=17% Similarity=0.181 Sum_probs=54.8
Q ss_pred CcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcCCCcccccchHHHHHHhhcccccccCcCCCCCCccc
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQECSVIQDDCNLVLKSLLKGHTQHKGVSLPQKHEVD 196 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p~~~~~~~di~~~~~~~~~~~~~~~~~~~p~~~~vD 196 (620)
..++||+-||.|.++.-+...|. .+.++|+++.+++..+.+.++..+..+|+.+ +|..+.+|
T Consensus 58 ~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~----------------~~~~~~fD 119 (279)
T 3ccf_A 58 GEFILDLGCGTGQLTEKIAQSGA--EVLGTDNAATMIEKARQNYPHLHFDVADARN----------------FRVDKPLD 119 (279)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHCTTSCEEECCTTT----------------CCCSSCEE
T ss_pred CCEEEEecCCCCHHHHHHHhCCC--eEEEEECCHHHHHHHHhhCCCCEEEECChhh----------------CCcCCCcC
Confidence 35899999999999999988775 4889999999999999888777766666632 23346799
Q ss_pred eEEecCC
Q psy12304 197 LIVAGPP 203 (620)
Q Consensus 197 ~i~gGpP 203 (620)
+|+....
T Consensus 120 ~v~~~~~ 126 (279)
T 3ccf_A 120 AVFSNAM 126 (279)
T ss_dssp EEEEESC
T ss_pred EEEEcch
Confidence 9997653
No 161
>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*
Probab=92.50 E-value=0.13 Score=49.15 Aligned_cols=74 Identities=18% Similarity=0.236 Sum_probs=51.1
Q ss_pred CcceecccccccHHHHHHHhc-CCCccEEEEcCchhHHHHHHHhcC----------CCcccccchHHHHHHhhccccccc
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQA-GVAKPCWSVELERSEAASYDANFQ----------ECSVIQDDCNLVLKSLLKGHTQHK 185 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~a-G~~~~~~a~e~d~~a~~ty~~N~p----------~~~~~~~di~~~~~~~~~~~~~~~ 185 (620)
..++||+.||.|+++.-+... |-...+.++|+++.+++.-+.|.. +..+..+|+..
T Consensus 78 ~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~------------- 144 (226)
T 1i1n_A 78 GAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRM------------- 144 (226)
T ss_dssp TCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGG-------------
T ss_pred CCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCccc-------------
Confidence 458999999999999888765 431258899999999888776642 23333444321
Q ss_pred CcCCCCCCccceEEecCCCC
Q psy12304 186 GVSLPQKHEVDLIVAGPPCQ 205 (620)
Q Consensus 186 ~~~~p~~~~vD~i~gGpPCQ 205 (620)
..+..+.+|+|+...+|.
T Consensus 145 --~~~~~~~fD~i~~~~~~~ 162 (226)
T 1i1n_A 145 --GYAEEAPYDAIHVGAAAP 162 (226)
T ss_dssp --CCGGGCCEEEEEECSBBS
T ss_pred --CcccCCCcCEEEECCchH
Confidence 111235799999998883
No 162
>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*
Probab=92.45 E-value=0.084 Score=52.69 Aligned_cols=71 Identities=18% Similarity=0.161 Sum_probs=51.4
Q ss_pred CcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcCCC------cccccchHHHHHHhhcccccccCcCCC
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQEC------SVIQDDCNLVLKSLLKGHTQHKGVSLP 190 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p~~------~~~~~di~~~~~~~~~~~~~~~~~~~p 190 (620)
..++||+.||.|.++..+...|. ..+.++|+++.+++.-+.+.+.. .++.+|+.++ .++
T Consensus 65 ~~~vLDiGcG~G~~~~~l~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--------------~~~ 129 (298)
T 1ri5_A 65 GDSVLDLGCGKGGDLLKYERAGI-GEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGR--------------HMD 129 (298)
T ss_dssp TCEEEEETCTTTTTHHHHHHHTC-SEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTS--------------CCC
T ss_pred CCeEEEECCCCCHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCcccc--------------ccC
Confidence 45899999999999988888886 56899999999999888876432 3334444221 121
Q ss_pred CCCccceEEecC
Q psy12304 191 QKHEVDLIVAGP 202 (620)
Q Consensus 191 ~~~~vD~i~gGp 202 (620)
..+.+|+|+...
T Consensus 130 ~~~~fD~v~~~~ 141 (298)
T 1ri5_A 130 LGKEFDVISSQF 141 (298)
T ss_dssp CSSCEEEEEEES
T ss_pred CCCCcCEEEECc
Confidence 245799998764
No 163
>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*
Probab=92.42 E-value=0.82 Score=44.47 Aligned_cols=148 Identities=11% Similarity=0.078 Sum_probs=83.2
Q ss_pred CCcceecccccccHHHHHHHhc-CCCccEEEEcCchhHHHHH---HHhcCCCcccccchHHHHHHhhcccccccCcCCCC
Q psy12304 116 TPLKCLDLFSGCGGLMEGLCQA-GVAKPCWSVELERSEAASY---DANFQECSVIQDDCNLVLKSLLKGHTQHKGVSLPQ 191 (620)
Q Consensus 116 ~~l~~~dLFsG~Gg~s~Gl~~a-G~~~~~~a~e~d~~a~~ty---~~N~p~~~~~~~di~~~~~~~~~~~~~~~~~~~p~ 191 (620)
...++|||.||.|+++.-+.+. |-.-.++|+|+++...+.+ ....++...+.+|+.... ....+
T Consensus 76 ~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r~nv~~i~~Da~~~~----------~~~~~-- 143 (232)
T 3id6_C 76 KGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQ----------SYKSV-- 143 (232)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHCTTEEEEECCTTCGG----------GTTTT--
T ss_pred CCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCeEEEEcccccch----------hhhcc--
Confidence 3468999999999998777652 3212589999999775333 122345555566654210 00111
Q ss_pred CCccceEEecCCCCccccccccchhhhcccccchHHHHHHHhh-hcCCcEEEEccccc-cc--cccchhHHHHHHHHHHc
Q psy12304 192 KHEVDLIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLSFCD-LFQPKYIILENVTG-LV--HFNKNEILQCIFHCLLK 267 (620)
Q Consensus 192 ~~~vD~i~gGpPCQ~fS~~~~~~~~~~~d~r~~L~~~~~~~i~-~~~P~~~v~ENV~g-l~--~~~~~~~~~~i~~~l~~ 267 (620)
.+.+|+|+...+- .+ ....+.+.+. .++|.-.++=-+.. .. +....+.++..+..|.+
T Consensus 144 ~~~~D~I~~d~a~--------------~~----~~~il~~~~~~~LkpGG~lvisik~~~~d~t~~~~e~~~~~~~~L~~ 205 (232)
T 3id6_C 144 VENVDVLYVDIAQ--------------PD----QTDIAIYNAKFFLKVNGDMLLVIKARSIDVTKDPKEIYKTEVEKLEN 205 (232)
T ss_dssp CCCEEEEEECCCC--------------TT----HHHHHHHHHHHHEEEEEEEEEEEC-------CCSSSSTTHHHHHHHH
T ss_pred ccceEEEEecCCC--------------hh----HHHHHHHHHHHhCCCCeEEEEEEccCCcccCCCHHHHHHHHHHHHHH
Confidence 2479999876441 00 0111122333 57775433311211 00 11223456778888989
Q ss_pred CCCEEEEEEEecCCCCCcccccEEEEEEecC
Q psy12304 268 MNYQVTFDVLQSGNYGVAQSRNRVVILASKP 298 (620)
Q Consensus 268 ~GY~v~~~~l~A~~yGvPQ~R~R~fivg~~~ 298 (620)
.||.+...+ +- -|..|.-++++|.++
T Consensus 206 ~gf~~~~~~-~l----~p~~~~h~~v~~~~~ 231 (232)
T 3id6_C 206 SNFETIQII-NL----DPYDKDHAIVLSKYK 231 (232)
T ss_dssp TTEEEEEEE-EC----TTTCSSCEEEEEEEC
T ss_pred CCCEEEEEe-cc----CCCcCceEEEEEEeC
Confidence 998876544 22 367788888888754
No 164
>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*
Probab=92.26 E-value=0.23 Score=50.66 Aligned_cols=150 Identities=12% Similarity=0.091 Sum_probs=91.0
Q ss_pred cceecccccccHHHHHHHhc-CCCccEEEEcCchhHHHHHHHhcC----------CCcccccchHHHHHHhhcccccccC
Q psy12304 118 LKCLDLFSGCGGLMEGLCQA-GVAKPCWSVELERSEAASYDANFQ----------ECSVIQDDCNLVLKSLLKGHTQHKG 186 (620)
Q Consensus 118 l~~~dLFsG~Gg~s~Gl~~a-G~~~~~~a~e~d~~a~~ty~~N~p----------~~~~~~~di~~~~~~~~~~~~~~~~ 186 (620)
.++||+-||.|++..-+... +. .-+.++|+|+.+++.-+.|++ ...++.+|+.+.+..
T Consensus 79 ~~VLdiG~G~G~~~~~l~~~~~~-~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~---------- 147 (314)
T 1uir_A 79 KRVLIVGGGEGATLREVLKHPTV-EKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLER---------- 147 (314)
T ss_dssp CEEEEEECTTSHHHHHHTTSTTC-CEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHH----------
T ss_pred CeEEEEcCCcCHHHHHHHhcCCC-CEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHh----------
Confidence 58999999999999988775 33 468899999999988877753 345667787765321
Q ss_pred cCCCCCCccceEEecCCCCccccccccchhhhcccccch-HHHHHH-HhhhcCCcEEEEccccccccccchhHHHHHHHH
Q psy12304 187 VSLPQKHEVDLIVAGPPCQGFSQLNRARELEKSKLKNGL-VFTFLS-FCDLFQPKYIILENVTGLVHFNKNEILQCIFHC 264 (620)
Q Consensus 187 ~~~p~~~~vD~i~gGpPCQ~fS~~~~~~~~~~~d~r~~L-~~~~~~-~i~~~~P~~~v~ENV~gl~~~~~~~~~~~i~~~ 264 (620)
..+.+|+|+..++... +..+ ....| ..++++ +.+.++|.-+++=|....... ....++.+.+.
T Consensus 148 ----~~~~fD~Ii~d~~~~~-~~~~---------~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~-~~~~~~~~~~~ 212 (314)
T 1uir_A 148 ----TEERYDVVIIDLTDPV-GEDN---------PARLLYTVEFYRLVKAHLNPGGVMGMQTGMILLT-HHRVHPVVHRT 212 (314)
T ss_dssp ----CCCCEEEEEEECCCCB-STTC---------GGGGGSSHHHHHHHHHTEEEEEEEEEEEEEECC----CHHHHHHHH
T ss_pred ----cCCCccEEEECCCCcc-cccC---------cchhccHHHHHHHHHHhcCCCcEEEEEccCcccc-CHHHHHHHHHH
Confidence 1246899999876422 1001 01112 233333 345678987666564332101 22457778888
Q ss_pred HHcCCCEEEEEEEecCCCCCccc-ccEEEEEEecC
Q psy12304 265 LLKMNYQVTFDVLQSGNYGVAQS-RNRVVILASKP 298 (620)
Q Consensus 265 l~~~GY~v~~~~l~A~~yGvPQ~-R~R~fivg~~~ 298 (620)
|.+..=.+...... +|.. -...|++|++.
T Consensus 213 l~~~F~~v~~~~~~-----vP~~~g~~~~~~as~~ 242 (314)
T 1uir_A 213 VREAFRYVRSYKNH-----IPGFFLNFGFLLASDA 242 (314)
T ss_dssp HHTTCSEEEEEEEE-----EGGGTEEEEEEEEESS
T ss_pred HHHHCCceEEEEEe-----cCCCCCeEEEEEEECC
Confidence 88775445433222 2322 34677888764
No 165
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43
Probab=92.25 E-value=0.18 Score=49.01 Aligned_cols=66 Identities=20% Similarity=0.214 Sum_probs=49.3
Q ss_pred CcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcC----CCcccccchHHHHHHhhcccccccCcCCCCC
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQ----ECSVIQDDCNLVLKSLLKGHTQHKGVSLPQK 192 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p----~~~~~~~di~~~~~~~~~~~~~~~~~~~p~~ 192 (620)
..++||+.||.|.++..+...|. + +.++|+++.+++.-+.|.. +..++.+|+.+ ++..
T Consensus 42 ~~~vLDlGcG~G~~~~~l~~~~~-~-v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~----------------~~~~ 103 (252)
T 1wzn_A 42 VRRVLDLACGTGIPTLELAERGY-E-VVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLE----------------IAFK 103 (252)
T ss_dssp CCEEEEETCTTCHHHHHHHHTTC-E-EEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGG----------------CCCC
T ss_pred CCEEEEeCCCCCHHHHHHHHCCC-e-EEEEECCHHHHHHHHHHHHhcCCceEEEECChhh----------------cccC
Confidence 35899999999999999999987 4 8899999999888777643 23444555532 2223
Q ss_pred CccceEEe
Q psy12304 193 HEVDLIVA 200 (620)
Q Consensus 193 ~~vD~i~g 200 (620)
+.+|+|+.
T Consensus 104 ~~fD~v~~ 111 (252)
T 1wzn_A 104 NEFDAVTM 111 (252)
T ss_dssp SCEEEEEE
T ss_pred CCccEEEE
Confidence 57999985
No 166
>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*
Probab=92.17 E-value=0.18 Score=46.78 Aligned_cols=69 Identities=22% Similarity=0.102 Sum_probs=50.6
Q ss_pred CcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcC-----CCcccccchHHHHHHhhcccccccCcCCCC
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQ-----ECSVIQDDCNLVLKSLLKGHTQHKGVSLPQ 191 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p-----~~~~~~~di~~~~~~~~~~~~~~~~~~~p~ 191 (620)
..++||+.||.|.++.-+...|. .+.++|+++.+++..+.+.. +..+...|+.+ ++.
T Consensus 33 ~~~vLdiG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~----------------~~~ 94 (199)
T 2xvm_A 33 PGKTLDLGCGNGRNSLYLAANGY--DVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNN----------------LTF 94 (199)
T ss_dssp SCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGG----------------CCC
T ss_pred CCeEEEEcCCCCHHHHHHHHCCC--eEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhh----------------CCC
Confidence 34899999999999999998886 48899999999888776642 33444455432 122
Q ss_pred CCccceEEecCC
Q psy12304 192 KHEVDLIVAGPP 203 (620)
Q Consensus 192 ~~~vD~i~gGpP 203 (620)
.+.+|+|+....
T Consensus 95 ~~~~D~v~~~~~ 106 (199)
T 2xvm_A 95 DRQYDFILSTVV 106 (199)
T ss_dssp CCCEEEEEEESC
T ss_pred CCCceEEEEcch
Confidence 457999987654
No 167
>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*
Probab=92.16 E-value=0.2 Score=51.67 Aligned_cols=69 Identities=23% Similarity=0.203 Sum_probs=48.3
Q ss_pred CcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhc------CCCcccccchHHHHHHhhcccccccCcCCC
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANF------QECSVIQDDCNLVLKSLLKGHTQHKGVSLP 190 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~------p~~~~~~~di~~~~~~~~~~~~~~~~~~~p 190 (620)
.-++||+-||.|.+++-+.++|. .-+.++|+++ +++.-+.|. ++..++.+|+.++ .+|
T Consensus 65 ~~~VLDiGcGtG~ls~~la~~g~-~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~--------------~~~ 128 (340)
T 2fyt_A 65 DKVVLDVGCGTGILSMFAAKAGA-KKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGKIEEV--------------HLP 128 (340)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTC-SEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTS--------------CCS
T ss_pred CCEEEEeeccCcHHHHHHHHcCC-CEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEeeHHHh--------------cCC
Confidence 34899999999999999999986 5799999996 666555553 2344455554321 122
Q ss_pred CCCccceEEecC
Q psy12304 191 QKHEVDLIVAGP 202 (620)
Q Consensus 191 ~~~~vD~i~gGp 202 (620)
.+.+|+|+..+
T Consensus 129 -~~~~D~Ivs~~ 139 (340)
T 2fyt_A 129 -VEKVDVIISEW 139 (340)
T ss_dssp -CSCEEEEEECC
T ss_pred -CCcEEEEEEcC
Confidence 25799999764
No 168
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}
Probab=92.10 E-value=0.25 Score=47.70 Aligned_cols=67 Identities=22% Similarity=0.330 Sum_probs=52.4
Q ss_pred CcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcCCCcccccchHHHHHHhhcccccccCcCCCCCCccc
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQECSVIQDDCNLVLKSLLKGHTQHKGVSLPQKHEVD 196 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p~~~~~~~di~~~~~~~~~~~~~~~~~~~p~~~~vD 196 (620)
..++||+-||.|.++.-+...|. + +.++|+++.+++.-+.+ ..++..|+.+.+. .++ .+.+|
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~~~-~-v~gvD~s~~~~~~a~~~---~~~~~~d~~~~~~------------~~~-~~~fD 103 (240)
T 3dli_A 42 CRRVLDIGCGRGEFLELCKEEGI-E-SIGVDINEDMIKFCEGK---FNVVKSDAIEYLK------------SLP-DKYLD 103 (240)
T ss_dssp CSCEEEETCTTTHHHHHHHHHTC-C-EEEECSCHHHHHHHHTT---SEEECSCHHHHHH------------TSC-TTCBS
T ss_pred CCeEEEEeCCCCHHHHHHHhCCC-c-EEEEECCHHHHHHHHhh---cceeeccHHHHhh------------hcC-CCCee
Confidence 35899999999999999998887 5 78999999999988877 5566778766532 122 35799
Q ss_pred eEEec
Q psy12304 197 LIVAG 201 (620)
Q Consensus 197 ~i~gG 201 (620)
+|+..
T Consensus 104 ~i~~~ 108 (240)
T 3dli_A 104 GVMIS 108 (240)
T ss_dssp EEEEE
T ss_pred EEEEC
Confidence 99974
No 169
>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}
Probab=92.08 E-value=0.14 Score=49.94 Aligned_cols=43 Identities=23% Similarity=0.010 Sum_probs=38.2
Q ss_pred cceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhc
Q psy12304 118 LKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANF 160 (620)
Q Consensus 118 l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~ 160 (620)
-+++|+.||.|-+++.+...|-...++|+|+++.|++.-+.|.
T Consensus 23 ~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~ 65 (230)
T 3lec_A 23 ARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNV 65 (230)
T ss_dssp EEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHH
T ss_pred CEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH
Confidence 5799999999999999999885346899999999999988885
No 170
>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*
Probab=92.06 E-value=0.19 Score=55.76 Aligned_cols=70 Identities=20% Similarity=0.262 Sum_probs=52.7
Q ss_pred CCcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcC-----CCcccccchHHHHHHhhcccccccCcCCC
Q psy12304 116 TPLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQ-----ECSVIQDDCNLVLKSLLKGHTQHKGVSLP 190 (620)
Q Consensus 116 ~~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p-----~~~~~~~di~~~~~~~~~~~~~~~~~~~p 190 (620)
++++|||+=||.|-++..|...|. + |.++|.++.+++.-+.+.. +....++|+.++... .
T Consensus 66 ~~~~vLDvGCG~G~~~~~la~~ga-~-V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~------------~- 130 (569)
T 4azs_A 66 RPLNVLDLGCAQGFFSLSLASKGA-T-IVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAA------------L- 130 (569)
T ss_dssp SCCEEEEETCTTSHHHHHHHHTTC-E-EEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHH------------C-
T ss_pred CCCeEEEECCCCcHHHHHHHhCCC-E-EEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhh------------c-
Confidence 568999999999999999999998 4 8899999999887665432 233456677766421 1
Q ss_pred CCCccceEEe
Q psy12304 191 QKHEVDLIVA 200 (620)
Q Consensus 191 ~~~~vD~i~g 200 (620)
..+.+|+|++
T Consensus 131 ~~~~fD~v~~ 140 (569)
T 4azs_A 131 EEGEFDLAIG 140 (569)
T ss_dssp CTTSCSEEEE
T ss_pred cCCCccEEEE
Confidence 2357999986
No 171
>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}
Probab=92.05 E-value=0.61 Score=47.61 Aligned_cols=122 Identities=14% Similarity=0.139 Sum_probs=79.8
Q ss_pred CCcceecccccccHHHHHHHh--cCCCccEEEEcCchhHHHHHHHhcCC-----CcccccchHHHHHHhhcccccccCcC
Q psy12304 116 TPLKCLDLFSGCGGLMEGLCQ--AGVAKPCWSVELERSEAASYDANFQE-----CSVIQDDCNLVLKSLLKGHTQHKGVS 188 (620)
Q Consensus 116 ~~l~~~dLFsG~Gg~s~Gl~~--aG~~~~~~a~e~d~~a~~ty~~N~p~-----~~~~~~di~~~~~~~~~~~~~~~~~~ 188 (620)
+++++|+|-||.|++..-+.. .+. + +.++|+|+..++.-+.+++. ..++.+|..+++..
T Consensus 89 ~~~rVLdIG~G~G~la~~la~~~p~~-~-v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~------------ 154 (317)
T 3gjy_A 89 SKLRITHLGGGACTMARYFADVYPQS-R-NTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAES------------ 154 (317)
T ss_dssp GGCEEEEESCGGGHHHHHHHHHSTTC-E-EEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHT------------
T ss_pred CCCEEEEEECCcCHHHHHHHHHCCCc-E-EEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhh------------
Confidence 357899999999999998887 355 4 68999999999999998853 45667888766431
Q ss_pred CCCCCccceEEecCCCCccccccccchhhhcccccch-HHHHHH-HhhhcCCcEEEEccccccccccchhHHHHHHHHHH
Q psy12304 189 LPQKHEVDLIVAGPPCQGFSQLNRARELEKSKLKNGL-VFTFLS-FCDLFQPKYIILENVTGLVHFNKNEILQCIFHCLL 266 (620)
Q Consensus 189 ~p~~~~vD~i~gGpPCQ~fS~~~~~~~~~~~d~r~~L-~~~~~~-~i~~~~P~~~v~ENV~gl~~~~~~~~~~~i~~~l~ 266 (620)
. ..+.+|+|+...+.... .. ..| ..+|++ +-+.++|.-+++=|+..-. ....++.++..|.
T Consensus 155 ~-~~~~fDvIi~D~~~~~~-~~------------~~L~t~efl~~~~r~LkpgGvlv~~~~~~~---~~~~~~~~~~tL~ 217 (317)
T 3gjy_A 155 F-TPASRDVIIRDVFAGAI-TP------------QNFTTVEFFEHCHRGLAPGGLYVANCGDHS---DLRGAKSELAGMM 217 (317)
T ss_dssp C-CTTCEEEEEECCSTTSC-CC------------GGGSBHHHHHHHHHHEEEEEEEEEEEEECT---TCHHHHHHHHHHH
T ss_pred c-cCCCCCEEEECCCCccc-cc------------hhhhHHHHHHHHHHhcCCCcEEEEEecCCc---chHHHHHHHHHHH
Confidence 1 12479999986543211 00 011 123444 3356899998887875432 2234556666665
Q ss_pred cC
Q psy12304 267 KM 268 (620)
Q Consensus 267 ~~ 268 (620)
+.
T Consensus 218 ~v 219 (317)
T 3gjy_A 218 EV 219 (317)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 172
>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}
Probab=92.02 E-value=0.23 Score=47.83 Aligned_cols=71 Identities=18% Similarity=0.177 Sum_probs=52.8
Q ss_pred CcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcCC--CcccccchHHHHHHhhcccccccCcCCCCCCc
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQE--CSVIQDDCNLVLKSLLKGHTQHKGVSLPQKHE 194 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p~--~~~~~~di~~~~~~~~~~~~~~~~~~~p~~~~ 194 (620)
..++||+.||.|.++.-+...|. ..+.++|+++.+++.-+.+... ..+..+|+.++ .+ ..+.
T Consensus 44 ~~~vLdiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~--------------~~-~~~~ 107 (243)
T 3bkw_A 44 GLRIVDLGCGFGWFCRWAHEHGA-SYVLGLDLSEKMLARARAAGPDTGITYERADLDKL--------------HL-PQDS 107 (243)
T ss_dssp TCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHTSCSSSEEEEECCGGGC--------------CC-CTTC
T ss_pred CCEEEEEcCcCCHHHHHHHHCCC-CeEEEEcCCHHHHHHHHHhcccCCceEEEcChhhc--------------cC-CCCC
Confidence 45899999999999999999886 4689999999999999888754 23344454321 11 2357
Q ss_pred cceEEecCC
Q psy12304 195 VDLIVAGPP 203 (620)
Q Consensus 195 vD~i~gGpP 203 (620)
+|+|+....
T Consensus 108 fD~v~~~~~ 116 (243)
T 3bkw_A 108 FDLAYSSLA 116 (243)
T ss_dssp EEEEEEESC
T ss_pred ceEEEEecc
Confidence 899997543
No 173
>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A
Probab=91.96 E-value=0.22 Score=47.89 Aligned_cols=67 Identities=16% Similarity=0.032 Sum_probs=52.1
Q ss_pred cceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcC-CCcccccchHHHHHHhhcccccccCcCCCCCCccc
Q psy12304 118 LKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQ-ECSVIQDDCNLVLKSLLKGHTQHKGVSLPQKHEVD 196 (620)
Q Consensus 118 l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p-~~~~~~~di~~~~~~~~~~~~~~~~~~~p~~~~vD 196 (620)
.++||+-||.|.++.-+...|. + +.++|+++.+++.-+.+.+ +..++.+|+.++ +..+.+|
T Consensus 44 ~~vLDiGcG~G~~~~~l~~~~~-~-v~gvD~s~~~~~~a~~~~~~~v~~~~~d~~~~----------------~~~~~fD 105 (250)
T 2p7i_A 44 GNLLELGSFKGDFTSRLQEHFN-D-ITCVEASEEAISHAQGRLKDGITYIHSRFEDA----------------QLPRRYD 105 (250)
T ss_dssp SCEEEESCTTSHHHHHHTTTCS-C-EEEEESCHHHHHHHHHHSCSCEEEEESCGGGC----------------CCSSCEE
T ss_pred CcEEEECCCCCHHHHHHHHhCC-c-EEEEeCCHHHHHHHHHhhhCCeEEEEccHHHc----------------CcCCccc
Confidence 4799999999999999998886 4 8899999999999998886 444555565321 2345799
Q ss_pred eEEecC
Q psy12304 197 LIVAGP 202 (620)
Q Consensus 197 ~i~gGp 202 (620)
+|+...
T Consensus 106 ~v~~~~ 111 (250)
T 2p7i_A 106 NIVLTH 111 (250)
T ss_dssp EEEEES
T ss_pred EEEEhh
Confidence 998753
No 174
>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}
Probab=91.88 E-value=0.19 Score=47.40 Aligned_cols=69 Identities=13% Similarity=0.053 Sum_probs=51.4
Q ss_pred CCcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcCCCcccccchHHHHHHhhcccccccCcCCCCCCcc
Q psy12304 116 TPLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQECSVIQDDCNLVLKSLLKGHTQHKGVSLPQKHEV 195 (620)
Q Consensus 116 ~~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p~~~~~~~di~~~~~~~~~~~~~~~~~~~p~~~~v 195 (620)
...++||+.||.|.++.-+ |+ ..+.++|+++.+++..+.+.++..+..+|+.++ .+ ..+.+
T Consensus 36 ~~~~vLdiG~G~G~~~~~l---~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~--------------~~-~~~~f 96 (211)
T 2gs9_A 36 PGESLLEVGAGTGYWLRRL---PY-PQKVGVEPSEAMLAVGRRRAPEATWVRAWGEAL--------------PF-PGESF 96 (211)
T ss_dssp CCSEEEEETCTTCHHHHHC---CC-SEEEEECCCHHHHHHHHHHCTTSEEECCCTTSC--------------CS-CSSCE
T ss_pred CCCeEEEECCCCCHhHHhC---CC-CeEEEEeCCHHHHHHHHHhCCCcEEEEcccccC--------------CC-CCCcE
Confidence 3458999999999998877 65 468999999999999999886666666665321 11 23479
Q ss_pred ceEEecCC
Q psy12304 196 DLIVAGPP 203 (620)
Q Consensus 196 D~i~gGpP 203 (620)
|+|+....
T Consensus 97 D~v~~~~~ 104 (211)
T 2gs9_A 97 DVVLLFTT 104 (211)
T ss_dssp EEEEEESC
T ss_pred EEEEEcCh
Confidence 99987543
No 175
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...
Probab=91.83 E-value=0.2 Score=47.99 Aligned_cols=104 Identities=15% Similarity=0.227 Sum_probs=65.7
Q ss_pred CcceecccccccHHHHHHHhc---CCCccEEEEcCchhHHHHHHHhcC------CCcccccchHHHHHHhhcccccccCc
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQA---GVAKPCWSVELERSEAASYDANFQ------ECSVIQDDCNLVLKSLLKGHTQHKGV 187 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~a---G~~~~~~a~e~d~~a~~ty~~N~p------~~~~~~~di~~~~~~~~~~~~~~~~~ 187 (620)
.-++||+.||.|..++-+..+ |. .+.++|+++.+++.-+.|.. ...++.+|+.+.+.... .
T Consensus 59 ~~~vLdiG~G~G~~~~~la~~~~~~~--~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~--------~ 128 (221)
T 3u81_A 59 PSLVLELGAYCGYSAVRMARLLQPGA--RLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLK--------K 128 (221)
T ss_dssp CSEEEEECCTTSHHHHHHHTTSCTTC--EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTT--------T
T ss_pred CCEEEEECCCCCHHHHHHHHhCCCCC--EEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHH--------H
Confidence 357999999999999999874 43 58899999999888877642 24556777765432110 0
Q ss_pred CCCCCCccceEEecCCCCccccccccchhhhcccccchHHHHHHHhhhcCCc-EEEEcccc
Q psy12304 188 SLPQKHEVDLIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLSFCDLFQPK-YIILENVT 247 (620)
Q Consensus 188 ~~p~~~~vD~i~gGpPCQ~fS~~~~~~~~~~~d~r~~L~~~~~~~i~~~~P~-~~v~ENV~ 247 (620)
.. ..+.+|+|+...++..+ . -...+++.++.++|. ++++.|+.
T Consensus 129 ~~-~~~~fD~V~~d~~~~~~-----------~-----~~~~~~~~~~~LkpgG~lv~~~~~ 172 (221)
T 3u81_A 129 KY-DVDTLDMVFLDHWKDRY-----------L-----PDTLLLEKCGLLRKGTVLLADNVI 172 (221)
T ss_dssp TS-CCCCCSEEEECSCGGGH-----------H-----HHHHHHHHTTCCCTTCEEEESCCC
T ss_pred hc-CCCceEEEEEcCCcccc-----------h-----HHHHHHHhccccCCCeEEEEeCCC
Confidence 00 12479999876543221 0 011333333677885 46677775
No 176
>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}
Probab=91.74 E-value=0.14 Score=53.85 Aligned_cols=65 Identities=29% Similarity=0.301 Sum_probs=45.6
Q ss_pred ceecccccccHHHHHHHhcCCCccEEEEcCchhH---HHHHHHhcC-C-CcccccchHHHHHHhhcccccccCcCCCCCC
Q psy12304 119 KCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSE---AASYDANFQ-E-CSVIQDDCNLVLKSLLKGHTQHKGVSLPQKH 193 (620)
Q Consensus 119 ~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a---~~ty~~N~p-~-~~~~~~di~~~~~~~~~~~~~~~~~~~p~~~ 193 (620)
+|||+-||.|.||+-..++|. +-++|||.++.+ .+..+.|.- + ..++.+|+.++ .+| .
T Consensus 86 ~VLDvG~GtGiLs~~Aa~aGA-~~V~ave~s~~~~~a~~~~~~n~~~~~i~~i~~~~~~~--------------~lp--e 148 (376)
T 4hc4_A 86 TVLDVGAGTGILSIFCAQAGA-RRVYAVEASAIWQQAREVVRFNGLEDRVHVLPGPVETV--------------ELP--E 148 (376)
T ss_dssp EEEEETCTTSHHHHHHHHTTC-SEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTC--------------CCS--S
T ss_pred EEEEeCCCccHHHHHHHHhCC-CEEEEEeChHHHHHHHHHHHHcCCCceEEEEeeeeeee--------------cCC--c
Confidence 699999999999999999998 679999998643 344445532 1 33444554322 233 5
Q ss_pred ccceEEe
Q psy12304 194 EVDLIVA 200 (620)
Q Consensus 194 ~vD~i~g 200 (620)
.+|+|+.
T Consensus 149 ~~Dvivs 155 (376)
T 4hc4_A 149 QVDAIVS 155 (376)
T ss_dssp CEEEEEC
T ss_pred cccEEEe
Confidence 8999985
No 177
>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A
Probab=91.59 E-value=0.29 Score=50.50 Aligned_cols=73 Identities=16% Similarity=0.268 Sum_probs=54.3
Q ss_pred CcceecccccccHHHHHHHhc-CCCccEEEEcCchhHHHHHHHhcC---------CCcccccchHHHHHHhhcccccccC
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQA-GVAKPCWSVELERSEAASYDANFQ---------ECSVIQDDCNLVLKSLLKGHTQHKG 186 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~a-G~~~~~~a~e~d~~a~~ty~~N~p---------~~~~~~~di~~~~~~~~~~~~~~~~ 186 (620)
..++|||-||.|+++.-+... +. .-+.++|+|+.+++.-+.|++ ...++.+|+.+.+..
T Consensus 121 ~~~VLdIG~G~G~~a~~la~~~~~-~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~---------- 189 (334)
T 1xj5_A 121 PKKVLVIGGGDGGVLREVARHASI-EQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKN---------- 189 (334)
T ss_dssp CCEEEEETCSSSHHHHHHTTCTTC-CEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHT----------
T ss_pred CCEEEEECCCccHHHHHHHHcCCC-CEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHh----------
Confidence 358999999999999998875 33 468899999999999888763 345667787665321
Q ss_pred cCCCCCCccceEEecCC
Q psy12304 187 VSLPQKHEVDLIVAGPP 203 (620)
Q Consensus 187 ~~~p~~~~vD~i~gGpP 203 (620)
.+ .+.+|+|+..++
T Consensus 190 --~~-~~~fDlIi~d~~ 203 (334)
T 1xj5_A 190 --AA-EGSYDAVIVDSS 203 (334)
T ss_dssp --SC-TTCEEEEEECCC
T ss_pred --cc-CCCccEEEECCC
Confidence 11 247999998654
No 178
>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1
Probab=91.59 E-value=0.13 Score=52.54 Aligned_cols=76 Identities=16% Similarity=0.115 Sum_probs=53.5
Q ss_pred CcceecccccccHHHHHHHhcCC-CccEEEEcCchhHHHHHHHhc-----CCCcccccchHHHHHHhhcccccccCcCCC
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQAGV-AKPCWSVELERSEAASYDANF-----QECSVIQDDCNLVLKSLLKGHTQHKGVSLP 190 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~aG~-~~~~~a~e~d~~a~~ty~~N~-----p~~~~~~~di~~~~~~~~~~~~~~~~~~~p 190 (620)
..++||+.||.|.++.-+...+. ...+.++|+++.+++.-+.|. ++..+..+|+.+. .+
T Consensus 76 ~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~---------------~~ 140 (317)
T 1dl5_A 76 GMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYG---------------VP 140 (317)
T ss_dssp TCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGC---------------CG
T ss_pred cCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhc---------------cc
Confidence 35899999999999988887654 124889999999988877774 2334444554321 22
Q ss_pred CCCccceEEecCCCCcc
Q psy12304 191 QKHEVDLIVAGPPCQGF 207 (620)
Q Consensus 191 ~~~~vD~i~gGpPCQ~f 207 (620)
..+.+|+|+...++..+
T Consensus 141 ~~~~fD~Iv~~~~~~~~ 157 (317)
T 1dl5_A 141 EFSPYDVIFVTVGVDEV 157 (317)
T ss_dssp GGCCEEEEEECSBBSCC
T ss_pred cCCCeEEEEEcCCHHHH
Confidence 23579999998886543
No 179
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}
Probab=91.55 E-value=0.18 Score=48.64 Aligned_cols=71 Identities=10% Similarity=0.077 Sum_probs=51.1
Q ss_pred CcceecccccccHHHHHHHhc---CCCccEEEEcCchhHHHHHHHhcC-------CCcccccchHHHHHHhhcccccccC
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQA---GVAKPCWSVELERSEAASYDANFQ-------ECSVIQDDCNLVLKSLLKGHTQHKG 186 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~a---G~~~~~~a~e~d~~a~~ty~~N~p-------~~~~~~~di~~~~~~~~~~~~~~~~ 186 (620)
..++||+.||.|..++.+..+ |. .+.++|+++..++.-+.|+. +..++.+|..+++.
T Consensus 57 ~~~vLdiG~G~G~~~~~la~~~~~~~--~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~----------- 123 (221)
T 3dr5_A 57 STGAIAITPAAGLVGLYILNGLADNT--TLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMS----------- 123 (221)
T ss_dssp CCEEEEESTTHHHHHHHHHHHSCTTS--EEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGG-----------
T ss_pred CCCEEEEcCCchHHHHHHHHhCCCCC--EEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHH-----------
Confidence 348999999999999988874 33 48899999999888877753 34456677665521
Q ss_pred cCCCCCCccceEEecC
Q psy12304 187 VSLPQKHEVDLIVAGP 202 (620)
Q Consensus 187 ~~~p~~~~vD~i~gGp 202 (620)
.++ .+.+|+|+...
T Consensus 124 -~~~-~~~fD~V~~d~ 137 (221)
T 3dr5_A 124 -RLA-NDSYQLVFGQV 137 (221)
T ss_dssp -GSC-TTCEEEEEECC
T ss_pred -Hhc-CCCcCeEEEcC
Confidence 111 35799998653
No 180
>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}
Probab=91.49 E-value=0.21 Score=49.65 Aligned_cols=71 Identities=20% Similarity=0.154 Sum_probs=52.4
Q ss_pred CcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcC------CCcccccchHHHHHHhhcccccccCcCCC
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQ------ECSVIQDDCNLVLKSLLKGHTQHKGVSLP 190 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p------~~~~~~~di~~~~~~~~~~~~~~~~~~~p 190 (620)
..++||+-||.|.++.-+...|. + +.++|+++.+++..+.+.. +..++.+|+.++. ..
T Consensus 69 ~~~vLDiGcG~G~~~~~l~~~~~-~-v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-------------~~- 132 (285)
T 4htf_A 69 KLRVLDAGGGEGQTAIKMAERGH-Q-VILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVA-------------SH- 132 (285)
T ss_dssp CCEEEEETCTTCHHHHHHHHTTC-E-EEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTG-------------GG-
T ss_pred CCEEEEeCCcchHHHHHHHHCCC-E-EEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhh-------------hh-
Confidence 46899999999999999999987 4 8899999999988887752 3334555654320 01
Q ss_pred CCCccceEEecCC
Q psy12304 191 QKHEVDLIVAGPP 203 (620)
Q Consensus 191 ~~~~vD~i~gGpP 203 (620)
..+.+|+|+....
T Consensus 133 ~~~~fD~v~~~~~ 145 (285)
T 4htf_A 133 LETPVDLILFHAV 145 (285)
T ss_dssp CSSCEEEEEEESC
T ss_pred cCCCceEEEECch
Confidence 2357999997543
No 181
>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}
Probab=91.47 E-value=2.2 Score=48.83 Aligned_cols=165 Identities=14% Similarity=0.115 Sum_probs=84.5
Q ss_pred CcceecccccccHHHHHHHhcC--C-CccEEEEcCchhHHHHH--HHhcCCC---------cccccchHHHHHHhhcccc
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQAG--V-AKPCWSVELERSEAASY--DANFQEC---------SVIQDDCNLVLKSLLKGHT 182 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~aG--~-~~~~~a~e~d~~a~~ty--~~N~p~~---------~~~~~di~~~~~~~~~~~~ 182 (620)
..+++|.+||.|++.+.+.... . ...++++|+|+.+++.- +.|.-.. .+..+|....
T Consensus 322 g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~--------- 392 (878)
T 3s1s_A 322 DEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSL--------- 392 (878)
T ss_dssp TCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGC---------
T ss_pred CCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcc---------
Confidence 4689999999999998877532 1 13589999999998877 6554210 1112222110
Q ss_pred cccCcCCCCCCccceEEecCCCCccccccccchh-------------hhcccccchHHHHHH-HhhhcCCcEEEEccc-c
Q psy12304 183 QHKGVSLPQKHEVDLIVAGPPCQGFSQLNRAREL-------------EKSKLKNGLVFTFLS-FCDLFQPKYIILENV-T 247 (620)
Q Consensus 183 ~~~~~~~p~~~~vD~i~gGpPCQ~fS~~~~~~~~-------------~~~d~r~~L~~~~~~-~i~~~~P~~~v~ENV-~ 247 (620)
.....+.+|+|++-||=-........... ........+...|+. .++.++|.-.+.==+ .
T Consensus 393 -----~~~~~~kFDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIlP~ 467 (878)
T 3s1s_A 393 -----NPEDFANVSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIMPK 467 (878)
T ss_dssp -----CGGGGTTEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEEET
T ss_pred -----cccccCCCCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEECh
Confidence 01123479999999996332211110000 000111234444444 456677753221111 2
Q ss_pred ccccccchhHHHHHHHHHHcCCCEEEEEEEec-CCCCCcccccEEEEEEec
Q psy12304 248 GLVHFNKNEILQCIFHCLLKMNYQVTFDVLQS-GNYGVAQSRNRVVILASK 297 (620)
Q Consensus 248 gl~~~~~~~~~~~i~~~l~~~GY~v~~~~l~A-~~yGvPQ~R~R~fivg~~ 297 (620)
+++.. .+...+.+.+.|.+.+.-.....+.. .-|.-... .=++++..+
T Consensus 468 s~Lf~-sg~~~kkLRk~LLe~~~I~aIIdLP~~~~F~~asv-~T~ILIlrK 516 (878)
T 3s1s_A 468 QYLTA-QGNESKAFREFLVGNFGLEHIFLYPREGLFEEVIK-DTVVFVGRK 516 (878)
T ss_dssp HHHHC-CSHHHHHHHHHHTTTTCEEEEEECCBCCSSCSCBC-CEEEEEEET
T ss_pred HHhcc-CChHHHHHHHHHHhCCCeEEEEECCCccccCCCCC-cEEEEEEEc
Confidence 33321 12345566667766655554445555 45643332 344444444
No 182
>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}
Probab=91.46 E-value=0.22 Score=54.06 Aligned_cols=69 Identities=25% Similarity=0.264 Sum_probs=48.1
Q ss_pred CcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhc------CCCcccccchHHHHHHhhcccccccCcCCC
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANF------QECSVIQDDCNLVLKSLLKGHTQHKGVSLP 190 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~------p~~~~~~~di~~~~~~~~~~~~~~~~~~~p 190 (620)
..+++|+.||.|.+++-+...|. .-+.|+|+++ +++.-+.|. ....++.+|+.+ ++
T Consensus 159 ~~~VLDiGcGtG~la~~la~~~~-~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~~~----------------~~ 220 (480)
T 3b3j_A 159 DKIVLDVGCGSGILSFFAAQAGA-RKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEE----------------VS 220 (480)
T ss_dssp TCEEEEESCSTTHHHHHHHHTTC-SEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEESCTTT----------------CC
T ss_pred CCEEEEecCcccHHHHHHHHcCC-CEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEECchhh----------------Cc
Confidence 45899999999999999988886 5689999998 555544442 223444445422 22
Q ss_pred CCCccceEEecCC
Q psy12304 191 QKHEVDLIVAGPP 203 (620)
Q Consensus 191 ~~~~vD~i~gGpP 203 (620)
.++.+|+|+..++
T Consensus 221 ~~~~fD~Ivs~~~ 233 (480)
T 3b3j_A 221 LPEQVDIIISEPM 233 (480)
T ss_dssp CSSCEEEEECCCC
T ss_pred cCCCeEEEEEeCc
Confidence 2357999998765
No 183
>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6
Probab=91.45 E-value=0.28 Score=50.29 Aligned_cols=69 Identities=20% Similarity=0.193 Sum_probs=47.5
Q ss_pred cceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcC------CCcccccchHHHHHHhhcccccccCcCCCC
Q psy12304 118 LKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQ------ECSVIQDDCNLVLKSLLKGHTQHKGVSLPQ 191 (620)
Q Consensus 118 l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p------~~~~~~~di~~~~~~~~~~~~~~~~~~~p~ 191 (620)
.++||+.||.|.+++-+.++|. .-++|+|+++ .++..+.|.. ...++.+|+.++ .+|
T Consensus 40 ~~VLDiGcGtG~ls~~la~~g~-~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~--------------~~~- 102 (328)
T 1g6q_1 40 KIVLDVGCGTGILSMFAAKHGA-KHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLEDV--------------HLP- 102 (328)
T ss_dssp CEEEEETCTTSHHHHHHHHTCC-SEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTS--------------CCS-
T ss_pred CEEEEecCccHHHHHHHHHCCC-CEEEEEChHH-HHHHHHHHHHHcCCCCCEEEEECchhhc--------------cCC-
Confidence 4799999999999999999987 5699999994 5555554431 133444444321 122
Q ss_pred CCccceEEecCC
Q psy12304 192 KHEVDLIVAGPP 203 (620)
Q Consensus 192 ~~~vD~i~gGpP 203 (620)
.+.+|+|+..++
T Consensus 103 ~~~~D~Ivs~~~ 114 (328)
T 1g6q_1 103 FPKVDIIISEWM 114 (328)
T ss_dssp SSCEEEEEECCC
T ss_pred CCcccEEEEeCc
Confidence 257999998765
No 184
>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*
Probab=91.42 E-value=0.11 Score=54.90 Aligned_cols=103 Identities=13% Similarity=0.064 Sum_probs=65.5
Q ss_pred CCcceecccccccHHHHHHH-hcCCCccEEEEcCchhHHHHHHHhc--------------CCCcccccchHHHHHHhhcc
Q psy12304 116 TPLKCLDLFSGCGGLMEGLC-QAGVAKPCWSVELERSEAASYDANF--------------QECSVIQDDCNLVLKSLLKG 180 (620)
Q Consensus 116 ~~l~~~dLFsG~Gg~s~Gl~-~aG~~~~~~a~e~d~~a~~ty~~N~--------------p~~~~~~~di~~~~~~~~~~ 180 (620)
..-+++||-||.|.+.+.+. ..|. .-++++|+++.+++.-+.|. ++..++++|+.++.-.
T Consensus 173 ~gd~VLDLGCGtG~l~l~lA~~~g~-~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD~~~lp~~---- 247 (438)
T 3uwp_A 173 DDDLFVDLGSGVGQVVLQVAAATNC-KHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWR---- 247 (438)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHCCC-SEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECCTTSHHHH----
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECcccCCccc----
Confidence 34579999999999998876 4676 55899999998776655431 3455667777543110
Q ss_pred cccccCcCCCCCCccceEEecCCCCccccccccchhhhcccccchHHHHHHHhhhcCC--cEEEEccccc
Q psy12304 181 HTQHKGVSLPQKHEVDLIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLSFCDLFQP--KYIILENVTG 248 (620)
Q Consensus 181 ~~~~~~~~~p~~~~vD~i~gGpPCQ~fS~~~~~~~~~~~d~r~~L~~~~~~~i~~~~P--~~~v~ENV~g 248 (620)
..+ +.+|+|+..++| |.. + +-..+.++.+.++| +++++|.+..
T Consensus 248 ------d~~---~~aDVVf~Nn~~--F~p----------d----l~~aL~Ei~RvLKPGGrIVssE~f~p 292 (438)
T 3uwp_A 248 ------ERI---ANTSVIFVNNFA--FGP----------E----VDHQLKERFANMKEGGRIVSSKPFAP 292 (438)
T ss_dssp ------HHH---HTCSEEEECCTT--CCH----------H----HHHHHHHHHTTSCTTCEEEESSCSSC
T ss_pred ------ccc---CCccEEEEcccc--cCc----------h----HHHHHHHHHHcCCCCcEEEEeecccC
Confidence 001 268999998876 321 1 11122345567787 5666666653
No 185
>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17
Probab=91.40 E-value=0.38 Score=49.07 Aligned_cols=148 Identities=14% Similarity=0.155 Sum_probs=83.6
Q ss_pred cceecccccccHHHHHHHhc-CCCccEEEEcCchhHHHHHHHhcCC---------CcccccchHHHHHHhhcccccccCc
Q psy12304 118 LKCLDLFSGCGGLMEGLCQA-GVAKPCWSVELERSEAASYDANFQE---------CSVIQDDCNLVLKSLLKGHTQHKGV 187 (620)
Q Consensus 118 l~~~dLFsG~Gg~s~Gl~~a-G~~~~~~a~e~d~~a~~ty~~N~p~---------~~~~~~di~~~~~~~~~~~~~~~~~ 187 (620)
.++||+-||.|++..-+... +. .-+.++|+|+.+++.-+.|++. ..++.+|+.+.+..
T Consensus 110 ~~VLdIG~G~G~~~~~l~~~~~~-~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~----------- 177 (314)
T 2b2c_A 110 KRVLIIGGGDGGILREVLKHESV-EKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKN----------- 177 (314)
T ss_dssp CEEEEESCTTSHHHHHHTTCTTC-CEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHH-----------
T ss_pred CEEEEEcCCcCHHHHHHHHcCCC-CEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHh-----------
Confidence 48999999999999988765 33 4689999999999999988753 34566777654321
Q ss_pred CCCCCCccceEEecCCCCccccccccchhhhcccccchH-HHHHH-HhhhcCCcEEEEccccccccccchhHHHHHHHHH
Q psy12304 188 SLPQKHEVDLIVAGPPCQGFSQLNRARELEKSKLKNGLV-FTFLS-FCDLFQPKYIILENVTGLVHFNKNEILQCIFHCL 265 (620)
Q Consensus 188 ~~p~~~~vD~i~gGpPCQ~fS~~~~~~~~~~~d~r~~L~-~~~~~-~i~~~~P~~~v~ENV~gl~~~~~~~~~~~i~~~l 265 (620)
..+.+|+|+..++.. +.. ...|+ .++++ +.+.++|.-+++=|..... .....+..+.+.+
T Consensus 178 ---~~~~fD~Ii~d~~~~-~~~------------~~~l~t~~~l~~~~~~LkpgG~lv~~~~~~~--~~~~~~~~~~~~l 239 (314)
T 2b2c_A 178 ---HKNEFDVIITDSSDP-VGP------------AESLFGQSYYELLRDALKEDGILSSQGESVW--LHLPLIAHLVAFN 239 (314)
T ss_dssp ---CTTCEEEEEECCC--------------------------HHHHHHHHEEEEEEEEEECCCTT--TCHHHHHHHHHHH
T ss_pred ---cCCCceEEEEcCCCC-CCc------------chhhhHHHHHHHHHhhcCCCeEEEEECCCcc--cCHHHHHHHHHHH
Confidence 124689999877532 110 01122 33333 3456789865554432211 1234455666666
Q ss_pred HcCCCEEEEEEEecCCCCCcccccEEEEEEecC
Q psy12304 266 LKMNYQVTFDVLQSGNYGVAQSRNRVVILASKP 298 (620)
Q Consensus 266 ~~~GY~v~~~~l~A~~yGvPQ~R~R~fivg~~~ 298 (620)
.+.-=.+......--.|.. =.--|+++++.
T Consensus 240 ~~vF~~v~~~~~~iP~~~~---g~~g~~~ask~ 269 (314)
T 2b2c_A 240 RKIFPAVTYAQSIVSTYPS---GSMGYLICAKN 269 (314)
T ss_dssp HHHCSEEEEEEEECTTSGG---GEEEEEEEESS
T ss_pred HHHCCcceEEEEEecCcCC---CceEEEEEeCC
Confidence 6543334433222222211 11247777654
No 186
>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}
Probab=91.38 E-value=0.19 Score=45.62 Aligned_cols=68 Identities=15% Similarity=0.208 Sum_probs=53.7
Q ss_pred CcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcCCCcccccchHHHHHHhhcccccccCcCCCCCCccc
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQECSVIQDDCNLVLKSLLKGHTQHKGVSLPQKHEVD 196 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p~~~~~~~di~~~~~~~~~~~~~~~~~~~p~~~~vD 196 (620)
..++||+-||.|.++.-+...+. .+.++|+++.+++..+.+.++..+..+| . .++ .+.+|
T Consensus 18 ~~~vLDiG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~v~~~~~d---~--------------~~~-~~~~D 77 (170)
T 3i9f_A 18 KGVIVDYGCGNGFYCKYLLEFAT--KLYCIDINVIALKEVKEKFDSVITLSDP---K--------------EIP-DNSVD 77 (170)
T ss_dssp CEEEEEETCTTCTTHHHHHTTEE--EEEEECSCHHHHHHHHHHCTTSEEESSG---G--------------GSC-TTCEE
T ss_pred CCeEEEECCCCCHHHHHHHhhcC--eEEEEeCCHHHHHHHHHhCCCcEEEeCC---C--------------CCC-CCceE
Confidence 45899999999999999999884 5889999999999999987777666666 1 111 24799
Q ss_pred eEEecCCC
Q psy12304 197 LIVAGPPC 204 (620)
Q Consensus 197 ~i~gGpPC 204 (620)
+|+.....
T Consensus 78 ~v~~~~~l 85 (170)
T 3i9f_A 78 FILFANSF 85 (170)
T ss_dssp EEEEESCS
T ss_pred EEEEccch
Confidence 99976543
No 187
>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*
Probab=91.33 E-value=1 Score=49.55 Aligned_cols=146 Identities=11% Similarity=0.019 Sum_probs=77.8
Q ss_pred CcceecccccccHHHHHHHhc----CC--------------CccEEEEcCchhHHHHHHHhc-----CC-----Cccccc
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQA----GV--------------AKPCWSVELERSEAASYDANF-----QE-----CSVIQD 168 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~a----G~--------------~~~~~a~e~d~~a~~ty~~N~-----p~-----~~~~~~ 168 (620)
..+++|.+||.|||.+.+... +- ...++++|+++.+.+.-+.|. .. ..+.++
T Consensus 170 ~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~~~~~~~~~I~~g 249 (541)
T 2ar0_A 170 REVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLG 249 (541)
T ss_dssp TCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBSEEES
T ss_pred CCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCCccccccCCeEeC
Confidence 468999999999998776531 10 125899999999998887772 11 234444
Q ss_pred chHHHHHHhhcccccccCcCCCCCCccceEEecCCCCccccccccchhhhcccccchHHH-HHHHhhhcCCc--EEEEcc
Q psy12304 169 DCNLVLKSLLKGHTQHKGVSLPQKHEVDLIVAGPPCQGFSQLNRARELEKSKLKNGLVFT-FLSFCDLFQPK--YIILEN 245 (620)
Q Consensus 169 di~~~~~~~~~~~~~~~~~~~p~~~~vD~i~gGpPCQ~fS~~~~~~~~~~~d~r~~L~~~-~~~~i~~~~P~--~~v~EN 245 (620)
|..... ....+.+|+|++-||.-+....... .+..-+.+..... +..+++.++|. +.++
T Consensus 250 DtL~~~--------------~~~~~~fD~Vv~NPPf~~~~~~~~~--~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V-- 311 (541)
T 2ar0_A 250 NTLGSD--------------GENLPKAHIVATNPPFGSAAGTNIT--RTFVHPTSNKQLCFMQHIIETLHPGGRAAVV-- 311 (541)
T ss_dssp CTTSHH--------------HHTSCCEEEEEECCCCTTCSSCCCC--SCCSSCCSCHHHHHHHHHHHHEEEEEEEEEE--
T ss_pred CCcccc--------------cccccCCeEEEECCCcccccchhhH--hhcCCCCCchHHHHHHHHHHHhCCCCEEEEE--
Confidence 432110 0012479999999998766543210 0011011222222 33456677884 3333
Q ss_pred cc-ccccccchhHHHHHHHHHHcCCCEEEEEEEecCCC
Q psy12304 246 VT-GLVHFNKNEILQCIFHCLLKMNYQVTFDVLQSGNY 282 (620)
Q Consensus 246 V~-gl~~~~~~~~~~~i~~~l~~~GY~v~~~~l~A~~y 282 (620)
++ +++... .....+.+.|.+.++-.....|...-|
T Consensus 312 ~p~~~L~~~--~~~~~iR~~L~~~~~l~~ii~Lp~~~F 347 (541)
T 2ar0_A 312 VPDNVLFEG--GKGTDIRRDLMDKCHLHTILRLPTGIF 347 (541)
T ss_dssp EEHHHHHCC--THHHHHHHHHHHHEEEEEEEECCSSCS
T ss_pred ecCcceecC--cHHHHHHHHHhhcCCEEEEEEcCcCcc
Confidence 22 333221 123445555555454333444555555
No 188
>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*
Probab=91.32 E-value=0.31 Score=50.40 Aligned_cols=70 Identities=23% Similarity=0.226 Sum_probs=48.5
Q ss_pred CcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhc-----CC-CcccccchHHHHHHhhcccccccCcCCC
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANF-----QE-CSVIQDDCNLVLKSLLKGHTQHKGVSLP 190 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~-----p~-~~~~~~di~~~~~~~~~~~~~~~~~~~p 190 (620)
..++||+.||.|.+++.+.++|. .-++++|+++ +++..+.|. ++ ..++.+|+.++ .+|
T Consensus 67 ~~~VLDvGcG~G~~~~~la~~g~-~~v~gvD~s~-~l~~a~~~~~~~~~~~~v~~~~~d~~~~--------------~~~ 130 (349)
T 3q7e_A 67 DKVVLDVGSGTGILCMFAAKAGA-RKVIGIECSS-ISDYAVKIVKANKLDHVVTIIKGKVEEV--------------ELP 130 (349)
T ss_dssp TCEEEEESCTTSHHHHHHHHTTC-SEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTC--------------CCS
T ss_pred CCEEEEEeccchHHHHHHHHCCC-CEEEEECcHH-HHHHHHHHHHHcCCCCcEEEEECcHHHc--------------cCC
Confidence 35799999999999999999987 5799999995 555544442 11 34445555321 122
Q ss_pred CCCccceEEecCC
Q psy12304 191 QKHEVDLIVAGPP 203 (620)
Q Consensus 191 ~~~~vD~i~gGpP 203 (620)
.+.+|+|+..+.
T Consensus 131 -~~~fD~Iis~~~ 142 (349)
T 3q7e_A 131 -VEKVDIIISEWM 142 (349)
T ss_dssp -SSCEEEEEECCC
T ss_pred -CCceEEEEEccc
Confidence 368999998654
No 189
>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}
Probab=91.27 E-value=0.31 Score=47.12 Aligned_cols=42 Identities=19% Similarity=0.327 Sum_probs=35.9
Q ss_pred CcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhc
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANF 160 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~ 160 (620)
.-+++|+.||.|.++.-+...+. .+.++|+++.+++.-+.|.
T Consensus 92 ~~~vldiG~G~G~~~~~l~~~~~--~v~~vD~~~~~~~~a~~~~ 133 (248)
T 2yvl_A 92 EKRVLEFGTGSGALLAVLSEVAG--EVWTFEAVEEFYKTAQKNL 133 (248)
T ss_dssp TCEEEEECCTTSHHHHHHHHHSS--EEEEECSCHHHHHHHHHHH
T ss_pred CCEEEEeCCCccHHHHHHHHhCC--EEEEEecCHHHHHHHHHHH
Confidence 35899999999999988888754 5889999999998888775
No 190
>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}
Probab=91.18 E-value=0.18 Score=52.06 Aligned_cols=71 Identities=20% Similarity=0.231 Sum_probs=50.8
Q ss_pred cceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcCC----CcccccchHHHHHHhhcccccccCcCCCCCC
Q psy12304 118 LKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQE----CSVIQDDCNLVLKSLLKGHTQHKGVSLPQKH 193 (620)
Q Consensus 118 l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p~----~~~~~~di~~~~~~~~~~~~~~~~~~~p~~~ 193 (620)
-+++||.||.|.++..+...|-..-+.++|+++.+++.-+.|... ..++.+|+. ..+ .+
T Consensus 198 ~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d~~----------------~~~-~~ 260 (343)
T 2pjd_A 198 GKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEGEVFASNVF----------------SEV-KG 260 (343)
T ss_dssp SBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCCCEEEECSTT----------------TTC-CS
T ss_pred CeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCEEEEcccc----------------ccc-cC
Confidence 479999999999999998877412578999999998887776532 223333331 111 35
Q ss_pred ccceEEecCCCC
Q psy12304 194 EVDLIVAGPPCQ 205 (620)
Q Consensus 194 ~vD~i~gGpPCQ 205 (620)
.+|+|+..+|..
T Consensus 261 ~fD~Iv~~~~~~ 272 (343)
T 2pjd_A 261 RFDMIISNPPFH 272 (343)
T ss_dssp CEEEEEECCCCC
T ss_pred CeeEEEECCCcc
Confidence 799999999864
No 191
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}
Probab=91.16 E-value=0.2 Score=50.33 Aligned_cols=78 Identities=14% Similarity=0.089 Sum_probs=52.4
Q ss_pred CCcceecccccccHHHHHHHh--cCCCccEEEEcCchhHHHHHHHh-------cCCCcccccchHHHHHHhhcccccccC
Q psy12304 116 TPLKCLDLFSGCGGLMEGLCQ--AGVAKPCWSVELERSEAASYDAN-------FQECSVIQDDCNLVLKSLLKGHTQHKG 186 (620)
Q Consensus 116 ~~l~~~dLFsG~Gg~s~Gl~~--aG~~~~~~a~e~d~~a~~ty~~N-------~p~~~~~~~di~~~~~~~~~~~~~~~~ 186 (620)
...++||+-||.|.++.-+.. .+. ..+.++|+++.+++..+.+ .++..++.+|+.++.. ...
T Consensus 36 ~~~~vLDiGcG~G~~~~~la~~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~--------~~~ 106 (299)
T 3g5t_A 36 ERKLLVDVGCGPGTATLQMAQELKPF-EQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKF--------LGA 106 (299)
T ss_dssp CCSEEEEETCTTTHHHHHHHHHSSCC-SEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGG--------GCT
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCC-CEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCc--------ccc
Confidence 356899999999999999985 344 4689999999998888776 3455556666643200 000
Q ss_pred cCCCCCCccceEEecCC
Q psy12304 187 VSLPQKHEVDLIVAGPP 203 (620)
Q Consensus 187 ~~~p~~~~vD~i~gGpP 203 (620)
..+ ..+.+|+|+....
T Consensus 107 ~~~-~~~~fD~V~~~~~ 122 (299)
T 3g5t_A 107 DSV-DKQKIDMITAVEC 122 (299)
T ss_dssp TTT-TSSCEEEEEEESC
T ss_pred ccc-cCCCeeEEeHhhH
Confidence 001 1257999998654
No 192
>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36
Probab=91.15 E-value=0.18 Score=47.65 Aligned_cols=42 Identities=19% Similarity=0.146 Sum_probs=37.0
Q ss_pred CcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhc
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANF 160 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~ 160 (620)
..++||+-||.|..+.-|...|+ + +.++|+++.+++..+.+.
T Consensus 23 ~~~vLD~GCG~G~~~~~la~~g~-~-V~gvD~S~~~l~~a~~~~ 64 (203)
T 1pjz_A 23 GARVLVPLCGKSQDMSWLSGQGY-H-VVGAELSEAAVERYFTER 64 (203)
T ss_dssp TCEEEETTTCCSHHHHHHHHHCC-E-EEEEEECHHHHHHHHHHH
T ss_pred CCEEEEeCCCCcHhHHHHHHCCC-e-EEEEeCCHHHHHHHHHHc
Confidence 35899999999999999998897 4 889999999999887764
No 193
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}
Probab=91.15 E-value=0.3 Score=46.93 Aligned_cols=69 Identities=19% Similarity=0.178 Sum_probs=50.7
Q ss_pred CcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhc--CCCcccccchHHHHHHhhcccccccCcCCCCCCc
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANF--QECSVIQDDCNLVLKSLLKGHTQHKGVSLPQKHE 194 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~--p~~~~~~~di~~~~~~~~~~~~~~~~~~~p~~~~ 194 (620)
..++||+-||.|.++.-+...|. + +.++|+++.+++..+.+. ++..++.+|+.++ .+ ..+.
T Consensus 54 ~~~vLDiG~G~G~~~~~l~~~~~-~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~--------------~~-~~~~ 116 (242)
T 3l8d_A 54 EAEVLDVGCGDGYGTYKLSRTGY-K-AVGVDISEVMIQKGKERGEGPDLSFIKGDLSSL--------------PF-ENEQ 116 (242)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTC-E-EEEEESCHHHHHHHHTTTCBTTEEEEECBTTBC--------------SS-CTTC
T ss_pred CCeEEEEcCCCCHHHHHHHHcCC-e-EEEEECCHHHHHHHHhhcccCCceEEEcchhcC--------------CC-CCCC
Confidence 35899999999999999999987 4 789999999999988874 2333444454321 12 1357
Q ss_pred cceEEecC
Q psy12304 195 VDLIVAGP 202 (620)
Q Consensus 195 vD~i~gGp 202 (620)
+|+|+...
T Consensus 117 fD~v~~~~ 124 (242)
T 3l8d_A 117 FEAIMAIN 124 (242)
T ss_dssp EEEEEEES
T ss_pred ccEEEEcC
Confidence 99998743
No 194
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
Probab=91.13 E-value=0.28 Score=46.26 Aligned_cols=67 Identities=15% Similarity=0.027 Sum_probs=50.0
Q ss_pred cceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhc-CCCcccccchHHHHHHhhcccccccCcCCCCCCccc
Q psy12304 118 LKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANF-QECSVIQDDCNLVLKSLLKGHTQHKGVSLPQKHEVD 196 (620)
Q Consensus 118 l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~-p~~~~~~~di~~~~~~~~~~~~~~~~~~~p~~~~vD 196 (620)
.++||+.||.|.++.-+...|. -+.++|+++.+++.-+.+. ++..++.+|+.+ +...+.+|
T Consensus 48 ~~vLdiG~G~G~~~~~l~~~~~--~v~~~D~s~~~~~~a~~~~~~~~~~~~~d~~~----------------~~~~~~~D 109 (218)
T 3ou2_A 48 GDVLELASGTGYWTRHLSGLAD--RVTALDGSAEMIAEAGRHGLDNVEFRQQDLFD----------------WTPDRQWD 109 (218)
T ss_dssp SEEEEESCTTSHHHHHHHHHSS--EEEEEESCHHHHHHHGGGCCTTEEEEECCTTS----------------CCCSSCEE
T ss_pred CeEEEECCCCCHHHHHHHhcCC--eEEEEeCCHHHHHHHHhcCCCCeEEEeccccc----------------CCCCCcee
Confidence 4899999999999999998886 4789999999988877643 344455555421 12346899
Q ss_pred eEEecC
Q psy12304 197 LIVAGP 202 (620)
Q Consensus 197 ~i~gGp 202 (620)
+|+...
T Consensus 110 ~v~~~~ 115 (218)
T 3ou2_A 110 AVFFAH 115 (218)
T ss_dssp EEEEES
T ss_pred EEEEec
Confidence 999753
No 195
>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A
Probab=91.11 E-value=0.18 Score=47.16 Aligned_cols=66 Identities=20% Similarity=0.071 Sum_probs=48.6
Q ss_pred ceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcC----CCcccccchHHHHHHhhcccccccCcCCCCCCc
Q psy12304 119 KCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQ----ECSVIQDDCNLVLKSLLKGHTQHKGVSLPQKHE 194 (620)
Q Consensus 119 ~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p----~~~~~~~di~~~~~~~~~~~~~~~~~~~p~~~~ 194 (620)
++||+.||.|.++.-+...|. .+.++|+++.+++.-+.+.. +..+..+|+.++ .+ ..+.
T Consensus 32 ~vLdiGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~--------------~~-~~~~ 94 (202)
T 2kw5_A 32 KILCLAEGEGRNACFLASLGY--EVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADF--------------DI-VADA 94 (202)
T ss_dssp EEEECCCSCTHHHHHHHTTTC--EEEEECSSHHHHHHHHHHHHHHTCCEEEECCBTTTB--------------SC-CTTT
T ss_pred CEEEECCCCCHhHHHHHhCCC--eEEEEECCHHHHHHHHHHHHhcCCceEEEEcChhhc--------------CC-CcCC
Confidence 899999999999999999887 48899999999887776642 334445554321 11 2357
Q ss_pred cceEEec
Q psy12304 195 VDLIVAG 201 (620)
Q Consensus 195 vD~i~gG 201 (620)
+|+|+..
T Consensus 95 fD~v~~~ 101 (202)
T 2kw5_A 95 WEGIVSI 101 (202)
T ss_dssp CSEEEEE
T ss_pred ccEEEEE
Confidence 9999874
No 196
>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*
Probab=90.83 E-value=0.23 Score=49.90 Aligned_cols=42 Identities=26% Similarity=0.344 Sum_probs=37.5
Q ss_pred ceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcCC
Q psy12304 119 KCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQE 162 (620)
Q Consensus 119 ~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p~ 162 (620)
++||+.||.|.++.-|...|. + +.++|+++.+++.-+.+...
T Consensus 85 ~vLDlGcG~G~~~~~l~~~~~-~-v~gvD~s~~~~~~a~~~~~~ 126 (299)
T 3g2m_A 85 PVLELAAGMGRLTFPFLDLGW-E-VTALELSTSVLAAFRKRLAE 126 (299)
T ss_dssp CEEEETCTTTTTHHHHHTTTC-C-EEEEESCHHHHHHHHHHHHT
T ss_pred cEEEEeccCCHHHHHHHHcCC-e-EEEEECCHHHHHHHHHHHhh
Confidence 899999999999999999986 4 88999999999988887643
No 197
>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24
Probab=90.69 E-value=0.021 Score=56.13 Aligned_cols=71 Identities=20% Similarity=0.254 Sum_probs=49.9
Q ss_pred CcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcC---CCcccccchHHHHHHhhcccccccCcCCCCCC
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQ---ECSVIQDDCNLVLKSLLKGHTQHKGVSLPQKH 193 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p---~~~~~~~di~~~~~~~~~~~~~~~~~~~p~~~ 193 (620)
.-+++|+.||.|+++.-+...|. -+.++|+|+.+++..+.|.. +..++++|+.++ .++..+
T Consensus 30 ~~~VLDiG~G~G~~~~~l~~~~~--~v~~id~~~~~~~~a~~~~~~~~~v~~~~~D~~~~--------------~~~~~~ 93 (245)
T 1yub_A 30 TDTVYEIGTGKGHLTTKLAKISK--QVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQF--------------QFPNKQ 93 (245)
T ss_dssp SEEEEECSCCCSSCSHHHHHHSS--EEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTT--------------TCCCSS
T ss_pred CCEEEEEeCCCCHHHHHHHHhCC--eEEEEECCHHHHHHHHHHhccCCceEEEECChhhc--------------CcccCC
Confidence 35899999999999999988874 48899999988877666652 334555565322 122123
Q ss_pred ccceEEecCCC
Q psy12304 194 EVDLIVAGPPC 204 (620)
Q Consensus 194 ~vD~i~gGpPC 204 (620)
.+ .|++.||-
T Consensus 94 ~f-~vv~n~Py 103 (245)
T 1yub_A 94 RY-KIVGNIPY 103 (245)
T ss_dssp EE-EEEEECCS
T ss_pred Cc-EEEEeCCc
Confidence 56 77888884
No 198
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*
Probab=90.46 E-value=0.29 Score=47.58 Aligned_cols=72 Identities=22% Similarity=0.194 Sum_probs=51.9
Q ss_pred CcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcCC------CcccccchHHHHHHhhcccccccCcCCC
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQE------CSVIQDDCNLVLKSLLKGHTQHKGVSLP 190 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p~------~~~~~~di~~~~~~~~~~~~~~~~~~~p 190 (620)
..++||+-||.|.++.-+...+. ..+.++|+++.+++..+.|... ..++.+|+. .+|
T Consensus 47 ~~~vLDiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~----------------~~~ 109 (257)
T 3f4k_A 47 DAKIADIGCGTGGQTLFLADYVK-GQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMD----------------NLP 109 (257)
T ss_dssp TCEEEEETCTTSHHHHHHHHHCC-SEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTT----------------SCS
T ss_pred CCeEEEeCCCCCHHHHHHHHhCC-CeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChh----------------hCC
Confidence 35899999999999999998865 3689999999999887777532 333444442 222
Q ss_pred -CCCccceEEecCCCC
Q psy12304 191 -QKHEVDLIVAGPPCQ 205 (620)
Q Consensus 191 -~~~~vD~i~gGpPCQ 205 (620)
..+.+|+|+......
T Consensus 110 ~~~~~fD~v~~~~~l~ 125 (257)
T 3f4k_A 110 FQNEELDLIWSEGAIY 125 (257)
T ss_dssp SCTTCEEEEEEESCSC
T ss_pred CCCCCEEEEEecChHh
Confidence 235799998875443
No 199
>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*
Probab=90.43 E-value=0.24 Score=47.80 Aligned_cols=73 Identities=16% Similarity=0.195 Sum_probs=50.4
Q ss_pred CcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcC-----CCcccccchHHHHHHhhcccccccCcCCCC
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQ-----ECSVIQDDCNLVLKSLLKGHTQHKGVSLPQ 191 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p-----~~~~~~~di~~~~~~~~~~~~~~~~~~~p~ 191 (620)
.-++||+.||.|.++.-+...+- ..+.++|+++.+++.-+.|.. +..+..+|+. ..++.
T Consensus 92 ~~~vLdiG~G~G~~~~~la~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~---------------~~~~~ 155 (235)
T 1jg1_A 92 GMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGS---------------KGFPP 155 (235)
T ss_dssp TCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGG---------------GCCGG
T ss_pred CCEEEEEeCCcCHHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCcc---------------cCCCC
Confidence 34799999999999998887652 358899999999888877752 2333344431 12233
Q ss_pred CCccceEEecCCCC
Q psy12304 192 KHEVDLIVAGPPCQ 205 (620)
Q Consensus 192 ~~~vD~i~gGpPCQ 205 (620)
.+.+|+|+...++.
T Consensus 156 ~~~fD~Ii~~~~~~ 169 (235)
T 1jg1_A 156 KAPYDVIIVTAGAP 169 (235)
T ss_dssp GCCEEEEEECSBBS
T ss_pred CCCccEEEECCcHH
Confidence 33589999876653
No 200
>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A
Probab=90.38 E-value=0.24 Score=50.10 Aligned_cols=41 Identities=27% Similarity=0.260 Sum_probs=36.7
Q ss_pred cceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhc
Q psy12304 118 LKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANF 160 (620)
Q Consensus 118 l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~ 160 (620)
-.|||+|||.|...+.+...|. -.+++|+++.+++.-+.|.
T Consensus 237 ~~vlD~f~GsGt~~~~a~~~g~--~~~g~e~~~~~~~~a~~r~ 277 (297)
T 2zig_A 237 DVVLDPFAGTGTTLIAAARWGR--RALGVELVPRYAQLAKERF 277 (297)
T ss_dssp CEEEETTCTTTHHHHHHHHTTC--EEEEEESCHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHcCC--eEEEEeCCHHHHHHHHHHH
Confidence 4799999999999999999996 4889999999998887775
No 201
>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0
Probab=90.35 E-value=0.14 Score=48.20 Aligned_cols=48 Identities=19% Similarity=0.147 Sum_probs=37.4
Q ss_pred CcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcCCCcccccchHH
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQECSVIQDDCNL 172 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p~~~~~~~di~~ 172 (620)
..++|||.||.|+++.-+.+.+. .+.|+|+++.+ ..++..++.+|+.+
T Consensus 26 g~~VLDlG~G~G~~s~~la~~~~--~V~gvD~~~~~------~~~~v~~~~~D~~~ 73 (191)
T 3dou_A 26 GDAVIEIGSSPGGWTQVLNSLAR--KIISIDLQEME------EIAGVRFIRCDIFK 73 (191)
T ss_dssp TCEEEEESCTTCHHHHHHTTTCS--EEEEEESSCCC------CCTTCEEEECCTTS
T ss_pred CCEEEEEeecCCHHHHHHHHcCC--cEEEEeccccc------cCCCeEEEEccccC
Confidence 45899999999999999988754 58899999863 34566667777653
No 202
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Probab=90.10 E-value=0.35 Score=55.08 Aligned_cols=101 Identities=14% Similarity=0.122 Sum_probs=61.1
Q ss_pred CcceecccccccHHHHHHHhc------CCC------------------------------------ccEEEEcCchhHHH
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQA------GVA------------------------------------KPCWSVELERSEAA 154 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~a------G~~------------------------------------~~~~a~e~d~~a~~ 154 (620)
.-+++|.|||.|++.+.+... |.. ..++++|+|+.|++
T Consensus 191 ~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~i~G~Did~~av~ 270 (703)
T 3v97_A 191 GTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHFYGSDSDARVIQ 270 (703)
T ss_dssp TSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEESCHHHHH
T ss_pred CCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCccEEEEECCHHHHH
Confidence 347999999999988655442 110 15899999999999
Q ss_pred HHHHhcCCC------cccccchHHHHHHhhcccccccCcCCCC-CCccceEEecCCCCccccccccchhhhcccccchHH
Q psy12304 155 SYDANFQEC------SVIQDDCNLVLKSLLKGHTQHKGVSLPQ-KHEVDLIVAGPPCQGFSQLNRARELEKSKLKNGLVF 227 (620)
Q Consensus 155 ty~~N~p~~------~~~~~di~~~~~~~~~~~~~~~~~~~p~-~~~vD~i~gGpPCQ~fS~~~~~~~~~~~d~r~~L~~ 227 (620)
.-+.|.-.. .+..+|+.++ ..|. .+.+|+|+.-||= |.. -+....-..|+.
T Consensus 271 ~A~~N~~~agv~~~i~~~~~D~~~~--------------~~~~~~~~~d~Iv~NPPY------G~R--lg~~~~l~~ly~ 328 (703)
T 3v97_A 271 RARTNARLAGIGELITFEVKDVAQL--------------TNPLPKGPYGTVLSNPPY------GER--LDSEPALIALHS 328 (703)
T ss_dssp HHHHHHHHTTCGGGEEEEECCGGGC--------------CCSCTTCCCCEEEECCCC------CC-----CCHHHHHHHH
T ss_pred HHHHHHHHcCCCCceEEEECChhhC--------------ccccccCCCCEEEeCCCc------ccc--ccchhHHHHHHH
Confidence 988884221 2233444221 1122 2278999999994 210 011112234666
Q ss_pred HHHHHhhhcCCc
Q psy12304 228 TFLSFCDLFQPK 239 (620)
Q Consensus 228 ~~~~~i~~~~P~ 239 (620)
.+.++++...|-
T Consensus 329 ~l~~~lk~~~~g 340 (703)
T 3v97_A 329 LLGRIMKNQFGG 340 (703)
T ss_dssp HHHHHHHHHCTT
T ss_pred HHHHHHHhhCCC
Confidence 677777776663
No 203
>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}
Probab=90.08 E-value=0.36 Score=45.56 Aligned_cols=69 Identities=9% Similarity=0.021 Sum_probs=49.5
Q ss_pred cceecccccccHHHHHHHhc---CCCccEEEEcCchhHHHHHHHhcC------CCcccccchHHHHHHhhcccccccCcC
Q psy12304 118 LKCLDLFSGCGGLMEGLCQA---GVAKPCWSVELERSEAASYDANFQ------ECSVIQDDCNLVLKSLLKGHTQHKGVS 188 (620)
Q Consensus 118 l~~~dLFsG~Gg~s~Gl~~a---G~~~~~~a~e~d~~a~~ty~~N~p------~~~~~~~di~~~~~~~~~~~~~~~~~~ 188 (620)
.++||+.||.|..++.+..+ |. .+.++|+++.+++.-+.|+. ...++.+|..+.+. .
T Consensus 58 ~~vLdiG~G~G~~~~~la~~~~~~~--~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~------------~ 123 (210)
T 3c3p_A 58 QLVVVPGDGLGCASWWFARAISISS--RVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAA------------G 123 (210)
T ss_dssp SEEEEESCGGGHHHHHHHTTSCTTC--EEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHT------------T
T ss_pred CEEEEEcCCccHHHHHHHHhCCCCC--EEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhc------------c
Confidence 47999999999999998875 43 58899999999988887753 23455566654321 1
Q ss_pred CCCCCccceEEecCC
Q psy12304 189 LPQKHEVDLIVAGPP 203 (620)
Q Consensus 189 ~p~~~~vD~i~gGpP 203 (620)
. .+ +|+|+...+
T Consensus 124 ~--~~-fD~v~~~~~ 135 (210)
T 3c3p_A 124 Q--RD-IDILFMDCD 135 (210)
T ss_dssp C--CS-EEEEEEETT
T ss_pred C--CC-CCEEEEcCC
Confidence 1 24 899987643
No 204
>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*
Probab=90.01 E-value=0.9 Score=44.11 Aligned_cols=46 Identities=7% Similarity=-0.137 Sum_probs=38.7
Q ss_pred CCcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcCC
Q psy12304 116 TPLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQE 162 (620)
Q Consensus 116 ~~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p~ 162 (620)
...++||+-||.|.++.-+...|. .-+.++|+++.+++..+.+...
T Consensus 56 ~~~~vLDlGcG~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~ 101 (265)
T 2i62_A 56 KGELLIDIGSGPTIYQLLSACESF-TEIIVSDYTDQNLWELQKWLKK 101 (265)
T ss_dssp CEEEEEEESCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHHHHHTT
T ss_pred CCCEEEEECCCccHHHHHHhhccc-CeEEEecCCHHHHHHHHHHHhc
Confidence 346899999999999988888886 5689999999999888877654
No 205
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}
Probab=89.97 E-value=0.36 Score=47.61 Aligned_cols=74 Identities=14% Similarity=0.092 Sum_probs=52.0
Q ss_pred CCcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhc-----CCCcccccchHHHHHHhhcccccccCcCCC
Q psy12304 116 TPLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANF-----QECSVIQDDCNLVLKSLLKGHTQHKGVSLP 190 (620)
Q Consensus 116 ~~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~-----p~~~~~~~di~~~~~~~~~~~~~~~~~~~p 190 (620)
...++||+.||.|.++..+...+-...+.++|+++.+++.-+.+. ++..++.+|+.++ .+
T Consensus 37 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~--------------~~- 101 (276)
T 3mgg_A 37 PGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSL--------------PF- 101 (276)
T ss_dssp TTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGC--------------CS-
T ss_pred CCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccC--------------CC-
Confidence 346899999999999999988742135889999999888877764 3344455555322 11
Q ss_pred CCCccceEEecCCC
Q psy12304 191 QKHEVDLIVAGPPC 204 (620)
Q Consensus 191 ~~~~vD~i~gGpPC 204 (620)
..+.+|+|+.....
T Consensus 102 ~~~~fD~v~~~~~l 115 (276)
T 3mgg_A 102 EDSSFDHIFVCFVL 115 (276)
T ss_dssp CTTCEEEEEEESCG
T ss_pred CCCCeeEEEEechh
Confidence 23579999986543
No 206
>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*
Probab=89.94 E-value=0.47 Score=45.79 Aligned_cols=70 Identities=17% Similarity=0.216 Sum_probs=50.5
Q ss_pred CCcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhc-----CCCcccccchHHHHHHhhcccccccCcCCC
Q psy12304 116 TPLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANF-----QECSVIQDDCNLVLKSLLKGHTQHKGVSLP 190 (620)
Q Consensus 116 ~~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~-----p~~~~~~~di~~~~~~~~~~~~~~~~~~~p 190 (620)
...++||+.||.|.++..+...|. .+.++|+++.+++..+.+. ++..+..+|+. .+|
T Consensus 21 ~~~~vLDiGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~----------------~~~ 82 (239)
T 1xxl_A 21 AEHRVLDIGAGAGHTALAFSPYVQ--ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAE----------------SLP 82 (239)
T ss_dssp TTCEEEEESCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTT----------------BCC
T ss_pred CCCEEEEEccCcCHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccc----------------cCC
Confidence 345899999999999999998875 5889999999988777664 33444444542 122
Q ss_pred C-CCccceEEecCC
Q psy12304 191 Q-KHEVDLIVAGPP 203 (620)
Q Consensus 191 ~-~~~vD~i~gGpP 203 (620)
. .+.+|+|+....
T Consensus 83 ~~~~~fD~v~~~~~ 96 (239)
T 1xxl_A 83 FPDDSFDIITCRYA 96 (239)
T ss_dssp SCTTCEEEEEEESC
T ss_pred CCCCcEEEEEECCc
Confidence 2 357999987643
No 207
>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}
Probab=89.93 E-value=0.24 Score=47.36 Aligned_cols=78 Identities=15% Similarity=0.072 Sum_probs=51.3
Q ss_pred CcceecccccccHHHHHHHhcCC-----CccEEEEcCchhHHHHHHHhc----------CCCcccccchHHHHHHhhccc
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQAGV-----AKPCWSVELERSEAASYDANF----------QECSVIQDDCNLVLKSLLKGH 181 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~aG~-----~~~~~a~e~d~~a~~ty~~N~----------p~~~~~~~di~~~~~~~~~~~ 181 (620)
..++||+.||.|.++.-+...+. ...+.++|+++.+++.-+.|. ++..+..+|+.+.....
T Consensus 81 ~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~---- 156 (227)
T 2pbf_A 81 GSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEE---- 156 (227)
T ss_dssp TCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHH----
T ss_pred CCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhccccc----
Confidence 35899999999999988877531 125889999999988877763 23444455553210000
Q ss_pred ccccCcCCCCCCccceEEecCCCC
Q psy12304 182 TQHKGVSLPQKHEVDLIVAGPPCQ 205 (620)
Q Consensus 182 ~~~~~~~~p~~~~vD~i~gGpPCQ 205 (620)
.+..+.+|+|+.+.++.
T Consensus 157 -------~~~~~~fD~I~~~~~~~ 173 (227)
T 2pbf_A 157 -------KKELGLFDAIHVGASAS 173 (227)
T ss_dssp -------HHHHCCEEEEEECSBBS
T ss_pred -------CccCCCcCEEEECCchH
Confidence 01224689998887764
No 208
>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3
Probab=89.89 E-value=2.1 Score=40.58 Aligned_cols=146 Identities=12% Similarity=0.025 Sum_probs=75.5
Q ss_pred CcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHH---hcCCCcccccchHHHHHHhhcccccccCcCCCCCC
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDA---NFQECSVIQDDCNLVLKSLLKGHTQHKGVSLPQKH 193 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~---N~p~~~~~~~di~~~~~~~~~~~~~~~~~~~p~~~ 193 (620)
.-++||+-||.|.++.-+...+-...++|+|+++.+++.... ..++...+.+|+... ....+..+
T Consensus 58 g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~~~v~~~~~d~~~~------------~~~~~~~~ 125 (210)
T 1nt2_A 58 DERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKP------------WKYSGIVE 125 (210)
T ss_dssp SCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCG------------GGTTTTCC
T ss_pred CCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcCCCeEEEEcCCCCc------------hhhccccc
Confidence 358999999999998877764211358999999986543322 233333444454321 00012236
Q ss_pred ccceEEecCCCCccccccccchhhhcccccchHHHHHHHhhhcCCcEEEEccccc--c-ccccchhHHHHHHHHHHcCCC
Q psy12304 194 EVDLIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLSFCDLFQPKYIILENVTG--L-VHFNKNEILQCIFHCLLKMNY 270 (620)
Q Consensus 194 ~vD~i~gGpPCQ~fS~~~~~~~~~~~d~r~~L~~~~~~~i~~~~P~~~v~ENV~g--l-~~~~~~~~~~~i~~~l~~~GY 270 (620)
.+|+|+...+ .. +....++. ++-+.++|.-.++=.++. + .......++...++.|.+. |
T Consensus 126 ~fD~V~~~~~-------~~-------~~~~~~l~---~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~-f 187 (210)
T 1nt2_A 126 KVDLIYQDIA-------QK-------NQIEILKA---NAEFFLKEKGEVVIMVKARSIDSTAEPEEVFKSVLKEMEGD-F 187 (210)
T ss_dssp CEEEEEECCC-------ST-------THHHHHHH---HHHHHEEEEEEEEEEEEHHHHCTTSCHHHHHHHHHHHHHTT-S
T ss_pred ceeEEEEecc-------Ch-------hHHHHHHH---HHHHHhCCCCEEEEEEecCCccccCCHHHHHHHHHHHHHhh-c
Confidence 7999987621 10 00111122 344567885433222321 1 1111234454455667877 8
Q ss_pred EEEEEEEecCCCCCcccccEEEEEEec
Q psy12304 271 QVTFDVLQSGNYGVAQSRNRVVILASK 297 (620)
Q Consensus 271 ~v~~~~l~A~~yGvPQ~R~R~fivg~~ 297 (620)
.+...+- -. |-.+.-++++|.+
T Consensus 188 ~~~~~~~-~~----p~~~~h~~~~~~~ 209 (210)
T 1nt2_A 188 KIVKHGS-LM----PYHRDHIFIHAYR 209 (210)
T ss_dssp EEEEEEE-CT----TTCTTEEEEEEEE
T ss_pred EEeeeec-CC----CCCCCcEEEEEEc
Confidence 7655432 22 3334567777653
No 209
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=89.80 E-value=0.12 Score=51.05 Aligned_cols=53 Identities=19% Similarity=0.161 Sum_probs=40.9
Q ss_pred cceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcC---CCcccccchHH
Q psy12304 118 LKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQ---ECSVIQDDCNL 172 (620)
Q Consensus 118 l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p---~~~~~~~di~~ 172 (620)
-+++|+-||.|.++. +.. |...-+.|+|+|+..++..+.|+. +..++++|+.+
T Consensus 23 ~~VLEIG~G~G~lt~-l~~-~~~~~v~avEid~~~~~~a~~~~~~~~~v~~i~~D~~~ 78 (252)
T 1qyr_A 23 QAMVEIGPGLAALTE-PVG-ERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMT 78 (252)
T ss_dssp CCEEEECCTTTTTHH-HHH-TTCSCEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGG
T ss_pred CEEEEECCCCcHHHH-hhh-CCCCeEEEEECCHHHHHHHHHHhccCCceEEEECchhh
Confidence 479999999999999 875 331128899999999999988864 34566777654
No 210
>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}
Probab=89.76 E-value=0.25 Score=46.71 Aligned_cols=75 Identities=19% Similarity=0.134 Sum_probs=51.5
Q ss_pred CcceecccccccHHHHHHHhcC-CCccEEEEcCchhHHHHHHHhc-----CCCcccccchHHHHHHhhcccccccCcCCC
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQAG-VAKPCWSVELERSEAASYDANF-----QECSVIQDDCNLVLKSLLKGHTQHKGVSLP 190 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~aG-~~~~~~a~e~d~~a~~ty~~N~-----p~~~~~~~di~~~~~~~~~~~~~~~~~~~p 190 (620)
..++||+-||.|.++.-+...+ -...+.++|+++.+++.-+.|. ++..+..+|+.. .++
T Consensus 78 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~---------------~~~ 142 (215)
T 2yxe_A 78 GMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTL---------------GYE 142 (215)
T ss_dssp TCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGG---------------CCG
T ss_pred CCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCccc---------------CCC
Confidence 4589999999999998888765 1125889999999888877764 233344444421 122
Q ss_pred CCCccceEEecCCCCc
Q psy12304 191 QKHEVDLIVAGPPCQG 206 (620)
Q Consensus 191 ~~~~vD~i~gGpPCQ~ 206 (620)
..+.+|+|+...++..
T Consensus 143 ~~~~fD~v~~~~~~~~ 158 (215)
T 2yxe_A 143 PLAPYDRIYTTAAGPK 158 (215)
T ss_dssp GGCCEEEEEESSBBSS
T ss_pred CCCCeeEEEECCchHH
Confidence 2357999998876543
No 211
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*
Probab=89.71 E-value=0.48 Score=46.11 Aligned_cols=71 Identities=18% Similarity=0.213 Sum_probs=52.0
Q ss_pred CCcceecccccccHHHHHHHhc-CCCccEEEEcCchhHHHHHHHhcC---CCcccccchHHHHHHhhcccccccCcCCCC
Q psy12304 116 TPLKCLDLFSGCGGLMEGLCQA-GVAKPCWSVELERSEAASYDANFQ---ECSVIQDDCNLVLKSLLKGHTQHKGVSLPQ 191 (620)
Q Consensus 116 ~~l~~~dLFsG~Gg~s~Gl~~a-G~~~~~~a~e~d~~a~~ty~~N~p---~~~~~~~di~~~~~~~~~~~~~~~~~~~p~ 191 (620)
...++||+-||.|.++.-+... |. .+.++|+++.+++..+.+.. +..+..+|+.++ .++
T Consensus 55 ~~~~vLdiG~G~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~--------------~~~- 117 (266)
T 3ujc_A 55 ENSKVLDIGSGLGGGCMYINEKYGA--HTHGIDICSNIVNMANERVSGNNKIIFEANDILTK--------------EFP- 117 (266)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHHCC--EEEEEESCHHHHHHHHHTCCSCTTEEEEECCTTTC--------------CCC-
T ss_pred CCCEEEEECCCCCHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHhhcCCCeEEEECccccC--------------CCC-
Confidence 3468999999999999999886 65 58899999999999988874 334444554321 111
Q ss_pred CCccceEEecCC
Q psy12304 192 KHEVDLIVAGPP 203 (620)
Q Consensus 192 ~~~vD~i~gGpP 203 (620)
.+.+|+|+....
T Consensus 118 ~~~fD~v~~~~~ 129 (266)
T 3ujc_A 118 ENNFDLIYSRDA 129 (266)
T ss_dssp TTCEEEEEEESC
T ss_pred CCcEEEEeHHHH
Confidence 357999997543
No 212
>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A
Probab=89.66 E-value=0.45 Score=46.24 Aligned_cols=69 Identities=16% Similarity=0.251 Sum_probs=51.0
Q ss_pred CcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhc----CCCcccccchHHHHHHhhcccccccCcCCC-C
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANF----QECSVIQDDCNLVLKSLLKGHTQHKGVSLP-Q 191 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~----p~~~~~~~di~~~~~~~~~~~~~~~~~~~p-~ 191 (620)
..++||+.||.|.++..+...|. .+.++|+++.+++.-+.+. ++..+..+|+. .+| .
T Consensus 40 ~~~vLDiG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~----------------~~~~~ 101 (263)
T 2yqz_A 40 EPVFLELGVGTGRIALPLIARGY--RYIALDADAAMLEVFRQKIAGVDRKVQVVQADAR----------------AIPLP 101 (263)
T ss_dssp CCEEEEETCTTSTTHHHHHTTTC--EEEEEESCHHHHHHHHHHTTTSCTTEEEEESCTT----------------SCCSC
T ss_pred CCEEEEeCCcCCHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhhccCCceEEEEcccc----------------cCCCC
Confidence 45899999999999999998875 4889999999999988885 33344444442 122 2
Q ss_pred CCccceEEecCC
Q psy12304 192 KHEVDLIVAGPP 203 (620)
Q Consensus 192 ~~~vD~i~gGpP 203 (620)
.+.+|+|+....
T Consensus 102 ~~~fD~v~~~~~ 113 (263)
T 2yqz_A 102 DESVHGVIVVHL 113 (263)
T ss_dssp TTCEEEEEEESC
T ss_pred CCCeeEEEECCc
Confidence 357999988543
No 213
>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}
Probab=89.44 E-value=1.1 Score=45.15 Aligned_cols=45 Identities=16% Similarity=0.239 Sum_probs=36.0
Q ss_pred CcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcCC
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQE 162 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p~ 162 (620)
..++||+-||.|+++.-+.+.|. .-++|+|+++..++.-..+.+.
T Consensus 86 g~~vLDiGcGTG~~t~~L~~~ga-~~V~aVDvs~~mL~~a~r~~~r 130 (291)
T 3hp7_A 86 DMITIDIGASTGGFTDVMLQNGA-KLVYAVDVGTNQLVWKLRQDDR 130 (291)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTC-SEEEEECSSSSCSCHHHHTCTT
T ss_pred ccEEEecCCCccHHHHHHHhCCC-CEEEEEECCHHHHHHHHHhCcc
Confidence 45899999999999999988887 5799999999876653344444
No 214
>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20
Probab=89.42 E-value=0.38 Score=45.11 Aligned_cols=42 Identities=10% Similarity=-0.142 Sum_probs=34.8
Q ss_pred cceecccccccHHHHHHHhc-CCCccEEEEcCchhHHHHHHHhc
Q psy12304 118 LKCLDLFSGCGGLMEGLCQA-GVAKPCWSVELERSEAASYDANF 160 (620)
Q Consensus 118 l~~~dLFsG~Gg~s~Gl~~a-G~~~~~~a~e~d~~a~~ty~~N~ 160 (620)
.+++|+.||.|.++..+... +. ..+.++|+++.+++..+.|.
T Consensus 67 ~~vLDiG~G~G~~~~~l~~~~~~-~~v~~vD~s~~~~~~a~~~~ 109 (207)
T 1jsx_A 67 ERFIDVGTGPGLPGIPLSIVRPE-AHFTLLDSLGKRVRFLRQVQ 109 (207)
T ss_dssp SEEEEETCTTTTTHHHHHHHCTT-SEEEEEESCHHHHHHHHHHH
T ss_pred CeEEEECCCCCHHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHH
Confidence 48999999999999888875 22 25889999999998888764
No 215
>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*
Probab=89.40 E-value=0.18 Score=45.55 Aligned_cols=78 Identities=17% Similarity=0.148 Sum_probs=50.5
Q ss_pred CcceecccccccHHHHHHHhc-CCCccEEEEcCchhHHHHHHHhcCCCcccccchHHHH--HHhhcccccccCcCCCCCC
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQA-GVAKPCWSVELERSEAASYDANFQECSVIQDDCNLVL--KSLLKGHTQHKGVSLPQKH 193 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~a-G~~~~~~a~e~d~~a~~ty~~N~p~~~~~~~di~~~~--~~~~~~~~~~~~~~~p~~~ 193 (620)
..+++|+.||.|+++..+... |-...+.++|+++ ..+. ++..+...|+.+.. ..+. ..+ ..+
T Consensus 23 ~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~-----~~~~~~~~d~~~~~~~~~~~--------~~~-~~~ 87 (180)
T 1ej0_A 23 GMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI-----VGVDFLQGDFRDELVMKALL--------ERV-GDS 87 (180)
T ss_dssp TCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC-----TTEEEEESCTTSHHHHHHHH--------HHH-TTC
T ss_pred CCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc-----CcEEEEEcccccchhhhhhh--------ccC-CCC
Confidence 348999999999999988876 4312588999998 5432 44555566664331 0000 001 124
Q ss_pred ccceEEecCCCCcccc
Q psy12304 194 EVDLIVAGPPCQGFSQ 209 (620)
Q Consensus 194 ~vD~i~gGpPCQ~fS~ 209 (620)
.+|+|+..+|+..+..
T Consensus 88 ~~D~i~~~~~~~~~~~ 103 (180)
T 1ej0_A 88 KVQVVMSDMAPNMSGT 103 (180)
T ss_dssp CEEEEEECCCCCCCSC
T ss_pred ceeEEEECCCccccCC
Confidence 7999999999876644
No 216
>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}
Probab=89.38 E-value=3.6 Score=45.15 Aligned_cols=149 Identities=13% Similarity=0.104 Sum_probs=78.7
Q ss_pred cceecccccccHHHHHHHh--------cC-------CCccEEEEcCchhHHHHHHHhcC--C--Ccc--cccchHHHHHH
Q psy12304 118 LKCLDLFSGCGGLMEGLCQ--------AG-------VAKPCWSVELERSEAASYDANFQ--E--CSV--IQDDCNLVLKS 176 (620)
Q Consensus 118 l~~~dLFsG~Gg~s~Gl~~--------aG-------~~~~~~a~e~d~~a~~ty~~N~p--~--~~~--~~~di~~~~~~ 176 (620)
.+++|.+||.|||-+.+.. .+ ....++++|+++.+...-+.|.- + ..+ .++|.-.
T Consensus 246 ~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~i~i~~gDtL~---- 321 (544)
T 3khk_A 246 GRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDFNFGKKNADSFL---- 321 (544)
T ss_dssp EEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCCBCCSSSCCTTT----
T ss_pred CeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCcccceeccchhc----
Confidence 3899999999999876532 11 01358999999999988877731 1 112 3343210
Q ss_pred hhcccccccCcCCCCCCccceEEecCCCCcccccc-ccch--h---h--------hcccccchHHHHHHHhhhcCCcE--
Q psy12304 177 LLKGHTQHKGVSLPQKHEVDLIVAGPPCQGFSQLN-RARE--L---E--------KSKLKNGLVFTFLSFCDLFQPKY-- 240 (620)
Q Consensus 177 ~~~~~~~~~~~~~p~~~~vD~i~gGpPCQ~fS~~~-~~~~--~---~--------~~d~r~~L~~~~~~~i~~~~P~~-- 240 (620)
........+|+|++-||=-.-.... .... + + .....+.-+.-+..+++.++|.-
T Consensus 322 ----------~~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~ 391 (544)
T 3khk_A 322 ----------DDQHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPTGSM 391 (544)
T ss_dssp ----------SCSCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEEEEEE
T ss_pred ----------CcccccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhccCceE
Confidence 0111235799999999954311000 0000 0 0 00111111222334567778743
Q ss_pred -EEEccccccccccchhHHHHHHHHHHcCCCEEEEEEEecCCCC
Q psy12304 241 -IILENVTGLVHFNKNEILQCIFHCLLKMNYQVTFDVLQSGNYG 283 (620)
Q Consensus 241 -~v~ENV~gl~~~~~~~~~~~i~~~l~~~GY~v~~~~l~A~~yG 283 (620)
+|+-| |++.. .+...+.+.+.|.+.++-....-|.+.-|.
T Consensus 392 aiVlP~--g~L~~-~~~~~~~iRk~Lle~~~l~aII~LP~~lF~ 432 (544)
T 3khk_A 392 ALLLAN--GSMSS-NTNNEGEIRKTLVEQDLVECMVALPGQLFT 432 (544)
T ss_dssp EEEEET--HHHHC-CGGGHHHHHHHHHHTTCEEEEEECCTTBCC
T ss_pred EEEecc--hhhhc-CcchHHHHHHHHHhCCcHhEEEECCCCCCC
Confidence 34322 33322 223455677777777775555556665553
No 217
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*
Probab=89.01 E-value=0.35 Score=48.18 Aligned_cols=42 Identities=19% Similarity=0.048 Sum_probs=36.7
Q ss_pred CcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhc
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANF 160 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~ 160 (620)
..++||+-||.|.++.-|...|. -+.++|+++.+++.-+.|.
T Consensus 58 ~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~l~~a~~~~ 99 (293)
T 3thr_A 58 CHRVLDVACGTGVDSIMLVEEGF--SVTSVDASDKMLKYALKER 99 (293)
T ss_dssp CCEEEETTCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHH
T ss_pred CCEEEEecCCCCHHHHHHHHCCC--eEEEEECCHHHHHHHHHhh
Confidence 45899999999999999999997 4889999999998887653
No 218
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}
Probab=88.87 E-value=0.36 Score=48.61 Aligned_cols=70 Identities=9% Similarity=-0.015 Sum_probs=49.4
Q ss_pred CcceecccccccHHHHHHH--hcCCCccEEEEcCchhHHHHHHHhcCCC------cccccchHHHHHHhhcccccccCcC
Q psy12304 117 PLKCLDLFSGCGGLMEGLC--QAGVAKPCWSVELERSEAASYDANFQEC------SVIQDDCNLVLKSLLKGHTQHKGVS 188 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~--~aG~~~~~~a~e~d~~a~~ty~~N~p~~------~~~~~di~~~~~~~~~~~~~~~~~~ 188 (620)
..++||+.||.|.++..+. ...- .-+.++|+++.+++.-+.|.... .++.+|+.+
T Consensus 119 ~~~vLDiGcG~G~~~~~la~~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~---------------- 181 (305)
T 3ocj_A 119 GCVVASVPCGWMSELLALDYSACPG-VQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWK---------------- 181 (305)
T ss_dssp TCEEEETTCTTCHHHHTSCCTTCTT-CEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGG----------------
T ss_pred CCEEEEecCCCCHHHHHHHHhcCCC-CeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhc----------------
Confidence 4579999999999998883 2222 35889999999999999887642 334445432
Q ss_pred CCCCCccceEEecCC
Q psy12304 189 LPQKHEVDLIVAGPP 203 (620)
Q Consensus 189 ~p~~~~vD~i~gGpP 203 (620)
+|..+.+|+|+...+
T Consensus 182 ~~~~~~fD~v~~~~~ 196 (305)
T 3ocj_A 182 LDTREGYDLLTSNGL 196 (305)
T ss_dssp CCCCSCEEEEECCSS
T ss_pred CCccCCeEEEEECCh
Confidence 232368999996443
No 219
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}
Probab=88.82 E-value=0.24 Score=46.98 Aligned_cols=129 Identities=12% Similarity=0.069 Sum_probs=75.0
Q ss_pred CcceecccccccHHHHHHHhcC-CCccEEEEcCchhHHHHHHHhc-----CCCcccccchHHHHHHhhcccccccCcCCC
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQAG-VAKPCWSVELERSEAASYDANF-----QECSVIQDDCNLVLKSLLKGHTQHKGVSLP 190 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~aG-~~~~~~a~e~d~~a~~ty~~N~-----p~~~~~~~di~~~~~~~~~~~~~~~~~~~p 190 (620)
..++||+.||.|.++.-+...+ -...+.++|+++.+++..+.+. ++..++.+|+.++ .+
T Consensus 38 ~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~--------------~~- 102 (219)
T 3dh0_A 38 GMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKI--------------PL- 102 (219)
T ss_dssp TCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBC--------------SS-
T ss_pred CCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccC--------------CC-
Confidence 4589999999999999998875 2125889999999988877764 3344444554221 11
Q ss_pred CCCccceEEecCCCCccccccccchhhhcccccchHHHHHHHhhhcCCcE--EEEccccccccc----cchhHHHHHHHH
Q psy12304 191 QKHEVDLIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLSFCDLFQPKY--IILENVTGLVHF----NKNEILQCIFHC 264 (620)
Q Consensus 191 ~~~~vD~i~gGpPCQ~fS~~~~~~~~~~~d~r~~L~~~~~~~i~~~~P~~--~v~ENV~gl~~~----~~~~~~~~i~~~ 264 (620)
..+.+|+|+....-..+ .+ ...++. ++.+.++|.- ++.+-...-... ........+...
T Consensus 103 ~~~~fD~v~~~~~l~~~-----------~~-~~~~l~---~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (219)
T 3dh0_A 103 PDNTVDFIFMAFTFHEL-----------SE-PLKFLE---ELKRVAKPFAYLAIIDWKKEERDKGPPPEEVYSEWEVGLI 167 (219)
T ss_dssp CSSCEEEEEEESCGGGC-----------SS-HHHHHH---HHHHHEEEEEEEEEEEECSSCCSSSCCGGGSCCHHHHHHH
T ss_pred CCCCeeEEEeehhhhhc-----------CC-HHHHHH---HHHHHhCCCeEEEEEEecccccccCCchhcccCHHHHHHH
Confidence 23469999976432222 11 112232 3345567743 333322211100 011235677888
Q ss_pred HHcCCCEEEEE
Q psy12304 265 LLKMNYQVTFD 275 (620)
Q Consensus 265 l~~~GY~v~~~ 275 (620)
|.+.|+.+...
T Consensus 168 l~~~Gf~~~~~ 178 (219)
T 3dh0_A 168 LEDAGIRVGRV 178 (219)
T ss_dssp HHHTTCEEEEE
T ss_pred HHHCCCEEEEE
Confidence 88999986443
No 220
>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}
Probab=88.75 E-value=4.2 Score=44.59 Aligned_cols=151 Identities=14% Similarity=0.051 Sum_probs=80.0
Q ss_pred CCcceecccccccHHHHHHHhc----CCCccEEEEcCchhHHHHHHHhc---C----CCcccccchHHHHHHhhcccccc
Q psy12304 116 TPLKCLDLFSGCGGLMEGLCQA----GVAKPCWSVELERSEAASYDANF---Q----ECSVIQDDCNLVLKSLLKGHTQH 184 (620)
Q Consensus 116 ~~l~~~dLFsG~Gg~s~Gl~~a----G~~~~~~a~e~d~~a~~ty~~N~---p----~~~~~~~di~~~~~~~~~~~~~~ 184 (620)
...+++|.+||.|||-+.+... +- ..++++|+++.+...-+.|. . +..+.++|.- .
T Consensus 221 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~-~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL------------~ 287 (542)
T 3lkd_A 221 QGFTLYDATMGSGSLLLNAKRYSRQPQT-VVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTL------------D 287 (542)
T ss_dssp TTCEEEETTCTTSTTGGGHHHHCSCTTT-CEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTT------------T
T ss_pred CCCEEeecccchhHHHHHHHHHHHhccC-ceEEEEECcHHHHHHHHHHHHHcCCCcCccceEeccee------------c
Confidence 4568999999999988766543 32 46899999999998888773 1 1122333321 1
Q ss_pred cCcCCCCCCccceEEecCCCCccccccc-cchh------h-hcccccchHHHHHHHhhhcC-Cc---EEEEccccccccc
Q psy12304 185 KGVSLPQKHEVDLIVAGPPCQGFSQLNR-AREL------E-KSKLKNGLVFTFLSFCDLFQ-PK---YIILENVTGLVHF 252 (620)
Q Consensus 185 ~~~~~p~~~~vD~i~gGpPCQ~fS~~~~-~~~~------~-~~d~r~~L~~~~~~~i~~~~-P~---~~v~ENV~gl~~~ 252 (620)
........+.+|+|++-||=..-..... .... + .....+.-+.-+..++..++ |. +||+=| |++..
T Consensus 288 ~d~p~~~~~~fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~VlP~--g~Lf~ 365 (542)
T 3lkd_A 288 EDWPTQEPTNFDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAIVLPH--GVLFR 365 (542)
T ss_dssp SCSCCSSCCCBSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEEEEET--HHHHC
T ss_pred ccccccccccccEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEEEecc--hHhhC
Confidence 0000012357999999999653211110 0000 0 00001111222344566777 63 233322 33321
Q ss_pred cchhHHHHHHHHHHcCCCEEEEEEEecCCCC
Q psy12304 253 NKNEILQCIFHCLLKMNYQVTFDVLQSGNYG 283 (620)
Q Consensus 253 ~~~~~~~~i~~~l~~~GY~v~~~~l~A~~yG 283 (620)
+.....+.+.|.+.++-....-|.+.-|.
T Consensus 366 --~~~~~~iRk~Lle~~~l~~II~LP~~lF~ 394 (542)
T 3lkd_A 366 --GNAEGTIRKALLEEGAIDTVIGLPANIFF 394 (542)
T ss_dssp --CTHHHHHHHHHHHTTCEEEEEECCSSCSS
T ss_pred --CchhHHHHHHHHhCCceeEEEEccccccC
Confidence 12345667777777765555556665553
No 221
>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41
Probab=88.74 E-value=0.85 Score=44.60 Aligned_cols=69 Identities=16% Similarity=0.153 Sum_probs=50.7
Q ss_pred CcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcCCCcccccchHHHHHHhhcccccccCcCCCCCCccc
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQECSVIQDDCNLVLKSLLKGHTQHKGVSLPQKHEVD 196 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p~~~~~~~di~~~~~~~~~~~~~~~~~~~p~~~~vD 196 (620)
..++||+-||.|.++.-+...|. + +.++|+++.+++.-+.+... .+..+|+.++ .+ ..+.+|
T Consensus 55 ~~~vLDiGcG~G~~~~~l~~~~~-~-v~gvD~s~~~l~~a~~~~~~-~~~~~d~~~~--------------~~-~~~~fD 116 (260)
T 2avn_A 55 PCRVLDLGGGTGKWSLFLQERGF-E-VVLVDPSKEMLEVAREKGVK-NVVEAKAEDL--------------PF-PSGAFE 116 (260)
T ss_dssp CCEEEEETCTTCHHHHHHHTTTC-E-EEEEESCHHHHHHHHHHTCS-CEEECCTTSC--------------CS-CTTCEE
T ss_pred CCeEEEeCCCcCHHHHHHHHcCC-e-EEEEeCCHHHHHHHHhhcCC-CEEECcHHHC--------------CC-CCCCEE
Confidence 45899999999999999999886 4 88999999999998888753 2444444211 11 135789
Q ss_pred eEEecCC
Q psy12304 197 LIVAGPP 203 (620)
Q Consensus 197 ~i~gGpP 203 (620)
+|+....
T Consensus 117 ~v~~~~~ 123 (260)
T 2avn_A 117 AVLALGD 123 (260)
T ss_dssp EEEECSS
T ss_pred EEEEcch
Confidence 9986543
No 222
>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7
Probab=88.63 E-value=0.37 Score=46.21 Aligned_cols=74 Identities=18% Similarity=0.209 Sum_probs=50.4
Q ss_pred CcceecccccccHHHHHHHh-cCC-----CccEEEEcCchhHHHHHHHhc----------CCCcccccchHHHHHHhhcc
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQ-AGV-----AKPCWSVELERSEAASYDANF----------QECSVIQDDCNLVLKSLLKG 180 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~-aG~-----~~~~~a~e~d~~a~~ty~~N~----------p~~~~~~~di~~~~~~~~~~ 180 (620)
..++||+.||.|.++.-+.. .|. ...+.++|+++.+++.-+.|. ++..+..+|+.+
T Consensus 85 ~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~-------- 156 (227)
T 1r18_A 85 GARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRK-------- 156 (227)
T ss_dssp TCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGG--------
T ss_pred CCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCccc--------
Confidence 35899999999999988776 331 025889999999988777664 233344444421
Q ss_pred cccccCcCCCCCCccceEEecCCCC
Q psy12304 181 HTQHKGVSLPQKHEVDLIVAGPPCQ 205 (620)
Q Consensus 181 ~~~~~~~~~p~~~~vD~i~gGpPCQ 205 (620)
.++..+.+|+|+.+.++.
T Consensus 157 -------~~~~~~~fD~I~~~~~~~ 174 (227)
T 1r18_A 157 -------GYPPNAPYNAIHVGAAAP 174 (227)
T ss_dssp -------CCGGGCSEEEEEECSCBS
T ss_pred -------CCCcCCCccEEEECCchH
Confidence 123335799999888764
No 223
>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}
Probab=88.59 E-value=0.55 Score=45.60 Aligned_cols=80 Identities=16% Similarity=0.174 Sum_probs=51.7
Q ss_pred CCcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHh-----------cCCCcccccchHHHHHHhhcccccc
Q psy12304 116 TPLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDAN-----------FQECSVIQDDCNLVLKSLLKGHTQH 184 (620)
Q Consensus 116 ~~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N-----------~p~~~~~~~di~~~~~~~~~~~~~~ 184 (620)
...++||+-||.|.+...+....-...+.++|+++.+++.-+.| .++..++.+|+.+.+..
T Consensus 46 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~-------- 117 (235)
T 3ckk_A 46 AQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPN-------- 117 (235)
T ss_dssp CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHH--------
T ss_pred CCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhh--------
Confidence 45689999999999999988753213588999999887655432 33445566666432111
Q ss_pred cCcCCCCCCccceEEecCCCCcc
Q psy12304 185 KGVSLPQKHEVDLIVAGPPCQGF 207 (620)
Q Consensus 185 ~~~~~p~~~~vD~i~gGpPCQ~f 207 (620)
.+ ..+.+|.|+..+|..-+
T Consensus 118 ---~~-~~~~~D~v~~~~~dp~~ 136 (235)
T 3ckk_A 118 ---FF-YKGQLTKMFFLFPDPHF 136 (235)
T ss_dssp ---HC-CTTCEEEEEEESCC---
T ss_pred ---hC-CCcCeeEEEEeCCCchh
Confidence 02 23578999887776544
No 224
>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*
Probab=88.45 E-value=0.6 Score=47.17 Aligned_cols=43 Identities=21% Similarity=0.126 Sum_probs=36.4
Q ss_pred CCcceecccccccHHHHHHHhc-CCCccEEEEcCchhHHHHHHHhc
Q psy12304 116 TPLKCLDLFSGCGGLMEGLCQA-GVAKPCWSVELERSEAASYDANF 160 (620)
Q Consensus 116 ~~l~~~dLFsG~Gg~s~Gl~~a-G~~~~~~a~e~d~~a~~ty~~N~ 160 (620)
...++||+.||.|.++.-+... |. + +.++|+++.+++.-+.|.
T Consensus 117 ~~~~vLDiGcG~G~~~~~la~~~~~-~-v~gvD~s~~~~~~a~~~~ 160 (312)
T 3vc1_A 117 PDDTLVDAGCGRGGSMVMAHRRFGS-R-VEGVTLSAAQADFGNRRA 160 (312)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHHCC-E-EEEEESCHHHHHHHHHHH
T ss_pred CCCEEEEecCCCCHHHHHHHHHcCC-E-EEEEeCCHHHHHHHHHHH
Confidence 3458999999999999999887 75 4 889999999988877764
No 225
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}
Probab=88.40 E-value=0.57 Score=43.94 Aligned_cols=69 Identities=20% Similarity=0.335 Sum_probs=49.4
Q ss_pred ceecccccccHHHHHHHhc-CCCccEEEEcCchhHHHHHHHhcC------CCcccccchHHHHHHhhcccccccCcCCCC
Q psy12304 119 KCLDLFSGCGGLMEGLCQA-GVAKPCWSVELERSEAASYDANFQ------ECSVIQDDCNLVLKSLLKGHTQHKGVSLPQ 191 (620)
Q Consensus 119 ~~~dLFsG~Gg~s~Gl~~a-G~~~~~~a~e~d~~a~~ty~~N~p------~~~~~~~di~~~~~~~~~~~~~~~~~~~p~ 191 (620)
++||+.||.|.++.-+... |. .+.++|+++.+++.-+.+.. +..++.+|+.++ .++
T Consensus 46 ~vLdiG~G~G~~~~~l~~~~~~--~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~--------------~~~- 108 (219)
T 3dlc_A 46 TCIDIGSGPGALSIALAKQSDF--SIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNI--------------PIE- 108 (219)
T ss_dssp EEEEETCTTSHHHHHHHHHSEE--EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBC--------------SSC-
T ss_pred EEEEECCCCCHHHHHHHHcCCC--eEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHC--------------CCC-
Confidence 8999999999999999886 43 58899999999888887742 233444554221 121
Q ss_pred CCccceEEecCCC
Q psy12304 192 KHEVDLIVAGPPC 204 (620)
Q Consensus 192 ~~~vD~i~gGpPC 204 (620)
.+.+|+|+.....
T Consensus 109 ~~~~D~v~~~~~l 121 (219)
T 3dlc_A 109 DNYADLIVSRGSV 121 (219)
T ss_dssp TTCEEEEEEESCG
T ss_pred cccccEEEECchH
Confidence 3579999976543
No 226
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A
Probab=88.09 E-value=0.43 Score=47.49 Aligned_cols=70 Identities=16% Similarity=0.185 Sum_probs=51.0
Q ss_pred CCcceecccccccHHHHHHHhc---CCCccEEEEcCchhHHHHHHHhcCC----CcccccchHHHHHHhhcccccccCcC
Q psy12304 116 TPLKCLDLFSGCGGLMEGLCQA---GVAKPCWSVELERSEAASYDANFQE----CSVIQDDCNLVLKSLLKGHTQHKGVS 188 (620)
Q Consensus 116 ~~l~~~dLFsG~Gg~s~Gl~~a---G~~~~~~a~e~d~~a~~ty~~N~p~----~~~~~~di~~~~~~~~~~~~~~~~~~ 188 (620)
...++||+-||.|.++.-+... |. -+.++|+++.+.+..+.+... ..+..+|+. .
T Consensus 22 ~~~~vLDiGcG~G~~~~~l~~~~~~~~--~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~----------------~ 83 (284)
T 3gu3_A 22 KPVHIVDYGCGYGYLGLVLMPLLPEGS--KYTGIDSGETLLAEARELFRLLPYDSEFLEGDAT----------------E 83 (284)
T ss_dssp SCCEEEEETCTTTHHHHHHTTTSCTTC--EEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTT----------------T
T ss_pred CCCeEEEecCCCCHHHHHHHHhCCCCC--EEEEEECCHHHHHHHHHHHHhcCCceEEEEcchh----------------h
Confidence 4568999999999999999876 44 478999999999888877543 333444542 2
Q ss_pred CCCCCccceEEecCC
Q psy12304 189 LPQKHEVDLIVAGPP 203 (620)
Q Consensus 189 ~p~~~~vD~i~gGpP 203 (620)
+|..+.+|+|+....
T Consensus 84 ~~~~~~fD~v~~~~~ 98 (284)
T 3gu3_A 84 IELNDKYDIAICHAF 98 (284)
T ss_dssp CCCSSCEEEEEEESC
T ss_pred cCcCCCeeEEEECCh
Confidence 333468999998653
No 227
>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11
Probab=88.03 E-value=0.45 Score=47.03 Aligned_cols=42 Identities=14% Similarity=0.083 Sum_probs=36.9
Q ss_pred cceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcC
Q psy12304 118 LKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQ 161 (620)
Q Consensus 118 l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p 161 (620)
-.|||+|||.|.......+.|. -..++|+++.+++.-+.|..
T Consensus 214 ~~vlD~f~GsGtt~~~a~~~gr--~~ig~e~~~~~~~~~~~r~~ 255 (260)
T 1g60_A 214 DLVLDCFMGSGTTAIVAKKLGR--NFIGCDMNAEYVNQANFVLN 255 (260)
T ss_dssp CEEEESSCTTCHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHcCC--eEEEEeCCHHHHHHHHHHHH
Confidence 3799999999999999999996 47799999999998887753
No 228
>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*
Probab=87.99 E-value=0.82 Score=44.70 Aligned_cols=76 Identities=9% Similarity=0.054 Sum_probs=52.5
Q ss_pred cceecccccccHHHHHHHhc---CCCccEEEEcCchhHHHHHHHhcC------CCcccccchHHHHHHhhcccccccCcC
Q psy12304 118 LKCLDLFSGCGGLMEGLCQA---GVAKPCWSVELERSEAASYDANFQ------ECSVIQDDCNLVLKSLLKGHTQHKGVS 188 (620)
Q Consensus 118 l~~~dLFsG~Gg~s~Gl~~a---G~~~~~~a~e~d~~a~~ty~~N~p------~~~~~~~di~~~~~~~~~~~~~~~~~~ 188 (620)
-++||+.||.|..++-+..+ |. .+.++|+++.+++.-+.|+. ...++.+|..+.+...... .
T Consensus 81 ~~VLeiG~G~G~~~~~la~~~~~~~--~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~-------~ 151 (247)
T 1sui_A 81 KNTMEIGVYTGYSLLATALAIPEDG--KILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKD-------E 151 (247)
T ss_dssp CEEEEECCGGGHHHHHHHHHSCTTC--EEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHS-------G
T ss_pred CEEEEeCCCcCHHHHHHHHhCCCCC--EEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhc-------c
Confidence 48999999999999988875 44 48899999999888887753 2345667776654332110 0
Q ss_pred CCCCCccceEEecCC
Q psy12304 189 LPQKHEVDLIVAGPP 203 (620)
Q Consensus 189 ~p~~~~vD~i~gGpP 203 (620)
. ..+.+|+|+...+
T Consensus 152 ~-~~~~fD~V~~d~~ 165 (247)
T 1sui_A 152 K-NHGSYDFIFVDAD 165 (247)
T ss_dssp G-GTTCBSEEEECSC
T ss_pred C-CCCCEEEEEEcCc
Confidence 0 0246899987644
No 229
>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}
Probab=87.95 E-value=0.71 Score=45.21 Aligned_cols=98 Identities=15% Similarity=0.131 Sum_probs=63.5
Q ss_pred CcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcCCCcccccchHHHHHHhhcccccccCcCCCCCCccc
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQECSVIQDDCNLVLKSLLKGHTQHKGVSLPQKHEVD 196 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p~~~~~~~di~~~~~~~~~~~~~~~~~~~p~~~~vD 196 (620)
..++||+-||.|.++.-|...|. -+.++|+++..++.-+.+. +..+..+|+.++ .++ .+.+|
T Consensus 35 ~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~-~~~~~~~d~~~~--------------~~~-~~~fD 96 (261)
T 3ege_A 35 GSVIADIGAGTGGYSVALANQGL--FVYAVEPSIVMRQQAVVHP-QVEWFTGYAENL--------------ALP-DKSVD 96 (261)
T ss_dssp TCEEEEETCTTSHHHHHHHTTTC--EEEEECSCHHHHHSSCCCT-TEEEECCCTTSC--------------CSC-TTCBS
T ss_pred CCEEEEEcCcccHHHHHHHhCCC--EEEEEeCCHHHHHHHHhcc-CCEEEECchhhC--------------CCC-CCCEe
Confidence 46899999999999999998886 4889999998776544443 455555565321 121 35799
Q ss_pred eEEecCCCCccccccccchhhhcccccchHHHHHHHhhhcCCcEEEEccc
Q psy12304 197 LIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLSFCDLFQPKYIILENV 246 (620)
Q Consensus 197 ~i~gGpPCQ~fS~~~~~~~~~~~d~r~~L~~~~~~~i~~~~P~~~v~ENV 246 (620)
+|+.......+. + ...++.++.++++ .=.+++++-.
T Consensus 97 ~v~~~~~l~~~~-----------~-~~~~l~~~~~~Lk--gG~~~~~~~~ 132 (261)
T 3ege_A 97 GVISILAIHHFS-----------H-LEKSFQEMQRIIR--DGTIVLLTFD 132 (261)
T ss_dssp EEEEESCGGGCS-----------S-HHHHHHHHHHHBC--SSCEEEEEEC
T ss_pred EEEEcchHhhcc-----------C-HHHHHHHHHHHhC--CcEEEEEEcC
Confidence 999875533321 1 1235666666665 4445565544
No 230
>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}
Probab=87.89 E-value=1.7 Score=42.25 Aligned_cols=146 Identities=12% Similarity=0.024 Sum_probs=83.9
Q ss_pred CCcceecccccccHHHHHHHhc-CCCccEEEEcCchhHHHHHHHhcCC---CcccccchHHHHHHhhcccccccCcCC-C
Q psy12304 116 TPLKCLDLFSGCGGLMEGLCQA-GVAKPCWSVELERSEAASYDANFQE---CSVIQDDCNLVLKSLLKGHTQHKGVSL-P 190 (620)
Q Consensus 116 ~~l~~~dLFsG~Gg~s~Gl~~a-G~~~~~~a~e~d~~a~~ty~~N~p~---~~~~~~di~~~~~~~~~~~~~~~~~~~-p 190 (620)
.-.+++||-||.|.++.-+... |-.-.++|+|+++...+..+.+..+ ...+.+|.... ... .
T Consensus 77 pG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p-------------~~~~~ 143 (233)
T 4df3_A 77 EGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFP-------------EKYRH 143 (233)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTTCG-------------GGGTT
T ss_pred CCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccCc-------------ccccc
Confidence 4468999999999999888763 4322589999999999988887643 22333343221 111 1
Q ss_pred CCCccceEEecCCCCccccccccchhhhcccccchHHHHHHHhhhcCCcEE--EEcccccccc-ccchhHHHHHHHHHHc
Q psy12304 191 QKHEVDLIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLSFCDLFQPKYI--ILENVTGLVH-FNKNEILQCIFHCLLK 267 (620)
Q Consensus 191 ~~~~vD~i~gGpPCQ~fS~~~~~~~~~~~d~r~~L~~~~~~~i~~~~P~~~--v~ENV~gl~~-~~~~~~~~~i~~~l~~ 267 (620)
..+.+|+|+...+..+ +. ... +.++...+||.-. +.......-. ......++..++.|.+
T Consensus 144 ~~~~vDvVf~d~~~~~-------------~~-~~~---l~~~~r~LKpGG~lvI~ik~r~~d~~~p~~~~~~~ev~~L~~ 206 (233)
T 4df3_A 144 LVEGVDGLYADVAQPE-------------QA-AIV---VRNARFFLRDGGYMLMAIKARSIDVTTEPSEVYKREIKTLMD 206 (233)
T ss_dssp TCCCEEEEEECCCCTT-------------HH-HHH---HHHHHHHEEEEEEEEEEEECCHHHHHTCCCHHHHHHHHHHHH
T ss_pred ccceEEEEEEeccCCh-------------hH-HHH---HHHHHHhccCCCEEEEEEecccCCCCCChHHHHHHHHHHHHH
Confidence 2357898876554321 10 012 2234456778543 3222222111 1123567788899999
Q ss_pred CCCEEEEEEEecCCCCCcccccEEEEEEe
Q psy12304 268 MNYQVTFDVLQSGNYGVAQSRNRVVILAS 296 (620)
Q Consensus 268 ~GY~v~~~~l~A~~yGvPQ~R~R~fivg~ 296 (620)
.||.+...+ +- .|-.|.-+.++|.
T Consensus 207 ~GF~l~e~i-~L----~pf~~~H~lv~~~ 230 (233)
T 4df3_A 207 GGLEIKDVV-HL----DPFDRDHAMIYAV 230 (233)
T ss_dssp TTCCEEEEE-EC----TTTSTTEEEEEEC
T ss_pred CCCEEEEEE-cc----CCCCCceEEEEEE
Confidence 999875432 22 2334556666664
No 231
>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}
Probab=87.75 E-value=0.42 Score=46.18 Aligned_cols=56 Identities=16% Similarity=0.026 Sum_probs=45.3
Q ss_pred CCcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcC--CCcccccchHHH
Q psy12304 116 TPLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQ--ECSVIQDDCNLV 173 (620)
Q Consensus 116 ~~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p--~~~~~~~di~~~ 173 (620)
...++||+-||.|.++.-|...|. -+.++|+++.+++..+.+.+ +..++.+|+.++
T Consensus 56 ~~~~vLD~GcG~G~~~~~la~~~~--~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~ 113 (245)
T 3ggd_A 56 PELPLIDFACGNGTQTKFLSQFFP--RVIGLDVSKSALEIAAKENTAANISYRLLDGLVP 113 (245)
T ss_dssp TTSCEEEETCTTSHHHHHHHHHSS--CEEEEESCHHHHHHHHHHSCCTTEEEEECCTTCH
T ss_pred CCCeEEEEcCCCCHHHHHHHHhCC--CEEEEECCHHHHHHHHHhCcccCceEEECccccc
Confidence 345799999999999999999886 48899999999999998875 344556666543
No 232
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41
Probab=87.58 E-value=0.84 Score=44.46 Aligned_cols=69 Identities=14% Similarity=0.191 Sum_probs=49.9
Q ss_pred CcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhc-----CCCcccccchHHHHHHhhcccccccCcCCCC
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANF-----QECSVIQDDCNLVLKSLLKGHTQHKGVSLPQ 191 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~-----p~~~~~~~di~~~~~~~~~~~~~~~~~~~p~ 191 (620)
..++||+-||.|.++.-+...+. .+.++|+++..++.-+.+. ++..+..+|+.+ +|.
T Consensus 38 ~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~----------------l~~ 99 (260)
T 1vl5_A 38 NEEVLDVATGGGHVANAFAPFVK--KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQ----------------MPF 99 (260)
T ss_dssp CCEEEEETCTTCHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-C----------------CCS
T ss_pred CCEEEEEeCCCCHHHHHHHHhCC--EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHh----------------CCC
Confidence 45899999999999999998875 5889999999888776653 334444455422 222
Q ss_pred -CCccceEEecCC
Q psy12304 192 -KHEVDLIVAGPP 203 (620)
Q Consensus 192 -~~~vD~i~gGpP 203 (620)
.+.+|+|+...-
T Consensus 100 ~~~~fD~V~~~~~ 112 (260)
T 1vl5_A 100 TDERFHIVTCRIA 112 (260)
T ss_dssp CTTCEEEEEEESC
T ss_pred CCCCEEEEEEhhh
Confidence 357999987644
No 233
>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*
Probab=87.55 E-value=0.43 Score=48.22 Aligned_cols=43 Identities=14% Similarity=0.222 Sum_probs=36.0
Q ss_pred CcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhc
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANF 160 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~ 160 (620)
..++||+.||.|+++.-+...+. ..+.++|+++.+++.-+.+.
T Consensus 35 ~~~VLDlGcG~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~ 77 (313)
T 3bgv_A 35 DITVLDLGCGKGGDLLKWKKGRI-NKLVCTDIADVSVKQCQQRY 77 (313)
T ss_dssp CCEEEEETCTTTTTHHHHHHTTC-SEEEEEESCHHHHHHHHHHH
T ss_pred CCEEEEECCCCcHHHHHHHhcCC-CEEEEEeCCHHHHHHHHHHH
Confidence 45899999999999998887665 46899999999888776654
No 234
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21
Probab=87.31 E-value=0.8 Score=44.35 Aligned_cols=42 Identities=19% Similarity=0.237 Sum_probs=35.2
Q ss_pred CcceecccccccHHHHHHHhc-CCCccEEEEcCchhHHHHHHHhc
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQA-GVAKPCWSVELERSEAASYDANF 160 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~a-G~~~~~~a~e~d~~a~~ty~~N~ 160 (620)
..++||+-||.|.++.-+... |. .+.++|+++.+++.-+.+.
T Consensus 37 ~~~VLDiGcG~G~~~~~la~~~~~--~v~gvD~s~~~l~~a~~~~ 79 (256)
T 1nkv_A 37 GTRILDLGSGSGEMLCTWARDHGI--TGTGIDMSSLFTAQAKRRA 79 (256)
T ss_dssp TCEEEEETCTTCHHHHHHHHHTCC--EEEEEESCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCHHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHH
Confidence 458999999999999888765 65 4789999999988887765
No 235
>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}
Probab=87.14 E-value=0.69 Score=43.68 Aligned_cols=71 Identities=15% Similarity=0.211 Sum_probs=50.7
Q ss_pred CCcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcCCCcccccchHHHHHHhhcccccccCcCCCCCCcc
Q psy12304 116 TPLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQECSVIQDDCNLVLKSLLKGHTQHKGVSLPQKHEV 195 (620)
Q Consensus 116 ~~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p~~~~~~~di~~~~~~~~~~~~~~~~~~~p~~~~v 195 (620)
...++||+.||.|.++.-+...|. .+.++|+++.+++.-+.+.. .+...|+.+. ...++ .+.+
T Consensus 32 ~~~~vLdiG~G~G~~~~~l~~~~~--~~~~~D~~~~~~~~~~~~~~--~~~~~d~~~~------------~~~~~-~~~f 94 (230)
T 3cc8_A 32 EWKEVLDIGCSSGALGAAIKENGT--RVSGIEAFPEAAEQAKEKLD--HVVLGDIETM------------DMPYE-EEQF 94 (230)
T ss_dssp TCSEEEEETCTTSHHHHHHHTTTC--EEEEEESSHHHHHHHHTTSS--EEEESCTTTC------------CCCSC-TTCE
T ss_pred CCCcEEEeCCCCCHHHHHHHhcCC--eEEEEeCCHHHHHHHHHhCC--cEEEcchhhc------------CCCCC-CCcc
Confidence 346899999999999999998874 58899999999988887763 3444554321 01121 2578
Q ss_pred ceEEecCC
Q psy12304 196 DLIVAGPP 203 (620)
Q Consensus 196 D~i~gGpP 203 (620)
|+|+....
T Consensus 95 D~v~~~~~ 102 (230)
T 3cc8_A 95 DCVIFGDV 102 (230)
T ss_dssp EEEEEESC
T ss_pred CEEEECCh
Confidence 99987543
No 236
>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}
Probab=87.10 E-value=0.25 Score=48.31 Aligned_cols=75 Identities=16% Similarity=0.121 Sum_probs=51.0
Q ss_pred cceecccccccHHHHHHHhc---CCCccEEEEcCchhHHHHHHHhc------CCCcccccchHHHHHHhhcccccccCcC
Q psy12304 118 LKCLDLFSGCGGLMEGLCQA---GVAKPCWSVELERSEAASYDANF------QECSVIQDDCNLVLKSLLKGHTQHKGVS 188 (620)
Q Consensus 118 l~~~dLFsG~Gg~s~Gl~~a---G~~~~~~a~e~d~~a~~ty~~N~------p~~~~~~~di~~~~~~~~~~~~~~~~~~ 188 (620)
-++||+.||.|..++-+..+ +. .+.++|+++.+++.-+.|+ +...++.+|..+++.......
T Consensus 62 ~~VLDiG~G~G~~t~~la~~~~~~~--~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~------- 132 (242)
T 3r3h_A 62 KKVLELGTFTGYSALAMSLALPDDG--QVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEG------- 132 (242)
T ss_dssp SEEEEEESCCSHHHHHHHHTSCTTC--EEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHH-------
T ss_pred CEEEEeeCCcCHHHHHHHHhCCCCC--EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhcc-------
Confidence 48999999999999998874 33 5889999987765555443 245667788877654321100
Q ss_pred CCCCCccceEEecCC
Q psy12304 189 LPQKHEVDLIVAGPP 203 (620)
Q Consensus 189 ~p~~~~vD~i~gGpP 203 (620)
..+.+|+|+...+
T Consensus 133 --~~~~fD~V~~d~~ 145 (242)
T 3r3h_A 133 --GEHQFDFIFIDAD 145 (242)
T ss_dssp --CSSCEEEEEEESC
T ss_pred --CCCCEeEEEEcCC
Confidence 0247899987644
No 237
>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}
Probab=86.38 E-value=0.97 Score=43.74 Aligned_cols=76 Identities=14% Similarity=0.095 Sum_probs=52.9
Q ss_pred cceecccccccHHHHHHHhc---CCCccEEEEcCchhHHHHHHHhcC------CCcccccchHHHHHHhhcccccccCcC
Q psy12304 118 LKCLDLFSGCGGLMEGLCQA---GVAKPCWSVELERSEAASYDANFQ------ECSVIQDDCNLVLKSLLKGHTQHKGVS 188 (620)
Q Consensus 118 l~~~dLFsG~Gg~s~Gl~~a---G~~~~~~a~e~d~~a~~ty~~N~p------~~~~~~~di~~~~~~~~~~~~~~~~~~ 188 (620)
-++||+.||.|+.++-+..+ +. .+.++|+++..++.-+.|+. ...++.+|..+++...... .
T Consensus 72 ~~VLeiG~G~G~~~~~la~~~~~~~--~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~-------~ 142 (237)
T 3c3y_A 72 KKTIEVGVFTGYSLLLTALSIPDDG--KITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQG-------Q 142 (237)
T ss_dssp CEEEEECCTTSHHHHHHHHHSCTTC--EEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHS-------T
T ss_pred CEEEEeCCCCCHHHHHHHHhCCCCC--EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhc-------c
Confidence 48999999999999888775 43 58899999999988887763 2345667776654432110 0
Q ss_pred CCCCCccceEEecCC
Q psy12304 189 LPQKHEVDLIVAGPP 203 (620)
Q Consensus 189 ~p~~~~vD~i~gGpP 203 (620)
. ..+.+|+|+...+
T Consensus 143 ~-~~~~fD~I~~d~~ 156 (237)
T 3c3y_A 143 E-SEGSYDFGFVDAD 156 (237)
T ss_dssp T-CTTCEEEEEECSC
T ss_pred C-CCCCcCEEEECCc
Confidence 0 1247899987644
No 238
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}
Probab=86.35 E-value=1.2 Score=42.99 Aligned_cols=77 Identities=16% Similarity=0.071 Sum_probs=51.6
Q ss_pred cceecccccccHHHHHHHhcCC-CccEEEEcCchhHHHHHHHhcC------CCcccccchHHHHHHhhcccccccCcCCC
Q psy12304 118 LKCLDLFSGCGGLMEGLCQAGV-AKPCWSVELERSEAASYDANFQ------ECSVIQDDCNLVLKSLLKGHTQHKGVSLP 190 (620)
Q Consensus 118 l~~~dLFsG~Gg~s~Gl~~aG~-~~~~~a~e~d~~a~~ty~~N~p------~~~~~~~di~~~~~~~~~~~~~~~~~~~p 190 (620)
-++||+.||.|..++-+..+-- ...+.++|+++.+++.-+.|+. ...++.+|+.+.+..+... .
T Consensus 74 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~---------~ 144 (232)
T 3cbg_A 74 KQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQG---------K 144 (232)
T ss_dssp CEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTS---------S
T ss_pred CEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhc---------C
Confidence 4799999999999998887511 1258899999999888777652 2445667776654332110 0
Q ss_pred CCCccceEEecCC
Q psy12304 191 QKHEVDLIVAGPP 203 (620)
Q Consensus 191 ~~~~vD~i~gGpP 203 (620)
..+.+|+|+...+
T Consensus 145 ~~~~fD~V~~d~~ 157 (232)
T 3cbg_A 145 PLPEFDLIFIDAD 157 (232)
T ss_dssp SCCCEEEEEECSC
T ss_pred CCCCcCEEEECCC
Confidence 0146899986644
No 239
>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}
Probab=86.13 E-value=0.21 Score=49.38 Aligned_cols=66 Identities=18% Similarity=0.162 Sum_probs=47.7
Q ss_pred cceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcCCCcccccchHHHHHHhhcccccccCcCCCCCCccce
Q psy12304 118 LKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQECSVIQDDCNLVLKSLLKGHTQHKGVSLPQKHEVDL 197 (620)
Q Consensus 118 l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p~~~~~~~di~~~~~~~~~~~~~~~~~~~p~~~~vD~ 197 (620)
-++||+=||.|.++..|...|. + +.++|+++..++.-+ .+++.....+|..++ .++ .+.+|+
T Consensus 41 ~~vLDvGcGtG~~~~~l~~~~~-~-v~gvD~s~~ml~~a~-~~~~v~~~~~~~e~~--------------~~~-~~sfD~ 102 (257)
T 4hg2_A 41 GDALDCGCGSGQASLGLAEFFE-R-VHAVDPGEAQIRQAL-RHPRVTYAVAPAEDT--------------GLP-PASVDV 102 (257)
T ss_dssp SEEEEESCTTTTTHHHHHTTCS-E-EEEEESCHHHHHTCC-CCTTEEEEECCTTCC--------------CCC-SSCEEE
T ss_pred CCEEEEcCCCCHHHHHHHHhCC-E-EEEEeCcHHhhhhhh-hcCCceeehhhhhhh--------------ccc-CCcccE
Confidence 4799999999999999999886 4 789999998876543 345555555554221 122 458999
Q ss_pred EEec
Q psy12304 198 IVAG 201 (620)
Q Consensus 198 i~gG 201 (620)
|+.+
T Consensus 103 v~~~ 106 (257)
T 4hg2_A 103 AIAA 106 (257)
T ss_dssp EEEC
T ss_pred EEEe
Confidence 9984
No 240
>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33
Probab=86.06 E-value=0.74 Score=45.12 Aligned_cols=69 Identities=10% Similarity=0.222 Sum_probs=51.8
Q ss_pred CCcceecccccccHHHHHHHhc--CCCccEEEEcCchhHHHHHHHhcCCCcccccchHHHHHHhhcccccccCcCCCCCC
Q psy12304 116 TPLKCLDLFSGCGGLMEGLCQA--GVAKPCWSVELERSEAASYDANFQECSVIQDDCNLVLKSLLKGHTQHKGVSLPQKH 193 (620)
Q Consensus 116 ~~l~~~dLFsG~Gg~s~Gl~~a--G~~~~~~a~e~d~~a~~ty~~N~p~~~~~~~di~~~~~~~~~~~~~~~~~~~p~~~ 193 (620)
...++||+-||.|.++.-+... |. .+.++|+++.+++.-+.+.++..+..+|+.++ .+ ..+
T Consensus 85 ~~~~vLdiG~G~G~~~~~l~~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~--------------~~-~~~ 147 (269)
T 1p91_A 85 KATAVLDIGCGEGYYTHAFADALPEI--TTFGLDVSKVAIKAAAKRYPQVTFCVASSHRL--------------PF-SDT 147 (269)
T ss_dssp TCCEEEEETCTTSTTHHHHHHTCTTS--EEEEEESCHHHHHHHHHHCTTSEEEECCTTSC--------------SB-CTT
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCC--eEEEEeCCHHHHHHHHHhCCCcEEEEcchhhC--------------CC-CCC
Confidence 3458999999999999988886 54 48899999999999998887766655555321 11 135
Q ss_pred ccceEEec
Q psy12304 194 EVDLIVAG 201 (620)
Q Consensus 194 ~vD~i~gG 201 (620)
.+|+|+..
T Consensus 148 ~fD~v~~~ 155 (269)
T 1p91_A 148 SMDAIIRI 155 (269)
T ss_dssp CEEEEEEE
T ss_pred ceeEEEEe
Confidence 78999864
No 241
>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*
Probab=85.42 E-value=0.72 Score=44.64 Aligned_cols=43 Identities=23% Similarity=0.061 Sum_probs=38.0
Q ss_pred cceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhc
Q psy12304 118 LKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANF 160 (620)
Q Consensus 118 l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~ 160 (620)
-+++|+.||.|-+++.+...|-...++|+|+++.|++.-+.|.
T Consensus 17 ~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~ 59 (225)
T 3kr9_A 17 AILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNV 59 (225)
T ss_dssp EEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH
Confidence 5799999999999999999885346899999999999988884
No 242
>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}
Probab=84.95 E-value=0.78 Score=45.00 Aligned_cols=43 Identities=14% Similarity=-0.099 Sum_probs=38.1
Q ss_pred cceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhc
Q psy12304 118 LKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANF 160 (620)
Q Consensus 118 l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~ 160 (620)
-+++|+.||.|-+++.+...|-...++|+|+++.|++.-+.|.
T Consensus 23 ~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~ 65 (244)
T 3gnl_A 23 ERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQV 65 (244)
T ss_dssp EEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHH
T ss_pred CEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH
Confidence 5799999999999999999885346899999999999988884
No 243
>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*
Probab=84.69 E-value=0.98 Score=44.60 Aligned_cols=42 Identities=7% Similarity=0.033 Sum_probs=34.2
Q ss_pred CcceecccccccHHHHHHHhc----CCCccEEEEcCchhHHHHHHHhc
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQA----GVAKPCWSVELERSEAASYDANF 160 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~a----G~~~~~~a~e~d~~a~~ty~~N~ 160 (620)
.-++|||-||.|.+++-+.+. |+ -+.++|+++..++.-+.+.
T Consensus 71 ~~~vLDlGcGtG~~~~~la~~~~~~~~--~v~gvD~s~~ml~~A~~~~ 116 (261)
T 4gek_A 71 GTQVYDLGCSLGAATLSVRRNIHHDNC--KIIAIDNSPAMIERCRRHI 116 (261)
T ss_dssp TCEEEEETCTTTHHHHHHHHTCCSSSC--EEEEEESCHHHHHHHHHHH
T ss_pred CCEEEEEeCCCCHHHHHHHHhcCCCCC--EEEEEECCHHHHHHHHHHH
Confidence 357999999999999888764 44 3789999999888777664
No 244
>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}
Probab=84.01 E-value=0.75 Score=46.51 Aligned_cols=43 Identities=14% Similarity=0.121 Sum_probs=34.0
Q ss_pred CcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhc
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANF 160 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~ 160 (620)
..++|||-||.|+...-+...|. ..+.++|+++.+++.-+...
T Consensus 49 ~~~VLDlGCG~G~~l~~~~~~~~-~~v~GiD~S~~~l~~A~~~~ 91 (302)
T 2vdw_A 49 KRKVLAIDFGNGADLEKYFYGEI-ALLVATDPDADAIARGNERY 91 (302)
T ss_dssp CCEEEETTCTTTTTHHHHHHTTC-SEEEEEESCHHHHHHHHHHH
T ss_pred CCeEEEEecCCcHhHHHHHhcCC-CeEEEEECCHHHHHHHHHHH
Confidence 46899999999986666666665 45899999999988766554
No 245
>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*
Probab=83.94 E-value=1.4 Score=44.31 Aligned_cols=42 Identities=19% Similarity=0.281 Sum_probs=36.1
Q ss_pred CcceecccccccHHHHHHHhc-CCCccEEEEcCchhHHHHHHHhc
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQA-GVAKPCWSVELERSEAASYDANF 160 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~a-G~~~~~~a~e~d~~a~~ty~~N~ 160 (620)
..++||+-||.|+++.-+... |. .+.++|+++.+++.-+.+.
T Consensus 91 ~~~vLDiGcG~G~~~~~la~~~~~--~v~gvD~s~~~~~~a~~~~ 133 (318)
T 2fk8_A 91 GMTLLDIGCGWGTTMRRAVERFDV--NVIGLTLSKNQHARCEQVL 133 (318)
T ss_dssp TCEEEEESCTTSHHHHHHHHHHCC--EEEEEESCHHHHHHHHHHH
T ss_pred cCEEEEEcccchHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHH
Confidence 458999999999999888876 86 4889999999988887775
No 246
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18
Probab=83.88 E-value=0.9 Score=45.22 Aligned_cols=43 Identities=23% Similarity=0.244 Sum_probs=35.7
Q ss_pred CCcceecccccccHHHHHHHhc-CCCccEEEEcCchhHHHHHHHhc
Q psy12304 116 TPLKCLDLFSGCGGLMEGLCQA-GVAKPCWSVELERSEAASYDANF 160 (620)
Q Consensus 116 ~~l~~~dLFsG~Gg~s~Gl~~a-G~~~~~~a~e~d~~a~~ty~~N~ 160 (620)
...++||+-||.|.++.-+... |. .+.++|+++.+++.-+.+.
T Consensus 82 ~~~~vLDiGcG~G~~~~~l~~~~~~--~v~gvD~s~~~~~~a~~~~ 125 (297)
T 2o57_A 82 RQAKGLDLGAGYGGAARFLVRKFGV--SIDCLNIAPVQNKRNEEYN 125 (297)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHHCC--EEEEEESCHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCC--EEEEEeCCHHHHHHHHHHH
Confidence 3458999999999999988876 76 4889999999887776654
No 247
>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23
Probab=83.82 E-value=1.8 Score=43.27 Aligned_cols=74 Identities=18% Similarity=0.230 Sum_probs=51.9
Q ss_pred cceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcC--CCcccccchHHHHHHhhcccccccCcCCCCCCcc
Q psy12304 118 LKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQ--ECSVIQDDCNLVLKSLLKGHTQHKGVSLPQKHEV 195 (620)
Q Consensus 118 l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p--~~~~~~~di~~~~~~~~~~~~~~~~~~~p~~~~v 195 (620)
-.++|.-+|.||-+..+.+.+. .++|+|.|+.|++.-+. .. ...++.++..++...+ .. ..+ +.+
T Consensus 24 g~~VD~T~G~GGHS~~il~~~g--~VigiD~Dp~Ai~~A~~-L~~~rv~lv~~~f~~l~~~L-~~------~g~---~~v 90 (285)
T 1wg8_A 24 GVYVDATLGGAGHARGILERGG--RVIGLDQDPEAVARAKG-LHLPGLTVVQGNFRHLKRHL-AA------LGV---ERV 90 (285)
T ss_dssp CEEEETTCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHH-TCCTTEEEEESCGGGHHHHH-HH------TTC---SCE
T ss_pred CEEEEeCCCCcHHHHHHHHCCC--EEEEEeCCHHHHHHHHh-hccCCEEEEECCcchHHHHH-HH------cCC---CCc
Confidence 3799999999999999998764 48999999999987776 53 3445666665542211 10 011 368
Q ss_pred ceEEecCCC
Q psy12304 196 DLIVAGPPC 204 (620)
Q Consensus 196 D~i~gGpPC 204 (620)
|.|...+..
T Consensus 91 DgIL~DLGv 99 (285)
T 1wg8_A 91 DGILADLGV 99 (285)
T ss_dssp EEEEEECSC
T ss_pred CEEEeCCcc
Confidence 999986554
No 248
>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*
Probab=83.31 E-value=1.3 Score=44.35 Aligned_cols=43 Identities=23% Similarity=0.288 Sum_probs=36.6
Q ss_pred CcceecccccccHHHHHHHhc-CCCccEEEEcCchhHHHHHHHhcC
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQA-GVAKPCWSVELERSEAASYDANFQ 161 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~a-G~~~~~~a~e~d~~a~~ty~~N~p 161 (620)
..++||+-||.|+++.-+... |. + +.++|+++.+++.-+.+..
T Consensus 73 ~~~vLDiGcG~G~~~~~la~~~~~-~-v~gvD~s~~~~~~a~~~~~ 116 (302)
T 3hem_A 73 GMTLLDIGCGWGSTMRHAVAEYDV-N-VIGLTLSENQYAHDKAMFD 116 (302)
T ss_dssp TCEEEEETCTTSHHHHHHHHHHCC-E-EEEEECCHHHHHHHHHHHH
T ss_pred cCEEEEeeccCcHHHHHHHHhCCC-E-EEEEECCHHHHHHHHHHHH
Confidence 458999999999999999887 85 4 8899999999888877753
No 249
>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}
Probab=83.07 E-value=1 Score=41.89 Aligned_cols=48 Identities=10% Similarity=0.043 Sum_probs=34.1
Q ss_pred CcceecccccccHHHHHHHhc-C--CCccEEEEcCchhHHHHHHHhcCCCcccccchH
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQA-G--VAKPCWSVELERSEAASYDANFQECSVIQDDCN 171 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~a-G--~~~~~~a~e~d~~a~~ty~~N~p~~~~~~~di~ 171 (620)
..+++||.||.|+++.-+.+. + - ..+.|+|+++.+ ..++..+..+|+.
T Consensus 23 ~~~vLDlGcG~G~~~~~l~~~~~~~~-~~v~gvD~s~~~------~~~~v~~~~~d~~ 73 (201)
T 2plw_A 23 NKIILDIGCYPGSWCQVILERTKNYK-NKIIGIDKKIMD------PIPNVYFIQGEIG 73 (201)
T ss_dssp TEEEEEESCTTCHHHHHHHHHTTTSC-EEEEEEESSCCC------CCTTCEEEECCTT
T ss_pred CCEEEEeCCCCCHHHHHHHHHcCCCC-ceEEEEeCCccC------CCCCceEEEcccc
Confidence 358999999999999988764 3 2 358899999853 2344455555654
No 250
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}
Probab=82.59 E-value=0.9 Score=52.12 Aligned_cols=43 Identities=16% Similarity=0.222 Sum_probs=35.8
Q ss_pred CCcceecccccccHHHHHHHhcCC-CccEEEEcCchhHHHHHHH
Q psy12304 116 TPLKCLDLFSGCGGLMEGLCQAGV-AKPCWSVELERSEAASYDA 158 (620)
Q Consensus 116 ~~l~~~dLFsG~Gg~s~Gl~~aG~-~~~~~a~e~d~~a~~ty~~ 158 (620)
...++||+-||.|.++..|...|- ..-+.++|+++.+++.-+.
T Consensus 721 ~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~ARe 764 (950)
T 3htx_A 721 SASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAK 764 (950)
T ss_dssp CCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHH
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHH
Confidence 345899999999999999998871 1358999999999888766
No 251
>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*
Probab=82.58 E-value=1.5 Score=43.43 Aligned_cols=42 Identities=19% Similarity=0.210 Sum_probs=35.4
Q ss_pred CcceecccccccHHHHHHH-hcCCCccEEEEcCchhHHHHHHHhc
Q psy12304 117 PLKCLDLFSGCGGLMEGLC-QAGVAKPCWSVELERSEAASYDANF 160 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~-~aG~~~~~~a~e~d~~a~~ty~~N~ 160 (620)
..++||+-||.|+++.-+. ..|. .+.++|+++..++.-+.+.
T Consensus 65 ~~~vLDiGcG~G~~~~~l~~~~~~--~v~gvd~s~~~~~~a~~~~ 107 (287)
T 1kpg_A 65 GMTLLDVGCGWGATMMRAVEKYDV--NVVGLTLSKNQANHVQQLV 107 (287)
T ss_dssp TCEEEEETCTTSHHHHHHHHHHCC--EEEEEESCHHHHHHHHHHH
T ss_pred cCEEEEECCcccHHHHHHHHHcCC--EEEEEECCHHHHHHHHHHH
Confidence 4589999999999998887 5576 5889999999988887764
No 252
>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}
Probab=82.11 E-value=0.19 Score=49.98 Aligned_cols=32 Identities=19% Similarity=0.064 Sum_probs=27.2
Q ss_pred CcceecccccccHHHHHHHhcCCCccEEEEcCchh
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERS 151 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~ 151 (620)
..++|||-||.|+++.-+.+.| .+.|+|+++.
T Consensus 75 g~~VLDlGcGtG~~s~~la~~~---~V~gvD~s~m 106 (265)
T 2oxt_A 75 TGRVVDLGCGRGGWSYYAASRP---HVMDVRAYTL 106 (265)
T ss_dssp CEEEEEESCTTSHHHHHHHTST---TEEEEEEECC
T ss_pred CCEEEEeCcCCCHHHHHHHHcC---cEEEEECchh
Confidence 3589999999999999888773 4889999984
No 253
>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*
Probab=81.82 E-value=1.9 Score=42.12 Aligned_cols=42 Identities=19% Similarity=0.303 Sum_probs=36.3
Q ss_pred CCcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhc
Q psy12304 116 TPLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANF 160 (620)
Q Consensus 116 ~~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~ 160 (620)
.+-+|+||=||.|-|++.+. +- ..++|+|||+.+++..+.|.
T Consensus 105 ~p~~VLDlGCG~gpLal~~~--~~-~~y~a~DId~~~i~~ar~~~ 146 (253)
T 3frh_A 105 TPRRVLDIACGLNPLALYER--GI-ASVWGCDIHQGLGDVITPFA 146 (253)
T ss_dssp CCSEEEEETCTTTHHHHHHT--TC-SEEEEEESBHHHHHHHHHHH
T ss_pred CCCeEEEecCCccHHHHHhc--cC-CeEEEEeCCHHHHHHHHHHH
Confidence 35589999999999999988 43 46999999999999998884
No 254
>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}
Probab=81.67 E-value=1.4 Score=40.99 Aligned_cols=70 Identities=9% Similarity=0.083 Sum_probs=46.3
Q ss_pred CcceecccccccHHH-HHHHhcCCCccEEEEcCchhHHHHHHHhc----CCCcccccchHHHHHHhhcccccccCcCCCC
Q psy12304 117 PLKCLDLFSGCGGLM-EGLCQAGVAKPCWSVELERSEAASYDANF----QECSVIQDDCNLVLKSLLKGHTQHKGVSLPQ 191 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s-~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~----p~~~~~~~di~~~~~~~~~~~~~~~~~~~p~ 191 (620)
..++||+-||.|.++ .-+...|. .+.++|+++.+++.-+.+. ++..+..+|+.++ .+ .
T Consensus 24 ~~~vLDiGcG~G~~~~~~~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~--------------~~-~ 86 (209)
T 2p8j_A 24 DKTVLDCGAGGDLPPLSIFVEDGY--KTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKL--------------PF-K 86 (209)
T ss_dssp CSEEEEESCCSSSCTHHHHHHTTC--EEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTSC--------------CS-C
T ss_pred CCEEEEECCCCCHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHHHhcCCceEEEECchhhC--------------CC-C
Confidence 358999999999864 34455676 4889999999888776653 3444455554321 11 1
Q ss_pred CCccceEEecCC
Q psy12304 192 KHEVDLIVAGPP 203 (620)
Q Consensus 192 ~~~vD~i~gGpP 203 (620)
.+.+|+|+....
T Consensus 87 ~~~fD~v~~~~~ 98 (209)
T 2p8j_A 87 DESMSFVYSYGT 98 (209)
T ss_dssp TTCEEEEEECSC
T ss_pred CCceeEEEEcCh
Confidence 357899987543
No 255
>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}
Probab=81.57 E-value=0.83 Score=44.32 Aligned_cols=45 Identities=22% Similarity=0.332 Sum_probs=37.9
Q ss_pred CcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcCC
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQE 162 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p~ 162 (620)
..++||+-||.|+++.-|.+.|. .-++++|+++.+++.-+.|.+.
T Consensus 38 g~~VLDiGcGtG~~t~~la~~g~-~~V~gvDis~~ml~~a~~~~~~ 82 (232)
T 3opn_A 38 GKTCLDIGSSTGGFTDVMLQNGA-KLVYALDVGTNQLAWKIRSDER 82 (232)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTC-SEEEEECSSCCCCCHHHHTCTT
T ss_pred CCEEEEEccCCCHHHHHHHhcCC-CEEEEEcCCHHHHHHHHHhCcc
Confidence 45899999999999999999886 5799999999988776666554
No 256
>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*
Probab=81.32 E-value=0.27 Score=49.22 Aligned_cols=32 Identities=16% Similarity=-0.030 Sum_probs=27.2
Q ss_pred CcceecccccccHHHHHHHhcCCCccEEEEcCchh
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERS 151 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~ 151 (620)
..++|||-||.|+++.-+.+.| -+.|+|+++.
T Consensus 83 g~~VLDlGcGtG~~s~~la~~~---~V~gVD~s~m 114 (276)
T 2wa2_A 83 KGTVVDLGCGRGSWSYYAASQP---NVREVKAYTL 114 (276)
T ss_dssp CEEEEEESCTTCHHHHHHHTST---TEEEEEEECC
T ss_pred CCEEEEeccCCCHHHHHHHHcC---CEEEEECchh
Confidence 4589999999999999888773 4889999984
No 257
>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}
Probab=81.08 E-value=1.5 Score=41.42 Aligned_cols=44 Identities=16% Similarity=0.064 Sum_probs=37.0
Q ss_pred CcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhc
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANF 160 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~ 160 (620)
.-+++||=||.|.+++.+....-.-.++|+|+|+.+++.-+.|.
T Consensus 50 ~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~ 93 (200)
T 3fzg_A 50 VSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSII 93 (200)
T ss_dssp CSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHH
T ss_pred CCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHH
Confidence 45899999999999999977521126999999999999999886
No 258
>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11
Probab=80.81 E-value=2.5 Score=43.10 Aligned_cols=45 Identities=16% Similarity=0.084 Sum_probs=39.1
Q ss_pred cceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcCCCc
Q psy12304 118 LKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQECS 164 (620)
Q Consensus 118 l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p~~~ 164 (620)
-.|||.|||.|.......+.|. -..++|+++.+++.-+.+.....
T Consensus 254 ~~VlDpF~GsGtt~~aa~~~gr--~~ig~e~~~~~~~~~~~r~~~~~ 298 (323)
T 1boo_A 254 DLVVDIFGGSNTTGLVAERESR--KWISFEMKPEYVAASAFRFLDNN 298 (323)
T ss_dssp CEEEETTCTTCHHHHHHHHTTC--EEEEEESCHHHHHHHHGGGSCSC
T ss_pred CEEEECCCCCCHHHHHHHHcCC--CEEEEeCCHHHHHHHHHHHHhcc
Confidence 4699999999999999999996 47789999999999988876543
No 259
>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*
Probab=80.56 E-value=0.68 Score=45.90 Aligned_cols=44 Identities=14% Similarity=0.090 Sum_probs=38.2
Q ss_pred CcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhc
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANF 160 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~ 160 (620)
+-+++||=||.|=+++.+....-...++|+|+|+.+++.-+.|.
T Consensus 133 p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l 176 (281)
T 3lcv_B 133 PNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEAL 176 (281)
T ss_dssp CSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHH
T ss_pred CceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHH
Confidence 45899999999999999987633367999999999999999886
No 260
>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}
Probab=80.43 E-value=11 Score=34.89 Aligned_cols=124 Identities=15% Similarity=0.166 Sum_probs=71.7
Q ss_pred CcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcCCCcccccchHHHHHHhhcccccccCcCCCCCCccc
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQECSVIQDDCNLVLKSLLKGHTQHKGVSLPQKHEVD 196 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p~~~~~~~di~~~~~~~~~~~~~~~~~~~p~~~~vD 196 (620)
..++||+-||.|.++.-+ +. .+.++|+++. +..+..+|+.++ .+ ..+.+|
T Consensus 68 ~~~vLDiG~G~G~~~~~l---~~--~v~~~D~s~~----------~~~~~~~d~~~~--------------~~-~~~~fD 117 (215)
T 2zfu_A 68 SLVVADFGCGDCRLASSI---RN--PVHCFDLASL----------DPRVTVCDMAQV--------------PL-EDESVD 117 (215)
T ss_dssp TSCEEEETCTTCHHHHHC---CS--CEEEEESSCS----------STTEEESCTTSC--------------SC-CTTCEE
T ss_pred CCeEEEECCcCCHHHHHh---hc--cEEEEeCCCC----------CceEEEeccccC--------------CC-CCCCEe
Confidence 458999999999988766 33 4789999987 233444554321 11 135799
Q ss_pred eEEecCCCCccccccccchhhhcccccchHHHHHHHhhhcCCc--EEEEccccccccccchhHHHHHHHHHHcCCCEEEE
Q psy12304 197 LIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLSFCDLFQPK--YIILENVTGLVHFNKNEILQCIFHCLLKMNYQVTF 274 (620)
Q Consensus 197 ~i~gGpPCQ~fS~~~~~~~~~~~d~r~~L~~~~~~~i~~~~P~--~~v~ENV~gl~~~~~~~~~~~i~~~l~~~GY~v~~ 274 (620)
+|+....-. . .+ ...++.+ +.+.++|. +++.|-...+. ....+...|.+.|+.+..
T Consensus 118 ~v~~~~~l~------~------~~-~~~~l~~---~~~~L~~gG~l~i~~~~~~~~------~~~~~~~~l~~~Gf~~~~ 175 (215)
T 2zfu_A 118 VAVFCLSLM------G------TN-IRDFLEE---ANRVLKPGGLLKVAEVSSRFE------DVRTFLRAVTKLGFKIVS 175 (215)
T ss_dssp EEEEESCCC------S------SC-HHHHHHH---HHHHEEEEEEEEEEECGGGCS------CHHHHHHHHHHTTEEEEE
T ss_pred EEEEehhcc------c------cC-HHHHHHH---HHHhCCCCeEEEEEEcCCCCC------CHHHHHHHHHHCCCEEEE
Confidence 999754321 0 01 1123333 33456775 34445443221 356677888899998765
Q ss_pred EEEecCCCCCcccccEEEEEEecCCC
Q psy12304 275 DVLQSGNYGVAQSRNRVVILASKPGY 300 (620)
Q Consensus 275 ~~l~A~~yGvPQ~R~R~fivg~~~~~ 300 (620)
...... ..+++++.+.+.
T Consensus 176 ~~~~~~--------~~~~~~~~k~~~ 193 (215)
T 2zfu_A 176 KDLTNS--------HFFLFDFQKTGP 193 (215)
T ss_dssp EECCST--------TCEEEEEEECSS
T ss_pred EecCCC--------eEEEEEEEecCc
Confidence 433222 236667776553
No 261
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A
Probab=79.40 E-value=1.8 Score=45.17 Aligned_cols=79 Identities=13% Similarity=0.127 Sum_probs=52.2
Q ss_pred CCcceecccccccHHHHHHHhc-CCCccEEEEcCchhHHHHHHHhc-------------CCCcccccchHHHHHHhhccc
Q psy12304 116 TPLKCLDLFSGCGGLMEGLCQA-GVAKPCWSVELERSEAASYDANF-------------QECSVIQDDCNLVLKSLLKGH 181 (620)
Q Consensus 116 ~~l~~~dLFsG~Gg~s~Gl~~a-G~~~~~~a~e~d~~a~~ty~~N~-------------p~~~~~~~di~~~~~~~~~~~ 181 (620)
...++||+-||.|.++.-+... |-.--+.++|+++.+++.-+.|. ++..++.+|+.++..
T Consensus 83 ~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~------ 156 (383)
T 4fsd_A 83 EGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLAT------ 156 (383)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGG------
T ss_pred CCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhh------
Confidence 4568999999999999888764 11125889999999998888773 355556666643200
Q ss_pred ccccCcCCCCCCccceEEecCC
Q psy12304 182 TQHKGVSLPQKHEVDLIVAGPP 203 (620)
Q Consensus 182 ~~~~~~~~p~~~~vD~i~gGpP 203 (620)
. ....++ .+.+|+|+....
T Consensus 157 ~--~~~~~~-~~~fD~V~~~~~ 175 (383)
T 4fsd_A 157 A--EPEGVP-DSSVDIVISNCV 175 (383)
T ss_dssp C--BSCCCC-TTCEEEEEEESC
T ss_pred c--ccCCCC-CCCEEEEEEccc
Confidence 0 000222 357999997643
No 262
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}
Probab=78.43 E-value=4.2 Score=39.52 Aligned_cols=42 Identities=21% Similarity=0.220 Sum_probs=34.9
Q ss_pred CcceecccccccHHHHHHHhc-CCCccEEEEcCchhHHHHHHHhc
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQA-GVAKPCWSVELERSEAASYDANF 160 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~a-G~~~~~~a~e~d~~a~~ty~~N~ 160 (620)
..++||+-||.|.++.-+... |. -+.++|+++..++.-+.+.
T Consensus 62 ~~~vLDiGcG~G~~~~~l~~~~~~--~v~gvD~s~~~~~~a~~~~ 104 (273)
T 3bus_A 62 GDRVLDVGCGIGKPAVRLATARDV--RVTGISISRPQVNQANARA 104 (273)
T ss_dssp TCEEEEESCTTSHHHHHHHHHSCC--EEEEEESCHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHhcCC--EEEEEeCCHHHHHHHHHHH
Confidence 458999999999999988764 54 5889999999888777664
No 263
>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}
Probab=78.38 E-value=0.93 Score=42.82 Aligned_cols=40 Identities=13% Similarity=0.114 Sum_probs=31.8
Q ss_pred CcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHH
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASY 156 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty 156 (620)
..++||+.||.|.++.-+...+-..-+.++|+++.+++..
T Consensus 28 ~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~ 67 (218)
T 3mq2_A 28 DDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKI 67 (218)
T ss_dssp SEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHH
T ss_pred CCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHH
Confidence 4579999999999999998873113588999999966643
No 264
>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A
Probab=78.16 E-value=1.1 Score=44.27 Aligned_cols=134 Identities=10% Similarity=-0.091 Sum_probs=79.6
Q ss_pred cceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcCC---------CcccccchHHHHHHhhcccccccCcC
Q psy12304 118 LKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQE---------CSVIQDDCNLVLKSLLKGHTQHKGVS 188 (620)
Q Consensus 118 l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p~---------~~~~~~di~~~~~~~~~~~~~~~~~~ 188 (620)
-++||+-||.|+++..+...| .-+.++|+|+..++.-+.+++. ..++.+|.. .
T Consensus 74 ~~VL~iG~G~G~~~~~ll~~~--~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~----------------~ 135 (262)
T 2cmg_A 74 KEVLIVDGFDLELAHQLFKYD--THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLD----------------L 135 (262)
T ss_dssp CEEEEESSCCHHHHHHHTTSS--CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGG----------------S
T ss_pred CEEEEEeCCcCHHHHHHHhCC--CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHH----------------H
Confidence 489999999999998887765 4688999999999887777653 122222321 1
Q ss_pred CCCCCccceEEecCCCCccccccccchhhhcccccchHHHHHHHhhhcCCcEEEEccccccccccchhHHHHHHHHHHcC
Q psy12304 189 LPQKHEVDLIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLSFCDLFQPKYIILENVTGLVHFNKNEILQCIFHCLLKM 268 (620)
Q Consensus 189 ~p~~~~vD~i~gGpPCQ~fS~~~~~~~~~~~d~r~~L~~~~~~~i~~~~P~~~v~ENV~gl~~~~~~~~~~~i~~~l~~~ 268 (620)
.. +.+|+|+...+ ++.. . +-.+.+.++|.-+++=+..... .....+..+.+.+.+.
T Consensus 136 ~~--~~fD~Ii~d~~----------------dp~~-~---~~~~~~~L~pgG~lv~~~~~~~--~~~~~~~~~~~~l~~~ 191 (262)
T 2cmg_A 136 DI--KKYDLIFCLQE----------------PDIH-R---IDGLKRMLKEDGVFISVAKHPL--LEHVSMQNALKNMGGV 191 (262)
T ss_dssp CC--CCEEEEEESSC----------------CCHH-H---HHHHHTTEEEEEEEEEEEECTT--TCHHHHHHHHHHHHTT
T ss_pred HH--hhCCEEEECCC----------------ChHH-H---HHHHHHhcCCCcEEEEEcCCcc--cCHHHHHHHHHHHHHh
Confidence 22 57899997632 1110 1 2244567889876665542221 1223566777777664
Q ss_pred CCEEEEEEEecCCCCCcccccEEEEEEecC
Q psy12304 269 NYQVTFDVLQSGNYGVAQSRNRVVILASKP 298 (620)
Q Consensus 269 GY~v~~~~l~A~~yGvPQ~R~R~fivg~~~ 298 (620)
-=.+... ..-+|-.-.-.|++|++.
T Consensus 192 F~~~~~~-----~~~vP~~g~~~~~~as~~ 216 (262)
T 2cmg_A 192 FSVAMPF-----VAPLRILSNKGYIYASFK 216 (262)
T ss_dssp CSEEEEE-----CCTTCTTCCEEEEEEESS
T ss_pred CCceEEE-----EEccCCCcccEEEEeeCC
Confidence 2222211 112444445667777764
No 265
>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*
Probab=77.63 E-value=20 Score=35.74 Aligned_cols=118 Identities=10% Similarity=0.067 Sum_probs=64.9
Q ss_pred Ccceecccc------cccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcCCCcc-cccchHHHHHHhhcccccccCcCC
Q psy12304 117 PLKCLDLFS------GCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQECSV-IQDDCNLVLKSLLKGHTQHKGVSL 189 (620)
Q Consensus 117 ~l~~~dLFs------G~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p~~~~-~~~di~~~~~~~~~~~~~~~~~~~ 189 (620)
..++|||.| |.|+ ....+..|-.-.+.++|+++. .++..+ +.+|+.++
T Consensus 64 g~~VLDLGcGsg~~~GpGs-~~~a~~~~~~~~V~gvDis~~--------v~~v~~~i~gD~~~~---------------- 118 (290)
T 2xyq_A 64 NMRVIHFGAGSDKGVAPGT-AVLRQWLPTGTLLVDSDLNDF--------VSDADSTLIGDCATV---------------- 118 (290)
T ss_dssp TCEEEEESCCCTTSBCHHH-HHHHHHSCTTCEEEEEESSCC--------BCSSSEEEESCGGGC----------------
T ss_pred CCEEEEeCCCCCCCCCcHH-HHHHHHcCCCCEEEEEECCCC--------CCCCEEEEECccccC----------------
Confidence 458999999 5577 555555552125889999998 245666 77777432
Q ss_pred CCCCccceEEecCCCCccccccccchhhhcccc-cchHHHHHH-HhhhcCCcEEEEccccccccccchhHHHHHHHHHHc
Q psy12304 190 PQKHEVDLIVAGPPCQGFSQLNRARELEKSKLK-NGLVFTFLS-FCDLFQPKYIILENVTGLVHFNKNEILQCIFHCLLK 267 (620)
Q Consensus 190 p~~~~vD~i~gGpPCQ~fS~~~~~~~~~~~d~r-~~L~~~~~~-~i~~~~P~~~v~ENV~gl~~~~~~~~~~~i~~~l~~ 267 (620)
+..+.+|+|+..+++.. + +.. . .+..+ ..++...++ +.+.++|.-.++=-+... ...+.+...|.+
T Consensus 119 ~~~~~fD~Vvsn~~~~~-~--g~~-~--~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~------~~~~~l~~~l~~ 186 (290)
T 2xyq_A 119 HTANKWDLIISDMYDPR-T--KHV-T--KENDSKEGFFTYLCGFIKQKLALGGSIAVKITEH------SWNADLYKLMGH 186 (290)
T ss_dssp CCSSCEEEEEECCCCCC------C-C--SCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSS------SCCHHHHHHHTT
T ss_pred CccCcccEEEEcCCccc-c--ccc-c--ccccchHHHHHHHHHHHHHhcCCCcEEEEEEecc------CCHHHHHHHHHH
Confidence 12257999998765332 1 110 0 11111 234444444 345678865443212111 113466777777
Q ss_pred CCCE
Q psy12304 268 MNYQ 271 (620)
Q Consensus 268 ~GY~ 271 (620)
.|+.
T Consensus 187 ~GF~ 190 (290)
T 2xyq_A 187 FSWW 190 (290)
T ss_dssp EEEE
T ss_pred cCCc
Confidence 7775
No 266
>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41
Probab=76.59 E-value=1.4 Score=41.78 Aligned_cols=63 Identities=14% Similarity=0.110 Sum_probs=45.1
Q ss_pred CcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcCCCcccccchHHHHHHhhcccccccCcCCCCCCccc
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQECSVIQDDCNLVLKSLLKGHTQHKGVSLPQKHEVD 196 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p~~~~~~~di~~~~~~~~~~~~~~~~~~~p~~~~vD 196 (620)
..++||+-||.|.++..+... .++|+++.+++..+.+ +..++.+|+.++ .+ ..+.+|
T Consensus 48 ~~~vLDiG~G~G~~~~~l~~~------~~vD~s~~~~~~a~~~--~~~~~~~d~~~~--------------~~-~~~~fD 104 (219)
T 1vlm_A 48 EGRGVEIGVGTGRFAVPLKIK------IGVEPSERMAEIARKR--GVFVLKGTAENL--------------PL-KDESFD 104 (219)
T ss_dssp SSCEEEETCTTSTTHHHHTCC------EEEESCHHHHHHHHHT--TCEEEECBTTBC--------------CS-CTTCEE
T ss_pred CCcEEEeCCCCCHHHHHHHHH------hccCCCHHHHHHHHhc--CCEEEEcccccC--------------CC-CCCCee
Confidence 357999999999998877543 8999999999988887 444555554321 11 134789
Q ss_pred eEEecC
Q psy12304 197 LIVAGP 202 (620)
Q Consensus 197 ~i~gGp 202 (620)
+|+...
T Consensus 105 ~v~~~~ 110 (219)
T 1vlm_A 105 FALMVT 110 (219)
T ss_dssp EEEEES
T ss_pred EEEEcc
Confidence 998754
No 267
>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}
Probab=75.16 E-value=3 Score=40.03 Aligned_cols=58 Identities=5% Similarity=-0.085 Sum_probs=43.2
Q ss_pred CcceecccccccHHHHHHHhcC--CCccEEEEcCchhHHHHHHHhcC------CCcccccchHHHHH
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQAG--VAKPCWSVELERSEAASYDANFQ------ECSVIQDDCNLVLK 175 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~aG--~~~~~~a~e~d~~a~~ty~~N~p------~~~~~~~di~~~~~ 175 (620)
..++||+.||.|.++.-+.... . ..+.++|+++.+++.-+.|+. ...++.+|+.+.+.
T Consensus 61 ~~~VLdiG~G~G~~~~~la~~~~~~-~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~ 126 (239)
T 2hnk_A 61 AKRIIEIGTFTGYSSLCFASALPED-GKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQ 126 (239)
T ss_dssp CSEEEEECCTTCHHHHHHHHHSCTT-CEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHH
T ss_pred cCEEEEEeCCCCHHHHHHHHhCCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHH
Confidence 3479999999999999888762 2 358899999999888777742 14456677766543
No 268
>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*
Probab=73.21 E-value=13 Score=38.55 Aligned_cols=142 Identities=12% Similarity=0.056 Sum_probs=82.2
Q ss_pred CCcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcCCCcccccchHHHHHHhhcccccccCcCCCCCCcc
Q psy12304 116 TPLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQECSVIQDDCNLVLKSLLKGHTQHKGVSLPQKHEV 195 (620)
Q Consensus 116 ~~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p~~~~~~~di~~~~~~~~~~~~~~~~~~~p~~~~v 195 (620)
.-.+++||-|+.||++.=+.+-|. .|+|||+-+-+- -....|+..++.+|...+ .|..+.+
T Consensus 211 ~G~~vlDLGAaPGGWT~~l~~rg~--~V~aVD~~~l~~--~l~~~~~V~~~~~d~~~~---------------~~~~~~~ 271 (375)
T 4auk_A 211 NGMWAVDLGACPGGWTYQLVKRNM--WVYSVDNGPMAQ--SLMDTGQVTWLREDGFKF---------------RPTRSNI 271 (375)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTC--EEEEECSSCCCH--HHHTTTCEEEECSCTTTC---------------CCCSSCE
T ss_pred CCCEEEEeCcCCCHHHHHHHHCCC--EEEEEEhhhcCh--hhccCCCeEEEeCccccc---------------cCCCCCc
Confidence 356899999999999999988886 489999865432 223456666666664321 2334579
Q ss_pred ceEEecCCCCccccccccchhhhcccccchHHHHHHHhhhcCCcEEEEccccccccccc---hhHHHHHHHHHHcCCCEE
Q psy12304 196 DLIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLSFCDLFQPKYIILENVTGLVHFNK---NEILQCIFHCLLKMNYQV 272 (620)
Q Consensus 196 D~i~gGpPCQ~fS~~~~~~~~~~~d~r~~L~~~~~~~i~~~~P~~~v~ENV~gl~~~~~---~~~~~~i~~~l~~~GY~v 272 (620)
|+|+.---|++ .....-..+++.....+.+|+ |+.-.+.... ......+...|...|+..
T Consensus 272 D~vvsDm~~~p----------------~~~~~l~~~wl~~~~~~~aI~-~lKL~mk~~~~~l~~~~~~i~~~l~~~g~~~ 334 (375)
T 4auk_A 272 SWMVCDMVEKP----------------AKVAALMAQWLVNGWCRETIF-NLKLPMKKRYEEVSHNLAYIQAQLDEHGINA 334 (375)
T ss_dssp EEEEECCSSCH----------------HHHHHHHHHHHHTTSCSEEEE-EEECCSSSHHHHHHHHHHHHHHHHHHTTCCE
T ss_pred CEEEEcCCCCh----------------HHhHHHHHHHHhccccceEEE-EEEecccchHHHHHHHHHHHHHHHHhcCcch
Confidence 99876332211 112233445666666665443 5543222111 123455667777788764
Q ss_pred EEEEEecCCCCCcccccEEEEEEecC
Q psy12304 273 TFDVLQSGNYGVAQSRNRVVILASKP 298 (620)
Q Consensus 273 ~~~~l~A~~yGvPQ~R~R~fivg~~~ 298 (620)
...+ .+ +-++|+=+-++..++
T Consensus 335 ~l~a---kh--L~hdReEiTV~~rk~ 355 (375)
T 4auk_A 335 QIQA---RQ--LYHDREEVTVHVRRI 355 (375)
T ss_dssp EEEE---EC--CTTCSSEEEEEEEEC
T ss_pred hhee---hh--hccCCcEEEEEEEec
Confidence 4332 22 224677666666553
No 269
>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*
Probab=73.15 E-value=3.9 Score=41.15 Aligned_cols=43 Identities=19% Similarity=0.005 Sum_probs=33.0
Q ss_pred CCcceecccccccHHH-HHHHh-cCCCccEEEEcCchhHHHHHHHhc
Q psy12304 116 TPLKCLDLFSGCGGLM-EGLCQ-AGVAKPCWSVELERSEAASYDANF 160 (620)
Q Consensus 116 ~~l~~~dLFsG~Gg~s-~Gl~~-aG~~~~~~a~e~d~~a~~ty~~N~ 160 (620)
..-+|+|+=||.||++ +-+.. .|. .+.++|+++.+++.-+.|.
T Consensus 122 ~g~rVLDIGcG~G~~ta~~lA~~~ga--~V~gIDis~~~l~~Ar~~~ 166 (298)
T 3fpf_A 122 RGERAVFIGGGPLPLTGILLSHVYGM--RVNVVEIEPDIAELSRKVI 166 (298)
T ss_dssp TTCEEEEECCCSSCHHHHHHHHTTCC--EEEEEESSHHHHHHHHHHH
T ss_pred CcCEEEEECCCccHHHHHHHHHccCC--EEEEEECCHHHHHHHHHHH
Confidence 3468999999999876 33333 465 4889999999998877764
No 270
>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}
Probab=71.52 E-value=4 Score=44.63 Aligned_cols=76 Identities=17% Similarity=0.195 Sum_probs=45.8
Q ss_pred cceecccccccHHHHHHHh----cCC---------CccEEEEcCchhHHHHHHHhc-----CCCcccccchHHHHHHhhc
Q psy12304 118 LKCLDLFSGCGGLMEGLCQ----AGV---------AKPCWSVELERSEAASYDANF-----QECSVIQDDCNLVLKSLLK 179 (620)
Q Consensus 118 l~~~dLFsG~Gg~s~Gl~~----aG~---------~~~~~a~e~d~~a~~ty~~N~-----p~~~~~~~di~~~~~~~~~ 179 (620)
-+++|-+||.|||-+.... .+- ....+++|+++.+...-+.|. ....+..+|.-..
T Consensus 219 ~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~~~~~I~~~dtL~~------ 292 (530)
T 3ufb_A 219 ESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLEYPRIDPENSLRF------ 292 (530)
T ss_dssp CCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTCSCCEEECSCTTCS------
T ss_pred CEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCCccccccccccccC------
Confidence 4799999999998766532 110 125899999999888777662 1222333332100
Q ss_pred ccccccCcCCCCCCccceEEecCCC
Q psy12304 180 GHTQHKGVSLPQKHEVDLIVAGPPC 204 (620)
Q Consensus 180 ~~~~~~~~~~p~~~~vD~i~gGpPC 204 (620)
..........+|+|++-||=
T Consensus 293 -----~~~~~~~~~~fD~Il~NPPf 312 (530)
T 3ufb_A 293 -----PLREMGDKDRVDVILTNPPF 312 (530)
T ss_dssp -----CGGGCCGGGCBSEEEECCCS
T ss_pred -----chhhhcccccceEEEecCCC
Confidence 00011112369999999994
No 271
>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}
Probab=70.88 E-value=4.8 Score=39.18 Aligned_cols=44 Identities=16% Similarity=0.173 Sum_probs=33.0
Q ss_pred CcceecccccccHHHHHHHhc-CCCccEEEEcCchh------HHHHHHHhc
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQA-GVAKPCWSVELERS------EAASYDANF 160 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~a-G~~~~~~a~e~d~~------a~~ty~~N~ 160 (620)
..++||+-||.|.++.-+... |-...+.++|+++. +++.-+.+.
T Consensus 44 ~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~ 94 (275)
T 3bkx_A 44 GEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHL 94 (275)
T ss_dssp TCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHH
Confidence 458999999999999988876 43125889999986 555555554
No 272
>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}
Probab=68.88 E-value=4.8 Score=40.01 Aligned_cols=45 Identities=18% Similarity=0.178 Sum_probs=36.7
Q ss_pred CcceecccccccHHHHHHHhc-CCCccEEEEcCchhHHHHHHHhcCC
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQA-GVAKPCWSVELERSEAASYDANFQE 162 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~a-G~~~~~~a~e~d~~a~~ty~~N~p~ 162 (620)
..++||+-||.|.+++.+... +. ..+.++|+++.+++.-+.|...
T Consensus 47 ~~~VLDiGCG~G~~~~~la~~~~~-~~v~gvDis~~~i~~A~~~~~~ 92 (292)
T 3g07_A 47 GRDVLDLGCNVGHLTLSIACKWGP-SRMVGLDIDSRLIHSARQNIRH 92 (292)
T ss_dssp TSEEEEESCTTCHHHHHHHHHTCC-SEEEEEESCHHHHHHHHHTC--
T ss_pred CCcEEEeCCCCCHHHHHHHHHcCC-CEEEEECCCHHHHHHHHHHHHh
Confidence 458999999999999998876 33 3588999999999998888643
No 273
>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31
Probab=67.60 E-value=5.2 Score=42.53 Aligned_cols=40 Identities=18% Similarity=0.174 Sum_probs=33.3
Q ss_pred CCcceecccccccHHHHHHHh-cCCCccEEEEcCchhHHHHH
Q psy12304 116 TPLKCLDLFSGCGGLMEGLCQ-AGVAKPCWSVELERSEAASY 156 (620)
Q Consensus 116 ~~l~~~dLFsG~Gg~s~Gl~~-aG~~~~~~a~e~d~~a~~ty 156 (620)
..-++|||.||.|.+++.+.. .|. ..++++|+++.+++.-
T Consensus 242 ~g~~VLDLGCGsG~la~~LA~~~g~-~~V~GVDis~~~l~~A 282 (433)
T 1u2z_A 242 KGDTFMDLGSGVGNCVVQAALECGC-ALSFGCEIMDDASDLT 282 (433)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHHCC-SEEEEEECCHHHHHHH
T ss_pred CCCEEEEeCCCcCHHHHHHHHHCCC-CEEEEEeCCHHHHHHH
Confidence 345899999999999999887 465 4689999999987665
No 274
>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*
Probab=64.51 E-value=1.2 Score=45.13 Aligned_cols=29 Identities=24% Similarity=0.044 Sum_probs=24.6
Q ss_pred CcceecccccccHHHHHHHhcCCCccEEEEcC
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQAGVAKPCWSVEL 148 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~ 148 (620)
..+||||.||.||++.-+.+.| .+.++|+
T Consensus 83 g~~VLDlGcG~G~~s~~la~~~---~V~gvD~ 111 (305)
T 2p41_A 83 EGKVVDLGCGRGGWSYYCGGLK---NVREVKG 111 (305)
T ss_dssp CEEEEEETCTTSHHHHHHHTST---TEEEEEE
T ss_pred CCEEEEEcCCCCHHHHHHHhcC---CEEEEec
Confidence 3589999999999999888874 3778998
No 275
>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A
Probab=64.27 E-value=3.8 Score=46.13 Aligned_cols=78 Identities=14% Similarity=0.095 Sum_probs=50.8
Q ss_pred CCcceecccccccHHHHH-HH---hcC---------CCccEEEEcCchhHHHHHHHh----cCC-CcccccchHHHHHHh
Q psy12304 116 TPLKCLDLFSGCGGLMEG-LC---QAG---------VAKPCWSVELERSEAASYDAN----FQE-CSVIQDDCNLVLKSL 177 (620)
Q Consensus 116 ~~l~~~dLFsG~Gg~s~G-l~---~aG---------~~~~~~a~e~d~~a~~ty~~N----~p~-~~~~~~di~~~~~~~ 177 (620)
+...|+|+=||-|-|+.- |. .|| ...-++|||.++.|..+.+.. +.+ ..++.+|++++.--+
T Consensus 409 ~~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~Ng~~d~VtVI~gd~eev~lp~ 488 (745)
T 3ua3_A 409 KTVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNVRTWKRRVTIIESDMRSLPGIA 488 (745)
T ss_dssp SEEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHHHTTTTCSEEEESCGGGHHHHH
T ss_pred CCcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHhcCCCCeEEEEeCchhhccccc
Confidence 346799999999999853 22 244 212689999999998776543 333 567778887762100
Q ss_pred hcccccccCcCCCCCCccceEEecCC
Q psy12304 178 LKGHTQHKGVSLPQKHEVDLIVAGPP 203 (620)
Q Consensus 178 ~~~~~~~~~~~~p~~~~vD~i~gGpP 203 (620)
+ .. .++.+|+|+.-.-
T Consensus 489 --~------~~--~~ekVDIIVSElm 504 (745)
T 3ua3_A 489 --K------DR--GFEQPDIIVSELL 504 (745)
T ss_dssp --H------HT--TCCCCSEEEECCC
T ss_pred --c------cC--CCCcccEEEEecc
Confidence 0 01 1358999987655
No 276
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}
Probab=64.00 E-value=8.5 Score=38.68 Aligned_cols=42 Identities=24% Similarity=0.260 Sum_probs=34.1
Q ss_pred CCcceecccccccHHHHHHHhc--CCCccEEEEcCchhHHHHHHHhc
Q psy12304 116 TPLKCLDLFSGCGGLMEGLCQA--GVAKPCWSVELERSEAASYDANF 160 (620)
Q Consensus 116 ~~l~~~dLFsG~Gg~s~Gl~~a--G~~~~~~a~e~d~~a~~ty~~N~ 160 (620)
...+++|+-||.|.++..+... +. -+.++|++ .+++.-+.+.
T Consensus 165 ~~~~vlDvG~G~G~~~~~l~~~~p~~--~~~~~D~~-~~~~~a~~~~ 208 (335)
T 2r3s_A 165 EPLKVLDISASHGLFGIAVAQHNPNA--EIFGVDWA-SVLEVAKENA 208 (335)
T ss_dssp CCSEEEEETCTTCHHHHHHHHHCTTC--EEEEEECH-HHHHHHHHHH
T ss_pred CCCEEEEECCCcCHHHHHHHHHCCCC--eEEEEecH-HHHHHHHHHH
Confidence 3568999999999999988876 54 47899999 8877776664
No 277
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=63.07 E-value=6.6 Score=40.53 Aligned_cols=56 Identities=21% Similarity=0.179 Sum_probs=44.6
Q ss_pred CcceecccccccHHHHHHHhc-CCCccEEEEcCchhHHHHHHHhc--CCCcccccchHHH
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQA-GVAKPCWSVELERSEAASYDANF--QECSVIQDDCNLV 173 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~a-G~~~~~~a~e~d~~a~~ty~~N~--p~~~~~~~di~~~ 173 (620)
.-.|||+..|.|.|+..|.+. +. +-+.|+|+|+.-+..++..+ ++..++.+|+-++
T Consensus 59 ~~~VlEIGPG~G~LT~~Ll~~~~~-~~vvavE~D~~l~~~L~~~~~~~~l~ii~~D~l~~ 117 (353)
T 1i4w_A 59 ELKVLDLYPGVGIQSAIFYNKYCP-RQYSLLEKRSSLYKFLNAKFEGSPLQILKRDPYDW 117 (353)
T ss_dssp TCEEEEESCTTCHHHHHHHHHHCC-SEEEEECCCHHHHHHHHHHTTTSSCEEECSCTTCH
T ss_pred CCEEEEECCCCCHHHHHHHhhCCC-CEEEEEecCHHHHHHHHHhccCCCEEEEECCccch
Confidence 468999999999999999985 23 34889999999998887753 4567788887543
No 278
>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15
Probab=62.46 E-value=2.6 Score=41.30 Aligned_cols=44 Identities=7% Similarity=-0.100 Sum_probs=36.6
Q ss_pred CCcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhc
Q psy12304 116 TPLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANF 160 (620)
Q Consensus 116 ~~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~ 160 (620)
...++|||=||.|.++.-+...|+ ..+.|+|+++.+++..+.+.
T Consensus 55 ~g~~vLDiGCG~G~~~~~~~~~~~-~~v~g~D~s~~~l~~a~~~~ 98 (263)
T 2a14_A 55 QGDTLIDIGSGPTIYQVLAACDSF-QDITLSDFTDRNREELEKWL 98 (263)
T ss_dssp CEEEEEESSCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHHHHH
T ss_pred CCceEEEeCCCccHHHHHHHHhhh-cceeeccccHHHHHHHHHHH
Confidence 346899999999988877777787 66899999999999877653
No 279
>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*
Probab=61.26 E-value=1.8 Score=41.95 Aligned_cols=54 Identities=15% Similarity=0.230 Sum_probs=36.7
Q ss_pred cceecccccccHHHHHHHhc----CCCccEEEEcCchhHHHHHHHhcCCCcccccchH
Q psy12304 118 LKCLDLFSGCGGLMEGLCQA----GVAKPCWSVELERSEAASYDANFQECSVIQDDCN 171 (620)
Q Consensus 118 l~~~dLFsG~Gg~s~Gl~~a----G~~~~~~a~e~d~~a~~ty~~N~p~~~~~~~di~ 171 (620)
-++||+-||.|+.+.-|... +-...++++|+++.+++.-+...++..++.+|+.
T Consensus 83 ~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~~~~~v~~~~gD~~ 140 (236)
T 2bm8_A 83 RTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCS 140 (236)
T ss_dssp SEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSS
T ss_pred CEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhccCCceEEEECcch
Confidence 47999999999999988775 2112588999999875543322234455555653
No 280
>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}
Probab=60.71 E-value=5.2 Score=36.59 Aligned_cols=50 Identities=18% Similarity=0.120 Sum_probs=35.4
Q ss_pred CcceecccccccHHHHHHHhc-CCC--------ccEEEEcCchhHHHHHHHhcCCCccc-ccchHH
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQA-GVA--------KPCWSVELERSEAASYDANFQECSVI-QDDCNL 172 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~a-G~~--------~~~~a~e~d~~a~~ty~~N~p~~~~~-~~di~~ 172 (620)
..++|||.||.|+++..+... |.. ..++++|+++.+ ..++...+ .+|+..
T Consensus 23 ~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~------~~~~~~~~~~~d~~~ 82 (196)
T 2nyu_A 23 GLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF------PLEGATFLCPADVTD 82 (196)
T ss_dssp TCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC------CCTTCEEECSCCTTS
T ss_pred CCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc------cCCCCeEEEeccCCC
Confidence 358999999999999998875 421 248899999853 23445556 666543
No 281
>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=60.22 E-value=6.4 Score=37.78 Aligned_cols=71 Identities=14% Similarity=0.089 Sum_probs=50.0
Q ss_pred CcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcCC----CcccccchHHHHHHhhcccccccCcCCCCC
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQE----CSVIQDDCNLVLKSLLKGHTQHKGVSLPQK 192 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p~----~~~~~~di~~~~~~~~~~~~~~~~~~~p~~ 192 (620)
..+|||+-||.|..+.-+...+. .-+.++|+++..++.-+.+... ..++.+|..+++. .++ .
T Consensus 61 G~rVLdiG~G~G~~~~~~~~~~~-~~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~------------~~~-~ 126 (236)
T 3orh_A 61 GGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAP------------TLP-D 126 (236)
T ss_dssp CEEEEEECCTTSHHHHHHTTSCE-EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGG------------GSC-T
T ss_pred CCeEEEECCCccHHHHHHHHhCC-cEEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhcc------------ccc-c
Confidence 35899999999999988877664 4578999999999888877543 2344566655421 122 2
Q ss_pred CccceEEec
Q psy12304 193 HEVDLIVAG 201 (620)
Q Consensus 193 ~~vD~i~gG 201 (620)
+.+|.|+.-
T Consensus 127 ~~FD~i~~D 135 (236)
T 3orh_A 127 GHFDGILYD 135 (236)
T ss_dssp TCEEEEEEC
T ss_pred cCCceEEEe
Confidence 468888754
No 282
>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A
Probab=60.16 E-value=7.5 Score=39.45 Aligned_cols=42 Identities=19% Similarity=0.148 Sum_probs=34.8
Q ss_pred cceecccccccHHHHHHHhcCCCccEEEEcCch---hHHHHHHHhcC
Q psy12304 118 LKCLDLFSGCGGLMEGLCQAGVAKPCWSVELER---SEAASYDANFQ 161 (620)
Q Consensus 118 l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~---~a~~ty~~N~p 161 (620)
-.|||.|||.|.......+.|. + ..++|+++ ..++.-+.+..
T Consensus 244 ~~vlDpF~GsGtt~~aa~~~~r-~-~ig~e~~~~~~~~~~~~~~Rl~ 288 (319)
T 1eg2_A 244 STVLDFFAGSGVTARVAIQEGR-N-SICTDAAPVFKEYYQKQLTFLQ 288 (319)
T ss_dssp CEEEETTCTTCHHHHHHHHHTC-E-EEEEESSTHHHHHHHHHHHHC-
T ss_pred CEEEecCCCCCHHHHHHHHcCC-c-EEEEECCccHHHHHHHHHHHHH
Confidence 3699999999999999999996 4 77999999 77777666653
No 283
>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*
Probab=59.68 E-value=2.7 Score=46.96 Aligned_cols=69 Identities=19% Similarity=0.284 Sum_probs=44.5
Q ss_pred CCcceecccccccHHHHHHHhcCC---Cc-cEEEEcCchhHHHHHHH---h-cCC-CcccccchHHHHHHhhcccccccC
Q psy12304 116 TPLKCLDLFSGCGGLMEGLCQAGV---AK-PCWSVELERSEAASYDA---N-FQE-CSVIQDDCNLVLKSLLKGHTQHKG 186 (620)
Q Consensus 116 ~~l~~~dLFsG~Gg~s~Gl~~aG~---~~-~~~a~e~d~~a~~ty~~---N-~p~-~~~~~~di~~~~~~~~~~~~~~~~ 186 (620)
+...|+|+=||.|-|+.-.-+||. .. -++|||.++.|..+.+. | +.+ ..++.+|++++
T Consensus 357 ~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~A~~a~~~v~~N~~~dkVtVI~gd~eev------------- 423 (637)
T 4gqb_A 357 NVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPNAVVTLENWQFEEWGSQVTVVSSDMREW------------- 423 (637)
T ss_dssp CEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHHHHHHHHHHHHHTTGGGEEEEESCTTTC-------------
T ss_pred CCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHHHHhccCCCeEEEEeCcceec-------------
Confidence 445799999999999655555443 12 38999999998877643 2 111 23455555432
Q ss_pred cCCCCCCccceEEe
Q psy12304 187 VSLPQKHEVDLIVA 200 (620)
Q Consensus 187 ~~~p~~~~vD~i~g 200 (620)
.+| .+||||+-
T Consensus 424 -~LP--EKVDIIVS 434 (637)
T 4gqb_A 424 -VAP--EKADIIVS 434 (637)
T ss_dssp -CCS--SCEEEEEC
T ss_pred -cCC--cccCEEEE
Confidence 344 58999974
No 284
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*
Probab=57.29 E-value=9.5 Score=39.08 Aligned_cols=44 Identities=23% Similarity=0.245 Sum_probs=34.6
Q ss_pred CCcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhc
Q psy12304 116 TPLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANF 160 (620)
Q Consensus 116 ~~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~ 160 (620)
...+++|+-||.|.++..+...+-.-.+.++|+ +.+++.-+.|.
T Consensus 182 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~ 225 (374)
T 1qzz_A 182 AVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRF 225 (374)
T ss_dssp TCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHH
T ss_pred CCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHH
Confidence 346899999999999999988642124788999 88888777764
No 285
>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=57.23 E-value=7.9 Score=34.70 Aligned_cols=36 Identities=8% Similarity=0.053 Sum_probs=31.5
Q ss_pred Ccceeccccccc-HHHHHHHh-cCCCccEEEEcCchhHHH
Q psy12304 117 PLKCLDLFSGCG-GLMEGLCQ-AGVAKPCWSVELERSEAA 154 (620)
Q Consensus 117 ~l~~~dLFsG~G-g~s~Gl~~-aG~~~~~~a~e~d~~a~~ 154 (620)
+-+++|+=||-| -.+.-|.. .|+ + +.|+|+++.|+.
T Consensus 36 ~~rVlEVG~G~g~~vA~~La~~~g~-~-V~atDInp~Av~ 73 (153)
T 2k4m_A 36 GTRVVEVGAGRFLYVSDYIRKHSKV-D-LVLTDIKPSHGG 73 (153)
T ss_dssp SSEEEEETCTTCCHHHHHHHHHSCC-E-EEEECSSCSSTT
T ss_pred CCcEEEEccCCChHHHHHHHHhCCC-e-EEEEECCccccc
Confidence 458999999999 58999986 998 5 889999999987
No 286
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Probab=57.10 E-value=9.5 Score=38.89 Aligned_cols=44 Identities=14% Similarity=0.205 Sum_probs=34.0
Q ss_pred CCcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhc
Q psy12304 116 TPLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANF 160 (620)
Q Consensus 116 ~~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~ 160 (620)
...+++|+-||.|.++..+...+-.-.+.++|+ +.+++.-+.|.
T Consensus 183 ~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~ 226 (360)
T 1tw3_A 183 NVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYL 226 (360)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHH
T ss_pred cCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHH
Confidence 346899999999999999988753124678888 88887777664
No 287
>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*
Probab=56.09 E-value=8 Score=36.87 Aligned_cols=36 Identities=14% Similarity=0.063 Sum_probs=27.4
Q ss_pred cceecccccccHHHHHHHhcCCCccEEEEcCchhHH
Q psy12304 118 LKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEA 153 (620)
Q Consensus 118 l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~ 153 (620)
-++||+-||.|.++.-+....-...+.++|+++.+.
T Consensus 26 ~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~m 61 (225)
T 3p2e_A 26 RVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENL 61 (225)
T ss_dssp EEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGG
T ss_pred CEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHH
Confidence 479999999999999887432212588999995554
No 288
>2dpm_A M.dpnii 1, protein (adenine-specific methyltransferase dpnii 1); DNA adenine methyltransferase, methylase; HET: SAM; 1.80A {Streptococcus pneumoniae} SCOP: c.66.1.28
Probab=50.27 E-value=11 Score=37.58 Aligned_cols=37 Identities=19% Similarity=0.289 Sum_probs=31.2
Q ss_pred ceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHh
Q psy12304 119 KCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDAN 159 (620)
Q Consensus 119 ~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N 159 (620)
+.+|.|+|+|+..+.+.. ..++.+|+|++-+..|+.-
T Consensus 38 ~yvEpF~GggaV~~~~~~----~~~i~ND~n~~Lin~y~~i 74 (284)
T 2dpm_A 38 RYFEPFVGGGALFFDLAP----KDAVINDFNAELINCYQQI 74 (284)
T ss_dssp CEEETTCTTCHHHHHHCC----SEEEEEESCHHHHHHHHHH
T ss_pred EEEeecCCccHHHHhhhc----cceeeeecchHHHHHHHHH
Confidence 799999999999887742 4688999999999999754
No 289
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}
Probab=48.77 E-value=18 Score=36.24 Aligned_cols=40 Identities=18% Similarity=0.192 Sum_probs=32.7
Q ss_pred cceecccccccHHHHHHHhc--CCCccEEEEcCchhHHHHHHHhc
Q psy12304 118 LKCLDLFSGCGGLMEGLCQA--GVAKPCWSVELERSEAASYDANF 160 (620)
Q Consensus 118 l~~~dLFsG~Gg~s~Gl~~a--G~~~~~~a~e~d~~a~~ty~~N~ 160 (620)
.+++|+-||.|.++..+... +. .+.++|+ +.+++.-+.+.
T Consensus 169 ~~vlDvG~G~G~~~~~l~~~~p~~--~~~~~D~-~~~~~~a~~~~ 210 (334)
T 2ip2_A 169 RSFVDVGGGSGELTKAILQAEPSA--RGVMLDR-EGSLGVARDNL 210 (334)
T ss_dssp CEEEEETCTTCHHHHHHHHHCTTC--EEEEEEC-TTCTHHHHHHT
T ss_pred CEEEEeCCCchHHHHHHHHHCCCC--EEEEeCc-HHHHHHHHHHH
Confidence 68999999999999998875 43 4789999 88777776664
No 290
>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*
Probab=48.32 E-value=2.5e+02 Score=28.96 Aligned_cols=156 Identities=17% Similarity=0.134 Sum_probs=93.8
Q ss_pred cceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcCC-------------CcccccchHHHHHHhhcccccc
Q psy12304 118 LKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQE-------------CSVIQDDCNLVLKSLLKGHTQH 184 (620)
Q Consensus 118 l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p~-------------~~~~~~di~~~~~~~~~~~~~~ 184 (620)
-+||-+=.|.||...-+..-.. +-+..||||+.-++.-+..+|. ..++.+|....+++...
T Consensus 207 krVLIIGgGdG~~~revlkh~~-~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~----- 280 (381)
T 3c6k_A 207 KDVLILGGGDGGILCEIVKLKP-KMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAK----- 280 (381)
T ss_dssp CEEEEEECTTCHHHHHHHTTCC-SEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHH-----
T ss_pred CeEEEECCCcHHHHHHHHhcCC-ceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhh-----
Confidence 3788888888887776666555 6688999999999988877653 24556787777654321
Q ss_pred cCcCCCCCCccceEEecCCCCccccccccchhhhcccccchH-HHHHHHh-hhcCCcEEEEccccccccccchhHHHHHH
Q psy12304 185 KGVSLPQKHEVDLIVAGPPCQGFSQLNRARELEKSKLKNGLV-FTFLSFC-DLFQPKYIILENVTGLVHFNKNEILQCIF 262 (620)
Q Consensus 185 ~~~~~p~~~~vD~i~gGpPCQ~fS~~~~~~~~~~~d~r~~L~-~~~~~~i-~~~~P~~~v~ENV~gl~~~~~~~~~~~i~ 262 (620)
..+.+|+|+.-.+=.+.|.... ..-..|+ .+|++.+ +.++|.-+++-+..... . .+.+..+.
T Consensus 281 ------~~~~yDvIIvDl~D~~~s~~p~-------g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~~s~~-~--~~~~~~i~ 344 (381)
T 3c6k_A 281 ------EGREFDYVINDLTAVPISTSPE-------EDSTWEFLRLILDLSMKVLKQDGKYFTQGNCVN-L--TEALSLYE 344 (381)
T ss_dssp ------HTCCEEEEEEECCSSCCCCC-----------CHHHHHHHHHHHHHHTEEEEEEEEEEEEETT-C--HHHHHHHH
T ss_pred ------ccCceeEEEECCCCCcccCccc-------CcchHHHHHHHHHHHHHhcCCCCEEEEecCCCc-c--hhHHHHHH
Confidence 1136899998765333332110 1112343 4555554 45799998876543221 1 24567778
Q ss_pred HHHHcCCCEEEEEEEecCCCCCccc-ccEEEEEEecC
Q psy12304 263 HCLLKMNYQVTFDVLQSGNYGVAQS-RNRVVILASKP 298 (620)
Q Consensus 263 ~~l~~~GY~v~~~~l~A~~yGvPQ~-R~R~fivg~~~ 298 (620)
+.|.+..-.+.+...-+. ||.. =.-.|.+|+++
T Consensus 345 ~tl~~vF~~v~~~~~~~~---VPSy~~~W~F~~aSK~ 378 (381)
T 3c6k_A 345 EQLGRLYCPVEFSKEIVC---VPSYLELWVFYTVWKK 378 (381)
T ss_dssp HHHTTSSSCEEEEEEEEC---CGGGSSCEEEEEEEEC
T ss_pred HHHHHhCCcceEeeEEEE---ecCCCCceeeeEEECC
Confidence 888877555544322221 3332 24678888874
No 291
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Probab=46.94 E-value=33 Score=34.82 Aligned_cols=44 Identities=14% Similarity=0.067 Sum_probs=33.7
Q ss_pred CCcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhc
Q psy12304 116 TPLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANF 160 (620)
Q Consensus 116 ~~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~ 160 (620)
..-+++|+-||.|.++..+....-.--+.++|+ +.+++.-+.|.
T Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~ 233 (359)
T 1x19_A 190 GVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENA 233 (359)
T ss_dssp TCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHH
T ss_pred CCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHH
Confidence 345899999999999999987631114779999 88887777663
No 292
>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*
Probab=43.94 E-value=7 Score=41.11 Aligned_cols=52 Identities=15% Similarity=0.191 Sum_probs=37.8
Q ss_pred CCcceeccccc------ccHHHHHHHhc---CCCccEEEEcCchhHHHHHHHhcCCCcccccchHHH
Q psy12304 116 TPLKCLDLFSG------CGGLMEGLCQA---GVAKPCWSVELERSEAASYDANFQECSVIQDDCNLV 173 (620)
Q Consensus 116 ~~l~~~dLFsG------~Gg~s~Gl~~a---G~~~~~~a~e~d~~a~~ty~~N~p~~~~~~~di~~~ 173 (620)
+..++|||=|| .||.++-+... +. .+.++|+++.+. .+.++..++.+|+.++
T Consensus 216 ~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a--~V~GVDiSp~m~----~~~~rI~fv~GDa~dl 276 (419)
T 3sso_A 216 QQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRG--QIYGLDIMDKSH----VDELRIRTIQGDQNDA 276 (419)
T ss_dssp SCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTC--EEEEEESSCCGG----GCBTTEEEEECCTTCH
T ss_pred CCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCC--EEEEEECCHHHh----hcCCCcEEEEeccccc
Confidence 45799999999 67888777653 33 488999999863 3455666777887653
No 293
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}
Probab=43.84 E-value=35 Score=34.79 Aligned_cols=45 Identities=16% Similarity=0.088 Sum_probs=34.8
Q ss_pred CcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcCC
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQE 162 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p~ 162 (620)
.-+++|+=||.|.++..+....-.--+.++|+ +..++.-+.+...
T Consensus 180 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~ 224 (363)
T 3dp7_A 180 PKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAG 224 (363)
T ss_dssp CSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTT
T ss_pred CCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHh
Confidence 45899999999999999987432114789999 8888887777643
No 294
>2g1p_A DNA adenine methylase; DAM methylation, GATC recognition, base flipping, bacterial factor, transferase-DNA complex; HET: DNA SAH; 1.89A {Escherichia coli} PDB: 2ore_D*
Probab=43.55 E-value=12 Score=37.14 Aligned_cols=38 Identities=11% Similarity=0.141 Sum_probs=31.0
Q ss_pred cceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHh
Q psy12304 118 LKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDAN 159 (620)
Q Consensus 118 l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N 159 (620)
-+.+|.|+|+|+..+.+. . +.++.+|+|++-+..|+.-
T Consensus 29 ~~yvEpF~Ggg~V~~~~~---~-~~~i~ND~n~~lin~y~~i 66 (278)
T 2g1p_A 29 ECLVEPFVGAGSVFLNTD---F-SRYILADINSDLISLYNIV 66 (278)
T ss_dssp SEEEETTCTTCHHHHTCC---C-SEEEEEESCHHHHHHHHHH
T ss_pred CeEEeeccCccHHHHhhc---c-cceEEEeccHHHHHHHHHH
Confidence 379999999999877553 2 4578999999999988764
No 295
>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*
Probab=40.86 E-value=21 Score=35.20 Aligned_cols=43 Identities=9% Similarity=0.177 Sum_probs=33.6
Q ss_pred CCcceecccccccH----HHHHHHhc-C-----CCccEEEEcCchhHHHHHHHhc
Q psy12304 116 TPLKCLDLFSGCGG----LMEGLCQA-G-----VAKPCWSVELERSEAASYDANF 160 (620)
Q Consensus 116 ~~l~~~dLFsG~Gg----~s~Gl~~a-G-----~~~~~~a~e~d~~a~~ty~~N~ 160 (620)
..++++|+-||.|- +++-|.+. | + -+.|+|+++.+++.-+.+.
T Consensus 105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~--~I~atDis~~~L~~Ar~~~ 157 (274)
T 1af7_A 105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRW--KVFASDIDTEVLEKARSGI 157 (274)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSE--EEEEEESCHHHHHHHHHTE
T ss_pred CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCe--EEEEEECCHHHHHHHHhcC
Confidence 35899999999998 45445443 3 3 4899999999999988774
No 296
>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}
Probab=40.42 E-value=2.6e+02 Score=27.63 Aligned_cols=148 Identities=14% Similarity=0.095 Sum_probs=88.3
Q ss_pred cceecccccccHHHHHHHh-cCCCccEEEEcCchhHHHHHHHhcC----------CCcccccchHHHHHHhhcccccccC
Q psy12304 118 LKCLDLFSGCGGLMEGLCQ-AGVAKPCWSVELERSEAASYDANFQ----------ECSVIQDDCNLVLKSLLKGHTQHKG 186 (620)
Q Consensus 118 l~~~dLFsG~Gg~s~Gl~~-aG~~~~~~a~e~d~~a~~ty~~N~p----------~~~~~~~di~~~~~~~~~~~~~~~~ 186 (620)
-+||-+=.|.||...-+.. .+. +-+..||||+.-++.-+..+| ...++.+|...+++
T Consensus 85 k~VLIiGgGdG~~~revlk~~~v-~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~----------- 152 (294)
T 3o4f_A 85 KHVLIIGGGDGAMLREVTRHKNV-ESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVN----------- 152 (294)
T ss_dssp CEEEEESCTTSHHHHHHHTCTTC-CEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTS-----------
T ss_pred CeEEEECCCchHHHHHHHHcCCc-ceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHh-----------
Confidence 4688888888887766654 455 668899999998887766553 33455556544321
Q ss_pred cCCCCCCccceEEecCCCCccccccccchhhhcccccchH-HHHHHHh-hhcCCcEEEEccccccccccchhHHHHHHHH
Q psy12304 187 VSLPQKHEVDLIVAGPPCQGFSQLNRARELEKSKLKNGLV-FTFLSFC-DLFQPKYIILENVTGLVHFNKNEILQCIFHC 264 (620)
Q Consensus 187 ~~~p~~~~vD~i~gGpPCQ~fS~~~~~~~~~~~d~r~~L~-~~~~~~i-~~~~P~~~v~ENV~gl~~~~~~~~~~~i~~~ 264 (620)
. ....+|+|+.-.+-.. +.+. .|+ .+|.+.+ +.++|.-++.=+...... ....+..+++.
T Consensus 153 -~--~~~~yDvIi~D~~dp~-~~~~------------~L~t~eFy~~~~~~L~p~Gv~v~q~~sp~~--~~~~~~~~~~~ 214 (294)
T 3o4f_A 153 -Q--TSQTFDVIISDCTDPI-GPGE------------SLFTSAFYEGCKRCLNPGGIFVAQNGVCFL--QQEEAIDSHRK 214 (294)
T ss_dssp -C--SSCCEEEEEESCCCCC-CTTC------------CSSCCHHHHHHHHTEEEEEEEEEEEEESSS--CCHHHHHHHHH
T ss_pred -h--ccccCCEEEEeCCCcC-CCch------------hhcCHHHHHHHHHHhCCCCEEEEecCCccc--ChHHHHHHHHH
Confidence 1 1247899998776321 1111 121 2333333 567999998877655432 23456667777
Q ss_pred HHcCCCEEEEEEEecCCCCCcccccEEEEEEecC
Q psy12304 265 LLKMNYQVTFDVLQSGNYGVAQSRNRVVILASKP 298 (620)
Q Consensus 265 l~~~GY~v~~~~l~A~~yGvPQ~R~R~fivg~~~ 298 (620)
|.+..=.|......--.|. .=.-.|++|++.
T Consensus 215 l~~~F~~v~~~~~~vPty~---~g~w~f~~as~~ 245 (294)
T 3o4f_A 215 LSHYFSDVGFYQAAIPTYY---GGIMTFAWATDN 245 (294)
T ss_dssp HHHHCSEEEEEEECCTTSS---SSCEEEEEEESC
T ss_pred HHhhCCceeeeeeeeccCC---CcceeheeEECC
Confidence 7766555555444433331 134678888764
No 297
>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...
Probab=39.52 E-value=13 Score=36.59 Aligned_cols=44 Identities=9% Similarity=-0.107 Sum_probs=32.3
Q ss_pred CcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcC
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQ 161 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p 161 (620)
..++||+-||.|.++.-+...+. .-+.++|+++.+++..+.+..
T Consensus 72 ~~~vLDiGcG~G~~~~l~~~~~~-~~v~gvD~s~~~l~~a~~~~~ 115 (289)
T 2g72_A 72 GRTLIDIGSGPTVYQLLSACSHF-EDITMTDFLEVNRQELGRWLQ 115 (289)
T ss_dssp CSEEEEETCTTCCGGGTTGGGGC-SEEEEECSCHHHHHHHHHHHT
T ss_pred CCeEEEECCCcChHHHHhhccCC-CeEEEeCCCHHHHHHHHHHHh
Confidence 45899999999995443333233 358899999999988777654
No 298
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*
Probab=36.86 E-value=25 Score=36.56 Aligned_cols=42 Identities=17% Similarity=0.115 Sum_probs=36.9
Q ss_pred CCcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHh
Q psy12304 116 TPLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDAN 159 (620)
Q Consensus 116 ~~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N 159 (620)
...++||+-||.|.+..-|...|. .+.++|+++.+++.-+.+
T Consensus 107 ~~~~VLDiGcG~G~~~~~l~~~g~--~v~gvD~s~~~~~~a~~~ 148 (416)
T 4e2x_A 107 PDPFIVEIGCNDGIMLRTIQEAGV--RHLGFEPSSGVAAKAREK 148 (416)
T ss_dssp SSCEEEEETCTTTTTHHHHHHTTC--EEEEECCCHHHHHHHHTT
T ss_pred CCCEEEEecCCCCHHHHHHHHcCC--cEEEECCCHHHHHHHHHc
Confidence 356899999999999999999997 488999999998887766
No 299
>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}
Probab=36.19 E-value=48 Score=33.68 Aligned_cols=70 Identities=17% Similarity=0.152 Sum_probs=43.6
Q ss_pred CCCCcceecccccccHHHH----HHHh--------cCCCccEEEEcCchhHHHHHHHhcCCCcccccchHHHHHHhhccc
Q psy12304 114 LDTPLKCLDLFSGCGGLME----GLCQ--------AGVAKPCWSVELERSEAASYDANFQECSVIQDDCNLVLKSLLKGH 181 (620)
Q Consensus 114 ~~~~l~~~dLFsG~Gg~s~----Gl~~--------aG~~~~~~a~e~d~~a~~ty~~N~p~~~~~~~di~~~~~~~~~~~ 181 (620)
.++++++.=+ |+|.++. ++.. .++ +++..+|.++..++.+...++-... -.|..+++.+
T Consensus 22 ~MkkirvgiI--G~G~ig~~H~~a~~~~~~~~~~~~~~-~lvav~d~~~~~a~~~a~~~g~~~~-y~d~~ell~~----- 92 (393)
T 4fb5_A 22 SMKPLGIGLI--GTGYMGKCHALAWNAVKTVFGDVERP-RLVHLAEANAGLAEARAGEFGFEKA-TADWRALIAD----- 92 (393)
T ss_dssp --CCCEEEEE--CCSHHHHHHHHHHTTHHHHHCSSCCC-EEEEEECC--TTHHHHHHHHTCSEE-ESCHHHHHHC-----
T ss_pred CCCCccEEEE--cCCHHHHHHHHHHHhhhhhhccCCCc-EEEEEECCCHHHHHHHHHHhCCCee-cCCHHHHhcC-----
Confidence 4677887654 6776653 2221 244 7889999999999999888864434 3678777531
Q ss_pred ccccCcCCCCCCccceEEecCC
Q psy12304 182 TQHKGVSLPQKHEVDLIVAGPP 203 (620)
Q Consensus 182 ~~~~~~~~p~~~~vD~i~gGpP 203 (620)
.++|+|+...|
T Consensus 93 -----------~~iDaV~IatP 103 (393)
T 4fb5_A 93 -----------PEVDVVSVTTP 103 (393)
T ss_dssp -----------TTCCEEEECSC
T ss_pred -----------CCCcEEEECCC
Confidence 26887766555
No 300
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*
Probab=34.27 E-value=65 Score=32.81 Aligned_cols=129 Identities=13% Similarity=0.136 Sum_probs=73.2
Q ss_pred CCcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcC------CCcccccchHHHHHHhhcccccccCcCC
Q psy12304 116 TPLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQ------ECSVIQDDCNLVLKSLLKGHTQHKGVSL 189 (620)
Q Consensus 116 ~~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p------~~~~~~~di~~~~~~~~~~~~~~~~~~~ 189 (620)
...+++|+-||.|.++..+....-.-.+.++|+ +..++.-+.+.. ...+..+|+. ..+
T Consensus 202 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~---------------~~~ 265 (369)
T 3gwz_A 202 GAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFF---------------ETI 265 (369)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTT---------------TCC
T ss_pred cCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCC---------------CCC
Confidence 346899999999999999988632114688999 887777776542 2233333431 123
Q ss_pred CCCCccceEEecCCCCccccccccchhhhcccccchHHHHHHHhhhcCC--cEEEEccccccccc---------------
Q psy12304 190 PQKHEVDLIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLSFCDLFQP--KYIILENVTGLVHF--------------- 252 (620)
Q Consensus 190 p~~~~vD~i~gGpPCQ~fS~~~~~~~~~~~d~r~~L~~~~~~~i~~~~P--~~~v~ENV~gl~~~--------------- 252 (620)
| ..+|+|+...-...++.. ....++. ++.+.++| ++++.|.+..-...
T Consensus 266 p--~~~D~v~~~~vlh~~~d~----------~~~~~L~---~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~d~~~~~~~~ 330 (369)
T 3gwz_A 266 P--DGADVYLIKHVLHDWDDD----------DVVRILR---RIATAMKPDSRLLVIDNLIDERPAASTLFVDLLLLVLVG 330 (369)
T ss_dssp C--SSCSEEEEESCGGGSCHH----------HHHHHHH---HHHTTCCTTCEEEEEEEBCCSSCCHHHHHHHHHHHHHHS
T ss_pred C--CCceEEEhhhhhccCCHH----------HHHHHHH---HHHHHcCCCCEEEEEEeccCCCCCCchhHhhHHHHhhcC
Confidence 3 268999876544333211 0012222 23345666 56777766432100
Q ss_pred cchhHHHHHHHHHHcCCCEEEEE
Q psy12304 253 NKNEILQCIFHCLLKMNYQVTFD 275 (620)
Q Consensus 253 ~~~~~~~~i~~~l~~~GY~v~~~ 275 (620)
......+++...|.+.|+.+...
T Consensus 331 g~~~t~~e~~~ll~~aGf~~~~~ 353 (369)
T 3gwz_A 331 GAERSESEFAALLEKSGLRVERS 353 (369)
T ss_dssp CCCBCHHHHHHHHHTTTEEEEEE
T ss_pred CccCCHHHHHHHHHHCCCeEEEE
Confidence 00122455667778888876543
No 301
>1yf3_A DNA adenine methylase; T4DAM, methyltransferase, transferase-DNA complex; HET: DNA SAH; 2.29A {Enterobacteria phage T4} SCOP: c.66.1.28 PDB: 1yfj_A* 1yfl_A* 1q0s_A* 1q0t_A*
Probab=33.94 E-value=12 Score=36.59 Aligned_cols=38 Identities=13% Similarity=0.194 Sum_probs=31.5
Q ss_pred ceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcC
Q psy12304 119 KCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQ 161 (620)
Q Consensus 119 ~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p 161 (620)
+.+|.|+|+|++.+.+. . + .+.+|+|++-+..|+.--.
T Consensus 27 ~yvEpF~GggaV~~~~~---~-~-~viNDin~~li~~~~~i~~ 64 (259)
T 1yf3_A 27 RFVDLFCGGLSVSLNVN---G-P-VLANDIQEPIIEMYKRLIN 64 (259)
T ss_dssp EEEETTCTTCTTGGGSC---S-S-EEEECSCHHHHHHHHHHTT
T ss_pred eEEEecCCccHHHHhcc---c-c-EEEecCChHHHHHHHHHHH
Confidence 79999999999876543 2 5 8899999999999987643
No 302
>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}
Probab=33.64 E-value=35 Score=34.84 Aligned_cols=79 Identities=14% Similarity=0.098 Sum_probs=50.5
Q ss_pred cceecccccccHHHHHHHhc-CCCccEEEEcCchhHHHHHHHhcC--CCcccccchHHHHHHhhcccccccCcCCCCCCc
Q psy12304 118 LKCLDLFSGCGGLMEGLCQA-GVAKPCWSVELERSEAASYDANFQ--ECSVIQDDCNLVLKSLLKGHTQHKGVSLPQKHE 194 (620)
Q Consensus 118 l~~~dLFsG~Gg~s~Gl~~a-G~~~~~~a~e~d~~a~~ty~~N~p--~~~~~~~di~~~~~~~~~~~~~~~~~~~p~~~~ 194 (620)
-.++|.-+|.||-+..+.+. |-.-.++|+|.|+.|++.-+ +.. ...++.++..++.+.+-. ..+. +.
T Consensus 59 giyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL~~~Rv~lv~~nF~~l~~~L~~-------~g~~--~~ 128 (347)
T 3tka_A 59 GIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-TIDDPRFSIIHGPFSALGEYVAE-------RDLI--GK 128 (347)
T ss_dssp CEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-TCCCTTEEEEESCGGGHHHHHHH-------TTCT--TC
T ss_pred CEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-hhcCCcEEEEeCCHHHHHHHHHh-------cCCC--Cc
Confidence 47999999999999999864 42125899999999998763 332 223455555444322211 1121 35
Q ss_pred cceEEecCCCCc
Q psy12304 195 VDLIVAGPPCQG 206 (620)
Q Consensus 195 vD~i~gGpPCQ~ 206 (620)
||.|..-..|..
T Consensus 129 vDgILfDLGVSS 140 (347)
T 3tka_A 129 IDGILLDLGVSS 140 (347)
T ss_dssp EEEEEEECSCCH
T ss_pred ccEEEECCccCH
Confidence 888888776643
No 303
>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}
Probab=33.53 E-value=30 Score=33.85 Aligned_cols=52 Identities=19% Similarity=0.105 Sum_probs=36.9
Q ss_pred cceecccccc---cHHHHHHHhc--CCCccEEEEcCchhHHHHHHHhcC---CCcccccchH
Q psy12304 118 LKCLDLFSGC---GGLMEGLCQA--GVAKPCWSVELERSEAASYDANFQ---ECSVIQDDCN 171 (620)
Q Consensus 118 l~~~dLFsG~---Gg~s~Gl~~a--G~~~~~~a~e~d~~a~~ty~~N~p---~~~~~~~di~ 171 (620)
-++|||=||. |.+..-+... |. -+.++|+++..++.-+.+.. ++.++.+|+.
T Consensus 79 ~~vLDlGcG~pt~G~~~~~~~~~~p~~--~v~~vD~sp~~l~~Ar~~~~~~~~v~~~~~D~~ 138 (274)
T 2qe6_A 79 SQFLDLGSGLPTVQNTHEVAQSVNPDA--RVVYVDIDPMVLTHGRALLAKDPNTAVFTADVR 138 (274)
T ss_dssp CEEEEETCCSCCSSCHHHHHHHHCTTC--EEEEEESSHHHHHHHHHHHTTCTTEEEEECCTT
T ss_pred CEEEEECCCCCCCChHHHHHHHhCCCC--EEEEEECChHHHHHHHHhcCCCCCeEEEEeeCC
Confidence 4799999999 9887666553 44 48899999999887777652 2334445543
No 304
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}
Probab=33.50 E-value=33 Score=34.56 Aligned_cols=43 Identities=12% Similarity=0.104 Sum_probs=31.6
Q ss_pred CcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhc
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANF 160 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~ 160 (620)
..+++|+-||.|.++..+....-.-.+.++|+ +..++.-+.+.
T Consensus 180 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~ 222 (352)
T 3mcz_A 180 ARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTI 222 (352)
T ss_dssp CCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHH
T ss_pred CCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHH
Confidence 56899999999999999987632124678999 66665555543
No 305
>2lci_A Protein OR36; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=29.46 E-value=1.1e+02 Score=24.64 Aligned_cols=46 Identities=15% Similarity=0.127 Sum_probs=36.0
Q ss_pred chHHHHHHHhhhcCCcEEEEccccccccccchhHHHHHHHHHHcCCCEEEEE
Q psy12304 224 GLVFTFLSFCDLFQPKYIILENVTGLVHFNKNEILQCIFHCLLKMNYQVTFD 275 (620)
Q Consensus 224 ~L~~~~~~~i~~~~P~~~v~ENV~gl~~~~~~~~~~~i~~~l~~~GY~v~~~ 275 (620)
.|+.+++++|..+.-++|++ +......-+..+.+.+++.||.|+-.
T Consensus 62 qllkemlelisklgykvfll------lqdqdeneleefkrkiesqgyevrkv 107 (134)
T 2lci_A 62 QLLKEMLELISKLGYKVFLL------LQDQDENELEEFKRKIESQGYEVRKV 107 (134)
T ss_dssp HHHHHHHHHHHHHTCCEEEE------EECSCHHHHHHHHHHHHTTTCEEEEE
T ss_pred HHHHHHHHHHHHhCceeEEE------eecCchhHHHHHHHHHHhCCeeeeec
Confidence 48899999999999999886 33333455777888889999998754
No 306
>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}
Probab=28.42 E-value=1.4e+02 Score=30.27 Aligned_cols=70 Identities=19% Similarity=0.245 Sum_probs=46.6
Q ss_pred CCcceecccccccHH---HHHHHhcCCCccEEEEcCchhHHHHHHHhcCCCcccccchHHHHHHhhcccccccCcCCCCC
Q psy12304 116 TPLKCLDLFSGCGGL---MEGLCQAGVAKPCWSVELERSEAASYDANFQECSVIQDDCNLVLKSLLKGHTQHKGVSLPQK 192 (620)
Q Consensus 116 ~~l~~~dLFsG~Gg~---s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p~~~~~~~di~~~~~~~~~~~~~~~~~~~p~~ 192 (620)
+++++.=+=+|..+. ...+...|+ +++..+|.++..++.+...++....+ .|..+++. .
T Consensus 25 ~~irvgiiG~G~~~~~~~~~~~~~~~~-~lvav~d~~~~~a~~~a~~~~~~~~~-~~~~~ll~----------------~ 86 (361)
T 3u3x_A 25 DELRFAAVGLNHNHIYGQVNCLLRAGA-RLAGFHEKDDALAAEFSAVYADARRI-ATAEEILE----------------D 86 (361)
T ss_dssp -CCEEEEECCCSTTHHHHHHHHHHTTC-EEEEEECSCHHHHHHHHHHSSSCCEE-SCHHHHHT----------------C
T ss_pred cCcEEEEECcCHHHHHHHHHHhhcCCc-EEEEEEcCCHHHHHHHHHHcCCCccc-CCHHHHhc----------------C
Confidence 456766555554442 234445787 88999999999999998888654443 67777642 1
Q ss_pred CccceEEecCC
Q psy12304 193 HEVDLIVAGPP 203 (620)
Q Consensus 193 ~~vD~i~gGpP 203 (620)
.++|+|+...|
T Consensus 87 ~~vD~V~I~tp 97 (361)
T 3u3x_A 87 ENIGLIVSAAV 97 (361)
T ss_dssp TTCCEEEECCC
T ss_pred CCCCEEEEeCC
Confidence 26888777665
No 307
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*
Probab=28.38 E-value=83 Score=31.28 Aligned_cols=128 Identities=16% Similarity=0.153 Sum_probs=71.2
Q ss_pred CcceecccccccHHHHHHHhcCCCccEEEEcCchhHHHHHHHhcC------CCcccccchHHHHHHhhcccccccCcCCC
Q psy12304 117 PLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQ------ECSVIQDDCNLVLKSLLKGHTQHKGVSLP 190 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p------~~~~~~~di~~~~~~~~~~~~~~~~~~~p 190 (620)
..+++|+=||.|.++..+....-.-.+.++|+ +..++.-+.+.. ...+..+|+. ..+|
T Consensus 170 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~---------------~~~p 233 (332)
T 3i53_A 170 LGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFF---------------DPLP 233 (332)
T ss_dssp GSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTT---------------SCCC
T ss_pred CCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCCC---------------CCCC
Confidence 46899999999999999987432123678899 888777766542 1223333331 1233
Q ss_pred CCCccceEEecCCCCccccccccchhhhcccccchHHHHHHHhhhcCC--cEEEEccccccccc-------------cch
Q psy12304 191 QKHEVDLIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLSFCDLFQP--KYIILENVTGLVHF-------------NKN 255 (620)
Q Consensus 191 ~~~~vD~i~gGpPCQ~fS~~~~~~~~~~~d~r~~L~~~~~~~i~~~~P--~~~v~ENV~gl~~~-------------~~~ 255 (620)
. .+|+|+...-...|+. +....++.+ +.+.++| ..++.|.+..-... ...
T Consensus 234 ~--~~D~v~~~~vlh~~~~----------~~~~~~l~~---~~~~L~pgG~l~i~e~~~~~~~~~~~~d~~~~~~~~~~~ 298 (332)
T 3i53_A 234 A--GAGGYVLSAVLHDWDD----------LSAVAILRR---CAEAAGSGGVVLVIEAVAGDEHAGTGMDLRMLTYFGGKE 298 (332)
T ss_dssp C--SCSEEEEESCGGGSCH----------HHHHHHHHH---HHHHHTTTCEEEEEECCCC---CCHHHHHHHHHHHSCCC
T ss_pred C--CCcEEEEehhhccCCH----------HHHHHHHHH---HHHhcCCCCEEEEEeecCCCCCccHHHHHHHHhhCCCCC
Confidence 2 6899986543322211 011223333 3344567 56777776432100 001
Q ss_pred hHHHHHHHHHHcCCCEEEEE
Q psy12304 256 EILQCIFHCLLKMNYQVTFD 275 (620)
Q Consensus 256 ~~~~~i~~~l~~~GY~v~~~ 275 (620)
...+++.+.|.+.|+.+...
T Consensus 299 ~t~~e~~~ll~~aGf~~~~~ 318 (332)
T 3i53_A 299 RSLAELGELAAQAGLAVRAA 318 (332)
T ss_dssp CCHHHHHHHHHHTTEEEEEE
T ss_pred CCHHHHHHHHHHCCCEEEEE
Confidence 22455667778889876433
No 308
>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}
Probab=27.73 E-value=1.1e+02 Score=26.06 Aligned_cols=37 Identities=14% Similarity=0.228 Sum_probs=27.5
Q ss_pred ccccccHHHHHHHh----cCCCccEEEEcCchhHHHHHHHhcC
Q psy12304 123 LFSGCGGLMEGLCQ----AGVAKPCWSVELERSEAASYDANFQ 161 (620)
Q Consensus 123 LFsG~Gg~s~Gl~~----aG~~~~~~a~e~d~~a~~ty~~N~p 161 (620)
++-|+|++...+.. .|+ + +..+|.++...+.+...+.
T Consensus 25 ~iiG~G~iG~~~a~~l~~~g~-~-v~v~~r~~~~~~~~a~~~~ 65 (144)
T 3oj0_A 25 LLVGNGMLASEIAPYFSYPQY-K-VTVAGRNIDHVRAFAEKYE 65 (144)
T ss_dssp EEECCSHHHHHHGGGCCTTTC-E-EEEEESCHHHHHHHHHHHT
T ss_pred EEECCCHHHHHHHHHHHhCCC-E-EEEEcCCHHHHHHHHHHhC
Confidence 35688988876654 576 6 8889999888877776664
No 309
>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043}
Probab=26.94 E-value=1.2e+02 Score=30.31 Aligned_cols=69 Identities=13% Similarity=0.198 Sum_probs=44.2
Q ss_pred CcceecccccccHH---HHHHHhcCCCccEEEEcCchhHHHHHHHhcCCCcccccchHHHHHHhhcccccccCcCCCCCC
Q psy12304 117 PLKCLDLFSGCGGL---MEGLCQAGVAKPCWSVELERSEAASYDANFQECSVIQDDCNLVLKSLLKGHTQHKGVSLPQKH 193 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~---s~Gl~~aG~~~~~~a~e~d~~a~~ty~~N~p~~~~~~~di~~~~~~~~~~~~~~~~~~~p~~~ 193 (620)
++++.=+=+|..|. ...+...|+ +++..+|.++..++.+...++....+ .|..+++. ..
T Consensus 4 ~~rvgiiG~G~~~~~~~~~~l~~~~~-~lvav~d~~~~~~~~~a~~~~~~~~~-~~~~~ll~----------------~~ 65 (336)
T 2p2s_A 4 KIRFAAIGLAHNHIYDMCQQLIDAGA-ELAGVFESDSDNRAKFTSLFPSVPFA-ASAEQLIT----------------DA 65 (336)
T ss_dssp CCEEEEECCSSTHHHHHHHHHHHTTC-EEEEEECSCTTSCHHHHHHSTTCCBC-SCHHHHHT----------------CT
T ss_pred ccEEEEECCChHHHHHhhhhhcCCCc-EEEEEeCCCHHHHHHHHHhcCCCccc-CCHHHHhh----------------CC
Confidence 45555443443332 234445687 88899999999888888888665543 57766642 12
Q ss_pred ccceEEecCC
Q psy12304 194 EVDLIVAGPP 203 (620)
Q Consensus 194 ~vD~i~gGpP 203 (620)
++|+|+...|
T Consensus 66 ~~D~V~i~tp 75 (336)
T 2p2s_A 66 SIDLIACAVI 75 (336)
T ss_dssp TCCEEEECSC
T ss_pred CCCEEEEeCC
Confidence 6888777655
No 310
>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}
Probab=26.41 E-value=93 Score=31.15 Aligned_cols=68 Identities=12% Similarity=0.073 Sum_probs=45.3
Q ss_pred CCcceecccccccHHHH-----HHHhc-CCCccEEEEcCchhHHHHHHHhcCCCcccccchHHHHHHhhcccccccCcCC
Q psy12304 116 TPLKCLDLFSGCGGLME-----GLCQA-GVAKPCWSVELERSEAASYDANFQECSVIQDDCNLVLKSLLKGHTQHKGVSL 189 (620)
Q Consensus 116 ~~l~~~dLFsG~Gg~s~-----Gl~~a-G~~~~~~a~e~d~~a~~ty~~N~p~~~~~~~di~~~~~~~~~~~~~~~~~~~ 189 (620)
++|++.=+ |+|.++. .+... ++ +++..+|.++..++.+...++-...+ .|..+++.+
T Consensus 22 ~mirigiI--G~G~ig~~~~~~~~~~~~~~-~lvav~d~~~~~a~~~a~~~g~~~~y-~d~~ell~~------------- 84 (350)
T 4had_A 22 SMLRFGII--STAKIGRDNVVPAIQDAENC-VVTAIASRDLTRAREMADRFSVPHAF-GSYEEMLAS------------- 84 (350)
T ss_dssp CCEEEEEE--SCCHHHHHTHHHHHHHCSSE-EEEEEECSSHHHHHHHHHHHTCSEEE-SSHHHHHHC-------------
T ss_pred CccEEEEE--cChHHHHHHHHHHHHhCCCe-EEEEEECCCHHHHHHHHHHcCCCeee-CCHHHHhcC-------------
Confidence 45666543 7777653 33443 55 88888999999999998888543333 678777531
Q ss_pred CCCCccceEEecCC
Q psy12304 190 PQKHEVDLIVAGPP 203 (620)
Q Consensus 190 p~~~~vD~i~gGpP 203 (620)
.++|+|+...|
T Consensus 85 ---~~iDaV~I~tP 95 (350)
T 4had_A 85 ---DVIDAVYIPLP 95 (350)
T ss_dssp ---SSCSEEEECSC
T ss_pred ---CCCCEEEEeCC
Confidence 26887766655
No 311
>4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida}
Probab=25.40 E-value=66 Score=32.57 Aligned_cols=70 Identities=13% Similarity=0.075 Sum_probs=44.0
Q ss_pred CCCcceecccccccHHHHH----HHhc-CC------CccEEEEcCchhHHHHHHHhcCCCcccccchHHHHHHhhccccc
Q psy12304 115 DTPLKCLDLFSGCGGLMEG----LCQA-GV------AKPCWSVELERSEAASYDANFQECSVIQDDCNLVLKSLLKGHTQ 183 (620)
Q Consensus 115 ~~~l~~~dLFsG~Gg~s~G----l~~a-G~------~~~~~a~e~d~~a~~ty~~N~p~~~~~~~di~~~~~~~~~~~~~ 183 (620)
++++++.=+ |+|.++.. +... ++ .+++..+|.++..++.+...++-..+ -.|..+++.
T Consensus 4 M~klrvgiI--G~G~ig~~h~~~~~~~~~~~~~~~~~~l~av~d~~~~~a~~~a~~~g~~~~-~~d~~~ll~-------- 72 (390)
T 4h3v_A 4 MTNLGIGLI--GYAFMGAAHSQAWRSAPRFFDLPLHPDLNVLCGRDAEAVRAAAGKLGWSTT-ETDWRTLLE-------- 72 (390)
T ss_dssp CCEEEEEEE--CHHHHHHHHHHHHHHHHHHSCCSSEEEEEEEECSSHHHHHHHHHHHTCSEE-ESCHHHHTT--------
T ss_pred CCcCcEEEE--cCCHHHHHHHHHHHhCccccccccCceEEEEEcCCHHHHHHHHHHcCCCcc-cCCHHHHhc--------
Confidence 455666544 77776543 2221 10 26788899999999999888864443 367776631
Q ss_pred ccCcCCCCCCccceEEecCC
Q psy12304 184 HKGVSLPQKHEVDLIVAGPP 203 (620)
Q Consensus 184 ~~~~~~p~~~~vD~i~gGpP 203 (620)
..++|+|+...|
T Consensus 73 --------~~~iDaV~I~tP 84 (390)
T 4h3v_A 73 --------RDDVQLVDVCTP 84 (390)
T ss_dssp --------CTTCSEEEECSC
T ss_pred --------CCCCCEEEEeCC
Confidence 126887766555
No 312
>4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae}
Probab=24.50 E-value=73 Score=32.90 Aligned_cols=68 Identities=15% Similarity=0.131 Sum_probs=45.1
Q ss_pred CCcceecccccccHHHH----HHHhc---------CCCccEEEEcCchhHHHHHHHhcCCCcccccchHHHHHHhhcccc
Q psy12304 116 TPLKCLDLFSGCGGLME----GLCQA---------GVAKPCWSVELERSEAASYDANFQECSVIQDDCNLVLKSLLKGHT 182 (620)
Q Consensus 116 ~~l~~~dLFsG~Gg~s~----Gl~~a---------G~~~~~~a~e~d~~a~~ty~~N~p~~~~~~~di~~~~~~~~~~~~ 182 (620)
.||++.=+ |+|.++. ++... ++ +++..+|.++..++.+...++....+ .|..+++.+
T Consensus 25 ~klrvgiI--G~G~ig~~h~~~~~~~~~~~~~~~~~~-elvav~d~~~~~a~~~a~~~~~~~~y-~d~~~ll~~------ 94 (412)
T 4gqa_A 25 ARLNIGLI--GSGFMGQAHADAYRRAAMFYPDLPKRP-HLYALADQDQAMAERHAAKLGAEKAY-GDWRELVND------ 94 (412)
T ss_dssp CEEEEEEE--CCSHHHHHHHHHHHHHHHHCTTSSSEE-EEEEEECSSHHHHHHHHHHHTCSEEE-SSHHHHHHC------
T ss_pred ccceEEEE--cCcHHHHHHHHHHHhccccccccCCCe-EEEEEEcCCHHHHHHHHHHcCCCeEE-CCHHHHhcC------
Confidence 45666544 6776653 33332 33 78888999999999999888754443 678777531
Q ss_pred cccCcCCCCCCccceEEecCC
Q psy12304 183 QHKGVSLPQKHEVDLIVAGPP 203 (620)
Q Consensus 183 ~~~~~~~p~~~~vD~i~gGpP 203 (620)
.++|+|+...|
T Consensus 95 ----------~~vD~V~I~tp 105 (412)
T 4gqa_A 95 ----------PQVDVVDITSP 105 (412)
T ss_dssp ----------TTCCEEEECSC
T ss_pred ----------CCCCEEEECCC
Confidence 26787766555
No 313
>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}
Probab=23.56 E-value=39 Score=33.49 Aligned_cols=34 Identities=24% Similarity=0.170 Sum_probs=25.5
Q ss_pred CcceecccccccHHHH-HHHhcCCCccEEEEcCchh
Q psy12304 117 PLKCLDLFSGCGGLME-GLCQAGVAKPCWSVELERS 151 (620)
Q Consensus 117 ~l~~~dLFsG~Gg~s~-Gl~~aG~~~~~~a~e~d~~ 151 (620)
..++|||.||.||++. ...+.|. .-+.++|+..+
T Consensus 91 ~~~VLDLGaAPGGWsQvAa~~~gv-~sV~GvdvG~d 125 (282)
T 3gcz_A 91 TGIVVDLGCGRGGWSYYAASLKNV-KKVMAFTLGVQ 125 (282)
T ss_dssp CEEEEEETCTTCHHHHHHHTSTTE-EEEEEECCCCT
T ss_pred CCEEEEeCCCCCHHHHHHHHhcCC-CeeeeEEeccC
Confidence 3489999999999998 5556676 44568888653
No 314
>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*
Probab=23.21 E-value=35 Score=33.69 Aligned_cols=31 Identities=26% Similarity=0.231 Sum_probs=22.5
Q ss_pred cceecccccccHHHH-HHHhcCCCccEEEEcCc
Q psy12304 118 LKCLDLFSGCGGLME-GLCQAGVAKPCWSVELE 149 (620)
Q Consensus 118 l~~~dLFsG~Gg~s~-Gl~~aG~~~~~~a~e~d 149 (620)
.++|||.||.||++. .++..|. .-+.++|+.
T Consensus 76 ~~VLDLGaAPGGWSQvAa~~~~~-~~v~g~dVG 107 (277)
T 3evf_A 76 GRVIDLGCGRGGWCYYAAAQKEV-SGVKGFTLG 107 (277)
T ss_dssp EEEEEETCTTCHHHHHHHTSTTE-EEEEEECCC
T ss_pred CEEEEecCCCCHHHHHHHHhcCC-CcceeEEEe
Confidence 479999999999998 4555565 345566654
No 315
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=21.76 E-value=1.9e+02 Score=24.49 Aligned_cols=64 Identities=11% Similarity=0.167 Sum_probs=41.0
Q ss_pred ccccccHHHHHH----HhcCCCccEEEEcCchhHHHHHHHhcCCCcccccchHH--HHHHhhcccccccCcCCCCCCccc
Q psy12304 123 LFSGCGGLMEGL----CQAGVAKPCWSVELERSEAASYDANFQECSVIQDDCNL--VLKSLLKGHTQHKGVSLPQKHEVD 196 (620)
Q Consensus 123 LFsG~Gg~s~Gl----~~aG~~~~~~a~e~d~~a~~ty~~N~p~~~~~~~di~~--~~~~~~~~~~~~~~~~~p~~~~vD 196 (620)
+.+|+|-+...+ ...|+ + +.++|.|+..++.++.. +..++.+|..+ .++.+ . ..++|
T Consensus 11 iIiG~G~~G~~la~~L~~~g~-~-v~vid~~~~~~~~~~~~--g~~~i~gd~~~~~~l~~a----------~---i~~ad 73 (140)
T 3fwz_A 11 LLVGYGRVGSLLGEKLLASDI-P-LVVIETSRTRVDELRER--GVRAVLGNAANEEIMQLA----------H---LECAK 73 (140)
T ss_dssp EEECCSHHHHHHHHHHHHTTC-C-EEEEESCHHHHHHHHHT--TCEEEESCTTSHHHHHHT----------T---GGGCS
T ss_pred EEECcCHHHHHHHHHHHHCCC-C-EEEEECCHHHHHHHHHc--CCCEEECCCCCHHHHHhc----------C---cccCC
Confidence 567888766544 45787 4 78999999999888762 55566666542 22211 1 12678
Q ss_pred eEEecCC
Q psy12304 197 LIVAGPP 203 (620)
Q Consensus 197 ~i~gGpP 203 (620)
+++...|
T Consensus 74 ~vi~~~~ 80 (140)
T 3fwz_A 74 WLILTIP 80 (140)
T ss_dssp EEEECCS
T ss_pred EEEEECC
Confidence 8887765
Done!