RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12304
(620 letters)
>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA
methyltransferase fold, maintenance methyla transferase;
HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A*
3pt6_A* 3pt9_A* 4da4_A*
Length = 1002
Score = 390 bits (1003), Expect = e-124
Identities = 224/619 (36%), Positives = 323/619 (52%), Gaps = 59/619 (9%)
Query: 5 VQWLVRPNDTILGDKIQF--DNSTLFLTNACESIDLSVIKKTVCVDFVTNDSSEEEILDN 62
V RP +T + D + L+ ++ +D ++ V++ + E +
Sbjct: 420 VNKFYRPENTHKSTPASYHADINLLYWSDEEAVVDFKAVQGRCTVEYGEDL---PECVQV 476
Query: 63 EHEEKDETIYTEYYRKTKDKHFVQPNARPLELAYILKIIHSKEFLPKF---------PMP 113
Y K K F P K + PK
Sbjct: 477 YSMGGPNRFYFLEAYNAKSKSFEDPPNHARSPGNKGKGKGKGKGKPKSQACEPSEPEIEI 536
Query: 114 LDTPLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQECSVIQDDCNLV 173
L+ LD+FSGCGGL EG QAG++ W++E+ A ++ N +V +DCN++
Sbjct: 537 KLPKLRTLDVFSGCGGLSEGFHQAGISDTLWAIEMWDPAAQAFRLNNPGSTVFTEDCNIL 596
Query: 174 LKSLLKGH-TQHKGVSLPQKHEVDLIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLSF 232
LK ++ G T +G LPQK +V+++ GPPCQGFS +NR SK KN LV +FLS+
Sbjct: 597 LKLVMAGETTNSRGQRLPQKGDVEMLCGGPPCQGFSGMNRFNSRTYSKFKNSLVVSFLSY 656
Query: 233 CDLFQPKYIILENVTGLVHFNKNEILQCIFHCLLKMNYQVTFDVLQSGNYGVAQSRNRVV 292
CD ++P++ +LENV V F ++ +L+ CL++M YQ TF VLQ+G YGVAQ+R R +
Sbjct: 657 CDYYRPRFFLLENVRNFVSFKRSMVLKLTLRCLVRMGYQCTFGVLQAGQYGVAQTRRRAI 716
Query: 293 ILASKPGYKLPSFPQPLHAFSNQLFTI-----NGNLVAN--KTSHAPYRSITVRDAISDL 345
ILA+ PG KLP FP+PLH F+ + + + V+N + S P+R+ITVRD +SDL
Sbjct: 717 ILAAAPGEKLPLFPEPLHVFAPRACQLSVVVDDKKFVSNITRLSSGPFRTITVRDTMSDL 776
Query: 346 PRVSQGAN--CYLFHNPPKTHFQRMMKDGSRIHDIHINLRELLQDHICKILSPLMEMRIR 403
P V GA+ ++ P++ FQR ++ +L+DHICK +S L+ R+R
Sbjct: 777 PEVRNGASALEISYNGEPQSWFQRQLRGAQYQP--------ILRDHICKDMSALVAARMR 828
Query: 404 LIPSFPNADWRDLPNICVKLPRGQHSYTEKLKYNAKKKKSVCDCKSSSSCTSKGQKNTII 463
IP P +DWRDLPNI V+L G + + ++ +K C+
Sbjct: 829 HIPLAPGSDWRDLPNIEVRLSDGTMARKLRYTHHDRKNGRSSSGALRGVCSCVEAGKACD 888
Query: 464 PWSLVHTASRNNNWQGVLGRLAWDESFDMTGQKNTIIPWSLVHTASRNNNWQGVLGRLAW 523
P + Q NT+IPW L HT +R+N+W G+ GRL W
Sbjct: 889 PAAR---------------------------QFNTLIPWCLPHTGNRHNHWAGLYGRLEW 921
Query: 524 DESFDTIVTTPNPLNKQGKILHPEQDRVLTVREYARAQGFPDSYVFRGGICDMYKQIGNA 583
D F T VT P P+ KQG++LHPEQ RV++VRE AR+QGFPD+Y G I D ++Q+GNA
Sbjct: 922 DGFFSTTVTNPEPMGKQGRVLHPEQHRVVSVRECARSQGFPDTYRLFGNILDKHRQVGNA 981
Query: 584 VPPPLAKAIGYEIIKCIGN 602
VPPPLAKAIG EI C+
Sbjct: 982 VPPPLAKAIGLEIKLCMLA 1000
Score = 54.1 bits (129), Expect = 1e-07
Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 4/78 (5%)
Query: 4 HVQWLVRPNDTILGDKIQFDNSTLFLTNACESIDLSVIKKTVCVDFVT--NDSSEEEILD 61
H W DT+LG D LFL + CE + LS I V V + + + E +D
Sbjct: 195 HAHWFCAGTDTVLGATS--DPLELFLVDECEDMQLSYIHSKVKVIYKAPSENWAMEGGMD 252
Query: 62 NEHEEKDETIYTEYYRKT 79
E + + T +Y+
Sbjct: 253 PESLLEGDDGKTYFYQLW 270
>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc
finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus
musculus} PDB: 3av5_A* 3av6_A*
Length = 1330
Score = 397 bits (1019), Expect = e-124
Identities = 220/621 (35%), Positives = 329/621 (52%), Gaps = 54/621 (8%)
Query: 1 MKAHVQWLVRPNDTILGDKIQF--DNSTLFLTNACESIDLSVIKKTVCVDFVTN--DSSE 56
+K + RP +T + D + L+ ++ ++ S ++ V++ + +S +
Sbjct: 727 IKLRLYKFYRPENTHRSYNGSYHTDINMLYWSDEEAVVNFSDVQGRCTVEYGEDLLESIQ 786
Query: 57 EEILDNEHEEKDETIYTEYYRKTKDKHFVQPNARPLELAYILKIIHSKEFLPKFPMPLDT 116
+ Y + +D + K + + P
Sbjct: 787 DYSQGGPDRFYFLEAYNSKTKNFEDPPNHARSPGNKGKGKGKGKGKGKHQVSEPKEPEAA 846
Query: 117 ----PLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQECSVIQDDCNL 172
L+ LD+FSGCGGL EG QAG+++ W++E+ A ++ N +V +DCN+
Sbjct: 847 IKLPKLRTLDVFSGCGGLSEGFHQAGISETLWAIEMWDPAAQAFRLNNPGTTVFTEDCNV 906
Query: 173 VLKSLLKGH-TQHKGVSLPQKHEVDLIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLS 231
+LK ++ G T G LPQK +V+++ GPPCQGFS +NR SK KN LV +FLS
Sbjct: 907 LLKLVMAGEVTNSLGQRLPQKGDVEMLCGGPPCQGFSGMNRFNSRTYSKFKNSLVVSFLS 966
Query: 232 FCDLFQPKYIILENVTGLVHFNKNEILQCIFHCLLKMNYQVTFDVLQSGNYGVAQSRNRV 291
+CD ++P++ +LENV V + ++ +L+ CL++M YQ TF VLQ+G YGVAQ+R R
Sbjct: 967 YCDYYRPRFFLLENVRNFVSYRRSMVLKLTLRCLVRMGYQCTFGVLQAGQYGVAQTRRRA 1026
Query: 292 VILASKPGYKLPSFPQPLHAFSNQLFTI-----NGNLVAN--KTSHAPYRSITVRDAISD 344
+ILA+ PG KLP FP+PLH F+ + + + V+N + S P+R+ITVRD +SD
Sbjct: 1027 IILAAAPGEKLPLFPEPLHVFAPRACQLSVVVDDKKFVSNITRLSSGPFRTITVRDTMSD 1086
Query: 345 LPRVSQGAN--CYLFHNPPKTHFQRMMKDGSRIHDIHINLRELLQDHICKILSPLMEMRI 402
LP + GA+ ++ P + FQR ++ + DHICK +SPL+ R+
Sbjct: 1087 LPEIQNGASNSEIPYNGEPLSWFQRQLRGSHYQPILR--------DHICKDMSPLVAARM 1138
Query: 403 RLIPSFPNADWRDLPNICVKLPRGQHSYTEKLKYNAKKKKSVCDCKSSSSCTSKGQKNTI 462
R IP FP +DWRDLPNI V+L G ++ + ++ K C+ K
Sbjct: 1139 RHIPLFPGSDWRDLPNIQVRLGDGVIAHKLQYTFHDVKNGYSSTGALRGVCSCAEGKACD 1198
Query: 463 IPWSLVHTASRNNNWQGVLGRLAWDESFDMTGQKNTIIPWSLVHTASRNNNWQGVLGRLA 522
Q +T+IPW L HT +R+N+W G+ GRL
Sbjct: 1199 PESR----------------------------QFSTLIPWCLPHTGNRHNHWAGLYGRLE 1230
Query: 523 WDESFDTIVTTPNPLNKQGKILHPEQDRVLTVREYARAQGFPDSYVFRGGICDMYKQIGN 582
WD F T VT P P+ KQG++LHPEQ RV++VRE AR+QGFPDSY F G I D ++Q+GN
Sbjct: 1231 WDGFFSTTVTNPEPMGKQGRVLHPEQHRVVSVRECARSQGFPDSYRFFGNILDRHRQVGN 1290
Query: 583 AVPPPLAKAIGYEIIKCIGNA 603
AVPPPLAKAIG EI C+ ++
Sbjct: 1291 AVPPPLAKAIGLEIKLCLLSS 1311
Score = 53.4 bits (127), Expect = 2e-07
Identities = 21/79 (26%), Positives = 29/79 (36%), Gaps = 5/79 (6%)
Query: 4 HVQWLVRPNDTILGDKIQFDNSTLFLTNACESIDLSVIKKTVCVDFVT---NDSSEEEIL 60
H W DT+LG D LFL CE++ LS I V V + N + E
Sbjct: 506 HAHWFCAGTDTVLGATS--DPLELFLVGECENMQLSYIHSKVKVIYKAPSENWAMEGGTD 563
Query: 61 DNEHEEKDETIYTEYYRKT 79
E T +++
Sbjct: 564 PETTLPGAEDGKTYFFQLW 582
>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding,
structural GENO protein structure initiative, PSI; 1.75A
{Escherichia coli O157}
Length = 376
Score = 281 bits (721), Expect = 1e-89
Identities = 87/486 (17%), Positives = 150/486 (30%), Gaps = 118/486 (24%)
Query: 118 LKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQECSVIQDDCNLVLKSL 177
L +DLFSG GGL G +AG +VE+++ ++ NF +Q+D +L+ +
Sbjct: 3 LNVIDLFSGVGGLSLGAARAGF-DVKMAVEIDQHAINTHAINFPRSLHVQEDVSLLNAEI 61
Query: 178 LKGHTQHKGVSLPQKHEVDLIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLSFCDLFQ 237
+KG +D I+ GPPCQGFS + + + +N L F Q
Sbjct: 62 IKGF-------FKNDMPIDGIIGGPPCQGFSSIGKGNPDDS---RNQLYMHFYRLVSELQ 111
Query: 238 PKYIILENVTGLVHFNKNEILQCIFHCLLKMNYQVTFDVLQSGNYGVAQSRNRVVILASK 297
P + + ENV G++ + I F+ + + +++ +YG R R + K
Sbjct: 112 PLFFLAENVPGIMQEKYSGIRNKAFNLVSGDYDILDPIKVKASDYGAPTIRTRYFFIGVK 171
Query: 298 PGYKLPSFPQPLHAFSNQLFTINGNLVANKTSHAPYRSITVRDAISDLPRVSQGANCYLF 357
KL + +TV+DA+ LP +
Sbjct: 172 KSLKLD-ISDEVF------------------MPKMIDPVTVKDALYGLPDIIDANWQS-- 210
Query: 358 HNPPKTHFQRMMKDGSRIHDIHINLRELLQDHICKILSPLMEMRIRLIPSFPNADWRDLP 417
+ ++ K G R + +L + + L
Sbjct: 211 DSESWRTIKKDRKGGFYEKLWGQIPRNVGDTESIA----------KLKNNIISGCTGTLH 260
Query: 418 NICVKLPRGQHSYTEKLKYNAKKKKSVCDCKSSSSCTSKGQKNTIIPWSLVHTASRNNNW 477
+ I+ + +
Sbjct: 261 ------------------------------------------SKIVQERYASLSFGETDK 278
Query: 478 QGVLGRLAWDESFDMTGQKNTIIPWSLVHTASRNNNWQGVLGRLAWDESFDTIVTTPNPL 537
RL + T+
Sbjct: 279 ISRSTRLDPNG------FCPTLR----------------------------AGTARDKGS 304
Query: 538 NKQGKILHPEQDRVLTVREYARAQGFPDSYVFRGGICDMYKQIGNAVPPPLAKAIGYEII 597
+ + +HP RV+T RE AR QGFPD + F ++QIGN+V P +A+ I +
Sbjct: 305 FQAVRPIHPYHPRVITPREAARLQGFPDWFRFHVTKWHSFRQIGNSVSPIVAEYILKGLY 364
Query: 598 KCIGNA 603
+
Sbjct: 365 NLLNEG 370
>1dct_A Protein (modification methylase HAEIII); enzyme, cytosine
methylase, transferase/DNA complex; HET: DNA C49 5CM;
2.80A {Haemophilus influenzae biotypeaegyptius} SCOP:
c.66.1.26
Length = 324
Score = 163 bits (414), Expect = 2e-45
Identities = 59/293 (20%), Positives = 104/293 (35%), Gaps = 42/293 (14%)
Query: 118 LKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQECSVIQDDCNLVLKSL 177
+ + LFSG GGL G +AG + + E ++S +Y++N +I+ D + +
Sbjct: 1 MNLISLFSGAGGLDLGFQKAGF-RIICANEYDKSIWKTYESNHSA-KLIKGDISKISSDE 58
Query: 178 LKGHTQHKGVSLPQKHEVDLIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLSFCDLFQ 237
+ D I+ GPPCQ +S+ R ++ + L + ++ +
Sbjct: 59 FP--------------KCDGIIGGPPCQSWSEGGSLRGIDDPR--GKLFYEYIRILKQKK 102
Query: 238 PKYIILENVTGLVHFNKNEILQCIFHCLLKMNYQVTFDVLQSGNYGVAQSRNRVVILASK 297
P + + ENV G++ N+ +Q Y V +L + +YGVAQ R RV + +
Sbjct: 103 PIFFLAENVKGMMAQRHNKAVQEFIQEFDNAGYDVHIILLNANDYGVAQDRKRVFYIGFR 162
Query: 298 PGYKLP-SFPQPLHAFSNQLFTINGNLVANKTSHAPYRSITVRDAISDLPRVSQGANCYL 356
+ P P T +D I DL A
Sbjct: 163 KELNINYLPPIPHL-----------------------IKPTFKDVIWDLKDNPIPALDKN 199
Query: 357 FHNPPKTHFQRMMKDGSRIHDIHINLRELLQDHICKILSPLMEMRIRLIPSFP 409
N K + I ++ + Q + + +L P P
Sbjct: 200 KTNGNKCIYPNHEYFIGSYSTIFMSRNRVRQWNEPAFTVQASGRQCQLHPQAP 252
Score = 96.7 bits (241), Expect = 4e-22
Identities = 35/129 (27%), Positives = 47/129 (36%), Gaps = 6/129 (4%)
Query: 473 RNNNWQGVLGRLAWDESFDMTGQKNTIIPWSLVHTASRNNNWQGVLGRLAWDESFDTIVT 532
N N + S+ + + + G +L ++
Sbjct: 201 TNGNKCIYPNHEYFIGSYSTIFMSRNRVRQW--NEPAFTVQASGRQCQLHPQAP--VMLK 256
Query: 533 TPNPLNKQGKILHPEQDRVLTVREYARAQGFPDSYVFRGG-ICDMYKQIGNAVPPPLAKA 591
LNK R LTVRE AR QGFPD ++F + D YK IGNAVP LA
Sbjct: 257 VSKNLNK-FVEGKEHLYRRLTVRECARVQGFPDDFIFHYESLNDGYKMIGNAVPVNLAYE 315
Query: 592 IGYEIIKCI 600
I I +
Sbjct: 316 IAKTIKSAL 324
>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase
homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP:
c.66.1.26
Length = 343
Score = 141 bits (357), Expect = 2e-37
Identities = 53/294 (18%), Positives = 101/294 (34%), Gaps = 33/294 (11%)
Query: 117 PLKCLDLFSGCGGLMEGLCQAGVAKPC-WSVELERSEAASYDANFQECSVIQDD-CNLVL 174
PL+ L+L+SG GG+ L ++ + ++++ Y NF ++ + L
Sbjct: 2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGITL 61
Query: 175 KSLLKGHTQHKGVSLPQKHEVDLIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLSFCD 234
+ + D+I+ PPCQ F+++ R ++ S+ L
Sbjct: 62 EEF-------------DRLSFDMILMSPPCQPFTRIGRQGDMTDSR--TNSFLHILDILP 106
Query: 235 LFQ--PKYIILENVTGLVHFNKNEILQCIFHCLLKMNYQVTFDVLQSGNYGVAQSRNRVV 292
Q PKYI+LENV G F + + + +Q +L + G+ SR R
Sbjct: 107 RLQKLPKYILLENVKG---FEVSSTRDLLIQTIENCGFQYQEFLLSPTSLGIPNSRLRYF 163
Query: 293 ILASKPGYKLPSFPQPLHAFSNQLFTINGNLVANKTSHAPYRSITVRDAISDLPRVSQGA 352
++A LP F P + + ++D + D V
Sbjct: 164 LIAKLQSEPLP-FQAPGQVLMEFPKIEIHRKNQQDSDLSVK---MLKDFLEDDTDV---- 215
Query: 353 NCYLFHN---PPKTHFQRMMKDGSRIHDIHINLRELLQDHICKILSPLMEMRIR 403
N YL +++ R + +L ++++
Sbjct: 216 NQYLLPPKSLLRYALLLDIVQPTCRRSVCFTKGYGSYIEGTGSVLQTAEDVQVE 269
Score = 101 bits (254), Expect = 1e-23
Identities = 15/115 (13%), Positives = 37/115 (32%), Gaps = 4/115 (3%)
Query: 486 WDESFDMTGQKNTIIPWSLVHTASRNNNWQGVLGRLAWDESFDTIVTTPNPLNKQGKILH 545
+ T +++ + + + + ++ +Q L
Sbjct: 231 LLDIVQPTCRRSVCFTKGYGSYIEGTGSVLQTAEDVQVENIYKSLTNLSQE--EQITKLL 288
Query: 546 PEQDRVLTVREYARAQGFPDSYVFRGGICD--MYKQIGNAVPPPLAKAIGYEIIK 598
+ R T +E A GFP + F I Y+ +GN++ + + + +
Sbjct: 289 ILKLRYFTPKEIANLLGFPPEFGFPEKITVKQRYRLLGNSLNVHVVAKLIKILYE 343
>2c7p_A Modification methylase HHAI; DNA methyltransferase,
methyltransferase, base flipping, restriction system,
transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus
haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A*
1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A*
3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A*
9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...
Length = 327
Score = 137 bits (347), Expect = 3e-36
Identities = 53/275 (19%), Positives = 98/275 (35%), Gaps = 44/275 (16%)
Query: 109 KFPMPLDTPLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQECSVIQD 168
+ T L+ +DLF+G GG L G A+ +S E ++ Y+ NF E +
Sbjct: 3 EIKDKQLTGLRFIDLFAGLGGFRLALESCG-AECVYSNEWDKYAQEVYEMNFGE--KPEG 59
Query: 169 DCNLVLKSLLKGHTQHKGVSLPQKHEVDLIVAGPPCQGFSQLNRARELEKSKLKNGLVFT 228
D V + + H D++ AG PCQ FS + + E S+ L F
Sbjct: 60 DITQVNEKTIPDH--------------DILCAGFPCQAFSISGKQKGFEDSR--GTLFFD 103
Query: 229 FLSFCDLFQPKYIILENVTGLVHFNKNEILQCIFHCLLKMNYQVTFDVLQSGNYGVAQSR 288
+PK + +ENV + L+ + + + +++Y VL + +YG+ Q R
Sbjct: 104 IARIVREKKPKVVFMENVKNFASHDNGNTLEVVKNTMNELDYSFHAKVLNALDYGIPQKR 163
Query: 289 NRVVILASKPGYKLPSF--PQPLHAFSNQLFTINGNLVANKTSHAPYRSITVRDAISDLP 346
R+ ++ + + +F P+P + V+D +
Sbjct: 164 ERIYMICFRNDLNIQNFQFPKPFE-----------------------LNTFVKDLLLPDS 200
Query: 347 RVSQGANCYLFHNPPKTHFQRMMKDGSRIHDIHIN 381
V ++ R+ +
Sbjct: 201 EVEHLVIDRKDLVMTNQEIEQTTPKTVRLGIVGKG 235
Score = 84.4 bits (209), Expect = 5e-18
Identities = 24/79 (30%), Positives = 31/79 (39%), Gaps = 1/79 (1%)
Query: 523 WDESFDTIVTT-PNPLNKQGKILHPEQDRVLTVREYARAQGFPDSYVFRGGICDMYKQIG 581
T+ K G L + R L RE AR G+PDSY YKQ G
Sbjct: 244 TRGIAITLSAYGGGIFAKTGGYLVNGKTRKLHPRECARVMGYPDSYKVHPSTSQAYKQFG 303
Query: 582 NAVPPPLAKAIGYEIIKCI 600
N+V + + I Y I +
Sbjct: 304 NSVVINVLQYIAYNIGSSL 322
>3me5_A Cytosine-specific methyltransferase; structural genomics, protein
structure initiative, NEW YORK structural genomix
research consortium; 1.75A {Shigella flexneri 2A} PDB:
3lx6_A
Length = 482
Score = 137 bits (347), Expect = 4e-35
Identities = 58/356 (16%), Positives = 117/356 (32%), Gaps = 37/356 (10%)
Query: 55 SEEEILDNEHEEKDETIYTEYYRKTKDKHFVQPNARPLELAYILKIIHSKEFLPKFPMPL 114
+ ++ + + ++ E A++ ++
Sbjct: 31 DVKMLVAQLNGVGENHWSAAILKRALANDSAWHRLSEKEFAHLQTLLPKPPEHHP----- 85
Query: 115 DTPLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQ---ECSVIQDDCN 171
+ +DLF+G GG+ G G + ++ E + +Y AN +D
Sbjct: 86 HYAFRFIDLFAGIGGIRRGFESIG-GQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIR 144
Query: 172 LVLKSLLKGHTQHKGVSLPQKH--EVDLIVAGPPCQGFSQLNRARELEKSKL-------K 222
+ S +G + ++H E D+++AG PCQ FS +++ + +
Sbjct: 145 DITLSHQEGVSDEAAAEHIRQHIPEHDVLLAGFPCQPFSLAGVSKKNSLGRAHGFACDTQ 204
Query: 223 NGLVFTFLSFCDLFQPKYIILENVTGLVHFNKNEILQCIFHCLLKMNYQVTFDVLQS--- 279
L F + D +P +LENV L +K + + I L ++ Y V
Sbjct: 205 GTLFFDVVRIIDARRPAMFVLENVKNLKSHDKGKTFRIIMQTLDELGYDVADAEDNGPDD 264
Query: 280 -----GNYGVAQSRNRVVILASKPGYKLP---SFPQPLHAFSNQLFTINGNLVANKTSHA 331
G + + Q R R+V++ + L + F Q T+ L +
Sbjct: 265 PKIIDGKHFLPQHRERIVLVGFRRDLNLKADFTLRDISECFPAQRVTLAQLLDPMVEAKY 324
Query: 332 PYRSITVRDAISDLPRVSQGANCYLF--------HNPPKTHFQRMMKDGSRIHDIH 379
+ + + N + + + +T R KDG+ I
Sbjct: 325 ILTPVLWKYLYRYAKKHQARGNGFGYGMVYPNNPQSVTRTLSARYYKDGAEILIDR 380
Score = 75.5 bits (185), Expect = 1e-14
Identities = 24/113 (21%), Positives = 38/113 (33%), Gaps = 11/113 (9%)
Query: 496 KNTIIPWSLVHTASRNNNWQGVLGRLAWDESFDTIVTTPNPLNKQGKILHPEQDRVLTVR 555
N + +A + +L WD + + + + R LT R
Sbjct: 355 PNNPQSVTRTLSARYYKDGAEILIDRGWDMATGEK-------DFDDPLNQQHRPRRLTPR 407
Query: 556 EYARAQGF----PDSYVFRGGICDMYKQIGNAVPPPLAKAIGYEIIKCIGNAV 604
E AR GF + Y+Q GN+V P+ A+ + I AV
Sbjct: 408 ECARLMGFEAPGEAKFRIPVSDTQAYRQFGNSVVVPVFAAVAKLLEPKIKQAV 460
>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A
{Entamoeba histolytica}
Length = 327
Score = 131 bits (331), Expect = 5e-34
Identities = 32/206 (15%), Positives = 75/206 (36%), Gaps = 22/206 (10%)
Query: 110 FPMPLDTPLKCLDLFSGCGGLMEGLCQAG--VAKPCWSVELERSEAASYDANFQECSVIQ 167
+ ++ FSG GGL ++ + ++ Y NF+E ++
Sbjct: 3 LGSMQQKQVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKEEVQVK 62
Query: 168 DDCNLVLKSLLKGHTQHKGVSLPQKHEVDLIVAGPPCQGFSQLNRARELEKSKLKNGLVF 227
+ ++ +K + + + PPCQ ++ ++ + + + V
Sbjct: 63 NLDSISIKQI-------------ESLNCNTWFMSPPCQPYNNSIMSKHKDINDPRAKSVL 109
Query: 228 TFLSF---CDLFQPKYIILENVTGLVHFNKNEILQCIFHCLLKMNYQVTFDVLQSGNYGV 284
+ +PK+I +ENV ++ + + I++ L+K Y + + + G+
Sbjct: 110 HLYRDILPYLINKPKHIFIENVPLF---KESLVFKEIYNILIKNQYYIKDIICSPIDIGI 166
Query: 285 AQSRNRVVILASKPGYKLPSFPQPLH 310
SR R ++A +K
Sbjct: 167 PNSRTRYYVMARLTPFKNE-IQLHQE 191
Score = 82.9 bits (205), Expect = 2e-17
Identities = 14/118 (11%), Positives = 35/118 (29%), Gaps = 3/118 (2%)
Query: 486 WDESFDMTGQKNTIIPWSLVHTASRNNNWQGVLGRLAWDESFDTIVTTPNPLNKQGKILH 545
+ D+ +K + + + S + K+ + L
Sbjct: 208 YSIPSDLILKKGMLFDIVGKDDKRTCCFTKSYTKIVEGTGSIYCPIEPHFIPVKKAEDLL 267
Query: 546 PEQDRVLTVREYARAQGFPDSYVFRGGIC---DMYKQIGNAVPPPLAKAIGYEIIKCI 600
+ R T E + GF ++ + Y+ +GN+V + + + +
Sbjct: 268 NKNLRYFTPNEIKKIHGFSSNFTTQIDGLTDKQQYQCLGNSVSCFVIAQLMEYLFDDL 325
>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A
(DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A
{Homo sapiens}
Length = 295
Score = 101 bits (252), Expect = 8e-24
Identities = 32/194 (16%), Positives = 57/194 (29%), Gaps = 30/194 (15%)
Query: 108 PKFPMPLDTPLKCLDLFSGCGGLMEGLCQAGVAKPC-WSVELERSEAASYDANFQECSVI 166
P P++ L LF G + L G+ + E+ Q +
Sbjct: 7 HHMPAEKRKPIRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVRHQGKIMY 66
Query: 167 QDDCNLVLKSLLKGHTQHKGVSLPQKHEVDLIVAGPPCQGFSQLNRARELEKSKLKNGLV 226
D + + DL++ G PC S +N AR+ L
Sbjct: 67 VGDV-----------RSVTQKHIQEWGPFDLVIGGSPCNDLSIVNPARKGLYEG-TGRLF 114
Query: 227 FTFLSFCDLFQ-------PKYIILENVTGLVHFNKNEILQCIFHCLLKMNYQVTFDVLQS 279
F F + P + + ENV + +K +I + + + ++ +
Sbjct: 115 FEFYRLLHDARPKEGDDRPFFWLFENVVAMGVSDKRDISRFL---------ESNPVMIDA 165
Query: 280 GNYGVAQSRNRVVI 293
A R R
Sbjct: 166 KEVS-AAHRARYFW 178
Score = 51.9 bits (124), Expect = 2e-07
Identities = 10/57 (17%), Positives = 22/57 (38%), Gaps = 2/57 (3%)
Query: 544 LHPEQDRVLTVREYARAQGFPDSYVFRGGICD--MYKQIGNAVPPPLAKAIGYEIIK 598
E++ +L E R GFP Y + + +G + P+ + + + +
Sbjct: 234 FMNEKEDILWCTEMERVFGFPVHYTDVSNMSRLARQRLLGRSWSVPVIRHLFAPLKE 290
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 62.9 bits (152), Expect = 2e-10
Identities = 82/574 (14%), Positives = 165/574 (28%), Gaps = 167/574 (29%)
Query: 62 NEHEEKD-ETIYTEYYRKTKD--KHFVQPNARPLELAYIL----KIIHSKEFLPKFPMPL 114
+ H D ET +Y + KD F + + I+ +E
Sbjct: 2 HHHHHMDFETGEHQY--QYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSK- 58
Query: 115 DTPLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQECSVIQDDCNLVL 174
D L LF W++ ++ E F E V++ + ++
Sbjct: 59 DAVSGTLRLF-------------------WTLLSKQEEMVQK---FVE-EVLRINYKFLM 95
Query: 175 KSLLKGHTQHKGVSLPQK---HEVDLIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLS 231
+ T+ + S+ + + D + Q F++ N +R KL+ L
Sbjct: 96 SPI---KTEQRQPSMMTRMYIEQRDRLYNDN--QVFAKYNVSRLQPYLKLRQAL------ 144
Query: 232 FCDLFQPKYIILENVTGLVHFNKNEILQCIFHCLLKMNYQVTFDVLQSGNYGV-----AQ 286
+L K ++++ V G K + ++ V ++ +
Sbjct: 145 -LELRPAKNVLIDGVLG---SGK--------TWVALDVCL-SYKVQCKMDFKIFWLNLKN 191
Query: 287 SRNRVVILASKPGYKLPSFPQPLHAFSNQLFTINGNLVANKTSHAPYRSITVRDAISDLP 346
+ +L + L Q+ N ++ +S+ R +++ + L
Sbjct: 192 CNSPETVL------------EMLQKLLYQI-DPNWTSRSDHSSNIKLRIHSIQAELRRLL 238
Query: 347 RVSQGANCYLFHNPPKTHFQRMMKDGSRIHDIHINLRELLQ--DHICKILSPLMEMRIRL 404
+ NC L + ++ + + CKI L+ R +
Sbjct: 239 KSKPYENCLL------------------VLL-NVQNAKAWNAFNLSCKI---LLTTRFKQ 276
Query: 405 IPSFPNADWRDLPNICVKLPRGQHSYTEKLKYNAKKKKSVCDCKSSSSCTSKGQKNTIIP 464
+ F +A +I + + E K T+ ++ +II
Sbjct: 277 VTDFLSAATTT--HISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIA 334
Query: 465 WSLVHTASRNNNWQGV------------LGRLAWDE---SFDMTG--QKNTIIPWSLVHT 507
S+ + +NW+ V L L E FD + IP
Sbjct: 335 ESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIP------ 388
Query: 508 ASRNNNWQGVLGRLAWDESFDT----IVTTPNP---LNKQGK-------------ILHPE 547
+L + W + + +V + + KQ K + E
Sbjct: 389 -------TILLSLI-WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLE 440
Query: 548 QDRVL---TVREYARAQGFP---------DSYVF 569
+ L V Y + F D Y +
Sbjct: 441 NEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFY 474
>2qrv_B DNA (cytosine-5)-methyltransferase 3-like; DNA methyltransferase 3A
(DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A
{Homo sapiens}
Length = 230
Score = 52.8 bits (126), Expect = 6e-08
Identities = 20/196 (10%), Positives = 51/196 (26%), Gaps = 54/196 (27%)
Query: 103 SKEFLPKFPMPLDTPLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQE 162
E P+ P++ L LF + + + + +
Sbjct: 19 PLEMFETVPVWRRQPVRVLSLFEDIKKELT--------------------SLGFLESGSD 58
Query: 163 CSVIQDDCNLVLKSLLKGHTQHKGVSLPQKHEVDLIVAGPPCQGFSQLNRARELEKSKLK 222
++ ++ ++ + G DL+ P G +
Sbjct: 59 PGQLKHVVDV--TDTVRKDVEEWG-------PFDLVYGATPPLGHTCDRP---------P 100
Query: 223 NGLVFTFLSFCDLFQPK-------YIILENVTGLVHFNKNEILQCIFHCLLKMNYQVTFD 275
+ +F F +PK + + + L + + + ++
Sbjct: 101 SWYLFQFHRLLQYARPKPGSPRPFFWMFVDNLVLNKEDLDVASR---------FLEMEPV 151
Query: 276 VLQSGNYGVAQSRNRV 291
+ + G Q+ RV
Sbjct: 152 TIPDVHGGSLQNAVRV 167
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 45.8 bits (108), Expect = 4e-05
Identities = 73/426 (17%), Positives = 125/426 (29%), Gaps = 154/426 (36%)
Query: 10 RPNDTILGDKIQFDNSTLFL-------TNAC--ESIDLSVIKKTVCVDFVTNDSSEEEIL 60
+ +++ L + N+ L T+ E DL + D + E L
Sbjct: 139 KKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLI---KFSAETL 195
Query: 61 DNEHEEKDETIYTEYYRKTKD-KHFVQ-PNARPLELAYILKIIHSKEFLPKFP--MPL-- 114
+ + + + + +++ P+ P K++L P PL
Sbjct: 196 SELIRTTLDA--EKVFTQGLNILEWLENPSNTP-----------DKDYLLSIPISCPLIG 242
Query: 115 ---------------DTPLKCLDLFSGCGGLMEGLCQAGV--AKPCWSVELERSEAASYD 157
TP + G G +GL A W A
Sbjct: 243 VIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKA-IT 301
Query: 158 ANF------QEC--------SVIQDDCN---------LVLKSL----LKGHTQHKGVSLP 190
F E S+++D L + +L ++ + LP
Sbjct: 302 VLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLP 361
Query: 191 QKHEV---------DLIVAGPPCQGFSQLNRARELEKSKLKNGL------------VFT- 228
+V +L+V+GPP Q LN L K+K +GL F+
Sbjct: 362 AGKQVEISLVNGAKNLVVSGPP-QSLYGLNLT--LRKAKAPSGLDQSRIPFSERKLKFSN 418
Query: 229 -FLS----F-CDLFQP-KYIILENVTGL-VHFN--------------------KNEILQC 260
FL F L P +I +++ V FN I +
Sbjct: 419 RFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISER 478
Query: 261 IFHCLLKM--------NYQVT----FDVLQSGNYGVAQSRN------RVVI---LASKP- 298
I C++++ ++ T F + GV RN RV++ L P
Sbjct: 479 IVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDINPD 538
Query: 299 ---GYK 301
G+K
Sbjct: 539 DDYGFK 544
Score = 42.7 bits (100), Expect = 4e-04
Identities = 74/485 (15%), Positives = 137/485 (28%), Gaps = 173/485 (35%)
Query: 49 FVTNDSSEEEILDNEHEEKDETIYTEY---YRKTKDKH-FVQ--PNARPLELAYILKII- 101
+V++ ++ + ++ TE+ Y + D H L ++I
Sbjct: 67 YVSSLVEPSKV--GQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIK 124
Query: 102 ---HSKEFLPK-FPMPLDTPL---------KCLDLFSGCGGLMEGLCQAGVAKPCWSVEL 148
++ + F ++ L + + +F GG Q G + EL
Sbjct: 125 NYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIF---GG------Q-GNTDDYFE-EL 173
Query: 149 ERSEAASYDANFQECSVIQDDCNLVLKSLLKGHTQHKGVSLPQKHEVDLI--VAGP---P 203
R +Y + +I L L++ + V ++++ + P P
Sbjct: 174 -RDLYQTYHVLVGD--LI-KFSAETLSELIRTTLDAEKV---FTQGLNILEWLENPSNTP 226
Query: 204 CQGFSQLNRARELEKSKLKNGLVFTFLSFCDLFQPKYIILENVTGLVHFNKNEILQCIFH 263
+ + L+ +S P +I V L H+ +
Sbjct: 227 DKDY-----------------LLSIPISC-----P--LI--GVIQLAHY-------VVTA 253
Query: 264 CLLKMNYQVTFDVLQSGNYGVAQSRNRVV----ILASKPGYKLPSFPQPLHAFSNQLFTI 319
LL L+ G G +Q +V I + SF + LF I
Sbjct: 254 KLLGFTPGELRSYLK-GATGHSQG---LVTAVAIAETDSW---ESFFVSVRKAITVLFFI 306
Query: 320 NGNLVANKTSHAPYRSIT---VRD-------------AISDLPRVS-----QGANCYLF- 357
G + + P S+ + D +IS+L + N +L
Sbjct: 307 -G-VRCYEA--YPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPA 362
Query: 358 --------HN---------PPK------THFQRMM----KDGSRI-HD---IHINLR--- 383
N PP+ ++ D SRI + + R
Sbjct: 363 GKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLP 422
Query: 384 -------ELLQDHICKILSPLMEMRIRL------IPSFPNADWRDL--------PNIC-- 420
LL I L++ + IP + D DL I
Sbjct: 423 VASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDC 482
Query: 421 -VKLP 424
++LP
Sbjct: 483 IIRLP 487
Score = 40.4 bits (94), Expect = 0.002
Identities = 64/431 (14%), Positives = 121/431 (28%), Gaps = 162/431 (37%)
Query: 194 EVDLIVAGPPCQGF--SQL-------------NRARELE-KSKLKNGLVFTFLSFC-DLF 236
E L+V P F SQL A + E + + LV FL + L
Sbjct: 17 EHVLLV--PTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAE--LVGKFLGYVSSLV 72
Query: 237 QPKYI-----ILENVTGLVHFNK-----NEILQCIFHCLLKMNYQVTFDVLQSGNYGVAQ 286
+P + +L L F N+I H L
Sbjct: 73 EPSKVGQFDQVLNLC--LTEFENCYLEGNDI-----HALA-----AKLLQENDT----TL 116
Query: 287 SRNRVVILASKPGYKLPSFPQPLHAFSNQLFTINGNLVANKTSHAPYRSITVRDAISDLP 346
+ + +I Y I ++A + S R
Sbjct: 117 VKTKELIKN----Y------------------ITARIMAKRPFDKKSNSALFRAVGEGNA 154
Query: 347 RV-----SQGANCYLFHNPPKTHFQRMMKDGSRIHDI-HINLRELLQDHICKILSPLMEM 400
++ QG +F+ + ++ H+ + +L++ + LS L+
Sbjct: 155 QLVAIFGGQGNT--------DDYFEEL----RDLYQTYHVLVGDLIKFSA-ETLSELIRT 201
Query: 401 RIRLIPSFPNA----DWRDLPN----------ICVKLPRGQHSYTEKLKYNAKKKKSVCD 446
+ F +W + P+ I + P + Y V
Sbjct: 202 TLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCP--LIGVIQLAHY-------VVT 252
Query: 447 CKSSSSCTSKGQKNTIIPWSLVHTASRNNNWQGVLGRLA------WDESFDMTGQKNTII 500
K + G+ + + + H+ QG++ +A W ESF ++ +K I
Sbjct: 253 AKLLG--FTPGELRSYLKGATGHS-------QGLVTAVAIAETDSW-ESFFVSVRK--AI 300
Query: 501 PWSLVHTASRNNNWQGVLGRLAW----------DESFDTIVTTPNPLNKQGKILHPEQDR 550
+ GV A+ ++S + P+P+
Sbjct: 301 TVLF---------FIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPM------------- 338
Query: 551 VLTVREYARAQ 561
L++ + Q
Sbjct: 339 -LSISNLTQEQ 348
Score = 35.4 bits (81), Expect = 0.062
Identities = 43/280 (15%), Positives = 84/280 (30%), Gaps = 100/280 (35%)
Query: 205 QGFSQ-LNRAREL-EKSKL-KNGLVFTFLSFCDL-FQPKY------IILENVTGL-VHFN 253
QG SQ +L + SK ++ V+ D F+ Y I++ N L +HF
Sbjct: 1624 QG-SQEQGMGMDLYKTSKAAQD--VWNR---ADNHFKDTYGFSILDIVINNPVNLTIHFG 1677
Query: 254 KNEILQCIFHCLLKMNYQVTFDVLQSGNYGVAQSRNRVVILASKPGYKLP-------SFP 306
E + I M ++ D G + + ++ ++ F
Sbjct: 1678 -GEKGKRIRENYSAMIFETIVD----GKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFT 1732
Query: 307 QPLHAFSNQLFTI----------NGNLVANKTS--H---------APYRSITVRDAIS-- 343
QP A L + G + A+ T H + +++ +
Sbjct: 1733 QP--A----LTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVV 1786
Query: 344 ---------DLPRVSQGANCY--LFHNPPKTHFQRMMKDGSR------IHDIHINLRELL 386
+PR G + Y + NP R+ S+ + + L+
Sbjct: 1787 FYRGMTMQVAVPRDELGRSNYGMIAINP-----GRVAASFSQEALQYVVERVGKRTGWLV 1841
Query: 387 Q--------------------DHICKILSPLMEMRIRLIP 406
+ D + +L+ + +I +I
Sbjct: 1842 EIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIE 1881
>1w4s_A Polybromo, polybromo 1 protein; BAH, bromo-associated homology
domain, chromatin remodelling, PBAF, SWI/SNF-B, RSC,
nuclear protein; 1.55A {Gallus gallus}
Length = 174
Score = 40.7 bits (95), Expect = 5e-04
Identities = 18/86 (20%), Positives = 30/86 (34%), Gaps = 4/86 (4%)
Query: 1 MKAHVQWLVRPNDTILGDKIQFDNSTLFLTNACESIDLSVIKKTVCVDFVTNDSSEEEIL 60
+ W RPN+T +F +F ++ + +S I V FV L
Sbjct: 60 KWLYGCWFYRPNETFHLATRKFLEKEVFKSDYYNKVPVSKILGKCVVMFVKEYFK----L 115
Query: 61 DNEHEEKDETIYTEYYRKTKDKHFVQ 86
E+ ++ E K K F +
Sbjct: 116 CPENFRDEDVYVCESRYSAKTKSFKK 141
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated
H3K4, de novo DNA methylation, transferase regulator;
HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Length = 386
Score = 39.2 bits (90), Expect = 0.003
Identities = 14/117 (11%), Positives = 32/117 (27%), Gaps = 25/117 (21%)
Query: 182 TQHKGVSLPQKHEVDLIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLSFCDLFQPK-- 239
T + + DL+ P G + + +F F +PK
Sbjct: 225 TDTVRKDVEEWGPFDLVYGATPPLGHTCDRP---------PSWYLFQFHRLLQYARPKPG 275
Query: 240 -----YIILENVTGLVHFNKNEILQCIFHCLLKMNYQVTFDVLQSGNYGVAQSRNRV 291
+ + + L + + + ++ + + G Q+ RV
Sbjct: 276 SPGPFFWMFVDNLVLNKEDLDVASR---------FLEMEPVTIPDVHGGSLQNAVRV 323
>4dov_A ORC1, origin recognition complex subunit 1; DNA replication,
replication; 1.70A {Mus musculus} PDB: 4dow_A*
Length = 163
Score = 34.3 bits (78), Expect = 0.045
Identities = 15/94 (15%), Positives = 30/94 (31%), Gaps = 15/94 (15%)
Query: 1 MKAHVQWLVRPNDTILGDKI----QFDNSTLFLTNAC---ESIDLSVIKKTVCVDFVTND 53
A VQW VR + + + +F + I++ I V V + +
Sbjct: 74 KCARVQWFVRFLEIPVSKRHLLGRSPPAQEIFWYDCSDWDNKINVETIIGPVQVVALAPE 133
Query: 54 SSEEEILDNEHEEKDETIYTEYYRKTKDKHFVQP 87
++K E + + + +K P
Sbjct: 134 E------VIPVDQKSEETL--FVKLSWNKKDFAP 159
>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural
genomics, PSI, protein structure initiative; HET: MSE;
1.60A {Enterococcus faecalis} SCOP: c.66.1.46
Length = 187
Score = 32.5 bits (75), Expect = 0.22
Identities = 21/92 (22%), Positives = 34/92 (36%), Gaps = 20/92 (21%)
Query: 119 KCLDLFSGCGGL-MEGLCQAGVAKPCWSVELERSEAASYDAN------FQECSVIQDDCN 171
LDL+SG GGL +E + + G +E + N ++ V + D N
Sbjct: 47 MALDLYSGSGGLAIEAVSR-G-MDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDAN 104
Query: 172 LVLKSLLKGHTQHKGVSLPQKHEVDLIVAGPP 203
L+ + Q DL++ PP
Sbjct: 105 RALEQFYEEKLQF-----------DLVLLDPP 125
>2esr_A Methyltransferase; structural genomics, hypothetical protein,
streptococcus PYO PSI, protein structure initiative;
HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46
Length = 177
Score = 29.8 bits (68), Expect = 1.5
Identities = 16/66 (24%), Positives = 27/66 (40%), Gaps = 9/66 (13%)
Query: 119 KCLDLFSGCGGL-MEGLCQAGVAKPCWSVELERSEAASYDANFQEC------SVIQDDCN 171
+ LDLF+G GGL +E + + G VE R A N ++++ +
Sbjct: 34 RVLDLFAGSGGLAIEAVSR-G-MSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAE 91
Query: 172 LVLKSL 177
+ L
Sbjct: 92 RAIDCL 97
>3e58_A Putative beta-phosphoglucomutase; structu genomics, PSI-2, protein
structure initiative, midwest CENT structural genomics;
1.86A {Streptococcus thermophilus lmg 18311}
Length = 214
Score = 29.5 bits (67), Expect = 2.8
Identities = 7/37 (18%), Positives = 13/37 (35%), Gaps = 7/37 (18%)
Query: 507 TASRNNNWQGVLGRLAWDESFDTIVTT-------PNP 536
++S + L FD +++ PNP
Sbjct: 112 SSSVKADIFRALEENRLQGFFDIVLSGEEFKESKPNP 148
>2kra_A Prokineticin BV8; beta strands, beta turn, helix, disulfide bond,
secreted, CO protein; NMR {Bombina variegata}
Length = 77
Score = 27.6 bits (61), Expect = 2.9
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
Query: 411 ADWRDLPNICVKLPRGQ-----HSYTEKLKYNAKKKKSVCDCKSSSSCTSKGQK 459
A NI +P G H + K+ Y+ K+ S+C CKS +C+ G+K
Sbjct: 20 AASAWSRNIRFCIPLGNSGEDCHPASHKVPYDGKRLSSLCPCKSGLTCSKSGEK 73
>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted
transferase, predicted O-methyltransferase, PFAM
PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}
Length = 260
Score = 29.1 bits (65), Expect = 3.6
Identities = 15/95 (15%), Positives = 30/95 (31%), Gaps = 7/95 (7%)
Query: 113 PLDTPLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDA--NFQ--ECSVIQD 168
D + DL +G G G+ A + ERS+ + A + + + +
Sbjct: 33 ADDRACRIADLGAGAGAA--GMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSA 90
Query: 169 DCNLVLKSLLKGHTQHKGVSLPQKHEVDLIVAGPP 203
++ + LP ++ PP
Sbjct: 91 RIEVLEADVTLRAKARVEAGLP-DEHFHHVIMNPP 124
>3qxg_A Inorganic pyrophosphatase; hydrolase, magnesium binding site, NEW
YORK research center for structural genomics; HET: TLA;
1.24A {Bacteroides thetaiotaomicron} PDB: 3qu2_A* 3qx7_A
3quq_A* 3r9k_A 3qut_A 3qu9_A* 3qu7_A 3qu5_A 3qyp_A
3quc_A 3qub_A 3qu4_A
Length = 243
Score = 29.2 bits (66), Expect = 4.0
Identities = 3/33 (9%), Positives = 12/33 (36%)
Query: 500 IPWSLVHTASRNNNWQGVLGRLAWDESFDTIVT 532
+ +V + + + + + + +VT
Sbjct: 126 LTPMVVTGSGQLSLLERLEHNFPGMFHKELMVT 158
>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase,
PSI, protei structure initiative; HET: MSE; 2.05A
{Escherichia coli} SCOP: c.66.1.46
Length = 202
Score = 28.3 bits (64), Expect = 5.4
Identities = 16/66 (24%), Positives = 26/66 (39%), Gaps = 12/66 (18%)
Query: 119 KCLDLFSGCGGLMEGLCQA---GVAKPCWSVELERSEAASYDAN-----FQECSVIQDDC 170
+CLD F+G G L GL +A A +E++R+ + N V+ +
Sbjct: 57 QCLDCFAGSGAL--GL-EALSRY-AAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNA 112
Query: 171 NLVLKS 176
L
Sbjct: 113 MSFLAQ 118
>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet,
methyltransferase fold, structura genomics, transferase;
HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32
Length = 207
Score = 28.5 bits (63), Expect = 5.9
Identities = 22/123 (17%), Positives = 38/123 (30%), Gaps = 16/123 (13%)
Query: 119 KCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQECSVIQDDCNLVLKSLL 178
DL +G G L G G AK VE+++ N E + + +
Sbjct: 52 VVADLGAGTGVLSYGALLLG-AKEVICVEVDKEAVDVLIENLGEF---KGKFKVFI---- 103
Query: 179 KGHTQHKGVSLPQKHEVDLIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLSFCDLFQP 238
G VD+++ PP G + + R + V +
Sbjct: 104 -------GDVSEFNSRVDIVIMNPPF-GSQRKHADRPFLLKAFEISDVVYSIHLAKPEVR 155
Query: 239 KYI 241
++I
Sbjct: 156 RFI 158
>3s6j_A Hydrolase, haloacid dehalogenase-like family; structural genomics,
PSI-2; 2.20A {Pseudomonas syringae PV}
Length = 233
Score = 28.4 bits (64), Expect = 6.7
Identities = 8/33 (24%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
Query: 500 IPWSLVHTASRNNNWQGVLGRLAWDESFDTIVT 532
+ W + T+ + L L D + IVT
Sbjct: 108 LKWCIA-TSGGIDTATINLKALKLDINKINIVT 139
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 27.8 bits (61), Expect = 7.5
Identities = 9/47 (19%), Positives = 18/47 (38%), Gaps = 14/47 (29%)
Query: 53 DSSEEEILDNEHEEKDETIYTEYYR-------KTK------DKHFVQ 86
D++ + + E+ + + E+ + K K DK F Q
Sbjct: 102 DAASKVMEQEWREKAKKDL-EEWNQRQSEQVEKNKINNRIADKAFYQ 147
>3dv9_A Beta-phosphoglucomutase; structural genomics, APC60149, PSI-
protein structure initiative, midwest center for
structural genomics, MCSG; HET: MSE; 1.72A {Bacteroides
vulgatus}
Length = 247
Score = 28.0 bits (63), Expect = 8.8
Identities = 3/33 (9%), Positives = 11/33 (33%)
Query: 500 IPWSLVHTASRNNNWQGVLGRLAWDESFDTIVT 532
+ +V + + + + + +VT
Sbjct: 125 LTPMVVTGSGQTSLLDRLNHNFPGIFQANLMVT 157
>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics,
PSI-2, protein structure initiative; 2.30A {Haemophilus
influenzae} SCOP: c.66.1.46
Length = 201
Score = 27.9 bits (63), Expect = 8.9
Identities = 7/12 (58%), Positives = 9/12 (75%)
Query: 119 KCLDLFSGCGGL 130
+CLD F+G G L
Sbjct: 56 ECLDGFAGSGSL 67
>2c1x_A UDP-glucose flavonoid 3-O glycosyltransferase; WINE, catalysis,
glycosylation; HET: UDP B3P; 1.9A {Vitis vinifera} SCOP:
c.87.1.10 PDB: 2c1z_A* 2c9z_A*
Length = 456
Score = 28.4 bits (64), Expect = 9.2
Identities = 7/40 (17%), Positives = 15/40 (37%)
Query: 378 IHINLRELLQDHICKILSPLMEMRIRLIPSFPNADWRDLP 417
H+ + E+ + + + + IP +RDL
Sbjct: 149 THVYIDEIREKIGVSGIQGREDELLNFIPGMSKVRFRDLQ 188
>2j3s_A Filamin-A; cytoskeleton, phosphorylation, structural protein; 2.5A
{Homo sapiens} SCOP: b.1.18.10 b.1.18.10 PDB: 2e9i_A
Length = 288
Score = 28.0 bits (61), Expect = 9.3
Identities = 26/213 (12%), Positives = 58/213 (27%), Gaps = 19/213 (8%)
Query: 190 PQKHEVDLIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLSFCDLFQPKYIILE----- 244
P + +++ A G + + K S ++ + L+
Sbjct: 70 PGNYIINIKFADQHVPGSPFSVKVTGEGRVKESITRRRRAPSVANVGSHCDLSLKIPEIS 129
Query: 245 --NVTGLVHFNKNEILQCIFHCLLKMNYQVTFDVLQSGNYGVAQSRNRVVILASKPGYKL 302
++T V + + Y + F + G + V+ + PG
Sbjct: 130 IQDMTAQVTSPSGKTHEAEIVEGENHTYCIRFVPAEMGTHTVSVKYKGQHV----PGSPF 185
Query: 303 PSFPQPLHAFSNQLFTINGNLVANKTSHAPYR-SITVRDAISDLPRVS----QGANCYLF 357
PL G + + P SI R+A + ++ A
Sbjct: 186 QFTVGPLGEGGAHKVRAGGPGLERAEAGVPAEFSIWTREAGAGGLAIAVEGPSKAEISFE 245
Query: 358 HNPPKTHFQRMMKDGSRIHDIHINLRELLQDHI 390
+ + +++ + E +HI
Sbjct: 246 DRKDGSCGVAYVVQEPGDYEVSVKFNE---EHI 275
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.136 0.425
Gapped
Lambda K H
0.267 0.0532 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,490,398
Number of extensions: 561812
Number of successful extensions: 1219
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1160
Number of HSP's successfully gapped: 45
Length of query: 620
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 521
Effective length of database: 3,937,614
Effective search space: 2051496894
Effective search space used: 2051496894
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.3 bits)