Query psy12306
Match_columns 1643
No_of_seqs 720 out of 3665
Neff 7.2
Searched_HMMs 46136
Date Fri Aug 16 15:39:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12306.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12306hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2301|consensus 100.0 4E-202 8E-207 1980.3 48.2 1240 1-1365 77-1584(1592)
2 KOG2302|consensus 100.0 8E-146 2E-150 1295.8 32.8 1064 2-1176 81-1690(1956)
3 KOG2301|consensus 100.0 9E-114 2E-118 1139.5 33.4 1113 245-1550 61-1589(1592)
4 KOG2302|consensus 100.0 3.9E-82 8.5E-87 752.7 20.9 793 247-1172 66-1390(1956)
5 PF00520 Ion_trans: Ion transp 99.8 9.7E-20 2.1E-24 201.8 6.4 191 941-1166 1-200 (200)
6 PF00520 Ion_trans: Ion transp 99.8 1E-19 2.2E-24 201.7 0.6 196 587-853 1-200 (200)
7 KOG3713|consensus 99.8 2.7E-18 5.8E-23 203.4 11.9 210 246-471 175-399 (477)
8 PLN03223 Polycystin cation cha 99.7 1.3E-16 2.8E-21 203.3 15.5 251 935-1215 1174-1472(1634)
9 KOG1545|consensus 99.6 3.8E-16 8.3E-21 175.0 6.8 196 262-469 193-413 (507)
10 KOG3713|consensus 99.5 8.7E-15 1.9E-19 173.9 6.5 239 894-1176 172-436 (477)
11 PLN03223 Polycystin cation cha 99.4 4.5E-14 9.8E-19 180.5 4.6 201 579-863 1172-1428(1634)
12 KOG1545|consensus 99.4 1.3E-14 2.8E-19 162.9 -0.7 251 885-1176 162-452 (507)
13 KOG4390|consensus 99.4 4.5E-14 9.8E-19 159.2 -2.4 186 261-471 186-378 (632)
14 PF08763 Ca_chan_IQ: Voltage g 99.3 3.1E-13 6.7E-18 102.0 1.2 30 1483-1512 2-31 (35)
15 PF08016 PKD_channel: Polycyst 99.2 3.2E-11 7E-16 150.5 12.2 197 938-1172 212-424 (425)
16 KOG3599|consensus 99.2 3.3E-11 7.2E-16 156.0 10.4 204 935-1176 464-685 (798)
17 KOG4390|consensus 98.8 1.5E-10 3.2E-15 131.3 -5.3 230 894-1175 165-414 (632)
18 PF08016 PKD_channel: Polycyst 98.7 1.2E-08 2.5E-13 127.8 4.5 188 578-859 206-424 (425)
19 KOG3599|consensus 98.7 1.1E-08 2.3E-13 133.1 4.0 193 577-862 460-684 (798)
20 KOG1419|consensus 98.7 8.2E-08 1.8E-12 114.9 10.8 149 319-472 129-296 (654)
21 TIGR00870 trp transient-recept 98.4 3.3E-07 7.2E-12 123.0 6.2 213 940-1176 392-621 (743)
22 PF08763 Ca_chan_IQ: Voltage g 98.2 1.1E-06 2.4E-11 67.1 3.5 30 1303-1332 2-31 (35)
23 KOG1419|consensus 97.8 1.4E-05 3E-10 96.4 4.6 165 909-1094 96-274 (654)
24 TIGR00870 trp transient-recept 97.6 1.9E-05 4.1E-10 106.2 2.3 68 784-863 554-621 (743)
25 PLN03192 Voltage-dependent pot 97.5 0.00028 6E-09 95.9 10.3 181 261-469 63-270 (823)
26 KOG3609|consensus 97.1 0.00054 1.2E-08 87.5 6.0 219 938-1176 385-617 (822)
27 PLN03192 Voltage-dependent pot 96.9 0.0016 3.6E-08 88.5 7.6 74 908-982 63-151 (823)
28 KOG3614|consensus 95.8 0.081 1.8E-06 71.2 13.5 233 916-1175 805-1047(1381)
29 KOG3733|consensus 95.0 0.06 1.3E-06 63.9 7.7 143 1018-1193 384-531 (566)
30 KOG3609|consensus 92.5 0.21 4.7E-06 64.7 6.7 138 326-463 395-560 (822)
31 KOG0510|consensus 87.5 0.51 1.1E-05 60.9 4.1 175 963-1176 588-763 (929)
32 KOG3676|consensus 86.1 2 4.4E-05 55.9 8.3 108 1045-1176 540-653 (782)
33 KOG1420|consensus 86.0 0.6 1.3E-05 57.2 3.4 75 912-986 129-212 (1103)
34 KOG0498|consensus 82.6 3.8 8.2E-05 54.2 8.7 86 320-406 122-227 (727)
35 PRK10537 voltage-gated potassi 81.2 3 6.5E-05 51.9 6.9 83 377-470 107-189 (393)
36 PF06512 Na_trans_assoc: Sodiu 79.6 0.45 9.7E-06 55.2 -1.0 25 560-584 213-237 (239)
37 KOG0510|consensus 78.8 0.39 8.5E-06 61.9 -1.8 74 785-863 689-763 (929)
38 COG5126 FRQ1 Ca2+-binding prot 77.4 11 0.00024 40.8 8.7 73 1179-1260 13-85 (160)
39 KOG2243|consensus 75.3 5.4 0.00012 53.1 6.6 147 1018-1183 4789-4935(5019)
40 KOG1420|consensus 74.2 4.9 0.00011 49.7 5.6 50 318-367 165-215 (1103)
41 KOG3614|consensus 74.2 3.2 7E-05 56.8 4.5 101 328-431 835-949 (1381)
42 KOG3533|consensus 71.2 11 0.00025 50.9 8.1 51 1022-1072 2396-2446(2706)
43 KOG3533|consensus 70.6 3.9 8.5E-05 54.9 3.9 29 833-861 2545-2573(2706)
44 PF13499 EF-hand_7: EF-hand do 66.2 12 0.00025 33.8 5.1 63 1188-1254 2-64 (66)
45 KOG0027|consensus 63.1 20 0.00043 38.4 7.1 62 1184-1253 83-144 (151)
46 PF14658 EF-hand_9: EF-hand do 62.0 28 0.00061 32.0 6.5 58 1192-1255 4-61 (66)
47 PF13405 EF-hand_6: EF-hand do 59.5 11 0.00023 28.9 3.0 28 1187-1214 1-28 (31)
48 PF00036 EF-hand_1: EF hand; 59.2 11 0.00024 28.6 3.0 28 1188-1215 2-29 (29)
49 cd00213 S-100 S-100: S-100 dom 54.6 32 0.00069 33.0 6.2 72 1182-1257 4-78 (88)
50 KOG0027|consensus 53.8 61 0.0013 34.6 8.8 71 1181-1259 3-73 (151)
51 PF06512 Na_trans_assoc: Sodiu 50.5 5 0.00011 46.5 -0.2 28 243-270 212-239 (239)
52 smart00054 EFh EF-hand, calciu 49.3 7.5 0.00016 27.5 0.7 28 1437-1464 1-28 (29)
53 smart00027 EH Eps15 homology d 47.6 65 0.0014 31.6 7.2 67 1180-1256 4-70 (96)
54 KOG0041|consensus 43.1 12 0.00027 41.1 1.4 67 1181-1255 94-160 (244)
55 KOG0498|consensus 42.3 25 0.00054 46.8 4.3 74 908-982 79-176 (727)
56 smart00054 EFh EF-hand, calciu 41.8 24 0.00051 24.8 2.4 27 1188-1214 2-28 (29)
57 cd05025 S-100A1 S-100A1: S-100 39.4 65 0.0014 31.3 5.7 71 1185-1259 8-81 (92)
58 PF00612 IQ: IQ calmodulin-bin 37.9 48 0.001 23.1 3.2 17 1312-1328 3-19 (21)
59 PTZ00183 centrin; Provisional 37.7 81 0.0018 33.3 6.8 70 1179-1256 10-79 (158)
60 cd05022 S-100A13 S-100A13: S-1 36.5 91 0.002 30.4 6.1 69 1185-1260 7-77 (89)
61 PF13405 EF-hand_6: EF-hand do 34.4 16 0.00034 27.9 0.4 28 1437-1464 1-28 (31)
62 KOG0501|consensus 30.1 40 0.00086 42.6 3.0 90 891-981 202-306 (971)
63 PF10864 DUF2663: Protein of u 29.1 1.8E+02 0.0039 30.5 7.0 59 103-176 34-94 (130)
64 cd00051 EFh EF-hand, calcium b 27.1 2E+02 0.0044 24.1 6.4 57 1189-1253 3-59 (63)
65 PTZ00184 calmodulin; Provision 27.0 1.4E+02 0.0031 30.9 6.3 69 1180-1256 5-73 (149)
66 PF07466 DUF1517: Protein of u 26.9 21 0.00045 42.6 -0.1 86 1522-1613 107-192 (289)
67 PF00325 Crp: Bacterial regula 26.8 86 0.0019 24.7 3.2 25 1577-1601 3-27 (32)
68 cd05026 S-100Z S-100Z: S-100Z 23.3 2.3E+02 0.005 27.7 6.5 69 1185-1258 9-81 (93)
69 cd05031 S-100A10_like S-100A10 23.2 1.6E+02 0.0034 28.7 5.4 73 1185-1261 7-82 (94)
70 PF08976 DUF1880: Domain of un 22.8 38 0.00082 34.5 0.9 27 1436-1462 7-33 (118)
71 PF13833 EF-hand_8: EF-hand do 21.9 96 0.0021 26.6 3.2 29 1186-1214 25-53 (54)
72 KOG3676|consensus 21.0 2.7E+02 0.0058 37.4 8.0 62 93-160 586-650 (782)
73 PF00036 EF-hand_1: EF hand; 21.0 40 0.00086 25.7 0.5 29 1437-1465 1-29 (29)
74 cd00052 EH Eps15 homology doma 20.9 2.7E+02 0.0058 24.6 6.1 58 1190-1257 3-60 (67)
75 cd00051 EFh EF-hand, calcium b 20.4 55 0.0012 27.7 1.4 30 1439-1468 3-32 (63)
76 KOG0501|consensus 20.2 92 0.002 39.6 3.5 73 324-397 258-344 (971)
No 1
>KOG2301|consensus
Probab=100.00 E-value=3.8e-202 Score=1980.34 Aligned_cols=1240 Identities=37% Similarity=0.583 Sum_probs=1041.2
Q ss_pred CcchhHHHHHHHHHHHHHhcCCCCCCCCChhhHHHhhhhHHHHHHHHHHHHHHHhhhcccccCcccccccccccceeEEE
Q psy12306 1 PFEYLILLTIFANCVALAVYTPYPNSDSNSTNAYLENIEYIFLVIFTVECVMKILAYGFVAHPGAYLRNGWNLLDFTIVV 80 (1643)
Q Consensus 1 ~F~~~Il~~Il~Nci~la~~~p~~~~d~~~~~~~l~~~E~iF~~iFt~E~~lKiiA~Gf~~~~~aYLrd~WN~lDf~VVi 80 (1643)
||+.+|++||++||++||++.| +.+++..||+|++|||+|+++||+|+||++|+++||||||||+||+||+
T Consensus 77 ~f~~~i~~ti~~ncv~~~~~~~---------~~~~~~~e~~f~~i~~~E~~~ki~a~G~~~~~~sylr~~wn~ldf~vvv 147 (1592)
T KOG2301|consen 77 WFSLFILATIIANCVVMAMTPL---------NYWILAAEYTFLGIFTFESVVKILARGFFRCDFSYLRDPWNWLDFVVIV 147 (1592)
T ss_pred cHHHHHHHHHHHHeeeeccCCC---------CcchhhcceehhhHHHHHHHHHHHHHHhhcCCCcccCCccccccEEEee
Confidence 7999999999999999999833 2357889999999999999999999999999999999999999999999
Q ss_pred ec------------------------------------------------------------------------------
Q psy12306 81 IG------------------------------------------------------------------------------ 82 (1643)
Q Consensus 81 ~g------------------------------------------------------------------------------ 82 (1643)
+|
T Consensus 148 ~~~~s~~~~~~~~~~lR~frvlr~lk~vs~~~~lk~~~~~ii~~~~~l~~~~~l~~f~~~ifa~igl~lf~g~l~~~C~~ 227 (1592)
T KOG2301|consen 148 IGLLSTLLHLYNIRALRTFRVLRALKLVSGIPGLKTRVGALIKASKQLVDVVILTFFFLSVFALIGLQLFMGRLTYKCVQ 227 (1592)
T ss_pred eehHHHhccccchhhhccccccchhhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHhhhc
Confidence 77
Q ss_pred -c----------------------------------cccCCCCcccccCcHHHHHHHHHHhhcccChHHHHHHHHHhcCC
Q psy12306 83 -G----------------------------------YWEGPNNGITNFDNFGLAMLTVFQCITLEGWTDVLYNIEDALGR 127 (1643)
Q Consensus 83 -~----------------------------------~~~~Pn~G~t~FDnf~~A~ltlFqliT~egW~dVmy~~~da~g~ 127 (1643)
+ .|.|||+|||+||||+||++|+|||+|+|||+|++|+++|+.|
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~C~~~~~~p~~g~t~Fd~f~~a~lt~f~~~tqe~w~~~~y~~~~a~g- 306 (1592)
T KOG2301|consen 228 PKPNNVTINDRAIPDTYCAPEGIGGLLCGNNYVCMQLGANPNGGYTSFDSFGWAFLTVFRLMTQEGWEDLLYLTLDALG- 306 (1592)
T ss_pred CCCCCceeccccCcccccCcCCCCccccCCccchhhcCCCCCCCcccchHHHHHHHHHHHHHhhcchHHHHHHHHHhcc-
Confidence 1 1889999999999999999999999999999999999999999
Q ss_pred ceeeehhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhhhhcccccCCchhhhcccc
Q psy12306 128 TWQWTYFVSMVILGAFFVMNLILGVLSGEFSKEREKAKARGDFHKLREKQQIEEDLRGYLDWITQAEDIEPEGEERANHH 207 (1643)
Q Consensus 128 ~~~~iyFV~~I~iGsFfllNL~LAVI~~~F~~er~k~~~r~~f~~l~~~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 207 (1643)
.|+|+|||++|++||||++||+|||++++|+|||++.+.+.++++.|.+|+.+++++++.+|..++++....++......
T Consensus 307 ~~~~~~Fv~~i~lgsf~~~nl~l~vls~~f~e~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (1592)
T KOG2301|consen 307 KWYMLFFVTLIFLGSFYVKNLFLAVLSMAFAEERVAFEEEWQFKEPRFQEAFEELLEKYEDGIFLAEADGSVESGPKSKL 386 (1592)
T ss_pred cceeEeeehhhhhccHHHHHHHHHHhhHHHHHHHHHHHhhhhhhchHHHHHHHHHHHHHHHHHHHHHHhhhhccccchhh
Confidence 89999999999999999999999999999999999999999999999999999999999999988887654433110000
Q ss_pred ccccCCCCcccccccccCCccccchhhhhhccc-----cccccchhhhhhhhccccccchhhhHhHHHHHHHHHHHhhcc
Q psy12306 208 DQKNKSSSETESADRLEGDEGENQESWWRKKNK-----DFDRNNRRMRRACRKAVKSQGFYWLIIILVFLNTGVLATEHY 282 (1643)
Q Consensus 208 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~r~~~~~iv~s~~F~~~i~~~IllN~i~la~e~~ 282 (1643)
. ........................++.+..+ ...+++.+++..++++++++.|++++.+++++|+++++++||
T Consensus 387 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~~~~~~~i~i~i~lnt~~~a~eh~ 465 (1592)
T KOG2301|consen 387 F-SVDSLEDVNSRVELLSAVSYKCPLAWYKSAKNFLIWFCCPIWLKFKQWLRKMVFDPFVILFITICIALNTLFMAMEHY 465 (1592)
T ss_pred h-hhhhhhhhhhhhhhhhhhcccCchHhHhhccceeeeccchHHHHHHHHHHHhhhcceehhhhHHHHhhcccEEEEEEe
Confidence 0 0000000000000000001111222322222 334567889999999999999999999999999999999999
Q ss_pred CCCccchhhhhhhhhHHHHHHHHHHHhhhhcccccchhhhhHHHHHHHHHHHhhheecccccccccccccceeeeehhhh
Q psy12306 283 QQPKWLDSFQEVTNIFFVALFTMEMTLKMYSLGFQEVTNIFFVALFTMEMTLKMYSLGFQGYFVSLFNRFDCFVVIGSIG 362 (1643)
Q Consensus 283 ~~~~~~~~~l~~~n~~~~~lf~~e~~~~~~~~~~~~~~~~~f~~iF~iE~iLKi~a~G~~~Yf~~~wNifD~~vvl~sii 362 (1643)
+++++.+..+.++|.+|+++ |++||.+|++|+|++.||+++||+||+++++.+++
T Consensus 466 ~~~~~~~~~l~~~~~vF~~l-------------------------F~~Em~~ki~al~~~~yF~~~~n~fD~~iv~l~~~ 520 (1592)
T KOG2301|consen 466 EMTKARNYLLYLGNVVFTGL-------------------------FTVEMILKIYALGPRNYFRRGWNIFDLIIVLLSLL 520 (1592)
T ss_pred CCcHHHHHHHHHHHHHHHHH-------------------------HHHHHHHHHHHcCcHHHHhhhcchheEEEEehhhH
Confidence 99999888877776666665 99999999999999999999999999999996666
Q ss_pred hHHhhhccCCCCCcchhhHHHHHhHhhhhhhchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccCC
Q psy12306 363 EMILTRTNIMPPLGVSVLRCVRLLRVFKVTKYWRSLSNLVASLLNSIQSIASLLLLLFLFIVIFALLGMQVFGGKFNFNP 442 (1643)
Q Consensus 363 ~lil~~~~~~~~~~l~vLR~~RlLRi~kl~r~~~~l~~L~~ti~~s~~~l~~l~lll~l~i~iFAilGmqlFgg~~~~~~ 442 (1643)
++. ...+.++++||++|+||++|++|+|++++.+++.+.+|++++++++++++++++|||++|||+|||.++++
T Consensus 521 ~~~-----~~~~~g~svLr~frllRIfkl~k~wp~l~~lv~~i~ns~~~l~~L~l~l~i~i~Ifa~~gmqlFg~~~n~~- 594 (1592)
T KOG2301|consen 521 ELL-----LKNVYGLSVLRSFRLLRIFKLIKSWPTLNDLVKSIFNSGKALGNLVLFLFIFIFIFAAIGMQLFGGVYNLH- 594 (1592)
T ss_pred Hhc-----ccchHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhhHHhhCcccCCC-
Confidence 654 34456899999999999999999999999999999999999999999999999999999999999998876
Q ss_pred CCCCCCCCCCChhhhhhhheecccCCCCCC--------------------------------------C-----CCcccc
Q psy12306 443 TIAKPRSNFDSFWQSLLTVFQQEQKGQEES--------------------------------------P-----PRSIME 479 (1643)
Q Consensus 443 ~~~~~~~nFd~f~~A~vTlF~iltge~w~~--------------------------------------~-----~~~~~~ 479 (1643)
. .+.+||++|++|+++||| +|+|+|.. | ..++.|
T Consensus 595 ~--~~~~~~~~fp~sfl~vFq-lt~e~W~evm~~~~~~~~~~~~~i~Fi~~~l~gn~vvLnlFlAl~~~n~~~~el~~~e 671 (1592)
T KOG2301|consen 595 C--DIHWHFTDFPHSFLSVFQ-ITCEEWTDVMWDCMEAAGQPLCAIYFIAYFLFGNLVVLNLFLALILDNFESDELKKPE 671 (1592)
T ss_pred C--CCccchhhCHHHHHHHHH-HcCCchHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHHHHHHHHhhchhhhcCChh
Confidence 2 334999999999999999 77787753 1 122233
Q ss_pred chhHHhhcCCCc-------------cc----------ccccc--ch--hhhcccc---------------ccccc-----
Q psy12306 480 NEEEEEEGSIIE-------------GE----------EIEDE--SV--REEEDGV---------------KVQLE----- 512 (1643)
Q Consensus 480 ~e~~~~~~~~~~-------------~~----------~~~~~--~~--~~~~~~~---------------~~~~~----- 512 (1643)
+++++++.+... .. +..++ .. .+...++ .+..+
T Consensus 672 ~~~e~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 751 (1592)
T KOG2301|consen 672 QLKEREALQLARSRIPKGLRVVKAFITRPFMAAMRKMPKVRDSAVDHSLEIESNITEDEEFPKRIMKSNGSSRTSGSLSE 751 (1592)
T ss_pred hhhhHHhhhhhhhhhhhhhhhHhhhhcchhhHhhcccchhhhhhhhhchhcccccchhcccccccccccccccccccccc
Confidence 333322211000 00 00000 00 0000000 00000
Q ss_pred ------cCCC-----cccCCchhhhhcccc--------------ccC-ccccccccccCCccCCCCCCceeeeCCCChhh
Q psy12306 513 ------NCDS-----EFYDYSYQADIMNNE--------------DAR-PRRLSEFNTATKKQPIPPASSFFIFSATNPFR 566 (1643)
Q Consensus 513 ------~~~~-----~~~~~~~~~~~~~~~--------------~~~-~~~~~~~~~~~~~~~~~~~~slf~f~~~n~~R 566 (1643)
...+ +......+.+..... ..+ ++...+...+..+.+.++.++.+..+.+| +|
T Consensus 752 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n-~r 830 (1592)
T KOG2301|consen 752 NDDASFISRSTKKAPKENAEQGEIEIRKLQLKRQEAEETRNRIEEDLREFCKKEVCSKYGSQCDGSVDSAKGKSWFN-IR 830 (1592)
T ss_pred hhhhhcccccccccccccccccccchhhhhhhhhhhhhhcccccccchhhhhhccccccccccCccccccccccccc-ce
Confidence 0000 000000000000000 000 11112222333445667888999999999 99
Q ss_pred HHHhhcccccchhHHHHH-------------------------HhhhhchhhhHhhhhhheeeEEEeceecCcccccccC
Q psy12306 567 VWCHWICNHDHFGNAILF-------------------------LGYFDNFFTAVFTIEILLKIISYGFILHDGAFCRSSF 621 (1643)
Q Consensus 567 ~~c~~iv~~~~F~~~Il~-------------------------L~~~d~ift~iF~iE~~lKiia~G~~~~~~~Y~r~~W 621 (1643)
+.|+++|+|.||+.+|++ |.|+|++||.+|++||++||+|+|+.. |+||.|
T Consensus 831 ~~c~~iv~~~~f~~~I~~~illSs~ala~ed~~~~~~~~~~~~L~y~D~~Ft~iFt~Em~lK~ia~Gf~~----y~rn~w 906 (1592)
T KOG2301|consen 831 KTCHIIVEHDWFEAFILTVILISSLALAFEDVRGENRPTINGILEYADYIFTYIFTFEMLLKWIAYGFFF----YFRNAW 906 (1592)
T ss_pred eeeeeeeeeeHHHHHHHHHHHHhhhcccccCcchhhchhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHH----HHhhHH
Confidence 999999999999998876 899999999999999999999999984 999999
Q ss_pred CcccEEEehhhhHHHhhcccchhHHHHHHHhhhhhhhhhhhcccChhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhh
Q psy12306 622 NLLDLLVVIVSVVAIYWNSAAIAFVKILRVLRVLRPLRAINRAKGLKHVVQCVIVAVKTIGNIVLVTCLLQFMFAVIGVQ 701 (1643)
Q Consensus 622 N~lDf~vVi~sli~~~~~~~~ls~lr~lR~lRvLRpLR~i~~~~~lk~vv~~l~~si~~i~nv~lv~~l~~~iFaiiG~~ 701 (1643)
|++||+||++|+++++....+++.+|+||++|+|||||+++|+|+||+|++|++.|+|+|+|+++|++++++
T Consensus 907 ~~lDf~Vv~vslisl~~~~~~~~~ik~lr~lRaLRPLR~i~r~~~mr~Vv~~l~~a~~~I~nv~lV~li~~f-------- 978 (1592)
T KOG2301|consen 907 NWLDFVVVIVSLISLIASLKILSLIKSLRILRALRPLRALSRFPGMRVVVLALFGGLPEIFNVLLVCLIFWF-------- 978 (1592)
T ss_pred hhhhHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHHHHHHH--------
Confidence 999999999999999977667788999999999999999999999999999999999999999988776654
Q ss_pred heeceeeEEEeccccccchhHHHHHHHHHhhhhcccccCCcccccCCCCCCCccccCCceeeecCCCCCCCccccccccC
Q psy12306 702 LFKYVVKCVIVAIKTIGNIMLVTYLLSFMFAVMGVQLFKGKFFQCNDGSKMTKAECHGTYLVFSNGKIDEPSIEVREWSK 781 (1643)
Q Consensus 702 lF~~~~rc~~~~i~~i~~l~~~~~~~~~iFai~Gv~lF~Gk~~~C~d~~~~~~~~C~~~~~~~~~g~~~~~~~~~~~W~~ 781 (1643)
|||++|||+|+|||++|+|++..++.+|.+.|..++++... ...++.|.|
T Consensus 979 ----------------------------iFai~gv~lF~Gkf~~C~d~~~~~~~~~~~~y~~~~~~~~~--~~~~~~w~n 1028 (1592)
T KOG2301|consen 979 ----------------------------IFAIMGVQLFAGKFYACNDPTVGSRLTRTEVYNKYECESLP--RAPRRWWNN 1028 (1592)
T ss_pred ----------------------------HHHHHHHHHHCCCceeccCCCcchhhhhhhhhccCchhhhh--hccceEEec
Confidence 59999999999999999999999999999988877766543 566799999
Q ss_pred CccccccHHHHHHHhhhhcccCCchhhhhhhcccccCCCCcccccccceeeEeEEEeehhhHHHHHHHHHHHHHhhhchh
Q psy12306 782 HRFHFDDVAKAMLTLFTVSTFEGWPGLLYNSIDSNLENHGPIHNYRPIVATYYIIYIIIIAFFMVNIFVGFVIVTFQNEG 861 (1643)
Q Consensus 782 ~~~nFDn~~~a~ltLF~v~T~egW~dimy~~~ds~~~~~~P~~~~~~~~~iyFi~fiiig~ff~lNLfvgvii~~F~~~~ 861 (1643)
+++||||+++||++|||++|+|||+++||.++|+++++.||.++++.++++||++|+++|+||.+|+|+|||++||++++
T Consensus 1029 ~~~nfDnv~~a~laLf~v~tf~GW~~i~~~~ids~~~~~~p~~~~~~~~~~ffvifii~~~ff~lnlFvgvII~nf~~q~ 1108 (1592)
T KOG2301|consen 1029 RKFNFDNVGNAMLALFQVATFKGWPDIMYAAIDSRGVNAQPILESNLYMYLFFVIFIIIGSFFTLNLFVGVIIDNFNQQK 1108 (1592)
T ss_pred cccccccHHHHHHHHHHHHhcCCHHHHHHHHhhhhccCcCCcccccccceeehhhhhhHHhhhheeeeEEEEEechhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhh-ccccchhhhhHHHHhhhcCCCccccCccc--ccceeeeeeeccchhhhhhHHHHhhhheeeeeeccCChhHHHH
Q psy12306 862 EQEYK-NCELDKNQRNCIEFALKAKPVRRYIPKQR--LQYKIWWFVTSQYFEYTIFCLIMINTLTLAMKFYRQPLFYADI 938 (1643)
Q Consensus 862 e~~~~-~~~l~k~q~~~~~~~~~~kp~~~~~P~~~--~r~~~~~iv~s~~Fe~~I~~lIllN~i~la~e~~~~~~~~~~~ 938 (1643)
++++. ++..+++|+.+.+..+++||.++++|+++ +|+++|++|+++.|++.++++|++|+++|++++++|+.+++.+
T Consensus 1109 ~~~~~~~~~~eq~~~~~~~~~l~sk~~~r~ipr~~~~~q~~~~~~v~~~~F~~~i~~li~ln~i~l~~~~~~qs~~~~~~ 1188 (1592)
T KOG2301|consen 1109 GKAGGTFMTEEQKKRLNAAKKLGSKPPQRPIPRPRNKLQGLVFDLVTSQAFDYLIMLLIFLNTIIMMVETYDQSDTYTAI 1188 (1592)
T ss_pred hhhhhhhhhHHHHHHHHHHHHhcCCCCCCCCCCCcchhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccchHHHHHH
Confidence 99888 77788888888999999999999887655 9999999999999999999999999999999999999999999
Q ss_pred HHHHhHHHHHHHHHHHHHHhhhcccccccccccceeehhhHhHHHHHHh-cCCCccccccccCCCCCcccCcceeeeeee
Q psy12306 939 LDKMNMFFTTVFALEFVFKLAAFRFKNYFSDAWNVFDFVIVMGSFIDIF-SDSPPHAAAKATIPGSHEQTSGRLSINFFR 1017 (1643)
Q Consensus 939 l~~in~~ft~iF~iE~iLKi~a~g~~~Yf~~~wNifDfivVi~sii~ii-~~~~~~~~~~~~~~g~~~~~~~~~~i~~lR 1017 (1643)
+..+|.+|+.+|++|+++|++|++++.||+++||+||+++|++|+++.+ ....... .++..+.+++|
T Consensus 1189 l~~in~vft~~Ft~E~vLKiiA~~~~~yf~~~WN~FDfvvvIlSIv~~~ls~~~~~~------------~~~~~~~~~~r 1256 (1592)
T KOG2301|consen 1189 LTILNAVFIVLFTIECILKVIALRFRGYFTSAWNVFDFVVTILSIVGIVLSEAVEKY------------ESSPTLLRFLR 1256 (1592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHhccccchheEeeeeeHhHHHHHHHHHHHhh------------ccchhhHHHHH
Confidence 9999999999999999999999999999999999999999999999998 3322110 02345678999
Q ss_pred ehhhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCCCCCCCCCCHhHHHHhh
Q psy12306 1018 LFRVMRLIKLLSRGEGIRTLLWTFIKSFQALPYVALLIVMLFFIYAVIGMQVFGKIALVFGGGIHRNNNFQTFPQAVLVL 1097 (1643)
Q Consensus 1018 l~RvlRllrLi~~~~~lr~Ll~tl~~S~~~L~~v~lLl~l~~fIfAiiGmqlFg~~~~~~~~~i~~~~NF~tf~~A~ltL 1097 (1643)
++|++|++|++++.+++|+|++|+++|+|+++++++++++++||||++|||+||+++.+ ++++++||+||++||++|
T Consensus 1257 l~rV~R~l~Li~~~~~ir~LL~t~~~Sl~al~~i~lLl~ll~fiYAi~Gmq~Fg~Vkl~---~i~~~~NF~tf~~a~i~L 1333 (1592)
T KOG2301|consen 1257 LFRVGRFLRLIPQAKTIRTLLLTLMMSLPALFFIILLLFLLFFIYAIIGMQLFGYVKLG---GINDHNNFRTFPNSMVVL 1333 (1592)
T ss_pred HHHHHHHHHhccccchhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhheecc---ccCCCcccccchhheeee
Confidence 99999999999999999999999999999999999999999999999999999999865 899999999999999999
Q ss_pred hccccccccHHHHHhhcCCCCCcccCCCCCCCCCCCCCCCcCcc-eeeeeeehhhHHHHHHHHHHHHHHHHHhhhhhhhc
Q psy12306 1098 FRSATGEAWQDIMLDCSNRPSEVKCDAASDGNPTNDDNVSCGSD-IAYPYFISFYVLCSFLIINLFVAVIMDNFDYLTRD 1176 (1643)
Q Consensus 1098 F~v~Tge~W~~im~~~~~~~~~~~Cd~~~~~~~~~~~~~~Cgs~-~a~iyFisf~ii~~fiilNLfVAvIidnF~~~~~~ 1176 (1643)
|||+|||||+++|+||+.++ |.|||+.+.. .++|||+ +|++||+||+++++||++|||||||+|||++++++
T Consensus 1334 Fr~~Tge~W~~im~~~l~s~--p~Cdp~~~~~-----~~dCGn~~~Ai~YF~Sf~iIs~~IvvNLfVAVImeNFs~~t~~ 1406 (1592)
T KOG2301|consen 1334 FRCATGEGWNDIMDDCLNSK--PFCDPDDGNN-----GTDCGNPTVAIIYFVSWILISSYIVVNLFVAVILENFSYATED 1406 (1592)
T ss_pred eehhhhhhHHHHHHHHhcCC--CCCCCCCCCc-----ccccCCCCcceehhhHHHHHHHHHHHHHHHHHHHhhhhhhccc
Confidence 99999999999999999986 4999977642 1299965 99999999999999999999999999999999999
Q ss_pred cc-cCCccchHHHHHHhcccCCCCCcceehhhHHHHHHhcCCCcccCCCCchHHHHHHHHhcCCcccCCCceEhHHHHHH
Q psy12306 1177 WS-ILGPHHLDEFIRLWSEYDPDAKGRIKHLDVVTLLRKISPPLGFGKLCPHRVACKRLVSMNMPLNSDGTVLFNATLFA 1255 (1643)
Q Consensus 1177 ~~-~l~~~~l~~f~~~W~~~Dp~~~g~i~~~~l~~ll~~l~~Plg~~~~~~~~~~~~~l~~~~~p~~~~~~v~f~~~l~~ 1255 (1643)
++ .++++|+|+|+++|++|||++||+|++.+++++++.++|||+++|.||+ +++.||||+.+||+|||+|+|+|
T Consensus 1407 ~s~~Ls~~d~~~F~~vW~~fDpeatg~I~~~~~~~~lr~L~ppL~~~k~~~~-----kli~mdmp~~~gd~V~f~d~L~a 1481 (1592)
T KOG2301|consen 1407 SSEGLSEDDFEKFYEAWDEFDPEATQEIPYSDLSAFLRSLDPPLDLGKPNKR-----KLISMDLPMVSGDRVHCLDILFA 1481 (1592)
T ss_pred ccccCCcccHHHHHHHHHhcChhhheeeeHhhHHHHHHhcCCccccCCCCCc-----eeeeeecCcCCCCeeehhhHHHH
Confidence 88 8999999999999999999999999999999999999999999999987 78999999999999999999999
Q ss_pred HHHhhhhccccCC---cchhHHHHHHHHHHHHhhcCccccccccCCCCCCcceeehhHHHHHHHHHHHHHHHHHHHHhhh
Q psy12306 1256 VVRTSLRIKTEGN---IDDANAELRAVIKKIWKRTSNELLNQVVPPPGGEEEVTVGKFYATFLIQDYFRRFKKRKEQELK 1332 (1643)
Q Consensus 1256 l~~~~l~i~~~g~---~~~~~~~l~~~~~~~w~~~~~~~l~~~~~~~~~~~~~tv~~~~a~~~I~~~fr~f~~~~~~~~~ 1332 (1643)
++|++++|+++++ ..+++++++...+++|+++..+++++..++++ ..+++++|+.+.+++.+|+.++ ++++..
T Consensus 1482 L~~r~l~i~~~~~~~~~~q~e~~~~~~~~~i~~~~i~~~l~~l~~~~~---a~~i~~~y~~~~~~~~~~~~~~-~~~~~~ 1557 (1592)
T KOG2301|consen 1482 LTKRVLGIKKELDKVRELQEEEFLASIPSKISYEPITTTLKRLQEPLS---ATIIQRAYRGYLLRDSDKRSSK-DERDGD 1557 (1592)
T ss_pred HHHHhhcccccccHHHHHHHHHHHhhcchhhccchHHHHHHhhccchh---hHHHHHHHHHHHHHHHHhhccc-cccccc
Confidence 9999999999887 44567788888999999988888888776554 7789999999999999998887 655432
Q ss_pred cCCCCCccchhhhhhhhhcccCChhhhhhhcCC
Q psy12306 1333 DGDKESHNTVTLQAGLRTLHDAGPELKRAISGN 1365 (1643)
Q Consensus 1333 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~g~ 1365 (1643)
+. ...++++.+++++..|+......|.
T Consensus 1558 ~~------~~~~~~~~~~~~~~~p~~~~~~~~~ 1584 (1592)
T KOG2301|consen 1558 FR------GDLLLEKEGNLHDRAPENEFAEKSL 1584 (1592)
T ss_pred cc------cccccccccchhccCcccccCcccc
Confidence 21 2344556666666556555444443
No 2
>KOG2302|consensus
Probab=100.00 E-value=7.9e-146 Score=1295.80 Aligned_cols=1064 Identities=33% Similarity=0.580 Sum_probs=805.2
Q ss_pred cchhHHHHHHHHHHHHHhcCCCCCCCCC-hhhHHHhhhhHHHHHHHHHHHHHHHhhhcccccCcccccccccccceeEEE
Q psy12306 2 FEYLILLTIFANCVALAVYTPYPNSDSN-STNAYLENIEYIFLVIFTVECVMKILAYGFVAHPGAYLRNGWNLLDFTIVV 80 (1643)
Q Consensus 2 F~~~Il~~Il~Nci~la~~~p~~~~d~~-~~~~~l~~~E~iF~~iFt~E~~lKiiA~Gf~~~~~aYLrd~WN~lDf~VVi 80 (1643)
||.+-+++|++|||.|+|++|....+.. .++.+++..|-...++|++||++|++|.| +|++..||.|.||.|||+||+
T Consensus 81 fe~vsmlvillncvtlgmfrpced~~c~s~rc~ilqafddfifaffavemv~kmvalg-ifgkkcylgdtwnrldffiv~ 159 (1956)
T KOG2302|consen 81 FECVSMLVILLNCVTLGMFRPCEDMDCLSDRCKILQAFDDFIFAFFAVEMVLKMVALG-IFGKKCYLGDTWNRLDFFIVM 159 (1956)
T ss_pred HHHHHHHHHHHhhhhhcccccchhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHh-hccccccccCchhhhhhhhee
Confidence 7889999999999999999998766553 47889999988888999999999999999 479999999999999999999
Q ss_pred ec------------------------------------------------------------------------------
Q psy12306 81 IG------------------------------------------------------------------------------ 82 (1643)
Q Consensus 81 ~g------------------------------------------------------------------------------ 82 (1643)
.|
T Consensus 160 agm~eysldlqnvslsairtvrvlrplrainrvpsmrilvtllldtlpmlgnvlllcffvffifgivgvqlwagllrnrc 239 (1956)
T KOG2302|consen 160 AGMVEYSLDLQNVSLSAIRTVRVLRPLRAINRVPSMRILVTLLLDTLPMLGNVLLLCFFVFFIFGIVGVQLWAGLLRNRC 239 (1956)
T ss_pred hhhhhhcccccccchhhhhhhhhhhhhhHhccCchHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 76
Q ss_pred ---------------------------------------------------------------------ccc--------
Q psy12306 83 ---------------------------------------------------------------------GYW-------- 85 (1643)
Q Consensus 83 ---------------------------------------------------------------------~~~-------- 85 (1643)
-+|
T Consensus 240 fl~enf~~~~~v~l~pyyqtee~de~pfics~~rdngm~~c~~ip~lre~g~pc~l~~eay~~~~~~~cvnwnqyynvcr 319 (1956)
T KOG2302|consen 240 FLEENFTIQGDVALPPYYQTEEDDEMPFICSLSRDNGMMGCHEIPPLREQGRPCCLSDEAYDFGASGLCVNWNQYYNVCR 319 (1956)
T ss_pred cchhhccccCcccccccccCcccCCCceeecccccCcccccccCCCccccCCCCccchhhhccCcCcceechHHhhhhcc
Confidence 012
Q ss_pred ---cCCCCcccccCcHHHHHHHHHHhhcccChHHHHHHHHHhcCCceeeehhhhHHHHHHHHHHHHHHHHHHhhhHH--H
Q psy12306 86 ---EGPNNGITNFDNFGLAMLTVFQCITLEGWTDVLYNIEDALGRTWQWTYFVSMVILGAFFVMNLILGVLSGEFSK--E 160 (1643)
Q Consensus 86 ---~~Pn~G~t~FDnf~~A~ltlFqliT~egW~dVmy~~~da~g~~~~~iyFV~~I~iGsFfllNL~LAVI~~~F~~--e 160 (1643)
.||..|-.||||+|+|++.+||++|+|||.||||.+|||. +.++++|||++|+.||||++||.|.||..+|++ +
T Consensus 320 ~g~~nphkgainfdnigyawiaifqvitlegwvdimyyvmdah-sfynfiyfilliivgsffminKOGvviatqfsetkq 398 (1956)
T KOG2302|consen 320 TGSANPHKGAINFDNIGYAWIAIFQVITLEGWVDIMYYVMDAH-SFYNFIYFILLIIVGSFFMINLCLVVIATQFSETKQ 398 (1956)
T ss_pred CCCCCCcCCcccccccchhhhhhheeeeehhhhhhhhhhhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhH
Confidence 3688899999999999999999999999999999999998 678999999999999999999999999999986 3
Q ss_pred HHHHHhhhhHHH---------------------------HHHHHHHHHHHhhhhhhhhcccccCC----------chhhh
Q psy12306 161 REKAKARGDFHK---------------------------LREKQQIEEDLRGYLDWITQAEDIEP----------EGEER 203 (1643)
Q Consensus 161 r~k~~~r~~f~~---------------------------l~~~~q~~~~l~~~~~~~~~~~~~~~----------~~~~~ 203 (1643)
||.+..|++-++ +|+.++. .+.-|..|....+...| .+.+.
T Consensus 399 resqlmreqr~r~lsnstlasfsepgscyeellkyv~hilrkakrr--~l~ly~a~qsr~q~~gp~apap~~pgp~~aes 476 (1956)
T KOG2302|consen 399 RESQLMREQRQRYLSNSTLASFSEPGSCYEELLKYVCHILRKAKRR--ALGLYQALQSRRQALGPEAPAPAKPGPHAAES 476 (1956)
T ss_pred HHHHHHHHHHHHHhcccchhhhCCCchHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhhCCCCCCCCCCCCCCccc
Confidence 333322221110 1110000 01111111111000000 00000
Q ss_pred cccc---------------ccc------------cCC--------------------------CCcccccc---------
Q psy12306 204 ANHH---------------DQK------------NKS--------------------------SSETESAD--------- 221 (1643)
Q Consensus 204 ~~~~---------------~~~------------~~~--------------------------~~~~~s~~--------- 221 (1643)
.|. .++ ..+ .+...|..
T Consensus 477 -vhyhadch~eg~~~ravgsgk~~tspgp~~pg~~~sgp~~l~~p~py~~~ph~l~~~~pc~las~pascpyc~ra~~~e 555 (1956)
T KOG2302|consen 477 -VHYHADCHGEGDEGRAVGSGKCQTSPGPASPGNDHSGPELLPQPSPYDATPHTLVQPIPCTLASDPASCPYCQRADGRE 555 (1956)
T ss_pred -eeecccccCCCcccccccCCccccCCCCCCCCCCCCCCccCCCCCcccccchhhcCCCCCcCCCCCCCCcchhhcCCCc
Confidence 000 000 000 00000000
Q ss_pred -cc----cCCc----------cccchhhhhhc-------cccc-----cccchhhhhhhhccccccchhhhHhHHHHHHH
Q psy12306 222 -RL----EGDE----------GENQESWWRKK-------NKDF-----DRNNRRMRRACRKAVKSQGFYWLIIILVFLNT 274 (1643)
Q Consensus 222 -~~----~~~~----------~~~~~~~~~~~-------~~~~-----~~~~~~~r~~~~~iv~s~~F~~~i~~~IllN~ 274 (1643)
++ .++. +.+....++.. .++- ...|+.++..++++|.|++|..-|+..|++||
T Consensus 556 ~el~~~esgdsdg~gvyeftqd~~hgd~~dp~~~~~gs~~~~aeq~~~g~~wr~~~~klr~ivdskyf~rgimmailvnt 635 (1956)
T KOG2302|consen 556 SELGSTESGDSDGSGVYEFTQDEAHGDGADPSESELGSEEEEAEQWLCGDVWRETRAKLRGIVDSKYFNRGIMMAILVNT 635 (1956)
T ss_pred ccccCCcCCCCCCccccccccccccccCCCCCCcCCCCCcchhhhhHHHHHHHHHHHHHHhhhhhhhcccchhhHHHhhh
Confidence 00 0000 00000000000 0011 12256678889999999999999999999999
Q ss_pred HHHHhhccCCCccchhhhhhhhhHHHHHHHHHHHhhhhcccccchhhhhHHHHHHHHHHHhhheecccccccccccccce
Q psy12306 275 GVLATEHYQQPKWLDSFQEVTNIFFVALFTMEMTLKMYSLGFQEVTNIFFVALFTMEMTLKMYSLGFQGYFVSLFNRFDC 354 (1643)
Q Consensus 275 i~la~e~~~~~~~~~~~l~~~n~~~~~lf~~e~~~~~~~~~~~~~~~~~f~~iF~iE~iLKi~a~G~~~Yf~~~wNifD~ 354 (1643)
+.|.+|++.+++++++.+++.|.+|+.. |..||.+|+.+.|+-+|.+++.|+||.
T Consensus 636 lsmgieyheqpeeltnalei~n~vftsm-------------------------falEm~lkla~~g~f~y~rnPynifdg 690 (1956)
T KOG2302|consen 636 LSMGIEYHEQPEELTNALEIDNNVFTSM-------------------------FALEMDLKLAARGFFRYHRNPYNIFDG 690 (1956)
T ss_pred hhhccccccChHHHhhHHHhhhhhhHHH-------------------------HHHHHHHhhhhccchhccCCCcccCCC
Confidence 9999999999999988887766665555 999999999999999999999999999
Q ss_pred eeeehhhhhHHhhhccCCCCCcchhhHHHHHhHhhhhhhchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy12306 355 FVVIGSIGEMILTRTNIMPPLGVSVLRCVRLLRVFKVTKYWRSLSNLVASLLNSIQSIASLLLLLFLFIVIFALLGMQVF 434 (1643)
Q Consensus 355 ~vvl~sii~lil~~~~~~~~~~l~vLR~~RlLRi~kl~r~~~~l~~L~~ti~~s~~~l~~l~lll~l~i~iFAilGmqlF 434 (1643)
++++++.-|++-... .+++++|.||++|++||.|+.+.+|.-+.++++.+...+.+..++.+++++||++||.+|
T Consensus 691 iiv~is~wEiVgqq~-----GglsvlrtFrllrvlkLvrf~palqrqlvvl~ktmdnvAtfctllmLfififsIlgmh~f 765 (1956)
T KOG2302|consen 691 IIVAISHWEIVGQQD-----GGLSVLRTFRLLRVLKLVRFSPALQRQLVVLMKTMDNVATFCTLLMLFIFIFSILGMHSF 765 (1956)
T ss_pred eEEEEEeeEeecccC-----CCcCCCcHHHHHHHHHHHhhhHHHHHHHHHHHHhccchhhhhhHHHHHHHHHhhhhhhhh
Confidence 999999888743332 478999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccCCC---CCCCCCCCCChhhhhhhheecccCCCCCC---------------------------------------
Q psy12306 435 GGKFNFNPT---IAKPRSNFDSFWQSLLTVFQQEQKGQEES--------------------------------------- 472 (1643)
Q Consensus 435 gg~~~~~~~---~~~~~~nFd~f~~A~vTlF~iltge~w~~--------------------------------------- 472 (1643)
|.||....+ ....|.|||++.||.+|+||++|.|+|+.
T Consensus 766 Gckfs~e~dtGdt~pDrknfdsllwaivTvfqilTqedwn~vLyngmastSswa~lyfvAlmtfGnYvlfnllvailvEg 845 (1956)
T KOG2302|consen 766 GCKFSLETDTGDTVPDRKNFDSLLWAIVTVFQILTQEDWNVVLYNGMASTSSWAPLYFVALMTFGNYVLFNLLVAILVEG 845 (1956)
T ss_pred ccccccccccCCcCCCccccchHHHHHHHHHhhhcccccchhhhcCccccCCcchhHHHHhhhccceeeeccchhhhhhh
Confidence 999986433 23457999999999999999999999973
Q ss_pred -----C---------CC-ccccchhHHh----------h---------------cCC----------Cc-------ccc-
Q psy12306 473 -----P---------PR-SIMENEEEEE----------E---------------GSI----------IE-------GEE- 494 (1643)
Q Consensus 473 -----~---------~~-~~~~~e~~~~----------~---------------~~~----------~~-------~~~- 494 (1643)
+ .+ .....++... | ++. .+ |..
T Consensus 846 Fqaee~s~rs~~qhDe~q~~~~~~e~fdkl~e~ld~d~k~cp~~~t~~~H~~~r~sl~~hl~~~~aasP~~~~t~sp~~~ 925 (1956)
T KOG2302|consen 846 FQAEEDSNRSGLQHDEDQHSQNPEEGFDKLQEGLDSDPKLCPHHHTPNGHLRSRLSLGHHLAHQHAASPHPGETISPDSS 925 (1956)
T ss_pred cccccccccccccccccccccCccccchhhcccccCccccCccccCCCCCcccccCCCCccccccCCCCCCCCCcCCCcc
Confidence 0 00 0000111000 0 000 00 000
Q ss_pred ------c------------ccc-----------------------c----hhhhcc-----------c-cc--cccccCC
Q psy12306 495 ------I------------EDE-----------------------S----VREEED-----------G-VK--VQLENCD 515 (1643)
Q Consensus 495 ------~------------~~~-----------------------~----~~~~~~-----------~-~~--~~~~~~~ 515 (1643)
. ..+ + ..++++ + .+ .+.+...
T Consensus 926 ~~~~~sR~~S~~~s~~~~~d~~~~pS~rss~~~Pw~~s~awtsRrss~~qslkh~~~~ge~~SlLsgeygq~ts~~~~~~ 1005 (1956)
T KOG2302|consen 926 VGSYQSRGISDYSSEYHSYDQDSHPSERSSGDHPWGTSYAWTSRRSSWNQSLKHQDPSGEYESLLSGEYGQSTSQLSAPH 1005 (1956)
T ss_pred cccccccccccccCCCccccCCCCchhccCCCCCCccchhhhhcccchhhhcccCCCcchhhhhhccccccccccccCCC
Confidence 0 000 0 000000 0 00 0000000
Q ss_pred Cccc--CC----------chh--------h----hhccccc--cC----c-----c----ccc--ccccc----------
Q psy12306 516 SEFY--DY----------SYQ--------A----DIMNNED--AR----P-----R----RLS--EFNTA---------- 544 (1643)
Q Consensus 516 ~~~~--~~----------~~~--------~----~~~~~~~--~~----~-----~----~~~--~~~~~---------- 544 (1643)
.+.. ++ ++. . ......+ .+ + + +.. +.+..
T Consensus 1006 ~~~raAPGpraa~~r~~~s~~~ahPr~~~~aa~Rsas~~rdcngrv~s~~k~v~t~~~s~r~d~d~~~eEg~~~k~~r~r 1085 (1956)
T KOG2302|consen 1006 GSRRAAPGPRAASRRRVFSLDVAHPRGSAHAAGRSASTHRDCNGRVTSMSKDVFTQDISTRHDEDEGKEEGQFQKCKRVR 1085 (1956)
T ss_pred CCccCCCCCccccccccccccccCCCcccccccCCCccccccCCccchhhhhhhccCCCCccccccchhcchhHHHHhhh
Confidence 0000 00 000 0 0000000 00 0 0 000 00000
Q ss_pred ---CCccCC----CCCCceeeeCCCChhhHHHhhcccccchhHHHHH-------------------------Hhhhhchh
Q psy12306 545 ---TKKQPI----PPASSFFIFSATNPFRVWCHWICNHDHFGNAILF-------------------------LGYFDNFF 592 (1643)
Q Consensus 545 ---~~~~~~----~~~~slf~f~~~n~~R~~c~~iv~~~~F~~~Il~-------------------------L~~~d~if 592 (1643)
...+|- +...+.++|+|+|+||..|++|+.|+.|+.+|++ |..-+|+|
T Consensus 1086 ~~i~~~kp~~c~~r~~Ws~ylF~pQ~rFR~lc~~ii~hk~Fd~vVl~~IfLNcVtialerp~i~~~s~EriFltlsnyIF 1165 (1956)
T KOG2302|consen 1086 KQITRYKPHWCNLRELWSKYLFSPQNRFRVLCQNIIQHKAFDTVVLFFIFLNCVTIALERPAIVEGSTERIFLTLSNYIF 1165 (1956)
T ss_pred hhhcccCCcchhHHHHHHHHhcCcccHHHHHHHHHHHHhhhhheehhhhhhhhHHHHhcccccccCcceEEEEEecchHH
Confidence 001111 1233779999999999999999999999988765 34456999
Q ss_pred hhHhhhhhheeeEEEeceecCcccccccCCcccEEEehhhhHHHhhc---cc---chhHHHHHHHhhhhhhhhhhhcccC
Q psy12306 593 TAVFTIEILLKIISYGFILHDGAFCRSSFNLLDLLVVIVSVVAIYWN---SA---AIAFVKILRVLRVLRPLRAINRAKG 666 (1643)
Q Consensus 593 t~iF~iE~~lKiia~G~~~~~~~Y~r~~WN~lDf~vVi~sli~~~~~---~~---~ls~lr~lR~lRvLRpLR~i~~~~~ 666 (1643)
|+||.+||.+|++|+|+.++..+|+++.||.||+++|.+|+++++.+ .+ -+.++|+||+||.|||||.|+|.||
T Consensus 1166 taIfV~Em~lKVVALGl~fge~aYl~ssWN~LDgflv~vsviDilvs~asa~g~kILgVlrvLRlLRtlRpLRviSra~g 1245 (1956)
T KOG2302|consen 1166 TAIFVVEMTLKVVALGLYFGEQAYLRSSWNVLDGFLVAVSVIDILVSQASAGGAKILGVLRVLRLLRTLRPLRVISRAPG 1245 (1956)
T ss_pred HHHHHHHHHHHHHhhhhccchHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhHHHHHhhccc
Confidence 99999999999999999999999999999999999999999999754 22 2567899999999999999999999
Q ss_pred hhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhhheeceeeEEEeccccccchhHHHHHHHHHhhhhcccccCCccccc
Q psy12306 667 LKHVVQCVIVAVKTIGNIVLVTCLLQFMFAVIGVQLFKYVVKCVIVAIKTIGNIMLVTYLLSFMFAVMGVQLFKGKFFQC 746 (1643)
Q Consensus 667 lk~vv~~l~~si~~i~nv~lv~~l~~~iFaiiG~~lF~~~~rc~~~~i~~i~~l~~~~~~~~~iFai~Gv~lF~Gk~~~C 746 (1643)
+|.|+.+|+.|+|+|+||++++|-+++ ||+|+|+|||+||||+|
T Consensus 1246 lklVveTL~sSLkpIgnIvliccaffi------------------------------------iFgilgvqLFkgkfy~c 1289 (1956)
T KOG2302|consen 1246 LKLVVETLISSLKPIGNIVLICCAFFI------------------------------------IFGILGVQLFKGKFYHC 1289 (1956)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHH------------------------------------HHHHHHHHHhcccceec
Confidence 999999999999999999988877665 48889999999999999
Q ss_pred CCCC---CCCccccCCceeeecCCCCCCCccccccccCCccccccHHHHHHHhhhhcccCCchhhhhhhcccccCCCCcc
Q psy12306 747 NDGS---KMTKAECHGTYLVFSNGKIDEPSIEVREWSKHRFHFDDVAKAMLTLFTVSTFEGWPGLLYNSIDSNLENHGPI 823 (1643)
Q Consensus 747 ~d~~---~~~~~~C~~~~~~~~~g~~~~~~~~~~~W~~~~~nFDn~~~a~ltLF~v~T~egW~dimy~~~ds~~~~~~P~ 823 (1643)
...+ ..+|++|.. .++.|..+.+||||.++|+++||+++|.+||.+|||++.|+.+++.||+
T Consensus 1290 ~g~dtrnitnKSdc~a---------------a~yRwvrhkyNfdnlgqalmSLFvLaSkDgWv~ImyDgldavavdqqPI 1354 (1956)
T KOG2302|consen 1290 LGVDTRNITNKSDCMA---------------APYRWVRHKYNFDNLGQALMSLFVLASKDGWVNIMYDGLDAVAVDQQPI 1354 (1956)
T ss_pred cccccccccchhhhcc---------------cchhhhhhhcccchHHHHHHHHHHHhcccchhhhhccchhhceeeeecc
Confidence 7543 467889974 3578999999999999999999999999999999999999999999999
Q ss_pred cccccceeeEeEEEeehhhHHHHHHHHHHHHHhhhchhhhhhhc---cccchhhhhHHHHhhhcCCCccccCccccccee
Q psy12306 824 HNYRPIVATYYIIYIIIIAFFMVNIFVGFVIVTFQNEGEQEYKN---CELDKNQRNCIEFALKAKPVRRYIPKQRLQYKI 900 (1643)
Q Consensus 824 ~~~~~~~~iyFi~fiiig~ff~lNLfvgvii~~F~~~~e~~~~~---~~l~k~q~~~~~~~~~~kp~~~~~P~~~~r~~~ 900 (1643)
.|+|||+-+|||+|.+|-+||++|+||||+++||.+-++++..+ ..-.|.-|...+...++.|..-+.--.+.|+.+
T Consensus 1355 ~nhnpwmllYfIsfllIvsffVlnmfVgvvvenfhKcrqhqe~EeArRreEKrLrrlekkrR~Aq~kpyyseyt~~rrlI 1434 (1956)
T KOG2302|consen 1355 LNHNPWMLLYFISFLLIVSFFVLNMFVGVVVENFHKCRQHQEAEEARRREEKRLRRLEKKRRAAQRKPYYSEYTMTRRLI 1434 (1956)
T ss_pred ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccccccHHHHHH
Confidence 99999999999999999999999999999999998755432211 111111111111111223322222234567777
Q ss_pred eeeeeccchhhhhhHHHHhhhheeeeeeccCChhHHHHHHHHhHHHHHHHHHHHHHHhhhcccccccccccceeehhhHh
Q psy12306 901 WWFVTSQYFEYTIFCLIMINTLTLAMKFYRQPLFYADILDKMNMFFTTVFALEFVFKLAAFRFKNYFSDAWNVFDFVIVM 980 (1643)
Q Consensus 901 ~~iv~s~~Fe~~I~~lIllN~i~la~e~~~~~~~~~~~l~~in~~ft~iF~iE~iLKi~a~g~~~Yf~~~wNifDfivVi 980 (1643)
+...++.+-+.++.++|.+|+++|++|||.||.....++.+.|+.|+++|..|+++|+.++|.++||+|.||.+|+.+|+
T Consensus 1435 h~~ctShyld~fit~ii~LnvVtms~ehyqqp~sldealkycny~ft~vfV~EaV~klvafG~rrFfkdrwnqldlaivl 1514 (1956)
T KOG2302|consen 1435 HSKCTSHYLDQFITFIICLNVVTMSEEHYQQPTSLDEALKYCNYRFTAVFVLEAVLKLVAFGERRFFKDRWNQLDLAIVL 1514 (1956)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHhCcccHHHHhhhcceeeeehhHHHHHHHHHHHhHHHHHhhhhhhhhHHHHH
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHh-cCCCccccccccCCCCCcccCcceeeeeeeehhhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12306 981 GSFIDIF-SDSPPHAAAKATIPGSHEQTSGRLSINFFRLFRVMRLIKLLSRGEGIRTLLWTFIKSFQALPYVALLIVMLF 1059 (1643)
Q Consensus 981 ~sii~ii-~~~~~~~~~~~~~~g~~~~~~~~~~i~~lRl~RvlRllrLi~~~~~lr~Ll~tl~~S~~~L~~v~lLl~l~~ 1059 (1643)
.|+.++. .++..+.. ...+...+|+.|++|+.|++||++.+.|+|.|+.|++.++|.+.|+++|+++++
T Consensus 1515 ls~mgitleeie~naa----------lpinptiirimrvlriarvlkllkmatgmralldtvvqalpqvgnlgllfmllf 1584 (1956)
T KOG2302|consen 1515 LSVMGITLEEIEINAA----------LPINPTIIRIMRVLRIARVLKLLKMATGMRALLDTVVQALPQVGNLGLLFMLLF 1584 (1956)
T ss_pred HHHhcccHhheeeccc----------CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhHHHHHHH
Confidence 9999987 33322110 112334478899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcccccccC---CCCCCCCCCCCHhHHHHhhhccccccccHHHHHhhcCCCCCcccCCCCCCCCCCCCCC
Q psy12306 1060 FIYAVIGMQVFGKIALVFG---GGIHRNNNFQTFPQAVLVLFRSATGEAWQDIMLDCSNRPSEVKCDAASDGNPTNDDNV 1136 (1643)
Q Consensus 1060 fIfAiiGmqlFg~~~~~~~---~~i~~~~NF~tf~~A~ltLF~v~Tge~W~~im~~~~~~~~~~~Cd~~~~~~~~~~~~~ 1136 (1643)
||||.+|+.+||+..++++ .++.++..|.||+.|++||||++||++||+||.|+.+ +|+- ..
T Consensus 1585 fiyaalgvelfg~lec~e~npceglsrhatf~nfgmafltlfrvstgdnwngimkdtlr-----dc~~----------e~ 1649 (1956)
T KOG2302|consen 1585 FIYAALGVELFGKLECNEENPCEGLSRHATFENFGMAFLTLFRVSTGDNWNGIMKDTLR-----DCTH----------EE 1649 (1956)
T ss_pred HHHHHHHHHHhcccccCCCCCccccccccchhhhchHhhhheeeccCCcccchhhhhHh-----hccc----------ch
Confidence 9999999999999875433 4678999999999999999999999999999999874 5643 22
Q ss_pred CcCcc-eeeeeeehhhHHHHHHHHHHHHHHHHHhhhhhhhc
Q psy12306 1137 SCGSD-IAYPYFISFYVLCSFLIINLFVAVIMDNFDYLTRD 1176 (1643)
Q Consensus 1137 ~Cgs~-~a~iyFisf~ii~~fiilNLfVAvIidnF~~~~~~ 1176 (1643)
.|-++ ++.+||++|.+...|+++|+.|||+|.+.++.++|
T Consensus 1650 ~cls~~~sp~yfvsfvltaqfvlvnvvvavlmkhleesnke 1690 (1956)
T KOG2302|consen 1650 SCLSQFVSPLYFVSFVLTAQFVLVNVVVAVLMKHLEESNKE 1690 (1956)
T ss_pred hhhhhhccchhhhhhhhhhhhHHHHHHHHHHHHHHHhhchh
Confidence 57676 67899999999999999999999999999876554
No 3
>KOG2301|consensus
Probab=100.00 E-value=9.1e-114 Score=1139.54 Aligned_cols=1113 Identities=24% Similarity=0.366 Sum_probs=770.5
Q ss_pred cchhhhhhhhccccccchhhhHhHHHHHHHHHHHhhccCCCccchhhhhhhhhHHHHHHHHHHHhhhhcccccchhhhhH
Q psy12306 245 NNRRMRRACRKAVKSQGFYWLIIILVFLNTGVLATEHYQQPKWLDSFQEVTNIFFVALFTMEMTLKMYSLGFQEVTNIFF 324 (1643)
Q Consensus 245 ~~~~~r~~~~~iv~s~~F~~~i~~~IllN~i~la~e~~~~~~~~~~~l~~~n~~~~~lf~~e~~~~~~~~~~~~~~~~~f 324 (1643)
..++.|+.+.+++.|++|+.+++.+|+.|+++++++ +.+++. + ..|+.|
T Consensus 61 ~~n~~R~~~i~i~~~~~f~~~i~~ti~~ncv~~~~~--~~~~~~----~-------------------------~~e~~f 109 (1592)
T KOG2301|consen 61 PFNPIRSSAIKILVHPWFSLFILATIIANCVVMAMT--PLNYWI----L-------------------------AAEYTF 109 (1592)
T ss_pred cccchhhheeeeeccccHHHHHHHHHHHHeeeeccC--CCCcch----h-------------------------hcceeh
Confidence 357889999999999999999999999999999987 222222 2 235666
Q ss_pred HHHHHHHHHHhhheecc----cccccccccccceeeeehhhhhHHhhhccCCCCCcchhhHHHHHhHhhhhhhchHhHHH
Q psy12306 325 VALFTMEMTLKMYSLGF----QGYFVSLFNRFDCFVVIGSIGEMILTRTNIMPPLGVSVLRCVRLLRVFKVTKYWRSLSN 400 (1643)
Q Consensus 325 ~~iF~iE~iLKi~a~G~----~~Yf~~~wNifD~~vvl~sii~lil~~~~~~~~~~l~vLR~~RlLRi~kl~r~~~~l~~ 400 (1643)
+.+|+.|.++|+.+.|+ ..|.+++||.+|+++++..++..++... .++.+|.+|++|.+|++...++++.
T Consensus 110 ~~i~~~E~~~ki~a~G~~~~~~sylr~~wn~ldf~vvv~~~~s~~~~~~------~~~~lR~frvlr~lk~vs~~~~lk~ 183 (1592)
T KOG2301|consen 110 LGIFTFESVVKILARGFFRCDFSYLRDPWNWLDFVVIVIGLLSTLLHLY------NIRALRTFRVLRALKLVSGIPGLKT 183 (1592)
T ss_pred hhHHHHHHHHHHHHHHhhcCCCcccCCccccccEEEeeeehHHHhcccc------chhhhccccccchhhhccCCCChHH
Confidence 77799999999999987 4899999999999999999888776554 3899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccC----C----------------------------------
Q psy12306 401 LVASLLNSIQSIASLLLLLFLFIVIFALLGMQVFGGKFNFN----P---------------------------------- 442 (1643)
Q Consensus 401 L~~ti~~s~~~l~~l~lll~l~i~iFAilGmqlFgg~~~~~----~---------------------------------- 442 (1643)
.+.++.+++..+..++++.++.+.+||++|+++|.|+.+.. +
T Consensus 184 ~~~~ii~~~~~l~~~~~l~~f~~~ifa~igl~lf~g~l~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~C~~ 263 (1592)
T KOG2301|consen 184 RVGALIKASKQLVDVVILTFFFLSVFALIGLQLFMGRLTYKCVQPKPNNVTINDRAIPDTYCAPEGIGGLLCGNNYVCMQ 263 (1592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHhhhcCCCCCceeccccCcccccCcCCCCccccCCccchhh
Confidence 99999999999999999999999999999999999986531 0
Q ss_pred ---CCCCCCCCCCChhhhhhhheecccCCCCCC------CCC--------------------------ccccchhHHhhc
Q psy12306 443 ---TIAKPRSNFDSFWQSLLTVFQQEQKGQEES------PPR--------------------------SIMENEEEEEEG 487 (1643)
Q Consensus 443 ---~~~~~~~nFd~f~~A~vTlF~iltge~w~~------~~~--------------------------~~~~~e~~~~~~ 487 (1643)
.++...++||+|+||++|+||++|.|||+. |+. -+.+.+|+.++.
T Consensus 264 ~~~~p~~g~t~Fd~f~~a~lt~f~~~tqe~w~~~~y~~~~a~g~~~~~~Fv~~i~lgsf~~~nl~l~vls~~f~e~r~~~ 343 (1592)
T KOG2301|consen 264 LGANPNGGYTSFDSFGWAFLTVFRLMTQEGWEDLLYLTLDALGKWYMLFFVTLIFLGSFYVKNLFLAVLSMAFAEERVAF 343 (1592)
T ss_pred cCCCCCCCcccchHHHHHHHHHHHHHhhcchHHHHHHHHHhcccceeEeeehhhhhccHHHHHHHHHHhhHHHHHHHHHH
Confidence 011224899999999999999999999986 110 011111111110
Q ss_pred CCCc--cccccccch---hhhc-------cccccccccCCCcccCCchhhhhccccccCccccccccccCCc---cCCCC
Q psy12306 488 SIIE--GEEIEDESV---REEE-------DGVKVQLENCDSEFYDYSYQADIMNNEDARPRRLSEFNTATKK---QPIPP 552 (1643)
Q Consensus 488 ~~~~--~~~~~~~~~---~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 552 (1643)
.... .....++.. .+.. +.....++............++ ...+.+...+...+... .....
T Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (1592)
T KOG2301|consen 344 EEEWQFKEPRFQEAFEELLEKYEDGIFLAEADGSVESGPKSKLFSVDSLED----VNSRVELLSAVSYKCPLAWYKSAKN 419 (1592)
T ss_pred HhhhhhhchHHHHHHHHHHHHHHHHHHHHHHhhhhccccchhhhhhhhhhh----hhhhhhhhhhhcccCchHhHhhccc
Confidence 0000 000000000 0000 0000000000000000000000 00000111111000000 00011
Q ss_pred CCceeeeCCCChhhHHHhhcccccchhHHHHH-----------------------HhhhhchhhhHhhhhhheeeEEEec
Q psy12306 553 ASSFFIFSATNPFRVWCHWICNHDHFGNAILF-----------------------LGYFDNFFTAVFTIEILLKIISYGF 609 (1643)
Q Consensus 553 ~~slf~f~~~n~~R~~c~~iv~~~~F~~~Il~-----------------------L~~~d~ift~iF~iE~~lKiia~G~ 609 (1643)
.....+-+++-++|++|+.+|.++.|+++|.+ +.+++.+|+++|+.||.+|++|+|+
T Consensus 420 ~~i~~~~~~~~~~~~~~~~~v~~~~~~~~i~i~i~lnt~~~a~eh~~~~~~~~~~l~~~~~vF~~lF~~Em~~ki~al~~ 499 (1592)
T KOG2301|consen 420 FLIWFCCPIWLKFKQWLRKMVFDPFVILFITICIALNTLFMAMEHYEMTKARNYLLYLGNVVFTGLFTVEMILKIYALGP 499 (1592)
T ss_pred eeeeccchHHHHHHHHHHHhhhcceehhhhHHHHhhcccEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 12333445566799999999999999987765 7889999999999999999999998
Q ss_pred eecCcccccccCCcccEEEehhhhHHHhhcccchhHHHHHHHhhhhhhhhhhhcccChhHHHHHHHHHHHHhhhHHHHHH
Q psy12306 610 ILHDGAFCRSSFNLLDLLVVIVSVVAIYWNSAAIAFVKILRVLRVLRPLRAINRAKGLKHVVQCVIVAVKTIGNIVLVTC 689 (1643)
Q Consensus 610 ~~~~~~Y~r~~WN~lDf~vVi~sli~~~~~~~~ls~lr~lR~lRvLRpLR~i~~~~~lk~vv~~l~~si~~i~nv~lv~~ 689 (1643)
. .||+++||++|++||+.+++... ..+.-.+..||.+|.||..|+++.+|.++..+..+..++++++|++++++
T Consensus 500 ~----~yF~~~~n~fD~~iv~l~~~~~~--~~~~~g~svLr~frllRIfkl~k~wp~l~~lv~~i~ns~~~l~~L~l~l~ 573 (1592)
T KOG2301|consen 500 R----NYFRRGWNIFDLIIVLLSLLELL--LKNVYGLSVLRSFRLLRIFKLIKSWPTLNDLVKSIFNSGKALGNLVLFLF 573 (1592)
T ss_pred H----HHHhhhcchheEEEEehhhHHhc--ccchHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 7 99999999999999997777766 22333466778888888888999999999999999999999988766554
Q ss_pred HHHHHHHHhhhhheeceeeEEEeccccccchhHHHHHHHHHhhhhcccccCCcccccCCCCCCCccccCCceeeecCCCC
Q psy12306 690 LLQFMFAVIGVQLFKYVVKCVIVAIKTIGNIMLVTYLLSFMFAVMGVQLFKGKFFQCNDGSKMTKAECHGTYLVFSNGKI 769 (1643)
Q Consensus 690 l~~~iFaiiG~~lF~~~~rc~~~~i~~i~~l~~~~~~~~~iFai~Gv~lF~Gk~~~C~d~~~~~~~~C~~~~~~~~~g~~ 769 (1643)
++ ++|||++|||+|+|++..| - .
T Consensus 574 i~------------------------------------i~Ifa~~gmqlFg~~~n~~-~---------~----------- 596 (1592)
T KOG2301|consen 574 IF------------------------------------IFIFAAIGMQLFGGVYNLH-C---------D----------- 596 (1592)
T ss_pred HH------------------------------------HHHHHHhhHHhhCcccCCC-C---------C-----------
Confidence 44 4568888888888877543 1 0
Q ss_pred CCCccccccccCCccccccHHHHHHHhhhhcccCCchhhhhhhcccccCCCCcccccccceeeEeEEEeehhhHHHHHHH
Q psy12306 770 DEPSIEVREWSKHRFHFDDVAKAMLTLFTVSTFEGWPGLLYNSIDSNLENHGPIHNYRPIVATYYIIYIIIIAFFMVNIF 849 (1643)
Q Consensus 770 ~~~~~~~~~W~~~~~nFDn~~~a~ltLF~v~T~egW~dimy~~~ds~~~~~~P~~~~~~~~~iyFi~fiiig~ff~lNLf 849 (1643)
+.+|||++++|++++|| .|+|+|.|+||+++.+. ..++.++||+++.++|+.++||+|
T Consensus 597 ------------~~~~~~~fp~sfl~vFq-lt~e~W~evm~~~~~~~---------~~~~~~i~Fi~~~l~gn~vvLnlF 654 (1592)
T KOG2301|consen 597 ------------IHWHFTDFPHSFLSVFQ-ITCEEWTDVMWDCMEAA---------GQPLCAIYFIAYFLFGNLVVLNLF 654 (1592)
T ss_pred ------------CccchhhCHHHHHHHHH-HcCCchHHHHHHHHHHh---------ccchhhhHHHHHHHHHHHHHHHHH
Confidence 01699999999999999 89999999999999885 235678999999999999999999
Q ss_pred HHHHHHhhhchh----hh--hhhcc------------c----cc--------h--------hhh----------------
Q psy12306 850 VGFVIVTFQNEG----EQ--EYKNC------------E----LD--------K--------NQR---------------- 875 (1643)
Q Consensus 850 vgvii~~F~~~~----e~--~~~~~------------~----l~--------k--------~q~---------------- 875 (1643)
+|++.+||.... |+ ++.+. . .. + .+.
T Consensus 655 lAl~~~n~~~~el~~~e~~~e~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 734 (1592)
T KOG2301|consen 655 LALILDNFESDELKKPEQLKEREALQLARSRIPKGLRVVKAFITRPFMAAMRKMPKVRDSAVDHSLEIESNITEDEEFPK 734 (1592)
T ss_pred HHHHHhhchhhhcCChhhhhhHHhhhhhhhhhhhhhhhHhhhhcchhhHhhcccchhhhhhhhhchhcccccchhccccc
Confidence 999999995321 00 00000 0 00 0 000
Q ss_pred --------------------------------hHH------HH---hhh---------------------c-------CC
Q psy12306 876 --------------------------------NCI------EF---ALK---------------------A-------KP 886 (1643)
Q Consensus 876 --------------------------------~~~------~~---~~~---------------------~-------kp 886 (1643)
++. +. ..+ . +|
T Consensus 735 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 814 (1592)
T KOG2301|consen 735 RIMKSNGSSRTSGSLSENDDASFISRSTKKAPKENAEQGEIEIRKLQLKRQEAEETRNRIEEDLREFCKKEVCSKYGSQC 814 (1592)
T ss_pred ccccccccccccccccchhhhhcccccccccccccccccccchhhhhhhhhhhhhhcccccccchhhhhhcccccccccc
Confidence 000 00 000 0 00
Q ss_pred Ccc------ccCcccccceeeeeeeccchhhhhhHHHHhhhheeeeeecc--CChhHHHHHHHHhHHHHHHHHHHHHHHh
Q psy12306 887 VRR------YIPKQRLQYKIWWFVTSQYFEYTIFCLIMINTLTLAMKFYR--QPLFYADILDKMNMFFTTVFALEFVFKL 958 (1643)
Q Consensus 887 ~~~------~~P~~~~r~~~~~iv~s~~Fe~~I~~lIllN~i~la~e~~~--~~~~~~~~l~~in~~ft~iF~iE~iLKi 958 (1643)
... ..+.| .|+.|+.+|.+.+|+.+|..+|++++++++.++.. +....+.++.+.+++||.+|++|+++|+
T Consensus 815 ~~~~~~~~~~~~~n-~r~~c~~iv~~~~f~~~I~~~illSs~ala~ed~~~~~~~~~~~~L~y~D~~Ft~iFt~Em~lK~ 893 (1592)
T KOG2301|consen 815 DGSVDSAKGKSWFN-IRKTCHIIVEHDWFEAFILTVILISSLALAFEDVRGENRPTINGILEYADYIFTYIFTFEMLLKW 893 (1592)
T ss_pred Cccccccccccccc-ceeeeeeeeeeeHHHHHHHHHHHHhhhcccccCcchhhchhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 000 01234 88899999999999999999999999999999654 4555788999999999999999999999
Q ss_pred hhcccccccccccceeehhhHhHHHHHHhcCCCccccccccCCCCCcccCcceeeeeeeehhhhHHHHHhhcchhHHHHH
Q psy12306 959 AAFRFKNYFSDAWNVFDFVIVMGSFIDIFSDSPPHAAAKATIPGSHEQTSGRLSINFFRLFRVMRLIKLLSRGEGIRTLL 1038 (1643)
Q Consensus 959 ~a~g~~~Yf~~~wNifDfivVi~sii~ii~~~~~~~~~~~~~~g~~~~~~~~~~i~~lRl~RvlRllrLi~~~~~lr~Ll 1038 (1643)
+|+|...||+|.||++||+||++|++.++.... ....++.+|++|++|++|.+++.+++|+++
T Consensus 894 ia~Gf~~y~rn~w~~lDf~Vv~vslisl~~~~~-----------------~~~~ik~lr~lRaLRPLR~i~r~~~mr~Vv 956 (1592)
T KOG2301|consen 894 IAYGFFFYFRNAWNWLDFVVVIVSLISLIASLK-----------------ILSLIKSLRILRALRPLRALSRFPGMRVVV 956 (1592)
T ss_pred HHhHHHHHHhhHHhhhhHHHhhhHHHHHHHhhh-----------------hhhHHHHHHHHHHHHHHHHHHHccccchhH
Confidence 999998999999999999999999999884321 122468899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCC----------------------------CCCCCCCCCCH
Q psy12306 1039 WTFIKSFQALPYVALLIVMLFFIYAVIGMQVFGKIALVFGG----------------------------GIHRNNNFQTF 1090 (1643)
Q Consensus 1039 ~tl~~S~~~L~~v~lLl~l~~fIfAiiGmqlFg~~~~~~~~----------------------------~i~~~~NF~tf 1090 (1643)
.+++.+++.++|++++.++++++||++|+|+|++....+.+ ..+.+.|||++
T Consensus 957 ~~l~~a~~~I~nv~lV~li~~fiFai~gv~lF~Gkf~~C~d~~~~~~~~~~~~y~~~~~~~~~~~~~~~w~n~~~nfDnv 1036 (1592)
T KOG2301|consen 957 LALFGGLPEIFNVLLVCLIFWFIFAIMGVQLFAGKFYACNDPTVGSRLTRTEVYNKYECESLPRAPRRWWNNRKFNFDNV 1036 (1592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCceeccCCCcchhhhhhhhhccCchhhhhhccceEEeccccccccH
Confidence 99999999999999999999999999999999764321111 12346699999
Q ss_pred hHHHHhhhccccccccHHHHHhhcCCCCCcccCCCCCCCCCCCCCCCcCcceeeeeeehhhHHHHHHHHHHHHHHHHHhh
Q psy12306 1091 PQAVLVLFRSATGEAWQDIMLDCSNRPSEVKCDAASDGNPTNDDNVSCGSDIAYPYFISFYVLCSFLIINLFVAVIMDNF 1170 (1643)
Q Consensus 1091 ~~A~ltLF~v~Tge~W~~im~~~~~~~~~~~Cd~~~~~~~~~~~~~~Cgs~~a~iyFisf~ii~~fiilNLfVAvIidnF 1170 (1643)
++|+++||+++|+|||.++|+..++..+ + +.+|.. -.+...++||+.|+++++|+.+|+|||+|++||
T Consensus 1037 ~~a~laLf~v~tf~GW~~i~~~~ids~~-~------~~~p~~-----~~~~~~~~ffvifii~~~ff~lnlFvgvII~nf 1104 (1592)
T KOG2301|consen 1037 GNAMLALFQVATFKGWPDIMYAAIDSRG-V------NAQPIL-----ESNLYMYLFFVIFIIIGSFFTLNLFVGVIIDNF 1104 (1592)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHhhhhc-c------CcCCcc-----cccccceeehhhhhhHHhhhheeeeEEEEEech
Confidence 9999999999999999999999987752 1 122221 123467799999999999999999999999999
Q ss_pred hhhhhccccCCccchHHHHHHhcccCCCCCccee--------hhhHHHHHHhcCCCcccCCCCchHHHHHHHHhcCCccc
Q psy12306 1171 DYLTRDWSILGPHHLDEFIRLWSEYDPDAKGRIK--------HLDVVTLLRKISPPLGFGKLCPHRVACKRLVSMNMPLN 1242 (1643)
Q Consensus 1171 ~~~~~~~~~l~~~~l~~f~~~W~~~Dp~~~g~i~--------~~~l~~ll~~l~~Plg~~~~~~~~~~~~~l~~~~~p~~ 1242 (1643)
++..+..-. +....|+.++...++.-.++..-+ ......- ..-++++.+. +....|-..+.|.+-.+
T Consensus 1105 ~~q~~~~~~-~~~~~eq~~~~~~~~~l~sk~~~r~ipr~~~~~q~~~~~-~v~~~~F~~~---i~~li~ln~i~l~~~~~ 1179 (1592)
T KOG2301|consen 1105 NQQKGKAGG-TFMTEEQKKRLNAAKKLGSKPPQRPIPRPRNKLQGLVFD-LVTSQAFDYL---IMLLIFLNTIIMMVETY 1179 (1592)
T ss_pred hhhchhhhh-hhhhHHHHHHHHHHHHhcCCCCCCCCCCCcchhhhHHHH-HHhhhHHHHH---HHHHHHHHHHHHHHhhc
Confidence 976543211 123334443333333222111100 0000000 0001111110 00111112222222211
Q ss_pred CCCceEhHHHHHH--HHHh-------hhhccccCCcchhHHHHHHHHHHHHhhcCccccccccCCCCCCcceeehhH---
Q psy12306 1243 SDGTVLFNATLFA--VVRT-------SLRIKTEGNIDDANAELRAVIKKIWKRTSNELLNQVVPPPGGEEEVTVGKF--- 1310 (1643)
Q Consensus 1243 ~~~~v~f~~~l~~--l~~~-------~l~i~~~g~~~~~~~~l~~~~~~~w~~~~~~~l~~~~~~~~~~~~~tv~~~--- 1310 (1643)
+..-.++.++.. ++-+ .+|+-.. ..+.++...|+. +|.++.. ++-..+.+..+
T Consensus 1180 -~qs~~~~~~l~~in~vft~~Ft~E~vLKiiA~--------~~~~yf~~~WN~-----FDfvvvI-lSIv~~~ls~~~~~ 1244 (1592)
T KOG2301|consen 1180 -DQSDTYTAILTILNAVFIVLFTIECILKVIAL--------RFRGYFTSAWNV-----FDFVVTI-LSIVGIVLSEAVEK 1244 (1592)
T ss_pred -cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------hhhHhccccchh-----eEeeeee-HhHHHHHHHHHHHh
Confidence 111223322111 1111 1121111 134556677775 5654432 22222222211
Q ss_pred -HHHHHHHHHHHHHHHHHHHhhhcCCCCCccchhhhhhhhhcccCChhhh------------hhh-----cCCcccccCC
Q psy12306 1311 -YATFLIQDYFRRFKKRKEQELKDGDKESHNTVTLQAGLRTLHDAGPELK------------RAI-----SGNLEELVDD 1372 (1643)
Q Consensus 1311 -~a~~~I~~~fr~f~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~------------~~i-----~g~~~~~~~~ 1372 (1643)
.....-.++.|.++..+..++-. +..+++..|+|+..+.|.+. ||+ +|.+.- +
T Consensus 1245 ~~~~~~~~~~~rl~rV~R~l~Li~------~~~~ir~LL~t~~~Sl~al~~i~lLl~ll~fiYAi~Gmq~Fg~Vkl--~- 1315 (1592)
T KOG2301|consen 1245 YESSPTLLRFLRLFRVGRFLRLIP------QAKTIRTLLLTLMMSLPALFFIILLLFLLFFIYAIIGMQLFGYVKL--G- 1315 (1592)
T ss_pred hccchhhHHHHHHHHHHHHHHhcc------ccchhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhheec--c-
Confidence 11222223334444444433211 12346667777766666543 454 455431 1
Q ss_pred CCCCCcccCCc-------cc--ccCCchhHhhhcCCC-Cc-----------cc-----------------hhhhhhHHHH
Q psy12306 1373 NPEPSHRVSPT-------NS--VDYLPYTSIQLNGMN-DS-----------SK-----------------MNNIINLFVA 1414 (1643)
Q Consensus 1373 ~~~~~~~~~~~-------~f--~tge~w~~i~~~~~~-~~-----------~~-----------------~~l~~nlfva 1414 (1643)
..+.|.+.+| || +|||+|++||.+|++ ++ +| .++++|||||
T Consensus 1316 -~i~~~~NF~tf~~a~i~LFr~~Tge~W~~im~~~l~s~p~Cdp~~~~~~~dCGn~~~Ai~YF~Sf~iIs~~IvvNLfVA 1394 (1592)
T KOG2301|consen 1316 -GINDHNNFRTFPNSMVVLFRCATGEGWNDIMDDCLNSKPFCDPDDGNNGTDCGNPTVAIIYFVSWILISSYIVVNLFVA 1394 (1592)
T ss_pred -ccCCCcccccchhheeeeeehhhhhhHHHHHHHHhcCCCCCCCCCCCcccccCCCCcceehhhHHHHHHHHHHHHHHHH
Confidence 1222323333 34 899999999998873 21 11 2578999999
Q ss_pred hhhccccccccccc-cCCCCchhHHhhhcccCCccccCcccccchHhhhhhcCCCCCCCCCCccccccc-----------
Q psy12306 1415 VIMDNFDYLTRDWS-ILGPHHLDEFIRLWSEYDPDAKGRIKHLDVVTLLRKISPPLGFGKLCPHRVACE----------- 1482 (1643)
Q Consensus 1415 vimdnf~~~~r~~s-ilg~hhldef~~~w~~ydp~a~~~i~~~d~~~ll~~~~~plg~gk~cp~r~a~~----------- 1482 (1643)
||||||+|+||||| +|||||+|+|+++|++|||+|||||||.||+++||.++||||+||.||||.-|-
T Consensus 1395 VImeNFs~~t~~~s~~Ls~~d~~~F~~vW~~fDpeatg~I~~~~~~~~lr~L~ppL~~~k~~~~kli~mdmp~~~gd~V~ 1474 (1592)
T KOG2301|consen 1395 VILENFSYATEDSSEGLSEDDFEKFYEAWDEFDPEATQEIPYSDLSAFLRSLDPPLDLGKPNKRKLISMDLPMVSGDRVH 1474 (1592)
T ss_pred HHHhhhhhhcccccccCCcccHHHHHHHHHhcChhhheeeeHhhHHHHHHhcCCccccCCCCCceeeeeecCcCCCCeee
Confidence 99999999999998 999999999999999999999999999999999999999999999999977762
Q ss_pred ------------------------------------------------------cccccccchhhhhhhHHHHHhhhhhc
Q psy12306 1483 ------------------------------------------------------EEVTVGKFYATFLIQDYFRRFKKRKE 1508 (1643)
Q Consensus 1483 ------------------------------------------------------~~~tvgk~y~~~~i~~~~r~~~~~~~ 1508 (1643)
.+++|||+|+++++|+|+|+.++ +|
T Consensus 1475 f~d~L~aL~~r~l~i~~~~~~~~~~q~e~~~~~~~~~i~~~~i~~~l~~l~~~~~a~~i~~~y~~~~~~~~~~~~~~-~~ 1553 (1592)
T KOG2301|consen 1475 CLDILFALTKRVLGIKKELDKVRELQEEEFLASIPSKISYEPITTTLKRLQEPLSATIIQRAYRGYLLRDSDKRSSK-DE 1553 (1592)
T ss_pred hhhHHHHHHHHhhcccccccHHHHHHHHHHHhhcchhhccchHHHHHHhhccchhhHHHHHHHHHHHHHHHHhhccc-cc
Confidence 37999999999999999999999 87
Q ss_pred cccccCCCCCCchhhhhhhhccccccCcccccccCCCccccc
Q psy12306 1509 QELKDGDKESHNTVTLQAGLRTLHDAGPELKRAISGNLEELV 1550 (1643)
Q Consensus 1509 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~ 1550 (1643)
+....+ ...++++.+++|+..|+.+++.++++++..
T Consensus 1554 ~~~~~~------~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 1589 (1592)
T KOG2301|consen 1554 RDGDFR------GDLLLEKEGNLHDRAPENEFAEKSLANAED 1589 (1592)
T ss_pred cccccc------cccccccccchhccCcccccCccccccccc
Confidence 643311 447789999999999999999999887553
No 4
>KOG2302|consensus
Probab=100.00 E-value=3.9e-82 Score=752.70 Aligned_cols=793 Identities=26% Similarity=0.434 Sum_probs=549.2
Q ss_pred hhhhhhhhccccccchhhhHhHHHHHHHHHHHhhccCC----CccchhhhhhhhhHHHHHHHHHHHhhhhcccccchhhh
Q psy12306 247 RRMRRACRKAVKSQGFYWLIIILVFLNTGVLATEHYQQ----PKWLDSFQEVTNIFFVALFTMEMTLKMYSLGFQEVTNI 322 (1643)
Q Consensus 247 ~~~r~~~~~iv~s~~F~~~i~~~IllN~i~la~e~~~~----~~~~~~~l~~~n~~~~~lf~~e~~~~~~~~~~~~~~~~ 322 (1643)
.+-|.+|-++|-++||+.+.+++|++|++.+.+-..-. .+..-..+.. .+-
T Consensus 66 trprswclr~vcnpwfe~vsmlvillncvtlgmfrpced~~c~s~rc~ilqa-------------------------fdd 120 (1956)
T KOG2302|consen 66 TRPRSWCLRMVCNPWFECVSMLVILLNCVTLGMFRPCEDMDCLSDRCKILQA-------------------------FDD 120 (1956)
T ss_pred CCchhHHHHhhccHHHHHHHHHHHHHhhhhhcccccchhcccchhhhhHHHH-------------------------HHH
Confidence 44578899999999999999999999999998854221 1111222222 222
Q ss_pred hHHHHHHHHHHHhhheecc---cccccccccccceeeeehhhhhHHhhhccCCCCCcchhhHHHHHhHhhhhhhchHhHH
Q psy12306 323 FFVALFTMEMTLKMYSLGF---QGYFVSLFNRFDCFVVIGSIGEMILTRTNIMPPLGVSVLRCVRLLRVFKVTKYWRSLS 399 (1643)
Q Consensus 323 ~f~~iF~iE~iLKi~a~G~---~~Yf~~~wNifD~~vvl~sii~lil~~~~~~~~~~l~vLR~~RlLRi~kl~r~~~~l~ 399 (1643)
+..++|.+||++|++|+|. +.|+-+.||++||+||+.+.+|.-+...+ ..++..|.+|+||++|.+...++||
T Consensus 121 fifaffavemv~kmvalgifgkkcylgdtwnrldffiv~agm~eysldlqn----vslsairtvrvlrplrainrvpsmr 196 (1956)
T KOG2302|consen 121 FIFAFFAVEMVLKMVALGIFGKKCYLGDTWNRLDFFIVMAGMVEYSLDLQN----VSLSAIRTVRVLRPLRAINRVPSMR 196 (1956)
T ss_pred HHHHHHHHHHHHHHHHHhhccccccccCchhhhhhhheehhhhhhcccccc----cchhhhhhhhhhhhhhHhccCchHH
Confidence 3345699999999999976 68999999999999999999887665433 4588999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccc----------------------CCC--------------
Q psy12306 400 NLVASLLNSIQSIASLLLLLFLFIVIFALLGMQVFGGKFNF----------------------NPT-------------- 443 (1643)
Q Consensus 400 ~L~~ti~~s~~~l~~l~lll~l~i~iFAilGmqlFgg~~~~----------------------~~~-------------- 443 (1643)
.|+..++.+++.+++++++.|+++|||+|+|+|+.+|.... +.+
T Consensus 197 ilvtllldtlpmlgnvlllcffvffifgivgvqlwagllrnrcfl~enf~~~~~v~l~pyyqtee~de~pfics~~rdng 276 (1956)
T KOG2302|consen 197 ILVTLLLDTLPMLGNVLLLCFFVFFIFGIVGVQLWAGLLRNRCFLEENFTIQGDVALPPYYQTEEDDEMPFICSLSRDNG 276 (1956)
T ss_pred HHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhccccCcccccccccCcccCCCceeecccccCc
Confidence 99999999999999999999999999999999999875421 000
Q ss_pred ---------------------------------------------CC---CCCCCCCChhhhhhhheecccCCCCCC---
Q psy12306 444 ---------------------------------------------IA---KPRSNFDSFWQSLLTVFQQEQKGQEES--- 472 (1643)
Q Consensus 444 ---------------------------------------------~~---~~~~nFd~f~~A~vTlF~iltge~w~~--- 472 (1643)
.. +...||||++.|.+.+||++|.|||.+
T Consensus 277 m~~c~~ip~lre~g~pc~l~~eay~~~~~~~cvnwnqyynvcr~g~~nphkgainfdnigyawiaifqvitlegwvdimy 356 (1956)
T KOG2302|consen 277 MMGCHEIPPLREQGRPCCLSDEAYDFGASGLCVNWNQYYNVCRTGSANPHKGAINFDNIGYAWIAIFQVITLEGWVDIMY 356 (1956)
T ss_pred ccccccCCCccccCCCCccchhhhccCcCcceechHHhhhhccCCCCCCcCCcccccccchhhhhhheeeeehhhhhhhh
Confidence 00 112799999999999999999999975
Q ss_pred ---CCC-------------------------------ccc-cchhH---Hhhc---C-----------------------
Q psy12306 473 ---PPR-------------------------------SIM-ENEEE---EEEG---S----------------------- 488 (1643)
Q Consensus 473 ---~~~-------------------------------~~~-~~e~~---~~~~---~----------------------- 488 (1643)
|+. ++. +.|.+ |++. +
T Consensus 357 yvmdahsfynfiyfilliivgsffminKOGvviatqfsetkqresqlmreqr~r~lsnstlasfsepgscyeellkyv~h 436 (1956)
T KOG2302|consen 357 YVMDAHSFYNFIYFILLIIVGSFFMINLCLVVIATQFSETKQRESQLMREQRQRYLSNSTLASFSEPGSCYEELLKYVCH 436 (1956)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHhcccchhhhCCCchHHHHHHHHHHH
Confidence 110 000 00000 0000 0
Q ss_pred ------------------C------Cc-----cccccccchhhhcc------------ccccccc-cCC-----------
Q psy12306 489 ------------------I------IE-----GEEIEDESVREEED------------GVKVQLE-NCD----------- 515 (1643)
Q Consensus 489 ------------------~------~~-----~~~~~~~~~~~~~~------------~~~~~~~-~~~----------- 515 (1643)
+ .. |-+...++..-+.+ ..+.... ...
T Consensus 437 ilrkakrr~l~ly~a~qsr~q~~gp~apap~~pgp~~aesvhyhadch~eg~~~ravgsgk~~tspgp~~pg~~~sgp~~ 516 (1956)
T KOG2302|consen 437 ILRKAKRRALGLYQALQSRRQALGPEAPAPAKPGPHAAESVHYHADCHGEGDEGRAVGSGKCQTSPGPASPGNDHSGPEL 516 (1956)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCCccceeecccccCCCcccccccCCccccCCCCCCCCCCCCCCcc
Confidence 0 00 00000000000000 0000000 000
Q ss_pred ---CcccCCc----hhhhhcc-ccc--cCc------ccccccccc-------------------------CC---ccCCC
Q psy12306 516 ---SEFYDYS----YQADIMN-NED--ARP------RRLSEFNTA-------------------------TK---KQPIP 551 (1643)
Q Consensus 516 ---~~~~~~~----~~~~~~~-~~~--~~~------~~~~~~~~~-------------------------~~---~~~~~ 551 (1643)
...++.. .+...+. ..+ .-| .+-+++... .. -.+.+
T Consensus 517 l~~p~py~~~ph~l~~~~pc~las~pascpyc~ra~~~e~el~~~esgdsdg~gvyeftqd~~hgd~~dp~~~~~gs~~~ 596 (1956)
T KOG2302|consen 517 LPQPSPYDATPHTLVQPIPCTLASDPASCPYCQRADGRESELGSTESGDSDGSGVYEFTQDEAHGDGADPSESELGSEEE 596 (1956)
T ss_pred CCCCCcccccchhhcCCCCCcCCCCCCCCcchhhcCCCcccccCCcCCCCCCccccccccccccccCCCCCCcCCCCCcc
Confidence 0000000 0000000 000 000 000000000 00 00000
Q ss_pred CCCceeeeCCCChhhHHHhhcccccchhHHHHH-----------------------HhhhhchhhhHhhhhhheeeEEEe
Q psy12306 552 PASSFFIFSATNPFRVWCHWICNHDHFGNAILF-----------------------LGYFDNFFTAVFTIEILLKIISYG 608 (1643)
Q Consensus 552 ~~~slf~f~~~n~~R~~c~~iv~~~~F~~~Il~-----------------------L~~~d~ift~iF~iE~~lKiia~G 608 (1643)
......+-.-+.-+|-..+.||.++||..-|++ |++-+.+||..|..||.+|..++|
T Consensus 597 ~aeq~~~g~~wr~~~~klr~ivdskyf~rgimmailvntlsmgieyheqpeeltnalei~n~vftsmfalEm~lkla~~g 676 (1956)
T KOG2302|consen 597 EAEQWLCGDVWRETRAKLRGIVDSKYFNRGIMMAILVNTLSMGIEYHEQPEELTNALEIDNNVFTSMFALEMDLKLAARG 676 (1956)
T ss_pred hhhhhHHHHHHHHHHHHHHhhhhhhhcccchhhHHHhhhhhhccccccChHHHhhHHHhhhhhhHHHHHHHHHHhhhhcc
Confidence 001111122223345567789999999865443 778889999999999999999999
Q ss_pred ceecCcccccccCCcccEEEehhhhHHHhhc-ccchhHHHHHHHhhhhhhhhhhhcccChhHHHHHHHHHHHHhhhHHHH
Q psy12306 609 FILHDGAFCRSSFNLLDLLVVIVSVVAIYWN-SAAIAFVKILRVLRVLRPLRAINRAKGLKHVVQCVIVAVKTIGNIVLV 687 (1643)
Q Consensus 609 ~~~~~~~Y~r~~WN~lDf~vVi~sli~~~~~-~~~ls~lr~lR~lRvLRpLR~i~~~~~lk~vv~~l~~si~~i~nv~lv 687 (1643)
++ .|.||+.|++|-++|++|.-+++.. .++++++|.+|.+|+ +++.+..|.++.- +..-++++.|+.-.
T Consensus 677 ~f----~y~rnPynifdgiiv~is~wEiVgqq~GglsvlrtFrllrv---lkLvrf~palqrq---lvvl~ktmdnvAtf 746 (1956)
T KOG2302|consen 677 FF----RYHRNPYNIFDGIIVAISHWEIVGQQDGGLSVLRTFRLLRV---LKLVRFSPALQRQ---LVVLMKTMDNVATF 746 (1956)
T ss_pred ch----hccCCCcccCCCeEEEEEeeEeecccCCCcCCCcHHHHHHH---HHHHhhhHHHHHH---HHHHHHhccchhhh
Confidence 98 9999999999999999998887643 356665555555555 4554445555543 34446778888766
Q ss_pred HHHHHHHHHHhhhhheeceeeEEEeccccccchhHHHHHHHHHhhhhcccccCCcccccCCCCCCCccccCCceeeecCC
Q psy12306 688 TCLLQFMFAVIGVQLFKYVVKCVIVAIKTIGNIMLVTYLLSFMFAVMGVQLFKGKFFQCNDGSKMTKAECHGTYLVFSNG 767 (1643)
Q Consensus 688 ~~l~~~iFaiiG~~lF~~~~rc~~~~i~~i~~l~~~~~~~~~iFai~Gv~lF~Gk~~~C~d~~~~~~~~C~~~~~~~~~g 767 (1643)
+.++++ +++||||+||.+|+-||+.=+|. |
T Consensus 747 ctllmL---------------------------------fififsIlgmh~fGckfs~e~dt-----------------G 776 (1956)
T KOG2302|consen 747 CTLLML---------------------------------FIFIFSILGMHSFGCKFSLETDT-----------------G 776 (1956)
T ss_pred hhHHHH---------------------------------HHHHHhhhhhhhhcccccccccc-----------------C
Confidence 555443 46789999999999998753321 1
Q ss_pred CCCCCccccccccCCccccccHHHHHHHhhhhcccCCchhhhhhhcccccCCCCcccccccceeeEeEEEeehhhHHHHH
Q psy12306 768 KIDEPSIEVREWSKHRFHFDDVAKAMLTLFTVSTFEGWPGLLYNSIDSNLENHGPIHNYRPIVATYYIIYIIIIAFFMVN 847 (1643)
Q Consensus 768 ~~~~~~~~~~~W~~~~~nFDn~~~a~ltLF~v~T~egW~dimy~~~ds~~~~~~P~~~~~~~~~iyFi~fiiig~ff~lN 847 (1643)
+ =....-|||.+.+|..|+||+.|.|||+.++|++|.++ ++|+++||+..+-+|+|.+.|
T Consensus 777 d----------t~pDrknfdsllwaivTvfqilTqedwn~vLyngmast----------Sswa~lyfvAlmtfGnYvlfn 836 (1956)
T KOG2302|consen 777 D----------TVPDRKNFDSLLWAIVTVFQILTQEDWNVVLYNGMAST----------SSWAPLYFVALMTFGNYVLFN 836 (1956)
T ss_pred C----------cCCCccccchHHHHHHHHHhhhcccccchhhhcCcccc----------CCcchhHHHHhhhccceeeec
Confidence 1 01234599999999999999999999999999998875 678999999999999999999
Q ss_pred HHHHHHHHhhhchhhh-----------------hh------------hccc-----------------------------
Q psy12306 848 IFVGFVIVTFQNEGEQ-----------------EY------------KNCE----------------------------- 869 (1643)
Q Consensus 848 Lfvgvii~~F~~~~e~-----------------~~------------~~~~----------------------------- 869 (1643)
|.++++++.|+.++.. +. |.|.
T Consensus 837 llvailvEgFqaee~s~rs~~qhDe~q~~~~~~e~fdkl~e~ld~d~k~cp~~~t~~~H~~~r~sl~~hl~~~~aasP~~ 916 (1956)
T KOG2302|consen 837 LLVAILVEGFQAEEDSNRSGLQHDEDQHSQNPEEGFDKLQEGLDSDPKLCPHHHTPNGHLRSRLSLGHHLAHQHAASPHP 916 (1956)
T ss_pred cchhhhhhhcccccccccccccccccccccCccccchhhcccccCccccCccccCCCCCcccccCCCCccccccCCCCCC
Confidence 9999999999753210 00 0000
Q ss_pred ---cch----------------------hh------------------------hhHHHHhhh-----------------
Q psy12306 870 ---LDK----------------------NQ------------------------RNCIEFALK----------------- 883 (1643)
Q Consensus 870 ---l~k----------------------~q------------------------~~~~~~~~~----------------- 883 (1643)
.++ +| +.|-+ .+|
T Consensus 917 ~~t~sp~~~~~~~~sR~~S~~~s~~~~~d~~~~pS~rss~~~Pw~~s~awtsRrss~~q-slkh~~~~ge~~SlLsgeyg 995 (1956)
T KOG2302|consen 917 GETISPDSSVGSYQSRGISDYSSEYHSYDQDSHPSERSSGDHPWGTSYAWTSRRSSWNQ-SLKHQDPSGEYESLLSGEYG 995 (1956)
T ss_pred CCCcCCCcccccccccccccccCCCccccCCCCchhccCCCCCCccchhhhhcccchhh-hcccCCCcchhhhhhccccc
Confidence 000 00 00000 000
Q ss_pred --------------cCCCc-------------------------------------------------------------
Q psy12306 884 --------------AKPVR------------------------------------------------------------- 888 (1643)
Q Consensus 884 --------------~kp~~------------------------------------------------------------- 888 (1643)
+.|-.
T Consensus 996 q~ts~~~~~~~~~raAPGpraa~~r~~~s~~~ahPr~~~~aa~Rsas~~rdcngrv~s~~k~v~t~~~s~r~d~d~~~eE 1075 (1956)
T KOG2302|consen 996 QSTSQLSAPHGSRRAAPGPRAASRRRVFSLDVAHPRGSAHAAGRSASTHRDCNGRVTSMSKDVFTQDISTRHDEDEGKEE 1075 (1956)
T ss_pred cccccccCCCCCccCCCCCccccccccccccccCCCcccccccCCCccccccCCccchhhhhhhccCCCCccccccchhc
Confidence 00000
Q ss_pred ------------------------------cccCcccccceeeeeeeccchhhhhhHHHHhhhheeeeeeccCChhH-H-
Q psy12306 889 ------------------------------RYIPKQRLQYKIWWFVTSQYFEYTIFCLIMINTLTLAMKFYRQPLFY-A- 936 (1643)
Q Consensus 889 ------------------------------~~~P~~~~r~~~~~iv~s~~Fe~~I~~lIllN~i~la~e~~~~~~~~-~- 936 (1643)
-..|++++|-.|+.+++|+.|+.+++++|++|++++++|.....+.. +
T Consensus 1076 g~~~k~~r~r~~i~~~kp~~c~~r~~Ws~ylF~pQ~rFR~lc~~ii~hk~Fd~vVl~~IfLNcVtialerp~i~~~s~Er 1155 (1956)
T KOG2302|consen 1076 GQFQKCKRVRKQITRYKPHWCNLRELWSKYLFSPQNRFRVLCQNIIQHKAFDTVVLFFIFLNCVTIALERPAIVEGSTER 1155 (1956)
T ss_pred chhHHHHhhhhhhcccCCcchhHHHHHHHHhcCcccHHHHHHHHHHHHhhhhheehhhhhhhhHHHHhcccccccCcceE
Confidence 01356667777888999999999999999999999999986543221 2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHhhhccc----ccccccccceeehhhHhHHHHHHhcCCCccccccccCCCCCcccCccee
Q psy12306 937 DILDKMNMFFTTVFALEFVFKLAAFRF----KNYFSDAWNVFDFVIVMGSFIDIFSDSPPHAAAKATIPGSHEQTSGRLS 1012 (1643)
Q Consensus 937 ~~l~~in~~ft~iF~iE~iLKi~a~g~----~~Yf~~~wNifDfivVi~sii~ii~~~~~~~~~~~~~~g~~~~~~~~~~ 1012 (1643)
..+..-|++|++||.+||.+|++|+|+ ..|+++.||.+|+++|.+|+++++...... +| ..-...
T Consensus 1156 iFltlsnyIFtaIfV~Em~lKVVALGl~fge~aYl~ssWN~LDgflv~vsviDilvs~asa-------~g----~kILgV 1224 (1956)
T KOG2302|consen 1156 IFLTLSNYIFTAIFVVEMTLKVVALGLYFGEQAYLRSSWNVLDGFLVAVSVIDILVSQASA-------GG----AKILGV 1224 (1956)
T ss_pred EEEEecchHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHhhhHHHHHHHHHHHHHHHhhh-------hh----HHHHHH
Confidence 234556799999999999999999984 589999999999999999999998332211 11 012234
Q ss_pred eeeeeehhhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-ccccccCC---C--------
Q psy12306 1013 INFFRLFRVMRLIKLLSRGEGIRTLLWTFIKSFQALPYVALLIVMLFFIYAVIGMQVFG-KIALVFGG---G-------- 1080 (1643)
Q Consensus 1013 i~~lRl~RvlRllrLi~~~~~lr~Ll~tl~~S~~~L~~v~lLl~l~~fIfAiiGmqlFg-~~~~~~~~---~-------- 1080 (1643)
+|++|++|.+|++|.+.++++++.++.|++.|++.+.||.++.+-+++||+++|+|||. ++....+. .
T Consensus 1225 lrvLRlLRtlRpLRviSra~glklVveTL~sSLkpIgnIvliccaffiiFgilgvqLFkgkfy~c~g~dtrnitnKSdc~ 1304 (1956)
T KOG2302|consen 1225 LRVLRLLRTLRPLRVISRAPGLKLVVETLISSLKPIGNIVLICCAFFIIFGILGVQLFKGKFYHCLGVDTRNITNKSDCM 1304 (1956)
T ss_pred HHHHHHHHHhhHHHHHhhcccHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHhcccceeccccccccccchhhhc
Confidence 67888889999999999999999999999999999999999999999999999999995 44321111 1
Q ss_pred ------CCCCCCCCCHhHHHHhhhccccccccHHHHHhhcCCCCCcccCCCCCCCCCCCCCCCcCcceeeeeeehhhHHH
Q psy12306 1081 ------IHRNNNFQTFPQAVLVLFRSATGEAWQDIMLDCSNRPSEVKCDAASDGNPTNDDNVSCGSDIAYPYFISFYVLC 1154 (1643)
Q Consensus 1081 ------i~~~~NF~tf~~A~ltLF~v~Tge~W~~im~~~~~~~~~~~Cd~~~~~~~~~~~~~~Cgs~~a~iyFisf~ii~ 1154 (1643)
..+..||+|.++|+++||.++|-+||..||||..++. ..+-.|..+ -++|-.+|||+|++|+
T Consensus 1305 aa~yRwvrhkyNfdnlgqalmSLFvLaSkDgWv~ImyDgldav-avdqqPI~n-----------hnpwmllYfIsfllIv 1372 (1956)
T KOG2302|consen 1305 AAPYRWVRHKYNFDNLGQALMSLFVLASKDGWVNIMYDGLDAV-AVDQQPILN-----------HNPWMLLYFISFLLIV 1372 (1956)
T ss_pred ccchhhhhhhcccchHHHHHHHHHHHhcccchhhhhccchhhc-eeeeecccc-----------CCcHHHHHHHHHHHHH
Confidence 1225699999999999999999999999999988764 122222221 2568899999999999
Q ss_pred HHHHHHHHHHHHHHhhhh
Q psy12306 1155 SFLIINLFVAVIMDNFDY 1172 (1643)
Q Consensus 1155 ~fiilNLfVAvIidnF~~ 1172 (1643)
+|+++||||+++++||-.
T Consensus 1373 sffVlnmfVgvvvenfhK 1390 (1956)
T KOG2302|consen 1373 SFFVLNMFVGVVVENFHK 1390 (1956)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999999963
No 5
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=99.78 E-value=9.7e-20 Score=201.81 Aligned_cols=191 Identities=36% Similarity=0.667 Sum_probs=159.2
Q ss_pred HHhHHHHHHHHHHHHHHhhhccc--ccccccccceeehhhHhHHHHHHhcCCCccccccccCCCCCcccCcceeeeeeee
Q psy12306 941 KMNMFFTTVFALEFVFKLAAFRF--KNYFSDAWNVFDFVIVMGSFIDIFSDSPPHAAAKATIPGSHEQTSGRLSINFFRL 1018 (1643)
Q Consensus 941 ~in~~ft~iF~iE~iLKi~a~g~--~~Yf~~~wNifDfivVi~sii~ii~~~~~~~~~~~~~~g~~~~~~~~~~i~~lRl 1018 (1643)
+++.+++++|++|+++|+++.|+ ++|++++||++|+++++++++..+...... . +.....+.+|+
T Consensus 1 ~~~~~~~~~f~~e~~l~~~~~~~~~~~y~~~~~~~~d~~~~~~~~~~~~~~~~~~--------~-----~~~~~~~~~~~ 67 (200)
T PF00520_consen 1 ILEIIFDVIFILEIVLRFFALGFKRRRYFRSWWNWFDFISVIPSIVSVILRSYGS--------A-----SAQSLLRIFRL 67 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCG-GCCCCSHHHHHHHHHHHHHCCHHCCHCSS---------------HHCHCHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHhccHHHHHhcChhhccccccccccccccccccccc--------c-----cccceEEEEEe
Confidence 47899999999999999999998 799999999999999999977776322110 0 00123577889
Q ss_pred hhhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc-------cCCCCCCCCCCCCHh
Q psy12306 1019 FRVMRLIKLLSRGEGIRTLLWTFIKSFQALPYVALLIVMLFFIYAVIGMQVFGKIALV-------FGGGIHRNNNFQTFP 1091 (1643)
Q Consensus 1019 ~RvlRllrLi~~~~~lr~Ll~tl~~S~~~L~~v~lLl~l~~fIfAiiGmqlFg~~~~~-------~~~~i~~~~NF~tf~ 1091 (1643)
+|.+|++|+++..+.++.++.++..+++.+..++++++++++.||++|+++|++.... +........+|++++
T Consensus 68 l~~~R~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 147 (200)
T PF00520_consen 68 LRLLRLLRLLRRFRSLRRLLRALIRSFPDLFKFILLLFIVLLFFACIGYQLFGGSDNSCCDPTWDSENDIYGYENFDSFG 147 (200)
T ss_dssp HHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS-------SS----SSTHHHHSSHH
T ss_pred eccccccccccccccccccccccccccccccccccccccccccccchhheeccccccccccccccccccccccccccccc
Confidence 9999999999999999999999999999999999999999999999999999875421 122455667999999
Q ss_pred HHHHhhhccccccccHHHHHhhcCCCCCcccCCCCCCCCCCCCCCCcCcceeeeeeehhhHHHHHHHHHHHHHHH
Q psy12306 1092 QAVLVLFRSATGEAWQDIMLDCSNRPSEVKCDAASDGNPTNDDNVSCGSDIAYPYFISFYVLCSFLIINLFVAVI 1166 (1643)
Q Consensus 1092 ~A~ltLF~v~Tge~W~~im~~~~~~~~~~~Cd~~~~~~~~~~~~~~Cgs~~a~iyFisf~ii~~fiilNLfVAvI 1166 (1643)
.|+.++|+++|+|||++++++++.. .+..+.+||++|+++++++++|+++|+|
T Consensus 148 ~s~~~~~~~~t~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~i~~~~l~nlliavi 200 (200)
T PF00520_consen 148 ESLYWLFQTMTGEGWGDVMPSCMSA----------------------RSWLAVIFFISFIIIVSILLLNLLIAVI 200 (200)
T ss_dssp HHHHHHHHHHTTTTCCCCHHHHHHT----------------------TSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccCCccccccccccc----------------------cchhHhHHhhhhhhhHHHHHHHHHHhcC
Confidence 9999999999999999999986521 2346788999999999999999999986
No 6
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=99.76 E-value=1e-19 Score=201.68 Aligned_cols=196 Identities=26% Similarity=0.521 Sum_probs=152.5
Q ss_pred hhhchhhhHhhhhhheeeEEEeceecCcccccccCCcccEEEehhhhHHHhhcccch----hHHHHHHHhhhhhhhhhhh
Q psy12306 587 YFDNFFTAVFTIEILLKIISYGFILHDGAFCRSSFNLLDLLVVIVSVVAIYWNSAAI----AFVKILRVLRVLRPLRAIN 662 (1643)
Q Consensus 587 ~~d~ift~iF~iE~~lKiia~G~~~~~~~Y~r~~WN~lDf~vVi~sli~~~~~~~~l----s~lr~lR~lRvLRpLR~i~ 662 (1643)
++|.+++++|++|+++|+++.|+. ..+|++++||++|+++++.++++.+....+. ..++.+|++|.+|++|+++
T Consensus 1 ~~~~~~~~~f~~e~~l~~~~~~~~--~~~y~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~~~~ 78 (200)
T PF00520_consen 1 ILEIIFDVIFILEIVLRFFALGFK--RRRYFRSWWNWFDFISVIPSIVSVILRSYGSASAQSLLRIFRLLRLLRLLRLLR 78 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCG---GCCCCSHHHHHHHHHHHHHCCHHCCHCSS--HHCHCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHhccH--HHHHhcChhhcccccccccccccccccccccccccceEEEEEeecccccccccc
Confidence 578999999999999999999974 4599999999999999999888876543222 2478899999999999999
Q ss_pred cccChhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhhheeceeeEEEeccccccchhHHHHHHHHHhhhhcccccCCc
Q psy12306 663 RAKGLKHVVQCVIVAVKTIGNIVLVTCLLQFMFAVIGVQLFKYVVKCVIVAIKTIGNIMLVTYLLSFMFAVMGVQLFKGK 742 (1643)
Q Consensus 663 ~~~~lk~vv~~l~~si~~i~nv~lv~~l~~~iFaiiG~~lF~~~~rc~~~~i~~i~~l~~~~~~~~~iFai~Gv~lF~Gk 742 (1643)
+.+.++..++++.++++.+..++++..++. +.||+.|.++|++.
T Consensus 79 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~------------------------------------~~~a~~~~~lf~~~ 122 (200)
T PF00520_consen 79 RFRSLRRLLRALIRSFPDLFKFILLLFIVL------------------------------------LFFACIGYQLFGGS 122 (200)
T ss_dssp TTTSHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------------------HHHHHHHHHHHTTT
T ss_pred cccccccccccccccccccccccccccccc------------------------------------ccccchhheecccc
Confidence 999999999999999998877655443333 45888888888887
Q ss_pred ccccCCCCCCCccccCCceeeecCCCCCCCccccccccCCccccccHHHHHHHhhhhcccCCchhhhhhhcccccCCCCc
Q psy12306 743 FFQCNDGSKMTKAECHGTYLVFSNGKIDEPSIEVREWSKHRFHFDDVAKAMLTLFTVSTFEGWPGLLYNSIDSNLENHGP 822 (1643)
Q Consensus 743 ~~~C~d~~~~~~~~C~~~~~~~~~g~~~~~~~~~~~W~~~~~nFDn~~~a~ltLF~v~T~egW~dimy~~~ds~~~~~~P 822 (1643)
...|.+... .+..+.++..+||+++.|++++|++.|+|||.++++..++.
T Consensus 123 ~~~~~~~~~-----------------------~~~~~~~~~~~f~~~~~s~~~~~~~~t~~~~~~~~~~~~~~------- 172 (200)
T PF00520_consen 123 DNSCCDPTW-----------------------DSENDIYGYENFDSFGESLYWLFQTMTGEGWGDVMPSCMSA------- 172 (200)
T ss_dssp S-------S-----------------------S----SSTHHHHSSHHHHHHHHHHHHTTTTCCCCHHHHHHT-------
T ss_pred ccccccccc-----------------------ccccccccccccccccccccccccccccCCccccccccccc-------
Confidence 766544320 01122334568999999999999999999999999987632
Q ss_pred ccccccceeeEeEEEeehhhHHHHHHHHHHH
Q psy12306 823 IHNYRPIVATYYIIYIIIIAFFMVNIFVGFV 853 (1643)
Q Consensus 823 ~~~~~~~~~iyFi~fiiig~ff~lNLfvgvi 853 (1643)
.+....+||++|+++++++++|+++|++
T Consensus 173 ---~~~~~~~~~~~~~~i~~~~l~nlliavi 200 (200)
T PF00520_consen 173 ---RSWLAVIFFISFIIIVSILLLNLLIAVI 200 (200)
T ss_dssp ---TSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---cchhHhHHhhhhhhhHHHHHHHHHHhcC
Confidence 1344568999999999999999999986
No 7
>KOG3713|consensus
Probab=99.75 E-value=2.7e-18 Score=203.39 Aligned_cols=210 Identities=24% Similarity=0.277 Sum_probs=159.6
Q ss_pred chhhhhhhhccccc---cchhhhHhHHHHHHHHHHHhhccCCCccchhhhhhhhhHHHHHHHHHHHhhhhcccccchhhh
Q psy12306 246 NRRMRRACRKAVKS---QGFYWLIIILVFLNTGVLATEHYQQPKWLDSFQEVTNIFFVALFTMEMTLKMYSLGFQEVTNI 322 (1643)
Q Consensus 246 ~~~~r~~~~~iv~s---~~F~~~i~~~IllN~i~la~e~~~~~~~~~~~l~~~n~~~~~lf~~e~~~~~~~~~~~~~~~~ 322 (1643)
++++|+.+.+.-.| +.|.....++|+++++.+++.+.+.-+..+..-. ..... ............+++|.
T Consensus 175 r~rlW~~~E~P~SS~~Ak~fa~~Sv~FVlvSiv~lcL~T~pe~q~~~~~~~---~~~~~----~~~~~~~~~p~l~~vE~ 247 (477)
T KOG3713|consen 175 RRRLWALLENPGSSLAAKVFAVLSVLFVLVSIVGLCLGTLPEFQVPDKQGE---GLLVN----VEKIESEPHPILTYVET 247 (477)
T ss_pred HHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHcCCHhhhchhhccc---ccccc----ccccCCCCCCchHHHHH
Confidence 34444444444333 3489999999999999999998764321111100 00000 00011123345578899
Q ss_pred hHHHHHHHHHHHhhheeccc-ccccccccccceeeeehhhhhHHhhhccCC-------CCCcchhhHHHHHhHhhhhhhc
Q psy12306 323 FFVALFTMEMTLKMYSLGFQ-GYFVSLFNRFDCFVVIGSIGEMILTRTNIM-------PPLGVSVLRCVRLLRVFKVTKY 394 (1643)
Q Consensus 323 ~f~~iF~iE~iLKi~a~G~~-~Yf~~~wNifD~~vvl~sii~lil~~~~~~-------~~~~l~vLR~~RlLRi~kl~r~ 394 (1643)
+|.++||+|+++|++..+-+ +|++++.|++|++.+++.++++.+...... ....+++||++|++|+|||+||
T Consensus 248 vCi~WFT~E~llR~~~~P~k~~F~k~pLNIIDllAIlPFYielll~~~~~~~~~~l~~~~~vvrvlR~lRI~RI~KLaRh 327 (477)
T KOG3713|consen 248 VCIAWFTFEYLLRFLVAPNKLEFFKSPLNIIDLLAILPFYLELLLTLFGGESLKELENAGLVVRVLRVLRILRIFKLARH 327 (477)
T ss_pred HHHHHHHHHHHHHHHcCchHHHHHhCcchHHHHHHHHHHHHHHHHHHhccchHHHHhhhhhhHHHHHHHHHHHHHHHHhh
Confidence 99999999999999998876 899999999999999999999988755421 1135899999999999999999
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccCCCCCCCCCCCCC----hhhhhhhheecccCCCC
Q psy12306 395 WRSLSNLVASLLNSIQSIASLLLLLFLFIVIFALLGMQVFGGKFNFNPTIAKPRSNFDS----FWQSLLTVFQQEQKGQE 470 (1643)
Q Consensus 395 ~~~l~~L~~ti~~s~~~l~~l~lll~l~i~iFAilGmqlFgg~~~~~~~~~~~~~nFd~----f~~A~vTlF~iltge~w 470 (1643)
+.+||.+..|+.+|.++++.++++|.+.+.+||.+.+.+.... +..+|.+ +|||.+||.+|.+||=.
T Consensus 328 S~GLr~lg~Tlr~S~~ElglLllfL~~GI~iFStlvY~~Ek~~---------~~~~FtSIPa~~WWaiVTMTTVGYGDm~ 398 (477)
T KOG3713|consen 328 STGLRTLGLTLRRSYRELGLLLLFLAVGIVIFSTLVYFAEKDE---------PDTKFTSIPAGFWWAVVTMTTVGYGDMV 398 (477)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC---------CCCCCccccchhheeeEEEeeecccCcc
Confidence 9999999999999999999999999999999999998776532 2333554 79999999999999954
Q ss_pred C
Q psy12306 471 E 471 (1643)
Q Consensus 471 ~ 471 (1643)
+
T Consensus 399 P 399 (477)
T KOG3713|consen 399 P 399 (477)
T ss_pred c
Confidence 3
No 8
>PLN03223 Polycystin cation channel protein; Provisional
Probab=99.69 E-value=1.3e-16 Score=203.31 Aligned_cols=251 Identities=19% Similarity=0.231 Sum_probs=171.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhhcc-----cccccccccceeehhhHhHHHHHHhcCCC----------cc--cc-c
Q psy12306 935 YADILDKMNMFFTTVFALEFVFKLAAFR-----FKNYFSDAWNVFDFVIVMGSFIDIFSDSP----------PH--AA-A 996 (1643)
Q Consensus 935 ~~~~l~~in~~ft~iF~iE~iLKi~a~g-----~~~Yf~~~wNifDfivVi~sii~ii~~~~----------~~--~~-~ 996 (1643)
..-+++++-.+|.+.|+.+-+.++...+ ++.||+++||++|++++++++..++.... .. .. .
T Consensus 1174 fvLacEIIFVLFILYfIyrEIkEI~k~KK~RG~~laYFKSfWNwLEIl~IlLS~AAIvLYFvf~~~~astf~~dIrynIY 1253 (1634)
T PLN03223 1174 VRFAMEILLAIGAVYSVYEEAMDFGSSKKTRGSYLAYFLSGWNYVDFASIGLHLATIMMWFVFSWSYARAFEPDIHYDIY 1253 (1634)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhHhccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhhhhh
Confidence 3445677778888888999998887643 46899999999999999999888752100 00 00 0
Q ss_pred ccc----------CCCCCcc-cCccee--------------eeeeeehhhhHHHHHhhcchhHHHHHHHHHHHHHHHHHH
Q psy12306 997 KAT----------IPGSHEQ-TSGRLS--------------INFFRLFRVMRLIKLLSRGEGIRTLLWTFIKSFQALPYV 1051 (1643)
Q Consensus 997 ~~~----------~~g~~~~-~~~~~~--------------i~~lRl~RvlRllrLi~~~~~lr~Ll~tl~~S~~~L~~v 1051 (1643)
... .++.... ...+.. ..++-+++++|++|+++..+.++.|..++..+.+.|+.+
T Consensus 1254 K~ls~sa~fl~Lq~pg~l~d~nd~F~sf~~La~~~q~Y~aL~GIlIFLsiLKfLRLLRFNPrL~vLt~TLrrAapDLa~F 1333 (1634)
T PLN03223 1254 KNLSASANFTALRIPNELPEMNDMFLEMKNLVDYFQWYMTLSGINIILLLGRILKLMDFQPRLGVITRTLWLAGADLMHF 1333 (1634)
T ss_pred hhhhhhcchhhhcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHH
Confidence 000 0000000 000000 112235788999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcccccccCCCCCCCCCCCCHhHHHHhhhccccccccHHHHHhhcCCCCCcccCCCCCCCCC
Q psy12306 1052 ALLIVMLFFIYAVIGMQVFGKIALVFGGGIHRNNNFQTFPQAVLVLFRSATGEAWQDIMLDCSNRPSEVKCDAASDGNPT 1131 (1643)
Q Consensus 1052 ~lLl~l~~fIfAiiGmqlFg~~~~~~~~~i~~~~NF~tf~~A~ltLF~v~Tge~W~~im~~~~~~~~~~~Cd~~~~~~~~ 1131 (1643)
+++++++++.||.+|+.+||.. ...|.||..|+.|||++++|+.+ ..+.+..... ..
T Consensus 1334 ~IIF~IVF~AFAqLG~LLFGt~----------ve~FSTf~sSL~TLFqMLLGDfd-YF~eDLk~l~---------e~--- 1390 (1634)
T PLN03223 1334 FVIFGMVFVGYAFIGHVIFGNA----------SVHFSDMTDSINSLFENLLGDIT-YFNEDLKNLT---------GL--- 1390 (1634)
T ss_pred HHHHHHHHHHHHHHHHHHhccC----------chhhcCHHHHHHHHHHHHHcCch-HHHHHHHhhh---------cc---
Confidence 9999999999999999999973 24899999999999999999744 3444332111 00
Q ss_pred CCCCCCcCcceeeeeeehhhHHHHHHHHHHHHHHHHHhhhhhhhccc-cCC-ccchHHH-HHHhcccC-C-CCCcceehh
Q psy12306 1132 NDDNVSCGSDIAYPYFISFYVLCSFLIINLFVAVIMDNFDYLTRDWS-ILG-PHHLDEF-IRLWSEYD-P-DAKGRIKHL 1206 (1643)
Q Consensus 1132 ~~~~~~Cgs~~a~iyFisf~ii~~fiilNLfVAvIidnF~~~~~~~~-~l~-~~~l~~f-~~~W~~~D-p-~~~g~i~~~ 1206 (1643)
...++.+||++|++++.|+++|||||||+|.|++..++.+ ..+ +.++-+| .+-|..+= + -.+..|+..
T Consensus 1391 -------nrVLGPIYFfSFILLV~FILLNMFIAII~DSFsEVK~d~seq~s~e~EIvDfm~~rfrslL~g~~~~~~i~~~ 1463 (1634)
T PLN03223 1391 -------QFVVGMIYFYSYNIFVFMILFNFLLAIICDAFGEVKANAAETVSVHTELFPMLRDKWRSMFKGWFYKNHIPEA 1463 (1634)
T ss_pred -------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHhhhcccccCCcH
Confidence 1236889999999999999999999999999998876643 233 3444332 23333221 0 123345555
Q ss_pred hHHHHHHhc
Q psy12306 1207 DVVTLLRKI 1215 (1643)
Q Consensus 1207 ~l~~ll~~l 1215 (1643)
++-++||.-
T Consensus 1464 ~~~~~lr~w 1472 (1634)
T PLN03223 1464 RVRRQLRIW 1472 (1634)
T ss_pred HHHHHHHHh
Confidence 566665543
No 9
>KOG1545|consensus
Probab=99.62 E-value=3.8e-16 Score=175.00 Aligned_cols=196 Identities=18% Similarity=0.314 Sum_probs=136.7
Q ss_pred hhhhHhHHHHHHHHHHHhhccCCCccchhhh---------hhhhhHHH-HHHHHHHHhhhhcccccchhhhhHHHHHHHH
Q psy12306 262 FYWLIIILVFLNTGVLATEHYQQPKWLDSFQ---------EVTNIFFV-ALFTMEMTLKMYSLGFQEVTNIFFVALFTME 331 (1643)
Q Consensus 262 F~~~i~~~IllN~i~la~e~~~~~~~~~~~l---------~~~n~~~~-~lf~~e~~~~~~~~~~~~~~~~~f~~iF~iE 331 (1643)
...+..++|++++++.|+|+.+....-.+.. ...|.-.. .+ .+..-...... ..+.|..|.+||+.|
T Consensus 193 iAiVSVlVIliSIviFClETlPefrderd~~~~~~~~~~~~~~n~~~~~~~--~~~~~~~f~dP-FFiVEt~CIiWFtfE 269 (507)
T KOG1545|consen 193 IAIVSVLVILISIVIFCLETLPEFRDERDLTGHFPAGTGGGVMNPTSGPEL--LDLGDTKFTDP-FFIVETLCIIWFTFE 269 (507)
T ss_pred eeehhHHHHHHHHHHHHHHhCchhhhhccccccccccCCCcccCCCCCccc--ccccccccCCc-hHhHHHHHHHHHhHH
Confidence 4557788999999999999976432211100 00000000 00 00000000001 136889999999999
Q ss_pred HHHhhheeccc-ccccccccccceeeeehhhhhHHhhhccC----------CCCCcchhhHHHHHhHhhhhhhchHhHHH
Q psy12306 332 MTLKMYSLGFQ-GYFVSLFNRFDCFVVIGSIGEMILTRTNI----------MPPLGVSVLRCVRLLRVFKVTKYWRSLSN 400 (1643)
Q Consensus 332 ~iLKi~a~G~~-~Yf~~~wNifD~~vvl~sii~lil~~~~~----------~~~~~l~vLR~~RlLRi~kl~r~~~~l~~ 400 (1643)
.++|.++++.+ .||++-+|++|++.+++.++.+....... ++-..+|++|++|++|+|||.|++++|+.
T Consensus 270 llvRf~aCPsK~~Ff~nimNiIDiVaI~PyFitlgtela~q~g~g~~gqqaMSlAILRViRLVRVFRIFKLSRHSkGLQI 349 (507)
T KOG1545|consen 270 LLVRFFACPSKATFFRNIMNIIDIVAIIPYFITLGTELAEQQGGGGQGQQAMSLAILRVIRLVRVFRIFKLSRHSKGLQI 349 (507)
T ss_pred HHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCccchhhhhHHHHHHHHHHHHhhheeeccccchHHH
Confidence 99999999987 79999999999999999998876543321 11123788899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccCCCCCCCCCCC----CChhhhhhhheecccCCC
Q psy12306 401 LVASLLNSIQSIASLLLLLFLFIVIFALLGMQVFGGKFNFNPTIAKPRSNF----DSFWQSLLTVFQQEQKGQ 469 (1643)
Q Consensus 401 L~~ti~~s~~~l~~l~lll~l~i~iFAilGmqlFgg~~~~~~~~~~~~~nF----d~f~~A~vTlF~iltge~ 469 (1643)
|.+|+..|+++++.++++|++-++.||..- .+.. .+.|.++| |.||||++||.++.+||=
T Consensus 350 LGqTl~aSmrElgLLIFFlfIgviLFsSav--------YFAE-ade~~S~F~SIPdaFWwavVTMTTVGYGDm 413 (507)
T KOG1545|consen 350 LGQTLRASMRELGLLIFFLFIGVILFSSAV--------YFAE-ADEPESHFSSIPDAFWWAVVTMTTVGYGDM 413 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcee--------eeee-cCCCccCCCcCcccceEEEEEEEeeccccc
Confidence 999999999999988888877666666442 2211 12233344 679999999999999994
No 10
>KOG3713|consensus
Probab=99.52 E-value=8.7e-15 Score=173.89 Aligned_cols=239 Identities=18% Similarity=0.369 Sum_probs=174.9
Q ss_pred ccccceeeeeeecc-------chhhhhhHHHHhhhheeeeeeccC---Ch---------------hHHHHHHHHhHHHHH
Q psy12306 894 QRLQYKIWWFVTSQ-------YFEYTIFCLIMINTLTLAMKFYRQ---PL---------------FYADILDKMNMFFTT 948 (1643)
Q Consensus 894 ~~~r~~~~~iv~s~-------~Fe~~I~~lIllN~i~la~e~~~~---~~---------------~~~~~l~~in~~ft~ 948 (1643)
.++|+++|.+++.+ .|...-.++|+++++.|++.+.+. +. .-...+.+++++|.+
T Consensus 172 ~~~r~rlW~~~E~P~SS~~Ak~fa~~Sv~FVlvSiv~lcL~T~pe~q~~~~~~~~~~~~~~~~~~~~~p~l~~vE~vCi~ 251 (477)
T KOG3713|consen 172 GRLRRRLWALLENPGSSLAAKVFAVLSVLFVLVSIVGLCLGTLPEFQVPDKQGEGLLVNVEKIESEPHPILTYVETVCIA 251 (477)
T ss_pred hhHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHcCCHhhhchhhccccccccccccCCCCCCchHHHHHHHHH
Confidence 34778888887754 588888899999999999976431 11 123468999999999
Q ss_pred HHHHHHHHHhhhc-ccccccccccceeehhhHhHHHHHHhcCCCccccccccCCCCCcccCcceeeeeeeehhhhHHHHH
Q psy12306 949 VFALEFVFKLAAF-RFKNYFSDAWNVFDFVIVMGSFIDIFSDSPPHAAAKATIPGSHEQTSGRLSINFFRLFRVMRLIKL 1027 (1643)
Q Consensus 949 iF~iE~iLKi~a~-g~~~Yf~~~wNifDfivVi~sii~ii~~~~~~~~~~~~~~g~~~~~~~~~~i~~lRl~RvlRllrL 1027 (1643)
.||+|+++|++.. ...+|++++-|++|++.++.-++++........ +..........++++|++|++|++||
T Consensus 252 WFT~E~llR~~~~P~k~~F~k~pLNIIDllAIlPFYielll~~~~~~-------~~~~l~~~~~vvrvlR~lRI~RI~KL 324 (477)
T KOG3713|consen 252 WFTFEYLLRFLVAPNKLEFFKSPLNIIDLLAILPFYLELLLTLFGGE-------SLKELENAGLVVRVLRVLRILRIFKL 324 (477)
T ss_pred HHHHHHHHHHHcCchHHHHHhCcchHHHHHHHHHHHHHHHHHHhccc-------hHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 9999999998665 455899999999999999999999873322110 00000112246899999999999999
Q ss_pred hhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCCCCCCCCCCHhHHHHhhhccccccccH
Q psy12306 1028 LSRGEGIRTLLWTFIKSFQALPYVALLIVMLFFIYAVIGMQVFGKIALVFGGGIHRNNNFQTFPQAVLVLFRSATGEAWQ 1107 (1643)
Q Consensus 1028 i~~~~~lr~Ll~tl~~S~~~L~~v~lLl~l~~fIfAiiGmqlFg~~~~~~~~~i~~~~NF~tf~~A~ltLF~v~Tge~W~ 1107 (1643)
.|+..|+|+|-.|+.+|.+.+.-+++.+.+-+.+||.+...+-..- ...+|.++|.|+.--...+|.-|..
T Consensus 325 aRhS~GLr~lg~Tlr~S~~ElglLllfL~~GI~iFStlvY~~Ek~~---------~~~~FtSIPa~~WWaiVTMTTVGYG 395 (477)
T KOG3713|consen 325 ARHSTGLRTLGLTLRRSYRELGLLLLFLAVGIVIFSTLVYFAEKDE---------PDTKFTSIPAGFWWAVVTMTTVGYG 395 (477)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC---------CCCCCccccchhheeeEEEeeeccc
Confidence 9999999999999999999998888888888888888876664321 2345999988876655555555554
Q ss_pred HHHHhhcCCCCCcccCCCCCCCCCCCCCCCcCcceeeeeeehhhHHHHHHHHHHHHHHHHHhhhhhhhc
Q psy12306 1108 DIMLDCSNRPSEVKCDAASDGNPTNDDNVSCGSDIAYPYFISFYVLCSFLIINLFVAVIMDNFDYLTRD 1176 (1643)
Q Consensus 1108 ~im~~~~~~~~~~~Cd~~~~~~~~~~~~~~Cgs~~a~iyFisf~ii~~fiilNLfVAvIidnF~~~~~~ 1176 (1643)
|+.-.+. -|. ..-+-.+++..+++-|.|.+|++||....++
T Consensus 396 Dm~P~T~-----------------------~Gk-----lvas~cil~GVLvlAlPItiIv~nF~~~y~~ 436 (477)
T KOG3713|consen 396 DMVPVTV-----------------------LGK-----LVASLCILCGVLVLALPITIIVNNFSMYYSE 436 (477)
T ss_pred Ccccccc-----------------------chH-----HHHHHHHHHhHHHhhcchHhHhhhHHHHHHH
Confidence 4221110 011 2224577888899999999999999865443
No 11
>PLN03223 Polycystin cation channel protein; Provisional
Probab=99.44 E-value=4.5e-14 Score=180.54 Aligned_cols=201 Identities=13% Similarity=0.105 Sum_probs=138.8
Q ss_pred hHHHHHHhhhhchhhhHhhhhhheeeEEEecee-cCcccccccCCcccEEEehhhhHHHhhc-------c----------
Q psy12306 579 GNAILFLGYFDNFFTAVFTIEILLKIISYGFIL-HDGAFCRSSFNLLDLLVVIVSVVAIYWN-------S---------- 640 (1643)
Q Consensus 579 ~~~Il~L~~~d~ift~iF~iE~~lKiia~G~~~-~~~~Y~r~~WN~lDf~vVi~sli~~~~~-------~---------- 640 (1643)
+.++++++++=.+|.+.|+.+-+.+|...|... ++.+||+++||++|++++++|+..++.- .
T Consensus 1172 DyfvLacEIIFVLFILYfIyrEIkEI~k~KK~RG~~laYFKSfWNwLEIl~IlLS~AAIvLYFvf~~~~astf~~dIryn 1251 (1634)
T PLN03223 1172 DWVRFAMEILLAIGAVYSVYEEAMDFGSSKKTRGSYLAYFLSGWNYVDFASIGLHLATIMMWFVFSWSYARAFEPDIHYD 1251 (1634)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhHhccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhhh
Confidence 345555666666777788888888876554211 1248999999999999999887776420 0
Q ss_pred --cc----------------------hhH-------------H-HHHHHhhhhhhhhhhhcccChhHHHHHHHHHHHHhh
Q psy12306 641 --AA----------------------IAF-------------V-KILRVLRVLRPLRAINRAKGLKHVVQCVIVAVKTIG 682 (1643)
Q Consensus 641 --~~----------------------ls~-------------l-r~lR~lRvLRpLR~i~~~~~lk~vv~~l~~si~~i~ 682 (1643)
.. ... + -++=.++.+|.||+++..|.|+.+..+|.+|.|.++
T Consensus 1252 IYK~ls~sa~fl~Lq~pg~l~d~nd~F~sf~~La~~~q~Y~aL~GIlIFLsiLKfLRLLRFNPrL~vLt~TLrrAapDLa 1331 (1634)
T PLN03223 1252 IYKNLSASANFTALRIPNELPEMNDMFLEMKNLVDYFQWYMTLSGINIILLLGRILKLMDFQPRLGVITRTLWLAGADLM 1331 (1634)
T ss_pred hhhhhhhhcchhhhcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHH
Confidence 00 000 0 112346778888999999999999999999999998
Q ss_pred hHHHHHHHHHHHHHHhhhhheeceeeEEEeccccccchhHHHHHHHHHhhhhcccccCCcccccCCCCCCCccccCCcee
Q psy12306 683 NIVLVTCLLQFMFAVIGVQLFKYVVKCVIVAIKTIGNIMLVTYLLSFMFAVMGVQLFKGKFFQCNDGSKMTKAECHGTYL 762 (1643)
Q Consensus 683 nv~lv~~l~~~iFaiiG~~lF~~~~rc~~~~i~~i~~l~~~~~~~~~iFai~Gv~lF~Gk~~~C~d~~~~~~~~C~~~~~ 762 (1643)
..+++++++++. ||++|.-+|+.+
T Consensus 1332 ~F~IIF~IVF~A------------------------------------FAqLG~LLFGt~-------------------- 1355 (1634)
T PLN03223 1332 HFFVIFGMVFVG------------------------------------YAFIGHVIFGNA-------------------- 1355 (1634)
T ss_pred HHHHHHHHHHHH------------------------------------HHHHHHHHhccC--------------------
Confidence 876665555444 666665555432
Q ss_pred eecCCCCCCCccccccccCCccccccHHHHHHHhhhhcccCCchhhhhhhcccccCCCCcccccccceeeEeEEEeehhh
Q psy12306 763 VFSNGKIDEPSIEVREWSKHRFHFDDVAKAMLTLFTVSTFEGWPGLLYNSIDSNLENHGPIHNYRPIVATYYIIYIIIIA 842 (1643)
Q Consensus 763 ~~~~g~~~~~~~~~~~W~~~~~nFDn~~~a~ltLF~v~T~egW~dimy~~~ds~~~~~~P~~~~~~~~~iyFi~fiiig~ 842 (1643)
..+|.+++.|+.|||++++++.+. .+.+.....+ . ...+..+||++|+++..
T Consensus 1356 --------------------ve~FSTf~sSL~TLFqMLLGDfdY-F~eDLk~l~e--~-----nrVLGPIYFfSFILLV~ 1407 (1634)
T PLN03223 1356 --------------------SVHFSDMTDSINSLFENLLGDITY-FNEDLKNLTG--L-----QFVVGMIYFYSYNIFVF 1407 (1634)
T ss_pred --------------------chhhcCHHHHHHHHHHHHHcCchH-HHHHHHhhhc--c-----cchHHHHHHHHHHHHHH
Confidence 126999999999999999987541 1111111110 0 12234589999999999
Q ss_pred HHHHHHHHHHHHHhhhchhhh
Q psy12306 843 FFMVNIFVGFVIVTFQNEGEQ 863 (1643)
Q Consensus 843 ff~lNLfvgvii~~F~~~~e~ 863 (1643)
|++||+|+|+|.+.|++.+++
T Consensus 1408 FILLNMFIAII~DSFsEVK~d 1428 (1634)
T PLN03223 1408 MILFNFLLAIICDAFGEVKAN 1428 (1634)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999876543
No 12
>KOG1545|consensus
Probab=99.43 E-value=1.3e-14 Score=162.87 Aligned_cols=251 Identities=23% Similarity=0.400 Sum_probs=172.1
Q ss_pred CCCccccCcccccceeeeeeec-------cchhhhhhHHHHhhhheeeeeeccC--------------------------
Q psy12306 885 KPVRRYIPKQRLQYKIWWFVTS-------QYFEYTIFCLIMINTLTLAMKFYRQ-------------------------- 931 (1643)
Q Consensus 885 kp~~~~~P~~~~r~~~~~iv~s-------~~Fe~~I~~lIllN~i~la~e~~~~-------------------------- 931 (1643)
||..+..|.|.+|+++|-+.+- +.-.++-.++|+++++..|+|+-++
T Consensus 162 ~~eE~plP~n~fqRqvWlLfEYPeSS~~AR~iAiVSVlVIliSIviFClETlPefrderd~~~~~~~~~~~~~~n~~~~~ 241 (507)
T KOG1545|consen 162 KPEERPLPRNEFQRQVWLLFEYPESSGPARIIAIVSVLVILISIVIFCLETLPEFRDERDLTGHFPAGTGGGVMNPTSGP 241 (507)
T ss_pred CcccccCCcchHHhhhhheeecccccCCeeeeeehhHHHHHHHHHHHHHHhCchhhhhccccccccccCCCcccCCCCCc
Confidence 5556678999999999877542 3345566778899999988875321
Q ss_pred ------ChhHHHHHHHHhHHHHHHHHHHHHHHhhhcccc-cccccccceeehhhHhHHHHHHhcCCCccccccccCCCCC
Q psy12306 932 ------PLFYADILDKMNMFFTTVFALEFVFKLAAFRFK-NYFSDAWNVFDFVIVMGSFIDIFSDSPPHAAAKATIPGSH 1004 (1643)
Q Consensus 932 ------~~~~~~~l~~in~~ft~iF~iE~iLKi~a~g~~-~Yf~~~wNifDfivVi~sii~ii~~~~~~~~~~~~~~g~~ 1004 (1643)
+..+++-+-+++..|.++|++|.++|.+++.-| .||++..|++|++.++.-++.+..++..... .++..
T Consensus 242 ~~~~~~~~~f~dPFFiVEt~CIiWFtfEllvRf~aCPsK~~Ff~nimNiIDiVaI~PyFitlgtela~q~g----~g~~g 317 (507)
T KOG1545|consen 242 ELLDLGDTKFTDPFFIVETLCIIWFTFELLVRFFACPSKATFFRNIMNIIDIVAIIPYFITLGTELAEQQG----GGGQG 317 (507)
T ss_pred ccccccccccCCchHhHHHHHHHHHhHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhc----CCccc
Confidence 011344466889999999999999999988544 7899999999999999999887743322110 01111
Q ss_pred cccCcceeeeeeeehhhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCCCCC
Q psy12306 1005 EQTSGRLSINFFRLFRVMRLIKLLSRGEGIRTLLWTFIKSFQALPYVALLIVMLFFIYAVIGMQVFGKIALVFGGGIHRN 1084 (1643)
Q Consensus 1005 ~~~~~~~~i~~lRl~RvlRllrLi~~~~~lr~Ll~tl~~S~~~L~~v~lLl~l~~fIfAiiGmqlFg~~~~~~~~~i~~~ 1084 (1643)
.|..+...+|++|+.||+|++||-|+.||++.|-+|+..|++.|. +|++.++ ||+-||....+- ...-+..
T Consensus 318 qqaMSlAILRViRLVRVFRIFKLSRHSkGLQILGqTl~aSmrElg---LLIFFlf-----IgviLFsSavYF-AEade~~ 388 (507)
T KOG1545|consen 318 QQAMSLAILRVIRLVRVFRIFKLSRHSKGLQILGQTLRASMRELG---LLIFFLF-----IGVILFSSAVYF-AEADEPE 388 (507)
T ss_pred hhhhhHHHHHHHHHHHHhhheeeccccchHHHHHHHHHHHHHHHH---HHHHHHH-----HHHHHHhceeee-eecCCCc
Confidence 233444457888889999999999999999999999999999874 4443332 799999643221 1223456
Q ss_pred CCCCCHhHHHHhhhccccccccHHHHHhhcCCCCCcccCCCCCCCCCCCCCCCcCcceeeeeeehhhHHHHHHHHHHHHH
Q psy12306 1085 NNFQTFPQAVLVLFRSATGEAWQDIMLDCSNRPSEVKCDAASDGNPTNDDNVSCGSDIAYPYFISFYVLCSFLIINLFVA 1164 (1643)
Q Consensus 1085 ~NF~tf~~A~ltLF~v~Tge~W~~im~~~~~~~~~~~Cd~~~~~~~~~~~~~~Cgs~~a~iyFisf~ii~~fiilNLfVA 1164 (1643)
.+|.++|.|+......+|.-|+.+ |.+... ++.--| +...+...+-+-|-|-
T Consensus 389 S~F~SIPdaFWwavVTMTTVGYGD-m~P~Tv------------------gGKIVG---------slCAiaGVLTiALPVP 440 (507)
T KOG1545|consen 389 SHFSSIPDAFWWAVVTMTTVGYGD-MVPVTV------------------GGKIVG---------SLCAIAGVLTIALPVP 440 (507)
T ss_pred cCCCcCcccceEEEEEEEeecccc-ceeccc------------------Cceehh---------hHHhhhhheEeccccc
Confidence 789988888766666666665554 222110 111111 2344555566889999
Q ss_pred HHHHhhhhhhhc
Q psy12306 1165 VIMDNFDYLTRD 1176 (1643)
Q Consensus 1165 vIidnF~~~~~~ 1176 (1643)
||+.||+|....
T Consensus 441 VIVsNFnyFYhr 452 (507)
T KOG1545|consen 441 VIVSNFNYFYHR 452 (507)
T ss_pred EEEecccceeec
Confidence 999999987643
No 13
>KOG4390|consensus
Probab=99.36 E-value=4.5e-14 Score=159.22 Aligned_cols=186 Identities=19% Similarity=0.268 Sum_probs=152.0
Q ss_pred chhhhHhHHHHHHHHHHHhhccCCCcc--chhhhhhhhhHHHHHHHHHHHhhhhcccccchhhhhHHHHHHHHHHHhhhe
Q psy12306 261 GFYWLIIILVFLNTGVLATEHYQQPKW--LDSFQEVTNIFFVALFTMEMTLKMYSLGFQEVTNIFFVALFTMEMTLKMYS 338 (1643)
Q Consensus 261 ~F~~~i~~~IllN~i~la~e~~~~~~~--~~~~l~~~n~~~~~lf~~e~~~~~~~~~~~~~~~~~f~~iF~iE~iLKi~a 338 (1643)
.|+|++-++|.++++.-.+|+.+.... ....+..++.+-..+|+ ++..|+.||+.|++||+++
T Consensus 186 VFYYVtGFFIAVSVi~NvVETiPCg~~~~~~~e~pCGEry~~aFFc---------------lDTACVmIFT~EYlLRL~a 250 (632)
T KOG4390|consen 186 VFYYVTGFFIAVSVIANVVETIPCGGSPGRSKELPCGERYPVAFFC---------------LDTACVMIFTGEYLLRLFA 250 (632)
T ss_pred hhhhhhhhhhhhhhhhceeeecccCCCCCCceecccccccceeeEE---------------ecceeEEEeeHHHHHHHHc
Confidence 499999999999999999998765432 23445556655555544 4558899999999999999
Q ss_pred eccc-ccccccccccceeeeehhhhhHHhhhccCCCCCcchhhHHHHHhHhhhhhhchHhHHHHHHHHHHHHHHHHHHHH
Q psy12306 339 LGFQ-GYFVSLFNRFDCFVVIGSIGEMILTRTNIMPPLGVSVLRCVRLLRVFKVTKYWRSLSNLVASLLNSIQSIASLLL 417 (1643)
Q Consensus 339 ~G~~-~Yf~~~wNifD~~vvl~sii~lil~~~~~~~~~~l~vLR~~RlLRi~kl~r~~~~l~~L~~ti~~s~~~l~~l~l 417 (1643)
.+-+ +|.++-+.++|.+.+++.++.+++....+.++. .-.||+||++|+||..|++.+||.|..|+.++..+++.+++
T Consensus 251 APsR~rF~RSvMSiIDVvAIlPYYigLv~t~N~DVSGa-FVTLRVFRVFRIFKFSRHSQGLRILGYTLKSCASELGFLlF 329 (632)
T KOG4390|consen 251 APSRYRFLRSVMSIIDVVAILPYYIGLVMTDNEDVSGA-FVTLRVFRVFRIFKFSRHSQGLRILGYTLKSCASELGFLLF 329 (632)
T ss_pred CchHHHHHHHHHHHHHHhhhhhhheEEEecCCccccce-eEEEEeeeeeeeeeecccccccchhhhhHHHHHHHHhHHHH
Confidence 9876 889999999999999999999988776655443 45789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCccccCCCCCCCCCCC----CChhhhhhhheecccCCCCC
Q psy12306 418 LLFLFIVIFALLGMQVFGGKFNFNPTIAKPRSNF----DSFWQSLLTVFQQEQKGQEE 471 (1643)
Q Consensus 418 ll~l~i~iFAilGmqlFgg~~~~~~~~~~~~~nF----d~f~~A~vTlF~iltge~w~ 471 (1643)
-|-+.++|||.+..+-..|. ..++| ..||..++||.++.+||=..
T Consensus 330 SLtMAIIIFATvMfYAEKg~---------~at~FTsIPaaFWYTIVTmTTLGYGDMVp 378 (632)
T KOG4390|consen 330 SLTMAIIIFATVMFYAEKGS---------SATKFTSIPAAFWYTIVTMTTLGYGDMVP 378 (632)
T ss_pred HHHHHHHHHHHHHHhhhccc---------cccccccCcHhHhhheeeeeeccccccch
Confidence 99999999999987666543 12334 45788889999999999554
No 14
>PF08763 Ca_chan_IQ: Voltage gated calcium channel IQ domain; InterPro: IPR014873 Ca2+ ions are unique in that they not only carry charge but they are also the most widely used of diffusible second messengers. Voltage-dependent Ca2+ channels (VDCC) are a family of molecules that allow cells to couple electrical activity to intracellular Ca2+ signalling. The opening and closing of these channels by depolarizing stimuli, such as action potentials, allows Ca2+ ions to enter neurons down a steep electrochemical gradient, producing transient intracellular Ca2+ signals. Many of the processes that occur in neurons, including transmitter release, gene transcription and metabolism are controlled by Ca2+ influx occurring simultaneously at different cellular locales. The pore is formed by the alpha-1 subunit which incorporates the conduction pore, the voltage sensor and gating apparatus, and the known sites of channel regulation by second messengers, drugs, and toxins []. The activity of this pore is modulated by 4 tightly-coupled subunits: an intracellular beta subunit; a transmembrane gamma subunit; and a disulphide-linked complex of alpha-2 and delta subunits, which are proteolytically cleaved from the same gene product. Properties of the protein including gating voltage-dependence, G protein modulation and kinase susceptibility can be influenced by these subunits. Voltage-gated calcium channels are classified as T, L, N, P, Q and R, and are distinguished by their sensitivity to pharmacological blocks, single-channel conductance kinetics, and voltage-dependence. On the basis of their voltage activation properties, the voltage-gated calcium classes can be further divided into two broad groups: the low (T-type) and high (L, N, P, Q and R-type) threshold-activated channels. The voltage-gated calcium channel alpha 1 subunit contains an IQ domain, named for its isoleucine-glutamine (IQ) motif, which interacts with hydrophobic pockets of Ca2+/calmodulin []. The interaction regulates two self-regulatory calcium dependent feedback mechanisms, calcium dependent inactivation (CDI), and calcium-dependent facilitation (CDF). ; PDB: 3OXQ_F 2F3Z_B 3G43_E 2F3Y_B 2BE6_D 3DVM_B 3BXK_D 2VAY_B 3DVK_B 3BXL_B ....
Probab=99.33 E-value=3.1e-13 Score=102.04 Aligned_cols=30 Identities=83% Similarity=1.271 Sum_probs=25.2
Q ss_pred cccccccchhhhhhhHHHHHhhhhhccccc
Q psy12306 1483 EEVTVGKFYATFLIQDYFRRFKKRKEQELK 1512 (1643)
Q Consensus 1483 ~~~tvgk~y~~~~i~~~~r~~~~~~~~~~~ 1512 (1643)
|||||||||||+|||||||+||+||++...
T Consensus 2 d~~TVGK~YAt~lI~dyfr~~K~rk~~~~~ 31 (35)
T PF08763_consen 2 DEVTVGKFYATLLIQDYFRQFKKRKEQEQQ 31 (35)
T ss_dssp --CCCHHHHHHHHHHHHHHHHHHHHHHT--
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 789999999999999999999999987644
No 15
>PF08016 PKD_channel: Polycystin cation channel; InterPro: IPR013122 Polycystic kidney diseases (PKD) are disorders characterised by large numbers of cysts distributed throughout grossly-enlarged kidneys. Cyst development is associated with impairment of kidney function, and ultimately kidney failure and death []. Most cases of autosomal dominant PKD result from mutations in the PKD1 gene that cause premature protein termination. A second gene for autosomal dominant polycystic kidney disease has been identified by positional cloning []. The predicted 968-amino acid sequence of the PKD2 gene product (polycystin-2) contains 6 transmembrane domains, with intracellular N- and C-termini. Polycystin-2 shares some similarity with the family of voltage-activated calcium (and sodium) channels, and contains a potential calcium-binding domain. Polycystin-2 is strongly expressed in ovary, foetal and adult kidney, testis, and small intestine. Polycystin-1 requires the presence of this protein for stable expression and is believed to interact with it via its C terminus. All mutations between exons 1 and 11 result in a truncated polycystin-2 that lacks a calcium-binding EF-hand domain and the cytoplasmic domains required for the interaction of polycystin-2 with polycystin-1 []. PKD2, although clinically milder than PKD1, has a deleterious impact on life expectancy. This entry contains proteins belonging to the polycystin family including Mucolipin and Polycystin-1 and -2 (PKD1 and PKD2). The domain contains the cation channel region of PKD1 and PKD2 proteins. PKD1 and PKD2 may function through a common signalling pathway that is necessary for normal tubulogenesis. The PKD2 gene product has six transmembrane spans with intracellular amino- and carboxyl-termini []. Mucolipin is a cationic channel which probably plays a role in the endocytic pathway and in the control of membrane trafficking of proteins and lipids. It could play a major role in the calcium ion transport regulating lysosomal exocytosis [, , ].
Probab=99.23 E-value=3.2e-11 Score=150.53 Aligned_cols=197 Identities=22% Similarity=0.417 Sum_probs=146.4
Q ss_pred HHHHHhHHHHHHHHHHHHHHhhhcccccccccccceeehhhHhHHHHHHhcCCCc----cccccccCCCCCcccCccee-
Q psy12306 938 ILDKMNMFFTTVFALEFVFKLAAFRFKNYFSDAWNVFDFVIVMGSFIDIFSDSPP----HAAAKATIPGSHEQTSGRLS- 1012 (1643)
Q Consensus 938 ~l~~in~~ft~iF~iE~iLKi~a~g~~~Yf~~~wNifDfivVi~sii~ii~~~~~----~~~~~~~~~g~~~~~~~~~~- 1012 (1643)
+...+-.++.+.|+...+.|+...| ++||++.||++|+++++++++.++..... ........ .+.....+...
T Consensus 212 ~~~i~f~~~~l~~~~~ei~~i~~~g-~~y~~~~WN~~e~~ii~ls~~~i~~~~~~~~~~~~~~~~~~-~~~~~fv~f~~~ 289 (425)
T PF08016_consen 212 LCEILFVLFVLYFLYREIKKIRREG-RAYFKSFWNWLELLIILLSLAVIVLYFYRMILASEALKQYR-ENPRSFVDFQEL 289 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh-hHHhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-ccccccCCHHHH
Confidence 3467778889999999999999888 68999999999999999888766521110 00000000 00000000000
Q ss_pred ----------eeeeeehhhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCCC
Q psy12306 1013 ----------INFFRLFRVMRLIKLLSRGEGIRTLLWTFIKSFQALPYVALLIVMLFFIYAVIGMQVFGKIALVFGGGIH 1082 (1643)
Q Consensus 1013 ----------i~~lRl~RvlRllrLi~~~~~lr~Ll~tl~~S~~~L~~v~lLl~l~~fIfAiiGmqlFg~~~~~~~~~i~ 1082 (1643)
..++-++-.+|++|+++..+.++.+..++..+.+.+...+++++++++.||.+|+-+||..
T Consensus 290 a~~~~~~~~l~a~~vfl~~lrll~~l~f~~~~~~~~~tl~~a~~~l~~f~~~~~i~~~~fa~~g~l~fG~~--------- 360 (425)
T PF08016_consen 290 AQWDQLYRYLLAFLVFLLWLRLLKLLRFNRRLSLLSRTLRRAAKDLLGFFVIFLIIFLAFAQAGYLLFGSY--------- 360 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhheeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC---------
Confidence 1122245678999999999999999999999999999999999999999999999999963
Q ss_pred CCCCCCCHhHHHHhhhccccccc-cHHHHHhhcCCCCCcccCCCCCCCCCCCCCCCcCcceeeeeeehhhHHHHHHHHHH
Q psy12306 1083 RNNNFQTFPQAVLVLFRSATGEA-WQDIMLDCSNRPSEVKCDAASDGNPTNDDNVSCGSDIAYPYFISFYVLCSFLIINL 1161 (1643)
Q Consensus 1083 ~~~NF~tf~~A~ltLF~v~Tge~-W~~im~~~~~~~~~~~Cd~~~~~~~~~~~~~~Cgs~~a~iyFisf~ii~~fiilNL 1161 (1643)
..+|.|+..|+.++|+++-|+. +.++- + .....+.+||++|.++..++++|+
T Consensus 361 -~~~f~s~~~s~~tl~~~l~g~~~~~~~~-----~---------------------~~~~lg~l~~~~~~~~~~~illNl 413 (425)
T PF08016_consen 361 -SEDFSSFSSSLVTLFRMLLGDFDYDELY-----Q---------------------ANPVLGPLFFFSFMFLVFFILLNL 413 (425)
T ss_pred -ccccCCHHHHHHHHHHHhcCCCchhhhh-----c---------------------ccccHHHHHHHHHHHHHHHHHHHH
Confidence 3579999999999999988861 11110 0 012367789999999999999999
Q ss_pred HHHHHHHhhhh
Q psy12306 1162 FVAVIMDNFDY 1172 (1643)
Q Consensus 1162 fVAvIidnF~~ 1172 (1643)
|+|+|.|+|++
T Consensus 414 ~iaIi~~~y~~ 424 (425)
T PF08016_consen 414 FIAIINDSYEE 424 (425)
T ss_pred HHHHHHHHhhc
Confidence 99999999975
No 16
>KOG3599|consensus
Probab=99.20 E-value=3.3e-11 Score=156.02 Aligned_cols=204 Identities=23% Similarity=0.427 Sum_probs=153.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhhcccccccccccceeehhhHhHHHHHHhcCCCcc-c--cccc-cCCCCCcccCcc
Q psy12306 935 YADILDKMNMFFTTVFALEFVFKLAAFRFKNYFSDAWNVFDFVIVMGSFIDIFSDSPPH-A--AAKA-TIPGSHEQTSGR 1010 (1643)
Q Consensus 935 ~~~~l~~in~~ft~iF~iE~iLKi~a~g~~~Yf~~~wNifDfivVi~sii~ii~~~~~~-~--~~~~-~~~g~~~~~~~~ 1010 (1643)
..-....+-++|...|+++-++++.-.+.++|+++.||++|+.++.++++.++...... . .... ...++. ..+
T Consensus 464 ~~~l~~vvf~l~~~yf~~~e~~~i~~~~~~~y~~s~wN~ld~~i~~ls~~~~~~~~~r~~l~~~~l~~~~~~~~---~~f 540 (798)
T KOG3599|consen 464 LIMLCEVVFLLFVLYFAVAEGLKIWIHRLGRYVRSKWNWLDLAIVLLSVVLLVLMITRTGLADGVLTGFERASP---RTF 540 (798)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---ccc
Confidence 34455667788899999999999998887799999999999999999988776222110 0 0000 000100 011
Q ss_pred ee--------------eeeeeehhhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q psy12306 1011 LS--------------INFFRLFRVMRLIKLLSRGEGIRTLLWTFIKSFQALPYVALLIVMLFFIYAVIGMQVFGKIALV 1076 (1643)
Q Consensus 1011 ~~--------------i~~lRl~RvlRllrLi~~~~~lr~Ll~tl~~S~~~L~~v~lLl~l~~fIfAiiGmqlFg~~~~~ 1076 (1643)
.+ ..++-++-.+|++|+++..+.++.+-.|+..+.+++..+++.++++++.||.+|..+||.-
T Consensus 541 ~~F~~~a~~~~~~~~l~a~lvfl~tiK~~k~l~f~~t~~~~s~TL~ra~~~I~gf~l~~~I~~~aya~l~~llfG~~--- 617 (798)
T KOG3599|consen 541 IDFTEVAQWNIAARNLLAFLVFLTTIKLWKVLRFNKTMSQFSSTLSRAWKEIVGFALMFLILFFAYAQLGYLLFGNQ--- 617 (798)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc---
Confidence 11 1112245577899999999999999999999999999999999999999999999999963
Q ss_pred cCCCCCCCCCCCCHhHHHHhhhccccccccHHHHHhhcCCCCCcccCCCCCCCCCCCCCCCcCcceeeeeeehhhHHHHH
Q psy12306 1077 FGGGIHRNNNFQTFPQAVLVLFRSATGEAWQDIMLDCSNRPSEVKCDAASDGNPTNDDNVSCGSDIAYPYFISFYVLCSF 1156 (1643)
Q Consensus 1077 ~~~~i~~~~NF~tf~~A~ltLF~v~Tge~W~~im~~~~~~~~~~~Cd~~~~~~~~~~~~~~Cgs~~a~iyFisf~ii~~f 1156 (1643)
..||.||.+|+.|+++..-|+ .|-+ ....++-..+.+||.++.+++.+
T Consensus 618 -------v~~f~~f~~s~~t~~~~~~G~----------------~~~~---------~i~~~~r~LG~~~~~~~v~~v~~ 665 (798)
T KOG3599|consen 618 -------VSDFRTFVASIVTLLRYILGD----------------FCPA---------EIFHANRILGPLLFLTYVFVVSF 665 (798)
T ss_pred -------cCChHHHHHHHHHHHHHHhcc----------------CCcc---------ccccCCchHHHHHHHHHHHHHHH
Confidence 358999999999999977772 1111 11122334688999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhhc
Q psy12306 1157 LIINLFVAVIMDNFDYLTRD 1176 (1643)
Q Consensus 1157 iilNLfVAvIidnF~~~~~~ 1176 (1643)
+++|||+|+|+|.|++..++
T Consensus 666 illnmF~aiI~~~~~evk~~ 685 (798)
T KOG3599|consen 666 ILLNLFVAIINDTYGEVKAD 685 (798)
T ss_pred HHHHHHHHHHHHhHHHHhHH
Confidence 99999999999999987665
No 17
>KOG4390|consensus
Probab=98.82 E-value=1.5e-10 Score=131.27 Aligned_cols=230 Identities=20% Similarity=0.324 Sum_probs=163.0
Q ss_pred ccccceeeeeeecc-------chhhhhhHHHHhhhheeeeeecc---C---------ChhHHHHHHHHhHHHHHHHHHHH
Q psy12306 894 QRLQYKIWWFVTSQ-------YFEYTIFCLIMINTLTLAMKFYR---Q---------PLFYADILDKMNMFFTTVFALEF 954 (1643)
Q Consensus 894 ~~~r~~~~~iv~s~-------~Fe~~I~~lIllN~i~la~e~~~---~---------~~~~~~~l~~in~~ft~iF~iE~ 954 (1643)
-.+|.++|+..+++ .|.++.-++|.+++++-.+|+-+ . .+.|...+..++..|+.||+.|+
T Consensus 165 ls~rq~mWrAFENPHTst~ALVFYYVtGFFIAVSVi~NvVETiPCg~~~~~~~e~pCGEry~~aFFclDTACVmIFT~EY 244 (632)
T KOG4390|consen 165 LSLRQRMWRAFENPHTSTAALVFYYVTGFFIAVSVIANVVETIPCGGSPGRSKELPCGERYPVAFFCLDTACVMIFTGEY 244 (632)
T ss_pred chHHHHHHHHhcCCCcchhhhhhhhhhhhhhhhhhhhceeeecccCCCCCCceecccccccceeeEEecceeEEEeeHHH
Confidence 34556666655543 58888888899998888887632 1 22356667788999999999999
Q ss_pred HHHhhhccc-ccccccccceeehhhHhHHHHHHhcCCCccccccccCCCCCcccCcceeeeeeeehhhhHHHHHhhcchh
Q psy12306 955 VFKLAAFRF-KNYFSDAWNVFDFVIVMGSFIDIFSDSPPHAAAKATIPGSHEQTSGRLSINFFRLFRVMRLIKLLSRGEG 1033 (1643)
Q Consensus 955 iLKi~a~g~-~~Yf~~~wNifDfivVi~sii~ii~~~~~~~~~~~~~~g~~~~~~~~~~i~~lRl~RvlRllrLi~~~~~ 1033 (1643)
+||+++..- -+|.++...++|.+.++.-.++++..-+.. . +.. .-.+|+|||+|++|.-|+.+|
T Consensus 245 lLRL~aAPsR~rF~RSvMSiIDVvAIlPYYigLv~t~N~D------V-------SGa--FVTLRVFRVFRIFKFSRHSQG 309 (632)
T KOG4390|consen 245 LLRLFAAPSRYRFLRSVMSIIDVVAILPYYIGLVMTDNED------V-------SGA--FVTLRVFRVFRIFKFSRHSQG 309 (632)
T ss_pred HHHHHcCchHHHHHHHHHHHHHHhhhhhhheEEEecCCcc------c-------cce--eEEEEeeeeeeeeeecccccc
Confidence 999988642 256788888888888888777776211110 0 111 235789999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCCCCCCCCCCHhHHHHhhhccccccccHHHHHhh
Q psy12306 1034 IRTLLWTFIKSFQALPYVALLIVMLFFIYAVIGMQVFGKIALVFGGGIHRNNNFQTFPQAVLVLFRSATGEAWQDIMLDC 1113 (1643)
Q Consensus 1034 lr~Ll~tl~~S~~~L~~v~lLl~l~~fIfAiiGmqlFg~~~~~~~~~i~~~~NF~tf~~A~ltLF~v~Tge~W~~im~~~ 1113 (1643)
+|.|-.|+......|..++.-+.|.+.|||.+...--.+. ...+|.++|.|+.--...+|.=|+.+....+
T Consensus 310 LRILGYTLKSCASELGFLlFSLtMAIIIFATvMfYAEKg~---------~at~FTsIPaaFWYTIVTmTTLGYGDMVp~T 380 (632)
T KOG4390|consen 310 LRILGYTLKSCASELGFLLFSLTMAIIIFATVMFYAEKGS---------SATKFTSIPAAFWYTIVTMTTLGYGDMVPST 380 (632)
T ss_pred cchhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhccc---------cccccccCcHhHhhheeeeeeccccccchHH
Confidence 9999999999999998887777888888888754333221 3468999999997777777777776654443
Q ss_pred cCCCCCcccCCCCCCCCCCCCCCCcCcceeeeeeehhhHHHHHHHHHHHHHHHHHhhhhhhh
Q psy12306 1114 SNRPSEVKCDAASDGNPTNDDNVSCGSDIAYPYFISFYVLCSFLIINLFVAVIMDNFDYLTR 1175 (1643)
Q Consensus 1114 ~~~~~~~~Cd~~~~~~~~~~~~~~Cgs~~a~iyFisf~ii~~fiilNLfVAvIidnF~~~~~ 1175 (1643)
+... -|-+-.-++..+++-|.|-||+.||+....
T Consensus 381 IaGK----------------------------IfGsiCSLSGVLVIALPVPvIVSNFSRIYH 414 (632)
T KOG4390|consen 381 IAGK----------------------------IFGSICSLSGVLVIALPVPVIVSNFSRIYH 414 (632)
T ss_pred HHHH----------------------------HhhhhhcccceEEEeccccEEEechhHHHh
Confidence 3221 222223344456678899999999986543
No 18
>PF08016 PKD_channel: Polycystin cation channel; InterPro: IPR013122 Polycystic kidney diseases (PKD) are disorders characterised by large numbers of cysts distributed throughout grossly-enlarged kidneys. Cyst development is associated with impairment of kidney function, and ultimately kidney failure and death []. Most cases of autosomal dominant PKD result from mutations in the PKD1 gene that cause premature protein termination. A second gene for autosomal dominant polycystic kidney disease has been identified by positional cloning []. The predicted 968-amino acid sequence of the PKD2 gene product (polycystin-2) contains 6 transmembrane domains, with intracellular N- and C-termini. Polycystin-2 shares some similarity with the family of voltage-activated calcium (and sodium) channels, and contains a potential calcium-binding domain. Polycystin-2 is strongly expressed in ovary, foetal and adult kidney, testis, and small intestine. Polycystin-1 requires the presence of this protein for stable expression and is believed to interact with it via its C terminus. All mutations between exons 1 and 11 result in a truncated polycystin-2 that lacks a calcium-binding EF-hand domain and the cytoplasmic domains required for the interaction of polycystin-2 with polycystin-1 []. PKD2, although clinically milder than PKD1, has a deleterious impact on life expectancy. This entry contains proteins belonging to the polycystin family including Mucolipin and Polycystin-1 and -2 (PKD1 and PKD2). The domain contains the cation channel region of PKD1 and PKD2 proteins. PKD1 and PKD2 may function through a common signalling pathway that is necessary for normal tubulogenesis. The PKD2 gene product has six transmembrane spans with intracellular amino- and carboxyl-termini []. Mucolipin is a cationic channel which probably plays a role in the endocytic pathway and in the control of membrane trafficking of proteins and lipids. It could play a major role in the calcium ion transport regulating lysosomal exocytosis [, , ].
Probab=98.67 E-value=1.2e-08 Score=127.76 Aligned_cols=188 Identities=19% Similarity=0.359 Sum_probs=130.4
Q ss_pred hhHHHHHHhhhhchhhhHhhhhhheeeEEEeceecCcccccccCCcccEEEehhhhHHHhhc----------------c-
Q psy12306 578 FGNAILFLGYFDNFFTAVFTIEILLKIISYGFILHDGAFCRSSFNLLDLLVVIVSVVAIYWN----------------S- 640 (1643)
Q Consensus 578 F~~~Il~L~~~d~ift~iF~iE~~lKiia~G~~~~~~~Y~r~~WN~lDf~vVi~sli~~~~~----------------~- 640 (1643)
++.++++.+.+=.++.+.|+..-+.|+...|. +|+++.||++|++++++++..++.. .
T Consensus 206 ~~~~~~~~~i~f~~~~l~~~~~ei~~i~~~g~-----~y~~~~WN~~e~~ii~ls~~~i~~~~~~~~~~~~~~~~~~~~~ 280 (425)
T PF08016_consen 206 FDYFVLLCEILFVLFVLYFLYREIKKIRREGR-----AYFKSFWNWLELLIILLSLAVIVLYFYRMILASEALKQYRENP 280 (425)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----HHhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Confidence 44455555666667888999999999988884 8999999999999999888776421 0
Q ss_pred ---cchh----------HH-HHHHHhhhhhhhhhhhcccChhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhhheece
Q psy12306 641 ---AAIA----------FV-KILRVLRVLRPLRAINRAKGLKHVVQCVIVAVKTIGNIVLVTCLLQFMFAVIGVQLFKYV 706 (1643)
Q Consensus 641 ---~~ls----------~l-r~lR~lRvLRpLR~i~~~~~lk~vv~~l~~si~~i~nv~lv~~l~~~iFaiiG~~lF~~~ 706 (1643)
.++. .+ -.+=.+-.+|.+|+++..|.+..+..++.+|.+.+...+++.+++++
T Consensus 281 ~~fv~f~~~a~~~~~~~~l~a~~vfl~~lrll~~l~f~~~~~~~~~tl~~a~~~l~~f~~~~~i~~~------------- 347 (425)
T PF08016_consen 281 RSFVDFQELAQWDQLYRYLLAFLVFLLWLRLLKLLRFNRRLSLLSRTLRRAAKDLLGFFVIFLIIFL------------- 347 (425)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeecchHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------
Confidence 0110 00 11122334566666666788889999999999988776554444443
Q ss_pred eeEEEeccccccchhHHHHHHHHHhhhhcccccCCcccccCCCCCCCccccCCceeeecCCCCCCCccccccccCCcccc
Q psy12306 707 VKCVIVAIKTIGNIMLVTYLLSFMFAVMGVQLFKGKFFQCNDGSKMTKAECHGTYLVFSNGKIDEPSIEVREWSKHRFHF 786 (1643)
Q Consensus 707 ~rc~~~~i~~i~~l~~~~~~~~~iFai~Gv~lF~Gk~~~C~d~~~~~~~~C~~~~~~~~~g~~~~~~~~~~~W~~~~~nF 786 (1643)
.||..|.-+|+.. ..+|
T Consensus 348 -----------------------~fa~~g~l~fG~~----------------------------------------~~~f 364 (425)
T PF08016_consen 348 -----------------------AFAQAGYLLFGSY----------------------------------------SEDF 364 (425)
T ss_pred -----------------------HHHHHHHHhhcCC----------------------------------------cccc
Confidence 4666666666431 1269
Q ss_pred ccHHHHHHHhhhhcccCCchhhhhhhcccccCCCCcccccccceeeEeEEEeehhhHHHHHHHHHHHHHhhhc
Q psy12306 787 DDVAKAMLTLFTVSTFEGWPGLLYNSIDSNLENHGPIHNYRPIVATYYIIYIIIIAFFMVNIFVGFVIVTFQN 859 (1643)
Q Consensus 787 Dn~~~a~ltLF~v~T~egW~dimy~~~ds~~~~~~P~~~~~~~~~iyFi~fiiig~ff~lNLfvgvii~~F~~ 859 (1643)
.++..|+.|+|...-++ .-|..+.+.+ .....+||++|+++..++++|+|+|++.++|++
T Consensus 365 ~s~~~s~~tl~~~l~g~----~~~~~~~~~~---------~~lg~l~~~~~~~~~~~illNl~iaIi~~~y~~ 424 (425)
T PF08016_consen 365 SSFSSSLVTLFRMLLGD----FDYDELYQAN---------PVLGPLFFFSFMFLVFFILLNLFIAIINDSYEE 424 (425)
T ss_pred CCHHHHHHHHHHHhcCC----Cchhhhhccc---------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999988765 2232222211 122347899999999999999999999999974
No 19
>KOG3599|consensus
Probab=98.67 E-value=1.1e-08 Score=133.13 Aligned_cols=193 Identities=21% Similarity=0.294 Sum_probs=134.3
Q ss_pred chhHHHHHHhhhhchhhhHhhhhhheeeEEEeceecCcccccccCCcccEEEehhhhHHHhhcc----------------
Q psy12306 577 HFGNAILFLGYFDNFFTAVFTIEILLKIISYGFILHDGAFCRSSFNLLDLLVVIVSVVAIYWNS---------------- 640 (1643)
Q Consensus 577 ~F~~~Il~L~~~d~ift~iF~iE~~lKiia~G~~~~~~~Y~r~~WN~lDf~vVi~sli~~~~~~---------------- 640 (1643)
.+..++++.+.+=++|...|+++-+.||--++. ++|+++.||++|+.|++++++.++...
T Consensus 460 ~~~~~~~l~~vvf~l~~~yf~~~e~~~i~~~~~----~~y~~s~wN~ld~~i~~ls~~~~~~~~~r~~l~~~~l~~~~~~ 535 (798)
T KOG3599|consen 460 AGSSLIMLCEVVFLLFVLYFAVAEGLKIWIHRL----GRYVRSKWNWLDLAIVLLSVVLLVLMITRTGLADGVLTGFERA 535 (798)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH----HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344555556666777889999999999865554 489999999999999999988775310
Q ss_pred -----cch----------hHHH-HHHHhhhhhhhhhhhcccChhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhhhee
Q psy12306 641 -----AAI----------AFVK-ILRVLRVLRPLRAINRAKGLKHVVQCVIVAVKTIGNIVLVTCLLQFMFAVIGVQLFK 704 (1643)
Q Consensus 641 -----~~l----------s~lr-~lR~lRvLRpLR~i~~~~~lk~vv~~l~~si~~i~nv~lv~~l~~~iFaiiG~~lF~ 704 (1643)
.++ +.+. .+-.|-.+|..|.++.++-++..-.+|-+|.|.|....++..++++
T Consensus 536 ~~~~f~~F~~~a~~~~~~~~l~a~lvfl~tiK~~k~l~f~~t~~~~s~TL~ra~~~I~gf~l~~~I~~~----------- 604 (798)
T KOG3599|consen 536 SPRTFIDFTEVAQWNIAARNLLAFLVFLTTIKLWKVLRFNKTMSQFSSTLSRAWKEIVGFALMFLILFF----------- 604 (798)
T ss_pred CCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------
Confidence 000 0011 1122334455666666778888888899999988766555444443
Q ss_pred ceeeEEEeccccccchhHHHHHHHHHhhhhcccccCCcccccCCCCCCCccccCCceeeecCCCCCCCccccccccCCcc
Q psy12306 705 YVVKCVIVAIKTIGNIMLVTYLLSFMFAVMGVQLFKGKFFQCNDGSKMTKAECHGTYLVFSNGKIDEPSIEVREWSKHRF 784 (1643)
Q Consensus 705 ~~~rc~~~~i~~i~~l~~~~~~~~~iFai~Gv~lF~Gk~~~C~d~~~~~~~~C~~~~~~~~~g~~~~~~~~~~~W~~~~~ 784 (1643)
.||++|..+|+.+ --
T Consensus 605 -------------------------aya~l~~llfG~~----------------------------------------v~ 619 (798)
T KOG3599|consen 605 -------------------------AYAQLGYLLFGNQ----------------------------------------VS 619 (798)
T ss_pred -------------------------HHHHHHHHHcCCc----------------------------------------cC
Confidence 4666676666421 12
Q ss_pred ccccHHHHHHHhhhhcccCCchhhhhhhcccccCCCCcccccccceeeEeEEEeehhhHHHHHHHHHHHHHhhhchhh
Q psy12306 785 HFDDVAKAMLTLFTVSTFEGWPGLLYNSIDSNLENHGPIHNYRPIVATYYIIYIIIIAFFMVNIFVGFVIVTFQNEGE 862 (1643)
Q Consensus 785 nFDn~~~a~ltLF~v~T~egW~dimy~~~ds~~~~~~P~~~~~~~~~iyFi~fiiig~ff~lNLfvgvii~~F~~~~e 862 (1643)
||.|+.+|+.|++..+-+ ++-+..+...+. ....+||.+|+++++++++|||+|+|.+.|++.+.
T Consensus 620 ~f~~f~~s~~t~~~~~~G----~~~~~~i~~~~r---------~LG~~~~~~~v~~v~~illnmF~aiI~~~~~evk~ 684 (798)
T KOG3599|consen 620 DFRTFVASIVTLLRYILG----DFCPAEIFHANR---------ILGPLLFLTYVFVVSFILLNLFVAIINDTYGEVKA 684 (798)
T ss_pred ChHHHHHHHHHHHHHHhc----cCCccccccCCc---------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhH
Confidence 799999999999988766 333333333222 22346999999999999999999999999987654
No 20
>KOG1419|consensus
Probab=98.66 E-value=8.2e-08 Score=114.90 Aligned_cols=149 Identities=17% Similarity=0.297 Sum_probs=104.2
Q ss_pred hhhhhHHHHHHHHHHHhhheeccc----------ccccccccccceeeeehhhhhHHhhhc-cCCCCCcchhhHHHHHhH
Q psy12306 319 VTNIFFVALFTMEMTLKMYSLGFQ----------GYFVSLFNRFDCFVVIGSIGEMILTRT-NIMPPLGVSVLRCVRLLR 387 (1643)
Q Consensus 319 ~~~~~f~~iF~iE~iLKi~a~G~~----------~Yf~~~wNifD~~vvl~sii~lil~~~-~~~~~~~l~vLR~~RlLR 387 (1643)
+.|++.+++|.+|+++|+|+.|.. +|-+++..++|.+|++.|++.+..... ++.....++.||.+.+||
T Consensus 129 ~LEiv~IV~Fg~EfivRlWSAGC~~rYrG~~GRLrFarkp~cvIDiivi~Asi~vl~~g~qG~vfatSalrslRFlQILR 208 (654)
T KOG1419|consen 129 ILEIVMIVFFGLEFIVRLWSAGCCCRYRGWYGRLRFARKPFCVIDIIVIIASIAVLAAGSQGNVFATSALRSLRFLQILR 208 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccccccceeeEEeecCCceEEEEeeeeeeeeEEEecCccceeehhhhhhhHHHHHHH
Confidence 467888999999999999999762 577899999999999999887766532 233344578888888888
Q ss_pred hhhhhhchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccCCCCCCCCCCC----CChhhhhhhhee
Q psy12306 388 VFKVTKYWRSLSNLVASLLNSIQSIASLLLLLFLFIVIFALLGMQVFGGKFNFNPTIAKPRSNF----DSFWQSLLTVFQ 463 (1643)
Q Consensus 388 i~kl~r~~~~l~~L~~ti~~s~~~l~~l~lll~l~i~iFAilGmqlFgg~~~~~~~~~~~~~nF----d~f~~A~vTlF~ 463 (1643)
++|.=|.--+.+.|.+.+..--+++..-..+=|+. .||+..-+++-.....- +..+..| |..||..+||-+
T Consensus 209 mlr~DRrggTWKLLGSvV~aH~~ELiTt~YIGFL~-LIfsSflVYLaEKd~~~----e~~n~~F~TyADALWWG~ITltT 283 (654)
T KOG1419|consen 209 MLRMDRRGGTWKLLGSVVYAHSKELITTWYIGFLV-LIFSSFLVYLAEKDAQG----EGTNDEFPTYADALWWGVITLTT 283 (654)
T ss_pred HHHhhccCchhhhhhhhhhhhHHHHHHHHHHHHHH-HHHHHHHHHHhhccccc----ccccccchhHHHHHHhhheeEEe
Confidence 88888776666666666666666665444443333 34555555554432111 1123333 568999999999
Q ss_pred cccCC----CCCC
Q psy12306 464 QEQKG----QEES 472 (1643)
Q Consensus 464 iltge----~w~~ 472 (1643)
|.+|| .|..
T Consensus 284 IGYGDk~P~TWlG 296 (654)
T KOG1419|consen 284 IGYGDKTPQTWLG 296 (654)
T ss_pred eccCCcCcccchh
Confidence 99999 5654
No 21
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=98.37 E-value=3.3e-07 Score=122.97 Aligned_cols=213 Identities=11% Similarity=0.115 Sum_probs=134.5
Q ss_pred HHHhHHHHHHHHHHHHHHhhhcccccccccccceeehhhHhHHHHHHhc---CCCc-cccccccCCCCCcccCcce---e
Q psy12306 940 DKMNMFFTTVFALEFVFKLAAFRFKNYFSDAWNVFDFVIVMGSFIDIFS---DSPP-HAAAKATIPGSHEQTSGRL---S 1012 (1643)
Q Consensus 940 ~~in~~ft~iF~iE~iLKi~a~g~~~Yf~~~wNifDfivVi~sii~ii~---~~~~-~~~~~~~~~g~~~~~~~~~---~ 1012 (1643)
+.+-..+..-+..+....++..|...|+++.||.+|++.....+..++. .... ..............+.... .
T Consensus 392 e~~~~~~~~~~~~~e~~~~~~~g~~~y~~~~wn~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 471 (743)
T TIGR00870 392 EMLIVTWVDGLRLGEEKLIWLGGIFEYIHQLWNILDFGMNSFYLATFLDRPFAILFVTQAFLVLREHWLRFDPTLIEEAL 471 (743)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhhhhhhhhhcccCchhHHHHH
Confidence 3344555566777777777777887899999999999665544443321 0000 0000000000000000000 1
Q ss_pred eeeeeehhhhHHHHHhhcchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCC---------C
Q psy12306 1013 INFFRLFRVMRLIKLLSRGEGIRTLLWTFIKSFQ-ALPYVALLIVMLFFIYAVIGMQVFGKIALVFGGGI---------H 1082 (1643)
Q Consensus 1013 i~~lRl~RvlRllrLi~~~~~lr~Ll~tl~~S~~-~L~~v~lLl~l~~fIfAiiGmqlFg~~~~~~~~~i---------~ 1082 (1643)
+.+.-++..+|++.+++..+.+--+..++.+.+. .+..++++++++++-||+...++|+......+... .
T Consensus 472 ~a~~~~l~~~rll~~~~~~~~lGp~~i~l~~mi~~dl~~F~~i~~v~l~aF~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 551 (743)
T TIGR00870 472 FAFALVLSWLNLLYIFRGNQHLGPLQIMIGRMILGDILRFLFIYAVVLFGFACGLNQLYQYYDELKLNECSNPHARSCEK 551 (743)
T ss_pred HHHHHHHHHHHHHHHHhhchhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccc
Confidence 1222345566666666666666667777888888 99999999999999999999999975321111000 1
Q ss_pred CCCCCCCHhHHHHhhhccccccccHHHHHhhcCCCCCcccCCCCCCCCCCCCCCCcCcceeeeeeehhhHHHHHHHHHHH
Q psy12306 1083 RNNNFQTFPQAVLVLFRSATGEAWQDIMLDCSNRPSEVKCDAASDGNPTNDDNVSCGSDIAYPYFISFYVLCSFLIINLF 1162 (1643)
Q Consensus 1083 ~~~NF~tf~~A~ltLF~v~Tge~W~~im~~~~~~~~~~~Cd~~~~~~~~~~~~~~Cgs~~a~iyFisf~ii~~fiilNLf 1162 (1643)
....|.++..++.+||..+-|++-. . .. .| .....++.++|++|.++.+.+++||+
T Consensus 552 ~~~~f~~~~~s~~~lf~~~~G~~~~------~-~~---~~--------------~~~~~~~~il~~~y~~i~~ilLlNlL 607 (743)
T TIGR00870 552 QGNAYSTLFETSQELFWAIIGLGDL------L-AN---EH--------------KFTEFVGLLLFGAYNVIMYILLLNML 607 (743)
T ss_pred ccccccCHHHHHHHHHHHHcCCccc------c-cc---cc--------------cchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 2368999999999999887776321 0 00 00 01124788899999999999999999
Q ss_pred HHHHHHhhhhhhhc
Q psy12306 1163 VAVIMDNFDYLTRD 1176 (1643)
Q Consensus 1163 VAvIidnF~~~~~~ 1176 (1643)
||++-+.|+...++
T Consensus 608 IAmm~~t~~~v~~~ 621 (743)
T TIGR00870 608 IAMMGNTYQLIADD 621 (743)
T ss_pred HHHHHhHHHHHHhh
Confidence 99999999976544
No 22
>PF08763 Ca_chan_IQ: Voltage gated calcium channel IQ domain; InterPro: IPR014873 Ca2+ ions are unique in that they not only carry charge but they are also the most widely used of diffusible second messengers. Voltage-dependent Ca2+ channels (VDCC) are a family of molecules that allow cells to couple electrical activity to intracellular Ca2+ signalling. The opening and closing of these channels by depolarizing stimuli, such as action potentials, allows Ca2+ ions to enter neurons down a steep electrochemical gradient, producing transient intracellular Ca2+ signals. Many of the processes that occur in neurons, including transmitter release, gene transcription and metabolism are controlled by Ca2+ influx occurring simultaneously at different cellular locales. The pore is formed by the alpha-1 subunit which incorporates the conduction pore, the voltage sensor and gating apparatus, and the known sites of channel regulation by second messengers, drugs, and toxins []. The activity of this pore is modulated by 4 tightly-coupled subunits: an intracellular beta subunit; a transmembrane gamma subunit; and a disulphide-linked complex of alpha-2 and delta subunits, which are proteolytically cleaved from the same gene product. Properties of the protein including gating voltage-dependence, G protein modulation and kinase susceptibility can be influenced by these subunits. Voltage-gated calcium channels are classified as T, L, N, P, Q and R, and are distinguished by their sensitivity to pharmacological blocks, single-channel conductance kinetics, and voltage-dependence. On the basis of their voltage activation properties, the voltage-gated calcium classes can be further divided into two broad groups: the low (T-type) and high (L, N, P, Q and R-type) threshold-activated channels. The voltage-gated calcium channel alpha 1 subunit contains an IQ domain, named for its isoleucine-glutamine (IQ) motif, which interacts with hydrophobic pockets of Ca2+/calmodulin []. The interaction regulates two self-regulatory calcium dependent feedback mechanisms, calcium dependent inactivation (CDI), and calcium-dependent facilitation (CDF). ; PDB: 3OXQ_F 2F3Z_B 3G43_E 2F3Y_B 2BE6_D 3DVM_B 3BXK_D 2VAY_B 3DVK_B 3BXL_B ....
Probab=98.22 E-value=1.1e-06 Score=67.15 Aligned_cols=30 Identities=83% Similarity=1.271 Sum_probs=25.2
Q ss_pred cceeehhHHHHHHHHHHHHHHHHHHHHhhh
Q psy12306 1303 EEVTVGKFYATFLIQDYFRRFKKRKEQELK 1332 (1643)
Q Consensus 1303 ~~~tv~~~~a~~~I~~~fr~f~~~~~~~~~ 1332 (1643)
+++|||+||||++||++||+|+++++++..
T Consensus 2 d~~TVGK~YAt~lI~dyfr~~K~rk~~~~~ 31 (35)
T PF08763_consen 2 DEVTVGKFYATLLIQDYFRQFKKRKEQEQQ 31 (35)
T ss_dssp --CCCHHHHHHHHHHHHHHHHHHHHHHT--
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 679999999999999999999999998754
No 23
>KOG1419|consensus
Probab=97.83 E-value=1.4e-05 Score=96.35 Aligned_cols=165 Identities=18% Similarity=0.343 Sum_probs=97.0
Q ss_pred hhhhhhHHHHhhhheeeeeeccCCh-hHHHHHHHHhHHHHHHHHHHHHHHhhhccc----------ccccccccceeehh
Q psy12306 909 FEYTIFCLIMINTLTLAMKFYRQPL-FYADILDKMNMFFTTVFALEFVFKLAAFRF----------KNYFSDAWNVFDFV 977 (1643)
Q Consensus 909 Fe~~I~~lIllN~i~la~e~~~~~~-~~~~~l~~in~~ft~iF~iE~iLKi~a~g~----------~~Yf~~~wNifDfi 977 (1643)
+..+++++++.+.++-++.+.++.+ ..+.++.+++.++.++|.+|+++|+++.|- -+|-+.+..++|++
T Consensus 96 YH~~VFllVl~CLILsV~STi~e~~~~a~~~L~~LEiv~IV~Fg~EfivRlWSAGC~~rYrG~~GRLrFarkp~cvIDii 175 (654)
T KOG1419|consen 96 YHFFVFLLVLSCLILSVLSTIEEYEKLASGILYILEIVMIVFFGLEFIVRLWSAGCCCRYRGWYGRLRFARKPFCVIDII 175 (654)
T ss_pred HHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccceeeEEeecCCceEEEEe
Confidence 4455555555555554544443332 346789999999999999999999988642 26778999999999
Q ss_pred hHhHHHHHHhcCCCccccccccCCCCCcccCcceeeeeeeehhhhHHHHHhhcchhHHHHHHHHHHHHHHH---HHHHHH
Q psy12306 978 IVMGSFIDIFSDSPPHAAAKATIPGSHEQTSGRLSINFFRLFRVMRLIKLLSRGEGIRTLLWTFIKSFQAL---PYVALL 1054 (1643)
Q Consensus 978 vVi~sii~ii~~~~~~~~~~~~~~g~~~~~~~~~~i~~lRl~RvlRllrLi~~~~~lr~Ll~tl~~S~~~L---~~v~lL 1054 (1643)
|++.|++-+..... |+- -....++.+|.+.++|++|+=|+.-..+.|-..+..--+.| .||++|
T Consensus 176 vi~Asi~vl~~g~q----------G~v---fatSalrslRFlQILRmlr~DRrggTWKLLGSvV~aH~~ELiTt~YIGFL 242 (654)
T KOG1419|consen 176 VIIASIAVLAAGSQ----------GNV---FATSALRSLRFLQILRMLRMDRRGGTWKLLGSVVYAHSKELITTWYIGFL 242 (654)
T ss_pred eeeeeeeEEEecCc----------cce---eehhhhhhhHHHHHHHHHHhhccCchhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 99988765542211 211 11112556666666677766666544433322222222333 333332
Q ss_pred HHHHHHHHHHHHHHhhcccccccCCCCCCCCCCCCHhHHH
Q psy12306 1055 IVMLFFIYAVIGMQVFGKIALVFGGGIHRNNNFQTFPQAV 1094 (1643)
Q Consensus 1055 l~l~~fIfAiiGmqlFg~~~~~~~~~i~~~~NF~tf~~A~ 1094 (1643)
..||+-.-+.+=.+- ..+...+..|.|+..|+
T Consensus 243 ----~LIfsSflVYLaEKd----~~~e~~n~~F~TyADAL 274 (654)
T KOG1419|consen 243 ----VLIFSSFLVYLAEKD----AQGEGTNDEFPTYADAL 274 (654)
T ss_pred ----HHHHHHHHHHHhhcc----cccccccccchhHHHHH
Confidence 234454444444332 12234466899888876
No 24
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=97.65 E-value=1.9e-05 Score=106.23 Aligned_cols=68 Identities=13% Similarity=0.164 Sum_probs=49.7
Q ss_pred cccccHHHHHHHhhhhcccCCchhhhhhhcccccCCCCcccccccceeeEeEEEeehhhHHHHHHHHHHHHHhhhchhhh
Q psy12306 784 FHFDDVAKAMLTLFTVSTFEGWPGLLYNSIDSNLENHGPIHNYRPIVATYYIIYIIIIAFFMVNIFVGFVIVTFQNEGEQ 863 (1643)
Q Consensus 784 ~nFDn~~~a~ltLF~v~T~egW~dimy~~~ds~~~~~~P~~~~~~~~~iyFi~fiiig~ff~lNLfvgvii~~F~~~~e~ 863 (1643)
..|.++..++.++|..+=+++ |. .+. .+. .+..+..+.|++|+++.+++++||++|++.++|++..++
T Consensus 554 ~~f~~~~~s~~~lf~~~~G~~--~~----~~~-----~~~-~~~~~~~il~~~y~~i~~ilLlNlLIAmm~~t~~~v~~~ 621 (743)
T TIGR00870 554 NAYSTLFETSQELFWAIIGLG--DL----LAN-----EHK-FTEFVGLLLFGAYNVIMYILLLNMLIAMMGNTYQLIADD 621 (743)
T ss_pred ccccCHHHHHHHHHHHHcCCc--cc----ccc-----ccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhh
Confidence 479999999999997766553 22 010 111 112344578999999999999999999999999876554
No 25
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=97.49 E-value=0.00028 Score=95.89 Aligned_cols=181 Identities=15% Similarity=0.121 Sum_probs=92.4
Q ss_pred chhhhHhHHHHHHHHHHHhhccCCCccchhhhhhhhhHHHHHHHHHHHhhhhcccccchhhhhHHHHHHHHHHHhhhee-
Q psy12306 261 GFYWLIIILVFLNTGVLATEHYQQPKWLDSFQEVTNIFFVALFTMEMTLKMYSLGFQEVTNIFFVALFTMEMTLKMYSL- 339 (1643)
Q Consensus 261 ~F~~~i~~~IllN~i~la~e~~~~~~~~~~~l~~~n~~~~~lf~~e~~~~~~~~~~~~~~~~~f~~iF~iE~iLKi~a~- 339 (1643)
.++.++.++++.+.+++-.+..-.+..... ...++++++.++|.+|++++....
T Consensus 63 ~Wd~~~~~~~~y~~~~~p~~~~F~~~~~~~-------------------------~~~~~d~i~~~~F~iDi~l~f~~ay 117 (823)
T PLN03192 63 WWETLMVVLVAYSAWVYPFEVAFLNASPKR-------------------------GLEIADNVVDLFFAVDIVLTFFVAY 117 (823)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHeeCCCCCC-------------------------CeeeHHHHHHHHHHHHHHhheeEEE
Confidence 467788888888887766543221111010 113356667777999999997554
Q ss_pred -----c---------ccccccccccccceeeeehhhhhHHhhhccCCCCCcchhhHHHHHhHhhhhhhchHhHHHHHHHH
Q psy12306 340 -----G---------FQGYFVSLFNRFDCFVVIGSIGEMILTRTNIMPPLGVSVLRCVRLLRVFKVTKYWRSLSNLVASL 405 (1643)
Q Consensus 340 -----G---------~~~Yf~~~wNifD~~vvl~sii~lil~~~~~~~~~~l~vLR~~RlLRi~kl~r~~~~l~~L~~ti 405 (1643)
+ .++|++ .|-++|++.++|..+-..+..........++.+|.+|++|+.|+.+....++.-...-
T Consensus 118 ~d~~~~~lV~d~~~I~~~Yl~-~~f~~Dlis~lP~~~i~~~~~~~~~~~~~~~~l~llrl~Rl~ri~~~~~~le~~~~~~ 196 (823)
T PLN03192 118 IDPRTQLLVRDRKKIAVRYLS-TWFLMDVASTIPFQALAYLITGTVKLNLSYSLLGLLRFWRLRRVKQLFTRLEKDIRFS 196 (823)
T ss_pred EeCCCcEEEeCHHHHHHHHHH-HhHHHHHHHHhHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 1 136775 4779999988886432222111111111234455555555555544444443322111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccCCCC--CCCCCCCC----------ChhhhhhhheecccCCC
Q psy12306 406 LNSIQSIASLLLLLFLFIVIFALLGMQVFGGKFNFNPTI--AKPRSNFD----------SFWQSLLTVFQQEQKGQ 469 (1643)
Q Consensus 406 ~~s~~~l~~l~lll~l~i~iFAilGmqlFgg~~~~~~~~--~~~~~nFd----------~f~~A~vTlF~iltge~ 469 (1643)
. ..-.+..++++++++.-.+|.+.+.+. ......+.+ +....||. +++||++|+.+|++||=
T Consensus 197 ~-~~~~~~kli~~~l~~~H~~aC~~y~i~-~~~~~~~~~Wi~~~~~~~~~~s~~~~Yi~slYwai~TmtTVGYGDi 270 (823)
T PLN03192 197 Y-FWIRCARLLSVTLFLVHCAGCLYYLIA-DRYPHQGKTWIGAVIPNFRETSLWIRYISAIYWSITTMTTVGYGDL 270 (823)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHH-hhcCCCCCchHHHhhhccccCcHHHHHHHHHHHHHHHHhhccCCCc
Confidence 0 111233344444444444555544432 211111100 00013444 49999999999999984
No 26
>KOG3609|consensus
Probab=97.11 E-value=0.00054 Score=87.52 Aligned_cols=219 Identities=12% Similarity=0.191 Sum_probs=132.5
Q ss_pred HHHHHhHHHHHHHHHHHHHHhhhcccccccccccceeehhhHhHHHHHHhcCCCc----cccccccCCC--CCcccCcce
Q psy12306 938 ILDKMNMFFTTVFALEFVFKLAAFRFKNYFSDAWNVFDFVIVMGSFIDIFSDSPP----HAAAKATIPG--SHEQTSGRL 1011 (1643)
Q Consensus 938 ~l~~in~~ft~iF~iE~iLKi~a~g~~~Yf~~~wNifDfivVi~sii~ii~~~~~----~~~~~~~~~g--~~~~~~~~~ 1011 (1643)
.++++=+..+.=++.|-+-.++.-|++.|+++.||++||....+-+..++..... .....+..+. -++.+...+
T Consensus 385 ~vE~li~~wV~G~iw~E~k~lw~~G~~~y~~~~Wn~lDf~m~siyl~s~~lr~~a~~~~~~~~~~~~~R~~W~~~dp~ll 464 (822)
T KOG3609|consen 385 ALEILIYLWVMGLIWEEIKELWRVGRDGYLAFWWNWLDFAMISIYLASFILRAVAWGKREAFDPSSVDRMHWPSFDPSLL 464 (822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccchhhCCCCcHHHH
Confidence 3444445555667778888899999999999999999998877666555411100 0000000000 011111111
Q ss_pred e---eeeeeehhhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-c---cc-CCCCCC
Q psy12306 1012 S---INFFRLFRVMRLIKLLSRGEGIRTLLWTFIKSFQALPYVALLIVMLFFIYAVIGMQVFGKIA-L---VF-GGGIHR 1083 (1643)
Q Consensus 1012 ~---i~~lRl~RvlRllrLi~~~~~lr~Ll~tl~~S~~~L~~v~lLl~l~~fIfAiiGmqlFg~~~-~---~~-~~~i~~ 1083 (1643)
+ ..+--+|-.+|++-++.-.+.+--|--++-+.+..+....+++.++++-|++=-.|++-+.. . +. +..-..
T Consensus 465 ~E~lfAiA~V~S~lrl~~i~t~n~~lGPlqISlGrmv~Di~kF~~I~~lvl~aF~iGl~qLy~yy~~~~~~~~~~~~~~~ 544 (822)
T KOG3609|consen 465 AEGLFAIANVLSFLKLFYIFTMNPSLGPLQISLGRMVGDIYKFLFIFVLVLVAFSIGLNQLYDYYLNRKTMKIDQDYTKT 544 (822)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhccchHhhhhcchhhcccccccccc
Confidence 1 11223566677777777666666566666677778888888888999999987778875432 1 11 111112
Q ss_pred CCCCCCHhHHHHhhhccccccccHHHHHhhcCCCCCcccCCCCCCCCCCCCCCCcCcceeeeeeehhhHHHHHHHHHHHH
Q psy12306 1084 NNNFQTFPQAVLVLFRSATGEAWQDIMLDCSNRPSEVKCDAASDGNPTNDDNVSCGSDIAYPYFISFYVLCSFLIINLFV 1163 (1643)
Q Consensus 1084 ~~NF~tf~~A~ltLF~v~Tge~W~~im~~~~~~~~~~~Cd~~~~~~~~~~~~~~Cgs~~a~iyFisf~ii~~fiilNLfV 1163 (1643)
...|.|+..+.-+|| |.-. ...... .+. - . ....-...++++-|.+|.++...+++||.|
T Consensus 545 ~~~fsti~eS~~tLF-------WsiF--glv~~~-~~~--l--~------~~Hkf~e~ig~~lfG~Y~vi~vIVLLNmLI 604 (822)
T KOG3609|consen 545 TDSFSTIGESSKTLF-------WSIF--GLVVLG-SVV--L--P------YKHKFTEFIGEVLFGVYNVILIIVLLNLLI 604 (822)
T ss_pred ccccccHHHHHHHHH-------HHHH--hccccc-cee--c--c------cchhHHHHHHHHHHHhhheeeHHHHHHHHH
Confidence 237999999999999 5432 111100 000 0 0 011112346778888988888888999999
Q ss_pred HHHHHhhhhhhhc
Q psy12306 1164 AVIMDNFDYLTRD 1176 (1643)
Q Consensus 1164 AvIidnF~~~~~~ 1176 (1643)
|.+-+.|++...+
T Consensus 605 AMmnnSyQeIeD~ 617 (822)
T KOG3609|consen 605 AMMSNSYQEIEDD 617 (822)
T ss_pred HHHHhHHHHHhhc
Confidence 9999999987543
No 27
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=96.85 E-value=0.0016 Score=88.49 Aligned_cols=74 Identities=15% Similarity=0.257 Sum_probs=48.3
Q ss_pred chhhhhhHHHHhhhheeeeeeccCChhHHHHHHHHhHHHHHHHHHHHHHHhh-hc-----c---------cccccccccc
Q psy12306 908 YFEYTIFCLIMINTLTLAMKFYRQPLFYADILDKMNMFFTTVFALEFVFKLA-AF-----R---------FKNYFSDAWN 972 (1643)
Q Consensus 908 ~Fe~~I~~lIllN~i~la~e~~~~~~~~~~~l~~in~~ft~iF~iE~iLKi~-a~-----g---------~~~Yf~~~wN 972 (1643)
.++.+++++++.+.++...+-.-.+......+.+++.++.++|.+|+++++. ++ + .++|++ .|-
T Consensus 63 ~Wd~~~~~~~~y~~~~~p~~~~F~~~~~~~~~~~~d~i~~~~F~iDi~l~f~~ay~d~~~~~lV~d~~~I~~~Yl~-~~f 141 (823)
T PLN03192 63 WWETLMVVLVAYSAWVYPFEVAFLNASPKRGLEIADNVVDLFFAVDIVLTFFVAYIDPRTQLLVRDRKKIAVRYLS-TWF 141 (823)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHeeCCCCCCCeeeHHHHHHHHHHHHHHhheeEEEEeCCCcEEEeCHHHHHHHHHH-HhH
Confidence 5677888888888776544321111111123567899999999999999974 32 1 236764 477
Q ss_pred eeehhhHhHH
Q psy12306 973 VFDFVIVMGS 982 (1643)
Q Consensus 973 ifDfivVi~s 982 (1643)
++|++.+++.
T Consensus 142 ~~Dlis~lP~ 151 (823)
T PLN03192 142 LMDVASTIPF 151 (823)
T ss_pred HHHHHHHhHH
Confidence 9999877765
No 28
>KOG3614|consensus
Probab=95.76 E-value=0.081 Score=71.18 Aligned_cols=233 Identities=18% Similarity=0.330 Sum_probs=123.7
Q ss_pred HHHhhhheeeeeeccCChhHHHHHHHHhHHHHHHHHHHHHHHhhhc-------ccccccccccceeehhhHhHHHHHHhc
Q psy12306 916 LIMINTLTLAMKFYRQPLFYADILDKMNMFFTTVFALEFVFKLAAF-------RFKNYFSDAWNVFDFVIVMGSFIDIFS 988 (1643)
Q Consensus 916 lIllN~i~la~e~~~~~~~~~~~l~~in~~ft~iF~iE~iLKi~a~-------g~~~Yf~~~wNifDfivVi~sii~ii~ 988 (1643)
++++=+-++.++..+.|... +++-++.+..+.+|-+=+++-- ..+-||.+.||+.|.+.+..-+++.+.
T Consensus 805 FL~lftYvlLv~~~~~Ps~~----Ew~~~~~iftl~~E~vRq~~~se~~~l~~kv~v~f~d~wN~~d~~ai~~F~vG~~~ 880 (1381)
T KOG3614|consen 805 FLLLFTYVLLVDFQPSPSMW----EWILFAWIFTLFLEEVRQIFISESGLLPQKVRVYFADFWNLIDLLAILLFLVGPVL 880 (1381)
T ss_pred HHHHHHHHheeccCCCCCcc----chhHHHHHHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhhee
Confidence 34444555667776666443 3333445555677888776532 224599999999999999999998884
Q ss_pred CCCccccccccCCCCCcccCcceeeeeeeehhhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12306 989 DSPPHAAAKATIPGSHEQTSGRLSINFFRLFRVMRLIKLLSRGEGIRTLLWTFIKSFQALPYVALLIVMLFFIYAVIGMQ 1068 (1643)
Q Consensus 989 ~~~~~~~~~~~~~g~~~~~~~~~~i~~lRl~RvlRllrLi~~~~~lr~Ll~tl~~S~~~L~~v~lLl~l~~fIfAiiGmq 1068 (1643)
.+.+... .. ...+.+.+--++--+|++..+.-.+.+-=-+..+.+-++.+++++.++++.++.|+|.--.
T Consensus 881 Rl~~~~~---~~-------~GRvIl~~d~i~~t~rLl~~f~V~~~lGPyI~mv~kMm~dmf~flfllaV~LlsfGVarQa 950 (1381)
T KOG3614|consen 881 RLLPIDS---IY-------SGRVILCFDFILFTLRLLHYFTVSKQLGPYIVMVKKMMKDMFFFLFLLAVVLLSFGVARQA 950 (1381)
T ss_pred EecCccc---ee-------cceeeeeehHHHHHHHHhhheeeccccCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 4332000 01 1122223333455566666666555544334444455566666666666666666654222
Q ss_pred hhcccccccCCCCCCCCCCC-CHhHHHHhhhccccccccHHHHHhhcCCCCCcccCCCCCCCCCCCCCCCcCcc--eeee
Q psy12306 1069 VFGKIALVFGGGIHRNNNFQ-TFPQAVLVLFRSATGEAWQDIMLDCSNRPSEVKCDAASDGNPTNDDNVSCGSD--IAYP 1145 (1643)
Q Consensus 1069 lFg~~~~~~~~~i~~~~NF~-tf~~A~ltLF~v~Tge~W~~im~~~~~~~~~~~Cd~~~~~~~~~~~~~~Cgs~--~a~i 1145 (1643)
+- . +++.. ...=|+ .|..-.+++| ||-..+-++.|.... -.|.... ..+...+...|... .+++
T Consensus 951 Il---~-P~e~~--~w~l~R~i~y~PYlmif----GeV~a~eID~~~~e~--~~~~~p~-~~~~s~~~~~c~pg~wl~pl 1017 (1381)
T KOG3614|consen 951 IL---R-PDEPR--HWWLFRNIFYWPYLMLF----GEVPADEIDTCTCEK--SFCGEPL-RYESSPGNPSCPPGSWLTPL 1017 (1381)
T ss_pred hc---C-CCCCc--hHHHHHHHHHHHHHHHh----ccccHhhhhhhcccc--cccCCCc-ccCCCCCCCCCCCcchhHHH
Confidence 11 0 01000 000121 2344445555 665555555554332 1221000 00001112456543 4555
Q ss_pred eeehhhHHHHHHHHHHHHHHHHHhhhhhhh
Q psy12306 1146 YFISFYVLCSFLIINLFVAVIMDNFDYLTR 1175 (1643)
Q Consensus 1146 yFisf~ii~~fiilNLfVAvIidnF~~~~~ 1175 (1643)
-.+.|.++.+.+++||.||+--..|+...+
T Consensus 1018 Ll~~yLLv~nILL~NLLIA~Fn~tf~~v~~ 1047 (1381)
T KOG3614|consen 1018 LLVIYLLVTNILLVNLLIAMFSYTFGNVQE 1047 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666667899999999888876543
No 29
>KOG3733|consensus
Probab=94.99 E-value=0.06 Score=63.90 Aligned_cols=143 Identities=20% Similarity=0.335 Sum_probs=102.3
Q ss_pred ehhhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCCCCCCCCCCHhHHHHhh
Q psy12306 1018 LFRVMRLIKLLSRGEGIRTLLWTFIKSFQALPYVALLIVMLFFIYAVIGMQVFGKIALVFGGGIHRNNNFQTFPQAVLVL 1097 (1643)
Q Consensus 1018 l~RvlRllrLi~~~~~lr~Ll~tl~~S~~~L~~v~lLl~l~~fIfAiiGmqlFg~~~~~~~~~i~~~~NF~tf~~A~ltL 1097 (1643)
++-.+-++|-+...+.-..|+.|+.+++|.+.....-..++..-|.--|.-+-|. .+..|++.-.---+|
T Consensus 384 LLVW~GVIRYLgfF~~YNvlIlTl~~alPkVlRFc~ca~mIYlGy~FCGWIVLGP----------YHdKFrsLntvsECL 453 (566)
T KOG3733|consen 384 LLVWFGVIRYLGFFKTYNVLILTLKKALPKVLRFCCCAAMIYLGYCFCGWIVLGP----------YHDKFRSLNTVSECL 453 (566)
T ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHhheeeEEecc----------hHHhhhhHHHHHHHH
Confidence 3445667777788888999999999999998888776666665454444444442 345688888777889
Q ss_pred hccccccccHHHHHhhcCCCCCcccCCCCCCCCCCCCCCCcCcc----eeeeeeehhhHHHHHHHHHHHHHHHHHhhhhh
Q psy12306 1098 FRSATGEAWQDIMLDCSNRPSEVKCDAASDGNPTNDDNVSCGSD----IAYPYFISFYVLCSFLIINLFVAVIMDNFDYL 1173 (1643)
Q Consensus 1098 F~v~Tge~W~~im~~~~~~~~~~~Cd~~~~~~~~~~~~~~Cgs~----~a~iyFisf~ii~~fiilNLfVAvIidnF~~~ 1173 (1643)
|-+..|++--... +.|.+. |. ++-+|..||+-+.-|+++.||||+|.|.++..
T Consensus 454 FSLINGDDMFaTF-A~mqqk----------------------S~lvWlFsqiYLYSFISLfIYmvLSLFIAlItdaYDTI 510 (566)
T KOG3733|consen 454 FSLINGDDMFATF-ATMQQK----------------------STLVWLFSQIYLYSFISLFIYMVLSLFIALITDAYDTI 510 (566)
T ss_pred HHhhCchhHHHHH-HHHhhh----------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHH
Confidence 9999998755433 223221 22 36689999999999999999999999999976
Q ss_pred hhccc-cCCccchHHHHHHhc
Q psy12306 1174 TRDWS-ILGPHHLDEFIRLWS 1193 (1643)
Q Consensus 1174 ~~~~~-~l~~~~l~~f~~~W~ 1193 (1643)
++-.. ..-+-|+++|...++
T Consensus 511 K~~qq~GfpeTdLqafi~ec~ 531 (566)
T KOG3733|consen 511 KAYQQDGFPETDLQAFITECA 531 (566)
T ss_pred HHhhhCCCChhHHHHHHHHhc
Confidence 54322 344568888886554
No 30
>KOG3609|consensus
Probab=92.45 E-value=0.21 Score=64.73 Aligned_cols=138 Identities=21% Similarity=0.290 Sum_probs=88.7
Q ss_pred HHHHHHHHHhhheecccccccccccccceeeeehhhhhHHhhhc-----c-CC------------CCCc-----chhhHH
Q psy12306 326 ALFTMEMTLKMYSLGFQGYFVSLFNRFDCFVVIGSIGEMILTRT-----N-IM------------PPLG-----VSVLRC 382 (1643)
Q Consensus 326 ~iF~iE~iLKi~a~G~~~Yf~~~wNifD~~vvl~sii~lil~~~-----~-~~------------~~~~-----l~vLR~ 382 (1643)
.-++.|=+-.++..|+++|+++.||++|+..+.+.+..+++-.. . .. .|.. .-+--+
T Consensus 395 ~G~iw~E~k~lw~~G~~~y~~~~Wn~lDf~m~siyl~s~~lr~~a~~~~~~~~~~~~~R~~W~~~dp~ll~E~lfAiA~V 474 (822)
T KOG3609|consen 395 MGLIWEEIKELWRVGRDGYLAFWWNWLDFAMISIYLASFILRAVAWGKREAFDPSSVDRMHWPSFDPSLLAEGLFAIANV 474 (822)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccchhhCCCCcHHHHHHHHHHHHHH
Confidence 34777888889999999999999999999887776666554221 0 00 1111 112223
Q ss_pred HHHhHhhhhhhchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccCCC-CC----CCCCCCCChhhh
Q psy12306 383 VRLLRVFKVTKYWRSLSNLVASLLNSIQSIASLLLLLFLFIVIFALLGMQVFGGKFNFNPT-IA----KPRSNFDSFWQS 457 (1643)
Q Consensus 383 ~RlLRi~kl~r~~~~l~~L~~ti~~s~~~l~~l~lll~l~i~iFAilGmqlFgg~~~~~~~-~~----~~~~nFd~f~~A 457 (1643)
|-.+|++-++...+++-=+--++.+.+..+..++++..++++-||+=-.|++....+.... ++ .....|.++..+
T Consensus 475 ~S~lrl~~i~t~n~~lGPlqISlGrmv~Di~kF~~I~~lvl~aF~iGl~qLy~yy~~~~~~~~~~~~~~~~~~fsti~eS 554 (822)
T KOG3609|consen 475 LSFLKLFYIFTMNPSLGPLQISLGRMVGDIYKFLFIFVLVLVAFSIGLNQLYDYYLNRKTMKIDQDYTKTTDSFSTIGES 554 (822)
T ss_pred HHHHHHHHHhhccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhccchHhhhhcchhhccccccccccccccccHHHH
Confidence 3344445555555555555567888899999999999999999987666777644332110 00 111268888777
Q ss_pred hhhhee
Q psy12306 458 LLTVFQ 463 (1643)
Q Consensus 458 ~vTlF~ 463 (1643)
+-|+|=
T Consensus 555 ~~tLFW 560 (822)
T KOG3609|consen 555 SKTLFW 560 (822)
T ss_pred HHHHHH
Confidence 777773
No 31
>KOG0510|consensus
Probab=87.48 E-value=0.51 Score=60.88 Aligned_cols=175 Identities=14% Similarity=0.236 Sum_probs=110.5
Q ss_pred cccccccccceeehhhHhHHHHHHhcCCCccccccccCCCCCcccCcceeeeeeeehhhhHHHHHhhcchhHHHHHHHHH
Q psy12306 963 FKNYFSDAWNVFDFVIVMGSFIDIFSDSPPHAAAKATIPGSHEQTSGRLSINFFRLFRVMRLIKLLSRGEGIRTLLWTFI 1042 (1643)
Q Consensus 963 ~~~Yf~~~wNifDfivVi~sii~ii~~~~~~~~~~~~~~g~~~~~~~~~~i~~lRl~RvlRllrLi~~~~~lr~Ll~tl~ 1042 (1643)
+++||.+.-|+.|.++...+++....... +.+.+... ..-.+--+|-.++++-++++.+.....+-.+.
T Consensus 588 k~~Y~~~i~Nimew~iyts~li~v~~~~~----------~~~~~~Q~-~laa~aV~l~W~nllLmi~~~p~~gIfvvM~~ 656 (929)
T KOG0510|consen 588 KRHYFMDIENIMEWFIYTSALITVYPLFF----------EITAHLQW-VLAAFAVLLGWMNLLLMIGRFPVFGIFVVMLE 656 (929)
T ss_pred HHHHHhhhHHHHHHHHHhhhhheeehhhh----------hhHHHHHH-HHHHHHHHHHHHHHHHHHccCCccceehHHHH
Confidence 45899999999999988877764431111 00000000 00011224567788888888886665555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCCCCCCCCCCHhHHHHhhhccccccccHH-HHHhhcCCCCCcc
Q psy12306 1043 KSFQALPYVALLIVMLFFIYAVIGMQVFGKIALVFGGGIHRNNNFQTFPQAVLVLFRSATGEAWQD-IMLDCSNRPSEVK 1121 (1643)
Q Consensus 1043 ~S~~~L~~v~lLl~l~~fIfAiiGmqlFg~~~~~~~~~i~~~~NF~tf~~A~ltLF~v~Tge~W~~-im~~~~~~~~~~~ 1121 (1643)
...++++....+..+++.-|++--+-+|++. ..|.|.+.|.+..|.++-||.=.. .|.. .+
T Consensus 657 ~I~ktflk~f~vfs~lliaF~lsFYVll~~~-----------~eFs~p~ms~l~t~~MMiGe~dft~~~~~---~~---- 718 (929)
T KOG0510|consen 657 VILKTFLKSFMVFSILLIAFGLSFYVLLNKS-----------SEFSNPFMSKLETFVMMIGENDFTKVMFT---EE---- 718 (929)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhheeeecCC-----------CCcCCCcchhhhhHHHhhccccccccccc---ch----
Confidence 5666666666666666667777666677653 239999999999999999983221 2221 00
Q ss_pred cCCCCCCCCCCCCCCCcCcceeeeeeehhhHHHHHHHHHHHHHHHHHhhhhhhhc
Q psy12306 1122 CDAASDGNPTNDDNVSCGSDIAYPYFISFYVLCSFLIINLFVAVIMDNFDYLTRD 1176 (1643)
Q Consensus 1122 Cd~~~~~~~~~~~~~~Cgs~~a~iyFisf~ii~~fiilNLfVAvIidnF~~~~~~ 1176 (1643)
...++ ---...+++-|++|.++.+.+++||.|++.+.--+...+.
T Consensus 719 ----~~~~~------l~~~v~s~~~f~~F~IfmtIvLMNLLiGLAV~DIq~vqk~ 763 (929)
T KOG0510|consen 719 ----FKRNS------LAHPVLSFAIFVLFTIFMTIVLMNLLIGLAVGDIQGVQKH 763 (929)
T ss_pred ----hhcCc------ccchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence 00000 0011256778888999999999999999999988766543
No 32
>KOG3676|consensus
Probab=86.09 E-value=2 Score=55.89 Aligned_cols=108 Identities=17% Similarity=0.337 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccccccC--C---CC-CCCCCCCCHhHHHHhhhccccccccHHHHHhhcCCCC
Q psy12306 1045 FQALPYVALLIVMLFFIYAVIGMQVFGKIALVFG--G---GI-HRNNNFQTFPQAVLVLFRSATGEAWQDIMLDCSNRPS 1118 (1643)
Q Consensus 1045 ~~~L~~v~lLl~l~~fIfAiiGmqlFg~~~~~~~--~---~i-~~~~NF~tf~~A~ltLF~v~Tge~W~~im~~~~~~~~ 1118 (1643)
+..+..++++..++++-||..-+.+|-+-..+.. + .- ...+-.++|+.++++||+.+-|- .|.
T Consensus 540 ~~DL~RF~~IY~Vfl~GFsqAfy~if~~~~~~~~~~~~~~~~~~m~~~~ds~~~~~l~lf~ftig~------~dl----- 608 (782)
T KOG3676|consen 540 FGDLFRFLLIYLVFLVGFSQAFYSIFQTCDRDSSPNDKNVESNPMCNPYDSFSTFLLTLFEFTIGM------GDL----- 608 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccccCChhhHHHHHHHHHHHHhhhh------hhh-----
Confidence 4667788888888888899988888865332110 0 00 11234566899999999876652 222
Q ss_pred CcccCCCCCCCCCCCCCCCcCcceeeeeeehhhHHHHHHHHHHHHHHHHHhhhhhhhc
Q psy12306 1119 EVKCDAASDGNPTNDDNVSCGSDIAYPYFISFYVLCSFLIINLFVAVIMDNFDYLTRD 1176 (1643)
Q Consensus 1119 ~~~Cd~~~~~~~~~~~~~~Cgs~~a~iyFisf~ii~~fiilNLfVAvIidnF~~~~~~ 1176 (1643)
+.|... +. ..+..+-|+.|.++.+.+++||+||..-++++...++
T Consensus 609 -~~~~~~-~~-----------~~~~kilfv~y~ilv~ILllNMLIAMMg~Ty~~Va~~ 653 (782)
T KOG3676|consen 609 -EACENT-DY-----------PVLFKILFVAYMILVTILLLNMLIAMMGNTYETVAQE 653 (782)
T ss_pred -hhcccc-cc-----------hHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHh
Confidence 122111 00 1245678888888888889999999999999876544
No 33
>KOG1420|consensus
Probab=86.02 E-value=0.6 Score=57.23 Aligned_cols=75 Identities=20% Similarity=0.440 Sum_probs=51.9
Q ss_pred hhhHHHHhhhheeeeeeccCCh--------hHHHHHHHHhHHHHHHHHHHHHHHhhhcccc-cccccccceeehhhHhHH
Q psy12306 912 TIFCLIMINTLTLAMKFYRQPL--------FYADILDKMNMFFTTVFALEFVFKLAAFRFK-NYFSDAWNVFDFVIVMGS 982 (1643)
Q Consensus 912 ~I~~lIllN~i~la~e~~~~~~--------~~~~~l~~in~~ft~iF~iE~iLKi~a~g~~-~Yf~~~wNifDfivVi~s 982 (1643)
++.++.++++..+.+..++.+. ++.+.-..++..|.+.|.+=..+|.+|..-+ -|+-....+.||+.+-.+
T Consensus 129 lvvlvfilsigsliiyf~das~~~ve~cq~w~~~~tqqidlafnifflvyffirfiaasdklwf~lemys~vdfftipps 208 (1103)
T KOG1420|consen 129 LVVLVFILSIGSLIIYFIDASNPIVETCQNWYKDFTQQIDLAFNIFFLVYFFIRFIAASDKLWFWLEMYSVVDFFTIPPS 208 (1103)
T ss_pred eehhHHHHhhhceEEEEEcCCChHHHhhhhhhhChHHHhhhHhhHHHHHHHHHHHhhcccceeeeeehhhheeeeecCch
Confidence 3445556677777776655433 3455666788999999999999999887543 345566677888888777
Q ss_pred HHHH
Q psy12306 983 FIDI 986 (1643)
Q Consensus 983 ii~i 986 (1643)
++++
T Consensus 209 fvsi 212 (1103)
T KOG1420|consen 209 FVSI 212 (1103)
T ss_pred heEE
Confidence 7654
No 34
>KOG0498|consensus
Probab=82.58 E-value=3.8 Score=54.15 Aligned_cols=86 Identities=14% Similarity=0.169 Sum_probs=46.9
Q ss_pred hhhhHHHHHHHHHHHhhhee-----------cc----cccccccccccceeeeehhhhhHHhhhc-----cCCCCCcchh
Q psy12306 320 TNIFFVALFTMEMTLKMYSL-----------GF----QGYFVSLFNRFDCFVVIGSIGEMILTRT-----NIMPPLGVSV 379 (1643)
Q Consensus 320 ~~~~f~~iF~iE~iLKi~a~-----------G~----~~Yf~~~wNifD~~vvl~sii~lil~~~-----~~~~~~~l~v 379 (1643)
++.+-=++|.+.++|+.-.. .+ .+|++ .|=++|+++++|.=.-.++... .........+
T Consensus 122 ~d~ivD~fflvdIvL~Frtayv~~~s~elV~dpk~IA~rYl~-twFiiDlis~lP~~~i~~~~~~~~~~~~~~~~~l~~i 200 (727)
T KOG0498|consen 122 LDTIVDIFFLVDIVLNFRTAYVDPSSYELVDDPKKIAKRYLK-TWFLIDLISTLPFDQIVVLVVIGSTSLALESTILVGI 200 (727)
T ss_pred HHHHHHHHHHHHHHHhheEEEECCCCceeeeCHHHHHHHHHh-hhHHHHHHHhcChhhheeeeeecccchhhhHHHHHHH
Confidence 44444555888988887332 22 27888 8889999998875221111110 0001112345
Q ss_pred hHHHHHhHhhhhhhchHhHHHHHHHHH
Q psy12306 380 LRCVRLLRVFKVTKYWRSLSNLVASLL 406 (1643)
Q Consensus 380 LR~~RlLRi~kl~r~~~~l~~L~~ti~ 406 (1643)
+...|++|+.|+++..+.+..-.....
T Consensus 201 l~~~rL~Rl~Rv~~l~~r~~k~~~~v~ 227 (727)
T KOG0498|consen 201 LLLQRLPRLRRVIPLFARLEKDTGFVY 227 (727)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 555566666666665555555444443
No 35
>PRK10537 voltage-gated potassium channel; Provisional
Probab=81.17 E-value=3 Score=51.89 Aligned_cols=83 Identities=12% Similarity=0.141 Sum_probs=59.8
Q ss_pred chhhHHHHHhHhhhhhhchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccCCCCCCCCCCCCChhh
Q psy12306 377 VSVLRCVRLLRVFKVTKYWRSLSNLVASLLNSIQSIASLLLLLFLFIVIFALLGMQVFGGKFNFNPTIAKPRSNFDSFWQ 456 (1643)
Q Consensus 377 l~vLR~~RlLRi~kl~r~~~~l~~L~~ti~~s~~~l~~l~lll~l~i~iFAilGmqlFgg~~~~~~~~~~~~~nFd~f~~ 456 (1643)
.+.++.+-+++++.+.++|+.+.....++. ..+.++.+....+|+++|...+++.++. ...+-+|.||+
T Consensus 107 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~------~l~~~~~~~~l~~~~~~g~~~~~~~f~~-----~~~s~~dA~y~ 175 (393)
T PRK10537 107 LKFLIGYCIVLLVALLIYRRDFDRSSLAAG------TLFAVISITSLLFYSTFGALYLGDGFSP-----PIESLSTAFYF 175 (393)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhhHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHccccCc-----CCCCHHHHHHh
Confidence 567888889999999999999888643332 1233334445557899998877765431 12456799999
Q ss_pred hhhhheecccCCCC
Q psy12306 457 SLLTVFQQEQKGQE 470 (1643)
Q Consensus 457 A~vTlF~iltge~w 470 (1643)
+++|+.++.+||-.
T Consensus 176 svvt~tTvGyGdi~ 189 (393)
T PRK10537 176 SIVTMSTVGYGDIV 189 (393)
T ss_pred hheeeecccCCCCC
Confidence 99999999999953
No 36
>PF06512 Na_trans_assoc: Sodium ion transport-associated; InterPro: IPR010526 Members of this entry contain a region found exclusively in eukaryotic sodium channels or their subunits, many of which are voltage-gated. Members very often also contain between one and four copies of IPR005821 from INTERPRO and, less often, one copy of IPR000048 from INTERPRO.; GO: 0005248 voltage-gated sodium channel activity, 0006814 sodium ion transport, 0001518 voltage-gated sodium channel complex
Probab=79.56 E-value=0.45 Score=55.15 Aligned_cols=25 Identities=28% Similarity=0.392 Sum_probs=21.8
Q ss_pred CCCChhhHHHhhcccccchhHHHHH
Q psy12306 560 SATNPFRVWCHWICNHDHFGNAILF 584 (1643)
Q Consensus 560 ~~~n~~R~~c~~iv~~~~F~~~Il~ 584 (1643)
..+..+|+.|++||+|+|||.||++
T Consensus 213 ~~W~~~R~~c~~iVeh~~FEtfIif 237 (239)
T PF06512_consen 213 KIWWNLRKTCYRIVEHKWFETFIIF 237 (239)
T ss_pred hhHHHHHhhheeeecccchhheeee
Confidence 3456799999999999999999874
No 37
>KOG0510|consensus
Probab=78.81 E-value=0.39 Score=61.88 Aligned_cols=74 Identities=12% Similarity=0.337 Sum_probs=47.8
Q ss_pred ccccHHHHHHHhhhhcccCCc-hhhhhhhcccccCCCCcccccccceeeEeEEEeehhhHHHHHHHHHHHHHhhhchhhh
Q psy12306 785 HFDDVAKAMLTLFTVSTFEGW-PGLLYNSIDSNLENHGPIHNYRPIVATYYIIYIIIIAFFMVNIFVGFVIVTFQNEGEQ 863 (1643)
Q Consensus 785 nFDn~~~a~ltLF~v~T~egW-~dimy~~~ds~~~~~~P~~~~~~~~~iyFi~fiiig~ff~lNLfvgvii~~F~~~~e~ 863 (1643)
.|-|.+.|.++.|..+-+|.= +..|+ +......+|.+ .....+-|++|.++...++|||.+|..++--+..+++
T Consensus 689 eFs~p~ms~l~t~~MMiGe~dft~~~~---~~~~~~~~l~~--~v~s~~~f~~F~IfmtIvLMNLLiGLAV~DIq~vqk~ 763 (929)
T KOG0510|consen 689 EFSNPFMSKLETFVMMIGENDFTKVMF---TEEFKRNSLAH--PVLSFAIFVLFTIFMTIVLMNLLIGLAVGDIQGVQKH 763 (929)
T ss_pred CcCCCcchhhhhHHHhhcccccccccc---cchhhcCcccc--hHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence 388889999999988877731 11222 11111112221 2334456888999999999999999999887654443
No 38
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=77.37 E-value=11 Score=40.77 Aligned_cols=73 Identities=18% Similarity=0.232 Sum_probs=52.3
Q ss_pred cCCccchHHHHHHhcccCCCCCcceehhhHHHHHHhcCCCcccCCCCchHHHHHHHHhcCCcccCCCceEhHHHHHHHHH
Q psy12306 1179 ILGPHHLDEFIRLWSEYDPDAKGRIKHLDVVTLLRKISPPLGFGKLCPHRVACKRLVSMNMPLNSDGTVLFNATLFAVVR 1258 (1643)
Q Consensus 1179 ~l~~~~l~~f~~~W~~~Dp~~~g~i~~~~l~~ll~~l~~Plg~~~~~~~~~~~~~l~~~~~p~~~~~~v~f~~~l~~l~~ 1258 (1643)
.+++++++++++..+.+|++.+|.|...++.+.++.++. .. +...+.+-+...+. ..++|.|...+-++-+
T Consensus 13 ~~t~~qi~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg~----~~--s~~ei~~l~~~~d~---~~~~idf~~Fl~~ms~ 83 (160)
T COG5126 13 QLTEEQIQELKEAFQLFDRDSDGLIDRNELGKILRSLGF----NP--SEAEINKLFEEIDA---GNETVDFPEFLTVMSV 83 (160)
T ss_pred cCCHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHcCC----CC--cHHHHHHHHHhccC---CCCccCHHHHHHHHHH
Confidence 467788999999999999999999999999999996533 22 22222222223322 4578999998877765
Q ss_pred hh
Q psy12306 1259 TS 1260 (1643)
Q Consensus 1259 ~~ 1260 (1643)
.+
T Consensus 84 ~~ 85 (160)
T COG5126 84 KL 85 (160)
T ss_pred Hh
Confidence 54
No 39
>KOG2243|consensus
Probab=75.34 E-value=5.4 Score=53.15 Aligned_cols=147 Identities=14% Similarity=0.208 Sum_probs=0.0
Q ss_pred ehhhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCCCCCCCCCCHhHHHHhh
Q psy12306 1018 LFRVMRLIKLLSRGEGIRTLLWTFIKSFQALPYVALLIVMLFFIYAVIGMQVFGKIALVFGGGIHRNNNFQTFPQAVLVL 1097 (1643)
Q Consensus 1018 l~RvlRllrLi~~~~~lr~Ll~tl~~S~~~L~~v~lLl~l~~fIfAiiGmqlFg~~~~~~~~~i~~~~NF~tf~~A~ltL 1097 (1643)
.|-...++-+.-.++.+|+++.++..--+.|.--..|+.++.|.|.+++...|.+++...+++..+...=++.....+.
T Consensus 4789 fffaahlldiamgfktlrtilssvthngkqlvltvgllavvvylytvvafnffrkfynksed~d~pdmkcddmltcylf- 4867 (5019)
T KOG2243|consen 4789 FFFAAHLLDIAMGFKTLRTILSSVTHNGKQLVLTVGLLAVVVYLYTVVAFNFFRKFYNKSEDDDEPDMKCDDMLTCYLF- 4867 (5019)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHhccCCeEEEEeehhHHHHHHHHHHHHHHHHHHHhcccccCCCCCccchhhHHHHhh-
Q ss_pred hccccccccHHHHHhhcCCCCCcccCCCCCCCCCCCCCCCcCcceeeeeeehhhHHHHHHHHHHHHHHHHHhhhhhhhcc
Q psy12306 1098 FRSATGEAWQDIMLDCSNRPSEVKCDAASDGNPTNDDNVSCGSDIAYPYFISFYVLCSFLIINLFVAVIMDNFDYLTRDW 1177 (1643)
Q Consensus 1098 F~v~Tge~W~~im~~~~~~~~~~~Cd~~~~~~~~~~~~~~Cgs~~a~iyFisf~ii~~fiilNLfVAvIidnF~~~~~~~ 1177 (1643)
-||-..++.|+- ++...++.++--..+-++|=|+|++++..|++-+.-+.|+|.|.++..+.
T Consensus 4868 -----------hmyvgvragggi-------gdeiedpagd~yeiyriifditffffvivillaiiqgliidafgelrdqq 4929 (5019)
T KOG2243|consen 4868 -----------HMYVGVRAGGGI-------GDEIEDPAGDEYEIYRIIFDITFFFFVIVILLAIIQGLIIDAFGELRDQQ 4929 (5019)
T ss_pred -----------heeeeeecCCcc-------cccccCCCCCcceeeeeeehhhHHHHHHHHHHHHHHHHhHHHHHhhHhHH
Q ss_pred ccCCcc
Q psy12306 1178 SILGPH 1183 (1643)
Q Consensus 1178 ~~l~~~ 1183 (1643)
+.+.++
T Consensus 4930 eqvked 4935 (5019)
T KOG2243|consen 4930 EQVKED 4935 (5019)
T ss_pred HHHHhh
No 40
>KOG1420|consensus
Probab=74.20 E-value=4.9 Score=49.73 Aligned_cols=50 Identities=14% Similarity=0.291 Sum_probs=38.3
Q ss_pred chhhhhHHHHHHHHHHHhhheeccccccc-ccccccceeeeehhhhhHHhh
Q psy12306 318 EVTNIFFVALFTMEMTLKMYSLGFQGYFV-SLFNRFDCFVVIGSIGEMILT 367 (1643)
Q Consensus 318 ~~~~~~f~~iF~iE~iLKi~a~G~~~Yf~-~~wNifD~~vvl~sii~lil~ 367 (1643)
..++..|.++|.+=..+|.+|..-+-+|- .-..+.|++.+-++++.+-+.
T Consensus 165 qqidlafnifflvyffirfiaasdklwf~lemys~vdfftippsfvsiyl~ 215 (1103)
T KOG1420|consen 165 QQIDLAFNIFFLVYFFIRFIAASDKLWFWLEMYSVVDFFTIPPSFVSIYLN 215 (1103)
T ss_pred HHhhhHhhHHHHHHHHHHHhhcccceeeeeehhhheeeeecCchheEEEec
Confidence 34677788888888899999998776554 556789999999988775543
No 41
>KOG3614|consensus
Probab=74.18 E-value=3.2 Score=56.77 Aligned_cols=101 Identities=19% Similarity=0.287 Sum_probs=60.2
Q ss_pred HHHHHHHhhheecc-------cccccccccccceeeeehhhhhHHhhhccCC---CCCcc----hhhHHHHHhHhhhhhh
Q psy12306 328 FTMEMTLKMYSLGF-------QGYFVSLFNRFDCFVVIGSIGEMILTRTNIM---PPLGV----SVLRCVRLLRVFKVTK 393 (1643)
Q Consensus 328 F~iE~iLKi~a~G~-------~~Yf~~~wNifD~~vvl~sii~lil~~~~~~---~~~~l----~vLR~~RlLRi~kl~r 393 (1643)
+.+|-+=|++.-.. +-||.+.||+.|.++++..++..++-..+.. .+..+ .++-.+|++-+|-+-+
T Consensus 835 l~~E~vRq~~~se~~~l~~kv~v~f~d~wN~~d~~ai~~F~vG~~~Rl~~~~~~~~GRvIl~~d~i~~t~rLl~~f~V~~ 914 (1381)
T KOG3614|consen 835 LFLEEVRQIFISESGLLPQKVRVYFADFWNLIDLLAILLFLVGPVLRLLPIDSIYSGRVILCFDFILFTLRLLHYFTVSK 914 (1381)
T ss_pred HHHHHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhheeEecCccceecceeeeeehHHHHHHHHhhheeecc
Confidence 55666666544322 3699999999999999888887766544311 11111 1333445444444433
Q ss_pred chHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12306 394 YWRSLSNLVASLLNSIQSIASLLLLLFLFIVIFALLGM 431 (1643)
Q Consensus 394 ~~~~l~~L~~ti~~s~~~l~~l~lll~l~i~iFAilGm 431 (1643)
.+-=-+..+.+-+..+..+++++++.++-|++.--
T Consensus 915 ---~lGPyI~mv~kMm~dmf~flfllaV~LlsfGVarQ 949 (1381)
T KOG3614|consen 915 ---QLGPYIVMVKKMMKDMFFFLFLLAVVLLSFGVARQ 949 (1381)
T ss_pred ---ccCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 33333445555667777777777777777766543
No 42
>KOG3533|consensus
Probab=71.17 E-value=11 Score=50.90 Aligned_cols=51 Identities=20% Similarity=0.505 Sum_probs=39.2
Q ss_pred hHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy12306 1022 MRLIKLLSRGEGIRTLLWTFIKSFQALPYVALLIVMLFFIYAVIGMQVFGK 1072 (1643)
Q Consensus 1022 lRllrLi~~~~~lr~Ll~tl~~S~~~L~~v~lLl~l~~fIfAiiGmqlFg~ 1072 (1643)
+-++-++-+-+.+..++.++.+--+++.--++|-+++.|.|+|+|...|..
T Consensus 2396 iLLFDliyrEETL~NVIkSVTRNgrSIvlTa~LALILvYlFSIiGflffkd 2446 (2706)
T KOG3533|consen 2396 ILLFDLIYREETLQNVIKSVTRNGRSIVLTALLALILVYLFSILGFLFFKD 2446 (2706)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCceeHHHHHHHHHHHHHHHHHHHHhccc
Confidence 345566667777777777777767777777788888889999999999964
No 43
>KOG3533|consensus
Probab=70.60 E-value=3.9 Score=54.90 Aligned_cols=29 Identities=24% Similarity=0.640 Sum_probs=20.9
Q ss_pred EeEEEeehhhHHHHHHHHHHHHHhhhchh
Q psy12306 833 YYIIYIIIIAFFMVNIFVGFVIVTFQNEG 861 (1643)
Q Consensus 833 yFi~fiiig~ff~lNLfvgvii~~F~~~~ 861 (1643)
|=..|.++--.++|||+.|||||+|...+
T Consensus 2545 YDllFffivIiIVLNLIFGVIIDTFaDLR 2573 (2706)
T KOG3533|consen 2545 YDLLFFFIVIIIVLNLIFGVIIDTFADLR 2573 (2706)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 43444444455799999999999997543
No 44
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=66.21 E-value=12 Score=33.78 Aligned_cols=63 Identities=14% Similarity=0.286 Sum_probs=43.0
Q ss_pred HHHHhcccCCCCCcceehhhHHHHHHhcCCCcccCCCCchHHHHHHHHhcCCcccCCCceEhHHHHH
Q psy12306 1188 FIRLWSEYDPDAKGRIKHLDVVTLLRKISPPLGFGKLCPHRVACKRLVSMNMPLNSDGTVLFNATLF 1254 (1643)
Q Consensus 1188 f~~~W~~~Dp~~~g~i~~~~l~~ll~~l~~Plg~~~~~~~~~~~~~l~~~~~p~~~~~~v~f~~~l~ 1254 (1643)
.++.|..||.+++|+|...++...+..+..+..-. ..+.....+... +..+.+|.|.|.+.+-
T Consensus 2 l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~---~~~~~~~~~~~~-~D~d~dG~i~~~Ef~~ 64 (66)
T PF13499_consen 2 LKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDE---ESDEMIDQIFRE-FDTDGDGRISFDEFLN 64 (66)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHH---HHHHHHHHHHHH-HTTTSSSSEEHHHHHH
T ss_pred HHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHH---HHHHHHHHHHHH-hCCCCcCCCcHHHHhc
Confidence 46789999999999999999999999987755411 111122222221 2346889999887653
No 45
>KOG0027|consensus
Probab=63.08 E-value=20 Score=38.35 Aligned_cols=62 Identities=21% Similarity=0.441 Sum_probs=46.8
Q ss_pred chHHHHHHhcccCCCCCcceehhhHHHHHHhcCCCcccCCCCchHHHHHHHHhcCCcccCCCceEhHHHH
Q psy12306 1184 HLDEFIRLWSEYDPDAKGRIKHLDVVTLLRKISPPLGFGKLCPHRVACKRLVSMNMPLNSDGTVLFNATL 1253 (1643)
Q Consensus 1184 ~l~~f~~~W~~~Dp~~~g~i~~~~l~~ll~~l~~Plg~~~~~~~~~~~~~l~~~~~p~~~~~~v~f~~~l 1253 (1643)
..++.+++|..||++++|+|...++..++..+..++. ...|+.+.. ..+.+.||+|.|.+..
T Consensus 83 ~~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~~~~-------~~e~~~mi~-~~d~d~dg~i~f~ef~ 144 (151)
T KOG0027|consen 83 SSEELKEAFRVFDKDGDGFISASELKKVLTSLGEKLT-------DEECKEMIR-EVDVDGDGKVNFEEFV 144 (151)
T ss_pred cHHHHHHHHHHHccCCCCcCcHHHHHHHHHHhCCcCC-------HHHHHHHHH-hcCCCCCCeEeHHHHH
Confidence 4568899999999999999999999999999988765 223344332 2344788999875543
No 46
>PF14658 EF-hand_9: EF-hand domain
Probab=62.04 E-value=28 Score=31.97 Aligned_cols=58 Identities=26% Similarity=0.465 Sum_probs=44.7
Q ss_pred hcccCCCCCcceehhhHHHHHHhcCCCcccCCCCchHHHHHHHHhcCCcccCCCceEhHHHHHH
Q psy12306 1192 WSEYDPDAKGRIKHLDVVTLLRKISPPLGFGKLCPHRVACKRLVSMNMPLNSDGTVLFNATLFA 1255 (1643)
Q Consensus 1192 W~~~Dp~~~g~i~~~~l~~ll~~l~~Plg~~~~~~~~~~~~~l~~~~~p~~~~~~v~f~~~l~~ 1255 (1643)
..-||++.+|+++..++.++|+....+ .|.......|.+.--|-..+|.|.|.+.+..
T Consensus 4 F~~fD~~~tG~V~v~~l~~~Lra~~~~------~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~i 61 (66)
T PF14658_consen 4 FDAFDTQKTGRVPVSDLITYLRAVTGR------SPEESELQDLINELDPEGRDGSVNFDTFLAI 61 (66)
T ss_pred hhhcCCcCCceEeHHHHHHHHHHHcCC------CCcHHHHHHHHHHhCCCCCCceEeHHHHHHH
Confidence 456899999999999999999998653 2444455567777788777888998766543
No 47
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=59.52 E-value=11 Score=28.88 Aligned_cols=28 Identities=25% Similarity=0.460 Sum_probs=23.6
Q ss_pred HHHHHhcccCCCCCcceehhhHHHHHHh
Q psy12306 1187 EFIRLWSEYDPDAKGRIKHLDVVTLLRK 1214 (1643)
Q Consensus 1187 ~f~~~W~~~Dp~~~g~i~~~~l~~ll~~ 1214 (1643)
++++++..||.+++|+|...++..++++
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~ 28 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRK 28 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHH
Confidence 3567889999999999999999998883
No 48
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=59.21 E-value=11 Score=28.64 Aligned_cols=28 Identities=21% Similarity=0.563 Sum_probs=24.0
Q ss_pred HHHHhcccCCCCCcceehhhHHHHHHhc
Q psy12306 1188 FIRLWSEYDPDAKGRIKHLDVVTLLRKI 1215 (1643)
Q Consensus 1188 f~~~W~~~Dp~~~g~i~~~~l~~ll~~l 1215 (1643)
.+++...||.++.|+|...++...++++
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~~L 29 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMMKKL 29 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHHT
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHHhC
Confidence 4567789999999999999999988764
No 49
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=54.60 E-value=32 Score=33.01 Aligned_cols=72 Identities=19% Similarity=0.326 Sum_probs=48.4
Q ss_pred ccchHHHHHHhcccCC--CCCcceehhhHHHHHHh-cCCCcccCCCCchHHHHHHHHhcCCcccCCCceEhHHHHHHHH
Q psy12306 1182 PHHLDEFIRLWSEYDP--DAKGRIKHLDVVTLLRK-ISPPLGFGKLCPHRVACKRLVSMNMPLNSDGTVLFNATLFAVV 1257 (1643)
Q Consensus 1182 ~~~l~~f~~~W~~~Dp--~~~g~i~~~~l~~ll~~-l~~Plg~~~~~~~~~~~~~l~~~~~p~~~~~~v~f~~~l~~l~ 1257 (1643)
+++++++++++..||. +++|.|...++..+++. ++.+++... .....+.+... .-.+.+|+|.|.+.+-.+.
T Consensus 4 ~~~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~---~~~ei~~i~~~-~d~~~~g~I~f~eF~~~~~ 78 (88)
T cd00213 4 EKAIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQK---DPEAVDKIMKD-LDVNKDGKVDFQEFLVLIG 78 (88)
T ss_pred HHHHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCC---CHHHHHHHHHH-hccCCCCcCcHHHHHHHHH
Confidence 4567889999999999 79999999999999876 444444221 12233343321 2335678898887755443
No 50
>KOG0027|consensus
Probab=53.79 E-value=61 Score=34.63 Aligned_cols=71 Identities=21% Similarity=0.392 Sum_probs=50.5
Q ss_pred CccchHHHHHHhcccCCCCCcceehhhHHHHHHhcCCCcccCCCCchHHHHHHHHhcCCcccCCCceEhHHHHHHHHHh
Q psy12306 1181 GPHHLDEFIRLWSEYDPDAKGRIKHLDVVTLLRKISPPLGFGKLCPHRVACKRLVSMNMPLNSDGTVLFNATLFAVVRT 1259 (1643)
Q Consensus 1181 ~~~~l~~f~~~W~~~Dp~~~g~i~~~~l~~ll~~l~~Plg~~~~~~~~~~~~~l~~~~~p~~~~~~v~f~~~l~~l~~~ 1259 (1643)
++.+..+++++|+.||.++.|+|...++...++.+.+. |.......+.. .+..+.+|+|.|.+.+-.+.+.
T Consensus 3 ~~~~~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~-------~t~~el~~~~~-~~D~dg~g~I~~~eF~~l~~~~ 73 (151)
T KOG0027|consen 3 SEEQILELKEAFQLFDKDGDGKISVEELGAVLRSLGQN-------PTEEELRDLIK-EIDLDGDGTIDFEEFLDLMEKL 73 (151)
T ss_pred CHHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCC-------CCHHHHHHHHH-HhCCCCCCeEcHHHHHHHHHhh
Confidence 45667889999999999999999999999999998764 22222222221 2334578899998876655443
No 51
>PF06512 Na_trans_assoc: Sodium ion transport-associated; InterPro: IPR010526 Members of this entry contain a region found exclusively in eukaryotic sodium channels or their subunits, many of which are voltage-gated. Members very often also contain between one and four copies of IPR005821 from INTERPRO and, less often, one copy of IPR000048 from INTERPRO.; GO: 0005248 voltage-gated sodium channel activity, 0006814 sodium ion transport, 0001518 voltage-gated sodium channel complex
Probab=50.50 E-value=5 Score=46.51 Aligned_cols=28 Identities=21% Similarity=0.443 Sum_probs=24.4
Q ss_pred cccchhhhhhhhccccccchhhhHhHHH
Q psy12306 243 DRNNRRMRRACRKAVKSQGFYWLIIILV 270 (1643)
Q Consensus 243 ~~~~~~~r~~~~~iv~s~~F~~~i~~~I 270 (1643)
.+.|..+|+.|+++|+|+||+.||+++|
T Consensus 212 g~~W~~~R~~c~~iVeh~~FEtfIifmI 239 (239)
T PF06512_consen 212 GKIWWNLRKTCYRIVEHKWFETFIIFMI 239 (239)
T ss_pred chhHHHHHhhheeeecccchhheeeeeC
Confidence 3456789999999999999999998875
No 52
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=49.26 E-value=7.5 Score=27.53 Aligned_cols=28 Identities=25% Similarity=0.483 Sum_probs=23.6
Q ss_pred HHhhhcccCCccccCcccccchHhhhhh
Q psy12306 1437 EFIRLWSEYDPDAKGRIKHLDVVTLLRK 1464 (1643)
Q Consensus 1437 ef~~~w~~ydp~a~~~i~~~d~~~ll~~ 1464 (1643)
|+.++...+|++.+|+|...+...+++.
T Consensus 1 ~~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 1 ELKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred CHHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 4567788999999999999998888765
No 53
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=47.65 E-value=65 Score=31.58 Aligned_cols=67 Identities=12% Similarity=0.302 Sum_probs=47.7
Q ss_pred CCccchHHHHHHhcccCCCCCcceehhhHHHHHHhcCCCcccCCCCchHHHHHHHHhcCCcccCCCceEhHHHHHHH
Q psy12306 1180 LGPHHLDEFIRLWSEYDPDAKGRIKHLDVVTLLRKISPPLGFGKLCPHRVACKRLVSMNMPLNSDGTVLFNATLFAV 1256 (1643)
Q Consensus 1180 l~~~~l~~f~~~W~~~Dp~~~g~i~~~~l~~ll~~l~~Plg~~~~~~~~~~~~~l~~~~~p~~~~~~v~f~~~l~~l 1256 (1643)
+++.+++++.+....+|.+++|.|...++..+++.+. ++. ...+.+..+ .-.+.+|+|.|.+.+..+
T Consensus 4 ls~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~----~~~-----~ev~~i~~~-~d~~~~g~I~~~eF~~~~ 70 (96)
T smart00027 4 ISPEDKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSG----LPQ-----TLLAKIWNL-ADIDNDGELDKDEFALAM 70 (96)
T ss_pred CCHHHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcC----CCH-----HHHHHHHHH-hcCCCCCCcCHHHHHHHH
Confidence 4567888999999999999999999999999998843 221 122344332 123567889988876444
No 54
>KOG0041|consensus
Probab=43.11 E-value=12 Score=41.06 Aligned_cols=67 Identities=18% Similarity=0.417 Sum_probs=49.4
Q ss_pred CccchHHHHHHhcccCCCCCcceehhhHHHHHHhcCCCcccCCCCchHHHHHHHHhcCCcccCCCceEhHHHHHH
Q psy12306 1181 GPHHLDEFIRLWSEYDPDAKGRIKHLDVVTLLRKISPPLGFGKLCPHRVACKRLVSMNMPLNSDGTVLFNATLFA 1255 (1643)
Q Consensus 1181 ~~~~l~~f~~~W~~~Dp~~~g~i~~~~l~~ll~~l~~Plg~~~~~~~~~~~~~l~~~~~p~~~~~~v~f~~~l~~ 1255 (1643)
+..+++.++.....||-+..|+|...+|..++.+|..|- + ..+.|.++.- .--+.||++.|...|+.
T Consensus 94 srkqIk~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQ----T---HL~lK~mike-Vded~dgklSfreflLI 160 (244)
T KOG0041|consen 94 SRKQIKDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQ----T---HLGLKNMIKE-VDEDFDGKLSFREFLLI 160 (244)
T ss_pred HHHHHHHHHHHHHHhcccccccccHHHHHHHHHHhCCch----h---hHHHHHHHHH-hhcccccchhHHHHHHH
Confidence 446788999999999999999999999999999987762 1 1233333321 22367899999887654
No 55
>KOG0498|consensus
Probab=42.32 E-value=25 Score=46.81 Aligned_cols=74 Identities=14% Similarity=0.303 Sum_probs=47.7
Q ss_pred chhhhhhHHHHhhhheeeee----eccCCh-----hHHHHHHHHhHHHHHHHHHHHHHHhh-hc----------cc----
Q psy12306 908 YFEYTIFCLIMINTLTLAMK----FYRQPL-----FYADILDKMNMFFTTVFALEFVFKLA-AF----------RF---- 963 (1643)
Q Consensus 908 ~Fe~~I~~lIllN~i~la~e----~~~~~~-----~~~~~l~~in~~ft~iF~iE~iLKi~-a~----------g~---- 963 (1643)
.++++++++.+.+.++--++ ..++.. .....+.+++.+.-+.|.+.++++.. |+ .+
T Consensus 79 ~W~~~~Ll~~iya~~v~P~~f~f~~~~~~~~~~d~~~~~~l~v~d~ivD~fflvdIvL~Frtayv~~~s~elV~dpk~IA 158 (727)
T KOG0498|consen 79 VWNKFFLLLVIYAAFVDPLFFYFLLIDDERKCIDGKLAAPLTVLDTIVDIFFLVDIVLNFRTAYVDPSSYELVDDPKKIA 158 (727)
T ss_pred HHHHHHHHHHHHHHHhccceeeEEecccccccccccccCceeeHHHHHHHHHHHHHHHhheEEEECCCCceeeeCHHHHH
Confidence 45677776666665543222 222211 13456677888888999999999973 33 11
Q ss_pred ccccccccceeehhhHhHH
Q psy12306 964 KNYFSDAWNVFDFVIVMGS 982 (1643)
Q Consensus 964 ~~Yf~~~wNifDfivVi~s 982 (1643)
.+|++ .|-++|++.+++-
T Consensus 159 ~rYl~-twFiiDlis~lP~ 176 (727)
T KOG0498|consen 159 KRYLK-TWFLIDLISTLPF 176 (727)
T ss_pred HHHHh-hhHHHHHHHhcCh
Confidence 37888 7889999888763
No 56
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=41.78 E-value=24 Score=24.82 Aligned_cols=27 Identities=22% Similarity=0.457 Sum_probs=22.3
Q ss_pred HHHHhcccCCCCCcceehhhHHHHHHh
Q psy12306 1188 FIRLWSEYDPDAKGRIKHLDVVTLLRK 1214 (1643)
Q Consensus 1188 f~~~W~~~Dp~~~g~i~~~~l~~ll~~ 1214 (1643)
+.++...+|++++|.+...++..+++.
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 456778899999999999998887764
No 57
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=39.36 E-value=65 Score=31.29 Aligned_cols=71 Identities=17% Similarity=0.289 Sum_probs=48.4
Q ss_pred hHHHHHHhcccC-CCCCc-ceehhhHHHHHHh-cCCCcccCCCCchHHHHHHHHhcCCcccCCCceEhHHHHHHHHHh
Q psy12306 1185 LDEFIRLWSEYD-PDAKG-RIKHLDVVTLLRK-ISPPLGFGKLCPHRVACKRLVSMNMPLNSDGTVLFNATLFAVVRT 1259 (1643)
Q Consensus 1185 l~~f~~~W~~~D-p~~~g-~i~~~~l~~ll~~-l~~Plg~~~~~~~~~~~~~l~~~~~p~~~~~~v~f~~~l~~l~~~ 1259 (1643)
.+..+++...|| .+++| .|...++..+++. +..+++.. |.....+.+... +..+.+|.|.|.+.+-.+.+.
T Consensus 8 ~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~---~s~~~v~~i~~~-~D~d~~G~I~f~eF~~l~~~~ 81 (92)
T cd05025 8 METLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQ---KDADAVDKIMKE-LDENGDGEVDFQEFVVLVAAL 81 (92)
T ss_pred HHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCC---CCHHHHHHHHHH-HCCCCCCcCcHHHHHHHHHHH
Confidence 355677888997 99999 5999999999985 76555553 223344455432 234678899998886655433
No 58
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=37.94 E-value=48 Score=23.10 Aligned_cols=17 Identities=41% Similarity=0.784 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy12306 1312 ATFLIQDYFRRFKKRKE 1328 (1643)
Q Consensus 1312 a~~~I~~~fr~f~~~~~ 1328 (1643)
||..||.++|.|..+++
T Consensus 3 aai~iQ~~~R~~~~Rk~ 19 (21)
T PF00612_consen 3 AAIIIQSYWRGYLARKR 19 (21)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 67899999999998875
No 59
>PTZ00183 centrin; Provisional
Probab=37.67 E-value=81 Score=33.28 Aligned_cols=70 Identities=16% Similarity=0.249 Sum_probs=50.1
Q ss_pred cCCccchHHHHHHhcccCCCCCcceehhhHHHHHHhcCCCcccCCCCchHHHHHHHHhcCCcccCCCceEhHHHHHHH
Q psy12306 1179 ILGPHHLDEFIRLWSEYDPDAKGRIKHLDVVTLLRKISPPLGFGKLCPHRVACKRLVSMNMPLNSDGTVLFNATLFAV 1256 (1643)
Q Consensus 1179 ~l~~~~l~~f~~~W~~~Dp~~~g~i~~~~l~~ll~~l~~Plg~~~~~~~~~~~~~l~~~~~p~~~~~~v~f~~~l~~l 1256 (1643)
.+++.+..++++.+..+|++++|+|...++..+++.+..++ ....++.+... +..+.+|.+.|.+..-++
T Consensus 10 ~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~~~-------~~~~~~~l~~~-~d~~~~g~i~~~eF~~~~ 79 (158)
T PTZ00183 10 GLTEDQKKEIREAFDLFDTDGSGTIDPKELKVAMRSLGFEP-------KKEEIKQMIAD-VDKDGSGKIDFEEFLDIM 79 (158)
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCC-------CHHHHHHHHHH-hCCCCCCcEeHHHHHHHH
Confidence 45677889999999999999999999999999998774322 12233343322 234678899998866544
No 60
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=36.48 E-value=91 Score=30.45 Aligned_cols=69 Identities=12% Similarity=0.185 Sum_probs=46.9
Q ss_pred hHHHHHHhcccCC-CCCcceehhhHHHHHHh-cCCCcccCCCCchHHHHHHHHhcCCcccCCCceEhHHHHHHHHHhh
Q psy12306 1185 LDEFIRLWSEYDP-DAKGRIKHLDVVTLLRK-ISPPLGFGKLCPHRVACKRLVSMNMPLNSDGTVLFNATLFAVVRTS 1260 (1643)
Q Consensus 1185 l~~f~~~W~~~Dp-~~~g~i~~~~l~~ll~~-l~~Plg~~~~~~~~~~~~~l~~~~~p~~~~~~v~f~~~l~~l~~~~ 1260 (1643)
+....++...||. +++|+|...++..++.+ ++..+. . + ..+..++. .+-.+.||.|.|.+..-.+.+-+
T Consensus 7 i~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls--~--~--~~v~~mi~-~~D~d~DG~I~F~EF~~l~~~l~ 77 (89)
T cd05022 7 IETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLK--D--V--EGLEEKMK-NLDVNQDSKLSFEEFWELIGELA 77 (89)
T ss_pred HHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhcc--C--H--HHHHHHHH-HhCCCCCCCCcHHHHHHHHHHHH
Confidence 4456677788999 99999999999999988 754431 1 0 23344432 12357899999998765554443
No 61
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=34.39 E-value=16 Score=27.94 Aligned_cols=28 Identities=25% Similarity=0.460 Sum_probs=24.0
Q ss_pred HHhhhcccCCccccCcccccchHhhhhh
Q psy12306 1437 EFIRLWSEYDPDAKGRIKHLDVVTLLRK 1464 (1643)
Q Consensus 1437 ef~~~w~~ydp~a~~~i~~~d~~~ll~~ 1464 (1643)
|+.+++..||.+..|+|...|+..+|++
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~ 28 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRK 28 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHH
Confidence 4677888999999999999999999984
No 62
>KOG0501|consensus
Probab=30.08 E-value=40 Score=42.56 Aligned_cols=90 Identities=13% Similarity=0.315 Sum_probs=48.7
Q ss_pred cCcccccceeeeeeeccchhhhhhHHHHhhhheeeee-eccCChhHHHHHHHHhHHHHHHHHHHHHHHhhh-c-cc----
Q psy12306 891 IPKQRLQYKIWWFVTSQYFEYTIFCLIMINTLTLAMK-FYRQPLFYADILDKMNMFFTTVFALEFVFKLAA-F-RF---- 963 (1643)
Q Consensus 891 ~P~~~~r~~~~~iv~s~~Fe~~I~~lIllN~i~la~e-~~~~~~~~~~~l~~in~~ft~iF~iE~iLKi~a-~-g~---- 963 (1643)
.||.+..--+++-.-...++|.|+++-+--.+..-.. .+.....-+..+-.++.+.-+||.++++|..-. + |+
T Consensus 202 aPKTpPHIiLHYcaFKt~WDWvIL~LTFYTAimVPyNvaFKnk~~~~vs~lvvDSiVDVIF~vDIvLNFHTTFVGPgGEV 281 (971)
T KOG0501|consen 202 APKTPPHIILHYCAFKTIWDWVILILTFYTAIMVPYNVAFKNKQRNNVSWLVVDSIVDVIFFVDIVLNFHTTFVGPGGEV 281 (971)
T ss_pred CCCCCCeEEEeeehhhhHHHHHHHHHHHHHHheeeeeeeecccccCceeEEEecchhhhhhhhhhhhhcceeeecCCCce
Confidence 3554444445555556677888877665544432211 011111112233456777778899999987632 1 22
Q ss_pred --------ccccccccceeehhhHhH
Q psy12306 964 --------KNYFSDAWNVFDFVIVMG 981 (1643)
Q Consensus 964 --------~~Yf~~~wNifDfivVi~ 981 (1643)
..|+++ |-++|++..+.
T Consensus 282 vsdPkvIRmNYlKs-WFvIDLLSCLP 306 (971)
T KOG0501|consen 282 VSDPKVIRMNYLKS-WFVIDLLSCLP 306 (971)
T ss_pred ecChhHHhHHHHHH-HHHHHHHhccc
Confidence 256665 65677665544
No 63
>PF10864 DUF2663: Protein of unknown function (DUF2663); InterPro: IPR020210 This entry represents a group of uncharacterised transmembrane proteins.
Probab=29.13 E-value=1.8e+02 Score=30.52 Aligned_cols=59 Identities=22% Similarity=0.399 Sum_probs=29.2
Q ss_pred HHHHHhhcccC--hHHHHHHHHHhcCCceeeehhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhHHHHHHH
Q psy12306 103 LTVFQCITLEG--WTDVLYNIEDALGRTWQWTYFVSMVILGAFFVMNLILGVLSGEFSKEREKAKARGDFHKLREK 176 (1643)
Q Consensus 103 ltlFqliT~eg--W~dVmy~~~da~g~~~~~iyFV~~I~iGsFfllNL~LAVI~~~F~~er~k~~~r~~f~~l~~~ 176 (1643)
+.+|...+..+ |+.++..... ++ ..-|+++.++++|..++.+ ++ ++.+++.+|+.+|.+
T Consensus 34 ~~~y~~~~~~~~s~~~~~s~~~~---~~--~~l~~ll~~~~~~~~~~~~--------~k--K~eKAEkefhaLRcE 94 (130)
T PF10864_consen 34 FFIYFYIKVIGYSFSSFLSAILG---SP--VHLFWLLALAFSYWAMYYL--------KK--KEEKAEKEFHALRCE 94 (130)
T ss_pred HHHHHHHHHhhcCHHHHHHHHHc---Ch--HHHHHHHHHHHHHHHHHHH--------Hh--hHHHHHHHHHHHHHH
Confidence 33444444444 5555433222 21 3344455555555544432 33 344456789998874
No 64
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=27.10 E-value=2e+02 Score=24.07 Aligned_cols=57 Identities=18% Similarity=0.332 Sum_probs=37.3
Q ss_pred HHHhcccCCCCCcceehhhHHHHHHhcCCCcccCCCCchHHHHHHHHhcCCcccCCCceEhHHHH
Q psy12306 1189 IRLWSEYDPDAKGRIKHLDVVTLLRKISPPLGFGKLCPHRVACKRLVSMNMPLNSDGTVLFNATL 1253 (1643)
Q Consensus 1189 ~~~W~~~Dp~~~g~i~~~~l~~ll~~l~~Plg~~~~~~~~~~~~~l~~~~~p~~~~~~v~f~~~l 1253 (1643)
.+++..+|++++|.+...++..+++.+.+|. +... .+.+... ...+.+|+|.+.+..
T Consensus 3 ~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~------~~~~-~~~~~~~-~~~~~~~~l~~~ef~ 59 (63)
T cd00051 3 REAFRLFDKDGDGTISADELKAALKSLGEGL------SEEE-IDEMIRE-VDKDGDGKIDFEEFL 59 (63)
T ss_pred HHHHHHhCCCCCCcCcHHHHHHHHHHhCCCC------CHHH-HHHHHHH-hCCCCCCeEeHHHHH
Confidence 4567789999999999999999998875433 2222 1222221 223567888887653
No 65
>PTZ00184 calmodulin; Provisional
Probab=27.04 E-value=1.4e+02 Score=30.92 Aligned_cols=69 Identities=20% Similarity=0.367 Sum_probs=47.7
Q ss_pred CCccchHHHHHHhcccCCCCCcceehhhHHHHHHhcCCCcccCCCCchHHHHHHHHhcCCcccCCCceEhHHHHHHH
Q psy12306 1180 LGPHHLDEFIRLWSEYDPDAKGRIKHLDVVTLLRKISPPLGFGKLCPHRVACKRLVSMNMPLNSDGTVLFNATLFAV 1256 (1643)
Q Consensus 1180 l~~~~l~~f~~~W~~~Dp~~~g~i~~~~l~~ll~~l~~Plg~~~~~~~~~~~~~l~~~~~p~~~~~~v~f~~~l~~l 1256 (1643)
+++.+.+++++....+|++++|.|...++..++..+..+.. ...++++... +..+.+|.|.|.+..-.+
T Consensus 5 ~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~-------~~~~~~~~~~-~d~~~~g~i~~~ef~~~l 73 (149)
T PTZ00184 5 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPT-------EAELQDMINE-VDADGNGTIDFPEFLTLM 73 (149)
T ss_pred cCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCC-------HHHHHHHHHh-cCcCCCCcCcHHHHHHHH
Confidence 45567788889999999999999999999999887754321 2233444332 223567888887765443
No 66
>PF07466 DUF1517: Protein of unknown function (DUF1517); InterPro: IPR010903 This family consists of several hypothetical glycine rich plant and bacterial proteins of around 300 residues in length. The function of this family is unknown.
Probab=26.91 E-value=21 Score=42.60 Aligned_cols=86 Identities=31% Similarity=0.366 Sum_probs=64.1
Q ss_pred hhhhhhhccccccCcccccccCCCccccccCCCCCcchhHHHhccCCccchhHhhhhHHHHHHHHcCCHHHHHHHHHHHH
Q psy12306 1522 VTLQAGLRTLHDAGPELKRAISGNLEELVDDNPEPSHRVLAEYGLGKFAYPELVKYTSKEMQEALNMTQEEMDRAAHKLI 1601 (1643)
Q Consensus 1522 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1601 (1643)
.++|-||. ...++++|.+.-=++.-+-+.+|.-+++|.|.-|-.-..|++.-++.-|-+ ....|+.+..=++|-
T Consensus 107 ~klQv~Ll---~~a~~lQ~~L~~iA~~adt~s~~Gl~~~L~E~~l~LLR~~~~wv~~~~~~~---~~~~~~ae~~Fn~ls 180 (289)
T PF07466_consen 107 VKLQVGLL---ASARSLQRDLNRIAETADTSSPEGLARVLQETTLALLRHPEYWVYGSSESQ---QRSLESAEAQFNQLS 180 (289)
T ss_pred EEeeehhc---ccChHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHhCcCceEEEeeccc---cCCHHHHHHHHHHHH
Confidence 48998883 235666653222222333445778899999999998888999888888877 677899999999999
Q ss_pred HHHhhcCcCCce
Q psy12306 1602 IQERHNQFQDTL 1613 (1643)
Q Consensus 1602 ~~~~~~~~~~~~ 1613 (1643)
.+||++=...|+
T Consensus 181 ~~ERsKf~~Etl 192 (289)
T PF07466_consen 181 LEERSKFDEETL 192 (289)
T ss_pred HHHHhhceeeee
Confidence 999998775554
No 67
>PF00325 Crp: Bacterial regulatory proteins, crp family; InterPro: IPR001808 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. This family groups together a range of proteins, including anr, crp, clp, cysR, fixK, flp, fnr, fnrN, hlyX and ntcA [, ]. Within this family, the HTH motif is situated towards the C terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2OZ6_A 1CGP_B 2GZW_C 1O3T_B 3ROU_A 2CGP_A 3RDI_A 1I5Z_A 3IYD_H 3FWE_B ....
Probab=26.83 E-value=86 Score=24.70 Aligned_cols=25 Identities=28% Similarity=0.450 Sum_probs=18.6
Q ss_pred hhHHHHHHHHcCCHHHHHHHHHHHH
Q psy12306 1577 YTSKEMQEALNMTQEEMDRAAHKLI 1601 (1643)
Q Consensus 1577 ~~~~~~~~~~~~~~~~~~~~~~~~~ 1601 (1643)
.+.+|||+.+++|+|-.-++-.+|=
T Consensus 3 mtr~diA~~lG~t~ETVSR~l~~l~ 27 (32)
T PF00325_consen 3 MTRQDIADYLGLTRETVSRILKKLE 27 (32)
T ss_dssp --HHHHHHHHTS-HHHHHHHHHHHH
T ss_pred cCHHHHHHHhCCcHHHHHHHHHHHH
Confidence 4678999999999998887776653
No 68
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=23.31 E-value=2.3e+02 Score=27.71 Aligned_cols=69 Identities=22% Similarity=0.388 Sum_probs=45.4
Q ss_pred hHHHHHHhcccC-CCCCc-ceehhhHHHHHHhc-CCCcccCCCCchHHHHHHH-HhcCCcccCCCceEhHHHHHHHHH
Q psy12306 1185 LDEFIRLWSEYD-PDAKG-RIKHLDVVTLLRKI-SPPLGFGKLCPHRVACKRL-VSMNMPLNSDGTVLFNATLFAVVR 1258 (1643)
Q Consensus 1185 l~~f~~~W~~~D-p~~~g-~i~~~~l~~ll~~l-~~Plg~~~~~~~~~~~~~l-~~~~~p~~~~~~v~f~~~l~~l~~ 1258 (1643)
+...+++..+|| .+++| +|...++..++.+. ...++... .+ ...+.+ ..+ -.+.||.|.|.+.+-.+.+
T Consensus 9 ~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~-~~--~~v~~i~~el--D~n~dG~Idf~EF~~l~~~ 81 (93)
T cd05026 9 MDTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQK-DP--MLVDKIMNDL--DSNKDNEVDFNEFVVLVAA 81 (93)
T ss_pred HHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhccccc-CH--HHHHHHHHHh--CCCCCCCCCHHHHHHHHHH
Confidence 566778889999 78998 59999999999774 33333222 11 223333 233 3578899999987665543
No 69
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=23.24 E-value=1.6e+02 Score=28.73 Aligned_cols=73 Identities=23% Similarity=0.360 Sum_probs=47.0
Q ss_pred hHHHHHHhcccCC-CC-CcceehhhHHHHHHh-cCCCcccCCCCchHHHHHHHHhcCCcccCCCceEhHHHHHHHHHhhh
Q psy12306 1185 LDEFIRLWSEYDP-DA-KGRIKHLDVVTLLRK-ISPPLGFGKLCPHRVACKRLVSMNMPLNSDGTVLFNATLFAVVRTSL 1261 (1643)
Q Consensus 1185 l~~f~~~W~~~Dp-~~-~g~i~~~~l~~ll~~-l~~Plg~~~~~~~~~~~~~l~~~~~p~~~~~~v~f~~~l~~l~~~~l 1261 (1643)
++.+.++...||. ++ +|+|...++..+++. +.+.+|.... ...+..+.. .+..+.+|.|.|.+.+-.+.+-++
T Consensus 7 ~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s---~~ei~~~~~-~~D~~~dg~I~f~eF~~l~~~~~~ 82 (94)
T cd05031 7 MESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKD---PMAVDKIMK-DLDQNRDGKVNFEEFVSLVAGLSI 82 (94)
T ss_pred HHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhcccc---HHHHHHHHH-HhCCCCCCcCcHHHHHHHHHHHHH
Confidence 4556677788986 87 799999999999886 4333554322 223334432 123467889999988755544443
No 70
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=22.82 E-value=38 Score=34.46 Aligned_cols=27 Identities=37% Similarity=0.736 Sum_probs=20.2
Q ss_pred hHHhhhcccCCccccCcccccchHhhh
Q psy12306 1436 DEFIRLWSEYDPDAKGRIKHLDVVTLL 1462 (1643)
Q Consensus 1436 def~~~w~~ydp~a~~~i~~~d~~~ll 1462 (1643)
+.|-|+|+|.==.++||+||.|...-.
T Consensus 7 eQFdrLW~e~Pvn~~GrLkY~eFL~kf 33 (118)
T PF08976_consen 7 EQFDRLWNEMPVNAKGRLKYQEFLSKF 33 (118)
T ss_dssp HHHHHHHTTS-B-TTS-EEHHHHHHHT
T ss_pred HHhhhhhhhCcCCccCCEeHHHHHHHc
Confidence 459999999999999999999866433
No 71
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=21.88 E-value=96 Score=26.60 Aligned_cols=29 Identities=28% Similarity=0.643 Sum_probs=24.5
Q ss_pred HHHHHHhcccCCCCCcceehhhHHHHHHh
Q psy12306 1186 DEFIRLWSEYDPDAKGRIKHLDVVTLLRK 1214 (1643)
Q Consensus 1186 ~~f~~~W~~~Dp~~~g~i~~~~l~~ll~~ 1214 (1643)
++...+...+|++++|.|.+.++..++.+
T Consensus 25 ~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 25 EEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp HHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred HHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 44667889999999999999999887754
No 72
>KOG3676|consensus
Probab=21.04 E-value=2.7e+02 Score=37.41 Aligned_cols=62 Identities=19% Similarity=0.433 Sum_probs=45.3
Q ss_pred cccCcHHHHHHHHHHhhcccChHHHHHHHHHhcCCcee---eehhhhHHHHHHHHHHHHHHHHHHhhhHHH
Q psy12306 93 TNFDNFGLAMLTVFQCITLEGWTDVLYNIEDALGRTWQ---WTYFVSMVILGAFFVMNLILGVLSGEFSKE 160 (1643)
Q Consensus 93 t~FDnf~~A~ltlFqliT~egW~dVmy~~~da~g~~~~---~iyFV~~I~iGsFfllNL~LAVI~~~F~~e 160 (1643)
...|.|..+++|+|+. +.-|+....-....++ -+-||+|+++-+-.++|+++|-.-++|.+-
T Consensus 586 ~~~ds~~~~~l~lf~f------tig~~dl~~~~~~~~~~~~kilfv~y~ilv~ILllNMLIAMMg~Ty~~V 650 (782)
T KOG3676|consen 586 NPYDSFSTFLLTLFEF------TIGMGDLEACENTDYPVLFKILFVAYMILVTILLLNMLIAMMGNTYETV 650 (782)
T ss_pred ChhhHHHHHHHHHHHH------hhhhhhhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 3466689999999997 3334444443333233 356888999999999999999999999653
No 73
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=21.02 E-value=40 Score=25.66 Aligned_cols=29 Identities=24% Similarity=0.584 Sum_probs=24.2
Q ss_pred HHhhhcccCCccccCcccccchHhhhhhc
Q psy12306 1437 EFIRLWSEYDPDAKGRIKHLDVVTLLRKI 1465 (1643)
Q Consensus 1437 ef~~~w~~ydp~a~~~i~~~d~~~ll~~~ 1465 (1643)
|..++-.+||.+..|+|...+...++++|
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~~L 29 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMKKL 29 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHT
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHHhC
Confidence 34566678999999999999999998864
No 74
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=20.95 E-value=2.7e+02 Score=24.58 Aligned_cols=58 Identities=19% Similarity=0.306 Sum_probs=38.2
Q ss_pred HHhcccCCCCCcceehhhHHHHHHhcCCCcccCCCCchHHHHHHHHhcCCcccCCCceEhHHHHHHHH
Q psy12306 1190 RLWSEYDPDAKGRIKHLDVVTLLRKISPPLGFGKLCPHRVACKRLVSMNMPLNSDGTVLFNATLFAVV 1257 (1643)
Q Consensus 1190 ~~W~~~Dp~~~g~i~~~~l~~ll~~l~~Plg~~~~~~~~~~~~~l~~~~~p~~~~~~v~f~~~l~~l~ 1257 (1643)
+....+|++++|.|...++..+++.+ |.+ .. ..+.+... ...+.+|.|.|.+.+..+.
T Consensus 3 ~~F~~~D~~~~G~i~~~el~~~l~~~----g~~----~~-~~~~i~~~-~d~~~~g~i~~~ef~~~~~ 60 (67)
T cd00052 3 QIFRSLDPDGDGLISGDEARPFLGKS----GLP----RS-VLAQIWDL-ADTDKDGKLDKEEFAIAMH 60 (67)
T ss_pred HHHHHhCCCCCCcCcHHHHHHHHHHc----CCC----HH-HHHHHHHH-hcCCCCCcCCHHHHHHHHH
Confidence 44567899999999999999988875 332 11 22333321 2345788899888755543
No 75
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=20.42 E-value=55 Score=27.74 Aligned_cols=30 Identities=17% Similarity=0.314 Sum_probs=25.6
Q ss_pred hhhcccCCccccCcccccchHhhhhhcCCC
Q psy12306 1439 IRLWSEYDPDAKGRIKHLDVVTLLRKISPP 1468 (1643)
Q Consensus 1439 ~~~w~~ydp~a~~~i~~~d~~~ll~~~~~p 1468 (1643)
.++...||++.+|.|...|+..+++.+.+|
T Consensus 3 ~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~ 32 (63)
T cd00051 3 REAFRLFDKDGDGTISADELKAALKSLGEG 32 (63)
T ss_pred HHHHHHhCCCCCCcCcHHHHHHHHHHhCCC
Confidence 466778999999999999999999987543
No 76
>KOG0501|consensus
Probab=20.18 E-value=92 Score=39.56 Aligned_cols=73 Identities=21% Similarity=0.203 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHhhhe--ecc------------cccccccccccceeeeehhhhhHHhhhccCCCCCcchhhHHHHHhHhh
Q psy12306 324 FVALFTMEMTLKMYS--LGF------------QGYFVSLFNRFDCFVVIGSIGEMILTRTNIMPPLGVSVLRCVRLLRVF 389 (1643)
Q Consensus 324 f~~iF~iE~iLKi~a--~G~------------~~Yf~~~wNifD~~vvl~sii~lil~~~~~~~~~~l~vLR~~RlLRi~ 389 (1643)
.-+||.++++|-.-. .|+ ..|+++ |-++|++..++.=+--.+......-+...+.|+++|+||+=
T Consensus 258 VDVIF~vDIvLNFHTTFVGPgGEVvsdPkvIRmNYlKs-WFvIDLLSCLPYDi~naF~~~degI~SLFSaLKVVRLLRLG 336 (971)
T KOG0501|consen 258 VDVIFFVDIVLNFHTTFVGPGGEVVSDPKVIRMNYLKS-WFVIDLLSCLPYDIFNAFERDDEGIGSLFSALKVVRLLRLG 336 (971)
T ss_pred hhhhhhhhhhhhcceeeecCCCceecChhHHhHHHHHH-HHHHHHHhcccHHHHHHhhcccccHHHHHHHHHHHHHHHHH
Confidence 344588888877533 233 157775 66889888888754433333322222346777888888887
Q ss_pred hhhhchHh
Q psy12306 390 KVTKYWRS 397 (1643)
Q Consensus 390 kl~r~~~~ 397 (1643)
|++|....
T Consensus 337 RVaRKLD~ 344 (971)
T KOG0501|consen 337 RVARKLDH 344 (971)
T ss_pred HHHHHHHH
Confidence 77775543
Done!