RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12304
(620 letters)
>d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus
haemolyticus [TaxId: 726]}
Length = 327
Score = 97.0 bits (240), Expect = 1e-22
Identities = 35/210 (16%), Positives = 59/210 (28%), Gaps = 17/210 (8%)
Query: 408 FPNADWRDLPNICVKLPRGQHSYTEKLKYNAKKKKSVCDCKSSSSCTSKGQKNTIIPWSL 467
F + + +L Y+ V + + + I +
Sbjct: 117 FMENVKNFASHDNGNTLEVVKNTMNELDYS--FHAKVLNALDYGIPQKRERIYMICFRND 174
Query: 468 VHTASRNNNWQGVLGRLAWDESFDMTGQKNTIIPWS------------LVHTASRNNNWQ 515
++ + L D + ++ +I T +
Sbjct: 175 LNIQNFQFPKPFELNTFVKDLLLPDSEVEHLVIDRKDLVMTNQEIEQTTPKTVRLGIVGK 234
Query: 516 GVLGRLAWDESFDTIVTT---PNPLNKQGKILHPEQDRVLTVREYARAQGFPDSYVFRGG 572
G G + I + K G L + R L RE AR G+PDSY
Sbjct: 235 GGQGERIYSTRGIAITLSAYGGGIFAKTGGYLVNGKTRKLHPRECARVMGYPDSYKVHPS 294
Query: 573 ICDMYKQIGNAVPPPLAKAIGYEIIKCIGN 602
YKQ GN+V + + I Y I +
Sbjct: 295 TSQAYKQFGNSVVINVLQYIAYNIGSSLNF 324
Score = 77.3 bits (189), Expect = 5e-16
Identities = 51/257 (19%), Positives = 90/257 (35%), Gaps = 30/257 (11%)
Query: 116 TPLKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQECSVIQDDCNLVLK 175
T L+ +DLF+G GG L G + +S E ++ Y+ NF E + D V +
Sbjct: 10 TGLRFIDLFAGLGGFRLALESCGA-ECVYSNEWDKYAQEVYEMNFGE--KPEGDITQVNE 66
Query: 176 SLLKGHTQHKGVSLPQKHEVDLIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLSFCDL 235
+ D++ AG PCQ FS + + E S+ F
Sbjct: 67 K--------------TIPDHDILCAGFPCQAFSISGKQKGFEDSRGTL--FFDIARIVRE 110
Query: 236 FQPKYIILENVTGLVHFNKNEILQCIFHCLLKMNYQVTFDVLQSGNYGVAQSRNRVVILA 295
+PK + +ENV + L+ + + + +++Y VL + +YG+ Q R R+ ++
Sbjct: 111 KKPKVVFMENVKNFASHDNGNTLEVVKNTMNELDYSFHAKVLNALDYGIPQKRERIYMIC 170
Query: 296 SKPGYKLPSFPQPLHAFSNQLFTINGNLVANKTSHAPYRSITVRDAISDLPRVSQGANCY 355
+ + +F P N V + D +
Sbjct: 171 FRNDLNIQNFQFPKPFELNTFVK-----------DLLLPDSEVEHLVIDRKDLVMTNQEI 219
Query: 356 LFHNPPKTHFQRMMKDG 372
P + K G
Sbjct: 220 EQTTPKTVRLGIVGKGG 236
>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 343
Score = 95.1 bits (235), Expect = 6e-22
Identities = 28/245 (11%), Positives = 64/245 (26%), Gaps = 12/245 (4%)
Query: 357 FHNPPKTHFQRMMKDGSRIHDIHINLRELLQDHICKILSPLMEMRIRLIPSFPNADW-RD 415
PK +K + ++ + L + + S
Sbjct: 108 LQKLPKYILLENVKGFEVSSTRDLLIQTIENCGFQYQEFLLSPTSLGIPNSRLRYFLIAK 167
Query: 416 LPNICVKLPRGQHSYTEKLKYNAKKKKSVCDCKSSSSCTSKGQKNTIIPWSLVHTASRNN 475
L + + E K +K S + +T + L+ S
Sbjct: 168 LQSEPLPFQAPGQVLMEFPKIEIHRKNQQDSDLSVKMLKDFLEDDTDVNQYLLPPKSLLR 227
Query: 476 NWQGVLGRLAWDESFDMTGQKNTIIPWSLVHTASRNNNWQGVLGRLAWDESFDTIVTTPN 535
+ T +++ + + + + ++
Sbjct: 228 YAL-------LLDIVQPTCRRSVCFTKGYGSYIEGTGSVLQTAEDVQVENIYKSLTNLSQ 280
Query: 536 PLNKQGKILHPEQDRVLTVREYARAQGFPDSYVFRGGICD--MYKQIGNAVPPPLAKAIG 593
+Q L + R T +E A GFP + F I Y+ +GN++ + +
Sbjct: 281 E--EQITKLLILKLRYFTPKEIANLLGFPPEFGFPEKITVKQRYRLLGNSLNVHVVAKLI 338
Query: 594 YEIIK 598
+ +
Sbjct: 339 KILYE 343
Score = 80.5 bits (197), Expect = 5e-17
Identities = 51/275 (18%), Positives = 99/275 (36%), Gaps = 24/275 (8%)
Query: 117 PLKCLDLFSGCGGLMEGLCQAGV-AKPCWSVELERSEAASYDANFQECSVIQDDCNLVLK 175
PL+ L+L+SG GG+ L ++ + A+ ++++ Y NF ++ +
Sbjct: 2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGITL 61
Query: 176 SLLKGHTQHKGVSLPQKHEVDLIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLSFCDL 235
+ D+I+ PPCQ F+++ R ++ S+ + L +
Sbjct: 62 EEFD------------RLSFDMILMSPPCQPFTRIGRQGDMTDSRTNSFLHILDILPRLQ 109
Query: 236 FQPKYIILENVTGLVHFNKNEILQCIFHCLLKMNYQVTFDVLQSGNYGVAQSRNRVVILA 295
PKYI+LENV G + ++L +Q +L + G+ SR R ++A
Sbjct: 110 KLPKYILLENVKGFEVSSTRDLLIQTIE---NCGFQYQEFLLSPTSLGIPNSRLRYFLIA 166
Query: 296 SKPGYKLPSFPQPLHAFSNQLFTINGNLVANKTSHAPYRSITVRDAISDLPRVSQGANCY 355
LP F P + + ++D + D V+Q Y
Sbjct: 167 KLQSEPLP-FQAPGQVLMEFP---KIEIHRKNQQDSDLSVKMLKDFLEDDTDVNQ----Y 218
Query: 356 LFHNPPKTHFQRMMKDGSRIHDIHINLRELLQDHI 390
L + ++ + + +I
Sbjct: 219 LLPPKSLLRYALLLDIVQPTCRRSVCFTKGYGSYI 253
>d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius
[TaxId: 197575]}
Length = 324
Score = 87.0 bits (214), Expect = 3e-19
Identities = 27/57 (47%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 545 HPEQDRVLTVREYARAQGFPDSYVFRGG-ICDMYKQIGNAVPPPLAKAIGYEIIKCI 600
R LTVRE AR QGFPD ++F + D YK IGNAVP LA I I +
Sbjct: 268 KEHLYRRLTVRECARVQGFPDDFIFHYESLNDGYKMIGNAVPVNLAYEIAKTIKSAL 324
Score = 73.1 bits (178), Expect = 1e-14
Identities = 52/266 (19%), Positives = 93/266 (34%), Gaps = 18/266 (6%)
Query: 118 LKCLDLFSGCGGLMEGLCQAGVAKPCWSVELERSEAASYDANFQECSVIQDDCNLVLKSL 177
+ + LFSG GGL G +AG + + E ++S +Y++N + D +
Sbjct: 1 MNLISLFSGAGGLDLGFQKAGF-RIICANEYDKSIWKTYESNHSAKLIKGDISKISSDEF 59
Query: 178 LKGHTQHKGVSLPQKHEVDLIVAGPPCQGFSQLNRARELEKSKLKNGLVFTFLSFCDLFQ 237
K D I+ GPPCQ +S+ R ++ + L + ++ +
Sbjct: 60 PK---------------CDGIIGGPPCQSWSEGGSLRGIDDP--RGKLFYEYIRILKQKK 102
Query: 238 PKYIILENVTGLVHFNKNEILQCIFHCLLKMNYQVTFDVLQSGNYGVAQSRNRVVILASK 297
P + + ENV G++ N+ +Q Y V +L + +YGVAQ R RV + +
Sbjct: 103 PIFFLAENVKGMMAQRHNKAVQEFIQEFDNAGYDVHIILLNANDYGVAQDRKRVFYIGFR 162
Query: 298 PGYKLPSFPQPLHAFSNQLFTINGNLVANKTSHAPYRSITVRDAISDLPRVSQGANCYLF 357
+ P H + +L N I G+ +F
Sbjct: 163 KELNINYLPPIPHLIKPTFKDVIWDLKDNPIPALDKNKTNGNKCIYPNHEYFIGSYSTIF 222
Query: 358 HNPPKTHFQRMMKDGSRIHDIHINLR 383
+ + + L
Sbjct: 223 MSRNRVRQWNEPAFTVQASGRQCQLH 248
>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 309
Score = 35.9 bits (82), Expect = 0.012
Identities = 24/136 (17%), Positives = 41/136 (30%), Gaps = 6/136 (4%)
Query: 83 HFVQPNARPLELAYILKIIHSKEFLPKFPMPLDTPLKCLDLFSGCGGLMEGLCQAGVAKP 142
F+ + + I E+L D PLK L+LF G AG
Sbjct: 99 EFLGRFTAFRHVGVFPEQIVHWEWLKNAVETADRPLKVLNLFGYTGVASLVAAAAG--AE 156
Query: 143 CWSVELERSEAASYDANFQECSVIQDDCNLVLKSLLKGHTQHKGVSLPQKHEVDLIVAGP 202
V+ + N + Q + + +K + + + D+I+ P
Sbjct: 157 VTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREE----RRGSTYDIILTDP 212
Query: 203 PCQGFSQLNRARELEK 218
P G +L
Sbjct: 213 PKFGRGTHGEVWQLFD 228
>d1czpa_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Cyanobacterium (Anabaena
sp.), pcc 7119 and 7120 [TaxId: 1167]}
Length = 98
Score = 26.5 bits (58), Expect = 3.2
Identities = 10/48 (20%), Positives = 15/48 (31%), Gaps = 2/48 (4%)
Query: 531 VTTPNPLNKQGKILHPEQDRVLTVREYARAQGFPDSYVFRGGICDMYK 578
VT N + D + + A QG+ + R G C
Sbjct: 5 VTLINEAEGTKHEIEVPDDE--YILDAAEEQGYDLPFSCRAGACSTCA 50
>d1usga_ c.93.1.1 (A:) Leucine-binding protein {Escherichia coli
[TaxId: 562]}
Length = 346
Score = 28.2 bits (61), Expect = 3.5
Identities = 10/35 (28%), Positives = 15/35 (42%)
Query: 468 VHTASRNNNWQGVLGRLAWDESFDMTGQKNTIIPW 502
+ + N V+G L WDE D+ G + W
Sbjct: 302 LVKDLKANGANTVIGPLNWDEKGDLKGFDFGVFQW 336
>d1imta2 g.3.10.1 (A:37-80) Intestinal toxin 1 {Black mamba
(Dendroaspis polylepis polylepis) [TaxId: 8620]}
Length = 44
Score = 24.8 bits (54), Expect = 5.1
Identities = 5/27 (18%), Positives = 13/27 (48%)
Query: 428 HSYTEKLKYNAKKKKSVCDCKSSSSCT 454
H + K+ ++ ++ C C + +C
Sbjct: 6 HPASHKIPFSGQRMHHTCPCAPNLACV 32
>d3d1ma1 d.65.1.2 (A:41-188) Sonic hedgehog {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 148
Score = 26.7 bits (59), Expect = 6.3
Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 17/64 (26%)
Query: 475 NNWQGVLGRL--AWDESFDMTGQKNTIIPWSL--------VHTASRNNNWQGVLGRLAWD 524
N W GV R+ WDE + SL + T+ R+ + G+L RLA +
Sbjct: 76 NQWPGVKLRVTEGWDEDGHHS-------EESLHYEGRAVDITTSDRDRSKYGMLARLAVE 128
Query: 525 ESFD 528
FD
Sbjct: 129 AGFD 132
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.136 0.425
Gapped
Lambda K H
0.267 0.0656 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,369,142
Number of extensions: 113182
Number of successful extensions: 288
Number of sequences better than 10.0: 1
Number of HSP's gapped: 281
Number of HSP's successfully gapped: 13
Length of query: 620
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 529
Effective length of database: 1,158,166
Effective search space: 612669814
Effective search space used: 612669814
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.5 bits)