RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12306
(1643 letters)
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated
sodium-selective ION C membrane, metal transport; HET:
PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 3rw0_A*
Length = 285
Score = 276 bits (709), Expect = 2e-84
Identities = 62/320 (19%), Positives = 123/320 (38%), Gaps = 60/320 (18%)
Query: 890 YIPK-QRLQYKIWWFVTSQYFEYTIFCLIMINTLTLAMKFYRQ-PLFYADILDKMNMFFT 947
+P+ + +I V S +F I LI++N +T+ ++ + + N
Sbjct: 12 LVPRGSHMYLRITNIVESSFFTKFIIYLIVLNGITMGLETSKTFMQSFGVYTTLFNQIVI 71
Query: 948 TVFALEFVFKLAAFRFKNYFSDAWNVFDFVIVMGSFIDIFSDSPPHAAAKATIPGSHEQT 1007
T+F +E + ++ R +F D W++FDF +V S + S
Sbjct: 72 TIFTIEIILRIYVHRIS-FFKDPWSLFDFFVVAISLVPTSS------------------- 111
Query: 1008 SGRLSINFFRLFRVMRLIKLLSRGEGIRTLLWTFIKSFQALPYVALLIVMLFFIYAVIGM 1067
R+ RV+RL +L++ +R ++ I + V L+ + F+I+A++
Sbjct: 112 ----GFEILRVLRVLRLFRLVTAVPQMRKIVSALISVIPGMLSVIALMTLFFYIFAIMAT 167
Query: 1068 QVFGKIALVFGGGIHRNNNFQTFPQAVLVLFRSATGEAWQDIMLDCSNRPSEVKCDAASD 1127
Q+FG+ F T ++ LF+ T E+W ++
Sbjct: 168 QLFGERF---------PEWFGTLGESFYTLFQVMTLESWSMGIVRP-------------- 204
Query: 1128 GNPTNDDNVSCGSDIAYPYFISFYVLCSFLIINLFVAVIMDNFDYLTRDWSILGPHHLDE 1187
+ A+ +FI F + +F++INL VA+ +D L + H +DE
Sbjct: 205 --------LMEVYPYAWVFFIPFIFVVTFVMINLVVAICVDAMAILNQKEE---QHIIDE 253
Query: 1188 FIRLWSEYDPDAKGRIKHLD 1207
+ + + +
Sbjct: 254 VQSHEDNINNEIIKLREEIV 273
Score = 165 bits (419), Expect = 2e-45
Identities = 49/225 (21%), Positives = 90/225 (40%), Gaps = 45/225 (20%)
Query: 240 KDFDRNNRRMRRACRKAVKSQGFYWLIIILVFLNTGVLATEHYQQ-PKWLDSFQEVTNIF 298
M V+S F II L+ LN + E + + + + N
Sbjct: 10 GSLVPRGSHMYLRITNIVESSFFTKFIIYLIVLNGITMGLETSKTFMQSFGVYTTLFNQI 69
Query: 299 FVALFTMEMTLKMYSLGFQEVTNIFFVALFTMEMTLKMYSLGFQGYFVSLFNRFDCFVVI 358
+ +FT+E+ L++Y +F ++ FD FVV
Sbjct: 70 VITIFTIEIILRIYVHRI--------------------------SFFKDPWSLFDFFVVA 103
Query: 359 GSIGEMILTRTNIMPPLGVSVLRCVRLLRVFKVTKYWRSLSNLVASLLNSIQSIASLLLL 418
S+ + G +LR +R+LR+F++ + +V++L++ I + S++ L
Sbjct: 104 ISL---------VPTSSGFEILRVLRVLRLFRLVTAVPQMRKIVSALISVIPGMLSVIAL 154
Query: 419 LFLFIVIFALLGMQVFGGKFNFNPTIAKPRSNFDSFWQSLLTVFQ 463
+ LF IFA++ Q+FG +F F + +S T+FQ
Sbjct: 155 MTLFFYIFAIMATQLFGERFP---------EWFGTLGESFYTLFQ 190
Score = 153 bits (388), Expect = 2e-41
Identities = 56/346 (16%), Positives = 106/346 (30%), Gaps = 120/346 (34%)
Query: 554 SSFFIFSATNPFRVWCHWICNHDHFGNAILF------------------------LGYFD 589
+ + + I F I++ F+
Sbjct: 8 DKGSLVPRGSHMYLRITNIVESSFFTKFIIYLIVLNGITMGLETSKTFMQSFGVYTTLFN 67
Query: 590 NFFTAVFTIEILLKIISYGFILHDGAFCRSSFNLLDLLVVIVSVVAIYWNSAAIAFVKIL 649
+FTIEI+L+I + +F + ++L D VV +S+V +IL
Sbjct: 68 QIVITIFTIEIILRIYVHRI-----SFFKDPWSLFDFFVVAISLVPTSSG------FEIL 116
Query: 650 RVLRVLRPLRAINRAKGLKHVVQCVIVAVKTIGNIVLVTCLLQFMFAVIGVQLFKYVVKC 709
RVLRVLR R + ++ +V +I
Sbjct: 117 RVLRVLRLFRLVTAVPQMRKIVSALISV-------------------------------- 144
Query: 710 VIVAIKTIGNIMLVTYLLSFMFAVMGVQLFKGKFFQCNDGSKMTKAECHGTYLVFSNGKI 769
I + +++ + L ++FA+M QLF +F +
Sbjct: 145 ----IPGMLSVIALMTLFFYIFAIMATQLFGERFPE------------------------ 176
Query: 770 DEPSIEVREWSKHRFHFDDVAKAMLTLFTVSTFEGWPGLLYNSIDSNLENHGPIHNYRPI 829
F + ++ TLF V T E W + P+ P
Sbjct: 177 ---------------WFGTLGESFYTLFQVMTLESWSMGIVR----------PLMEVYPY 211
Query: 830 VATYYIIYIIIIAFFMVNIFVGFVIVTFQNEGEQEYKNCELDKNQR 875
++I +I ++ F M+N+ V + ++E ++ +
Sbjct: 212 AWVFFIPFIFVVTFVMINLVVAICVDAMAILNQKEEQHIIDEVQSH 257
Score = 89.0 bits (221), Expect = 3e-19
Identities = 17/104 (16%), Positives = 43/104 (41%), Gaps = 1/104 (0%)
Query: 93 TNFDNFGLAMLTVFQCITLEGWTDVLYNIEDALGRTWQWTYFVSMVILGAFFVMNLILGV 152
F G + T+FQ +TLE W+ + + W +F+ + + F ++NL++ +
Sbjct: 176 EWFGTLGESFYTLFQVMTLESWSMGIVRPLME-VYPYAWVFFIPFIFVVTFVMINLVVAI 234
Query: 153 LSGEFSKEREKAKARGDFHKLREKQQIEEDLRGYLDWITQAEDI 196
+ +K + + I ++ + I + +++
Sbjct: 235 CVDAMAILNQKEEQHIIDEVQSHEDNINNEIIKLREEIVELKEL 278
Score = 78.2 bits (193), Expect = 1e-15
Identities = 19/81 (23%), Positives = 36/81 (44%), Gaps = 7/81 (8%)
Query: 1 PFEYLILLTIFANCVALAVYTPYPNSDSNSTNAYLENIEYIFLVIFTVECVMKILAYGFV 60
F I+ I N + + + T + S Y I + IFT+E +++I +
Sbjct: 31 FFTKFIIYLIVLNGITMGLETS--KTFMQSFGVYTTLFNQIVITIFTIEIILRIYVHRI- 87
Query: 61 AHPGAYLRNGWNLLDFTIVVI 81
++ ++ W+L DF +V I
Sbjct: 88 ----SFFKDPWSLFDFFVVAI 104
Score = 43.6 bits (103), Expect = 3e-04
Identities = 10/50 (20%), Positives = 19/50 (38%), Gaps = 3/50 (6%)
Query: 1408 IINLFVAVIMDNFDYLTRDWSILGPHHLDEFIRLWSEYDPDAKGRIKHLD 1457
+INL VA+ +D L + H +DE + + + +
Sbjct: 227 MINLVVAICVDAMAILNQKEE---QHIIDEVQSHEDNINNEIIKLREEIV 273
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium
channel, sodium selective, gated ION channel; HET: BNG
PX4; 3.05A {Alpha proteobacterium HIMB114}
Length = 229
Score = 262 bits (672), Expect = 3e-80
Identities = 55/277 (19%), Positives = 119/277 (42%), Gaps = 54/277 (19%)
Query: 896 LQYKIWWFVTSQYFEYTIFCLIMINTLTLAMKFYRQPLFYADILDKMNMFFTTVFALEFV 955
+ ++ F++T+ +I++N + + Y + + + ++ T F +E +
Sbjct: 1 MTPFFSSLKDNRIFQFTVVSIIILNAVLIGATTYELDPLFLETIHLLDYGITIFFVIEIL 60
Query: 956 FKLAAFRFK-NYFSDAWNVFDFVIVMGSFIDIFSDSPPHAAAKATIPGSHEQTSGRLSIN 1014
+ + K ++F WN+FD VIV S I I ++S S
Sbjct: 61 IRFIGEKQKADFFKSGWNIFDTVIVAISLIPIPNNS---------------------SFL 99
Query: 1015 FFRLFRVMRLIKLLSRGEGIRTLLWTFIKSFQALPYVALLIVMLFFIYAVIGMQVFGKIA 1074
RL R+ R+++L+S ++ ++ ++S + + +V+LL+ ++ +IYA +G +FG
Sbjct: 100 VLRLLRIFRVLRLISVIPELKQIIEAILESVRRVFFVSLLLFIILYIYATMGAILFGN-- 157
Query: 1075 LVFGGGIHRNNNFQTFPQAVLVLFRSATGEAWQDIMLDCSNRPSEVKCDAASDGNPTNDD 1134
+ + +++ LF+ T +W+ +ML
Sbjct: 158 -------DDPSRWGDLGISLITLFQVLTLSSWETVMLPMQE------------------- 191
Query: 1135 NVSCGSDIAYPYFISFYVLCSFLIINLFVAVIMDNFD 1171
++ YF SF ++CS I+NL +A+++D
Sbjct: 192 ----IYWWSWVYFFSFIIICSITILNLVIAILVDVVI 224
Score = 156 bits (397), Expect = 3e-43
Identities = 38/215 (17%), Positives = 79/215 (36%), Gaps = 40/215 (18%)
Query: 249 MRRACRKAVKSQGFYWLIIILVFLNTGVLATEHYQQPKWLDSFQEVTNIFFVALFTMEMT 308
M ++ F + ++ ++ LN ++ Y+ + + F +E+
Sbjct: 1 MTPFFSSLKDNRIFQFTVVSIIILNAVLIGATTYELDPLFLETIHLLDYGITIFFVIEIL 60
Query: 309 LKMYSLGFQEVTNIFFVALFTMEMTLKMYSLGFQGYFVSLFNRFDCFVVIGSIGEMILTR 368
++ + +F S +N FD +V S+
Sbjct: 61 IRFIGEKQK------------------------ADFFKSGWNIFDTVIVAISLIP----- 91
Query: 369 TNIMPPLGVSVLRCVRLLRVFKVTKYWRSLSNLVASLLNSIQSIASLLLLLFLFIVIFAL 428
I VLR +R+ RV ++ L ++ ++L S++ + + LLLF+ + I+A
Sbjct: 92 --IPNNSSFLVLRLLRIFRVLRLISVIPELKQIIEAILESVRRVFFVSLLLFIILYIYAT 149
Query: 429 LGMQVFGGKFNFNPTIAKPRSNFDSFWQSLLTVFQ 463
+G +FG + SL+T+FQ
Sbjct: 150 MGAILFGNDDPS---------RWGDLGISLITLFQ 175
Score = 137 bits (348), Expect = 1e-36
Identities = 47/321 (14%), Positives = 105/321 (32%), Gaps = 116/321 (36%)
Query: 566 RVWCHWICNHDHFGNAILF-----------------------LGYFDNFFTAVFTIEILL 602
+ + ++ F ++ + D T F IEIL+
Sbjct: 2 TPFFSSLKDNRIFQFTVVSIIILNAVLIGATTYELDPLFLETIHLLDYGITIFFVIEILI 61
Query: 603 KIISYGFILHDGAFCRSSFNLLDLLVVIVSVVAIYWNSAAIAFVKILRVLRVLRPLRAIN 662
+ I F +S +N+ D ++V +S++ I NS+ +LR+LR+ R LR I+
Sbjct: 62 RFIGEKQKAD---FFKSGWNIFDTVIVAISLIPIPNNSS----FLVLRLLRIFRVLRLIS 114
Query: 663 RAKGLKHVVQCVIVAVKTIGNIVLVTCLLQFMFAVIGVQLFKYVVKCVIVAIKTIGNIML 722
LK +++ ++ + ++ + + L
Sbjct: 115 VIPELKQIIEAILES------------------------------------VRRVFFVSL 138
Query: 723 VTYLLSFMFAVMGVQLFKGKFFQCNDGSKMTKAECHGTYLVFSNGKIDEPSIEVREWSKH 782
+ +++ +++A MG LF
Sbjct: 139 LLFIILYIYATMGAILFGNDD--------------------------------------- 159
Query: 783 RFHFDDVAKAMLTLFTVSTFEGWPGLLYNSIDSNLENHGPIHNYRPIVATYYIIYIIIIA 842
+ D+ +++TLF V T W ++ P+ Y+ +III +
Sbjct: 160 PSRWGDLGISLITLFQVLTLSSWETVML-----------PMQEIYWWSWVYFFSFIIICS 208
Query: 843 FFMVNIFVGFVIVTFQNEGEQ 863
++N+ + ++ + +
Sbjct: 209 ITILNLVIAILVDVVIQKKLE 229
Score = 79.7 bits (197), Expect = 1e-16
Identities = 18/74 (24%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Query: 89 NNGITNFDNFGLAMLTVFQCITLEGWTDVLYNIEDALGRTWQWTYFVSMVILGAFFVMNL 148
N+ + + + G++++T+FQ +TL W V+ +++ W W YF S +I+ + ++NL
Sbjct: 157 NDDPSRWGDLGISLITLFQVLTLSSWETVMLPMQE--IYWWSWVYFFSFIIICSITILNL 214
Query: 149 ILGVLSGEFSKERE 162
++ +L +++
Sbjct: 215 VIAILVDVVIQKKL 228
Score = 77.0 bits (190), Expect = 1e-15
Identities = 15/81 (18%), Positives = 33/81 (40%), Gaps = 6/81 (7%)
Query: 1 PFEYLILLTIFANCVALAVYTPYPNSDSNSTNAYLENIEYIFLVIFTVECVMKILAYGFV 60
F++ ++ I N V + T + ++Y + F +E +++ +
Sbjct: 13 IFQFTVVSIIILNAVLIGATTY---ELDPLFLETIHLLDYGITIFFVIEILIRFIGEKQ- 68
Query: 61 AHPGAYLRNGWNLLDFTIVVI 81
+ ++GWN+ D IV I
Sbjct: 69 --KADFFKSGWNIFDTVIVAI 87
Score = 29.6 bits (67), Expect = 6.6
Identities = 5/14 (35%), Positives = 10/14 (71%)
Query: 1408 IINLFVAVIMDNFD 1421
I+NL +A+++D
Sbjct: 211 ILNLVIAILVDVVI 224
>4dck_A Sodium channel protein type 5 subunit alpha; IQ-motif, EF-hand,
voltage-gated sodium channel regulation, CTD binds to
FGF13 and CAM. CAM binds to Ca2+.; 2.20A {Homo sapiens}
PDB: 2kbi_A
Length = 168
Score = 154 bits (391), Expect = 2e-43
Identities = 31/164 (18%), Positives = 65/164 (39%), Gaps = 15/164 (9%)
Query: 1168 DNFDYLTRDWSI-LGPHHLDEFIRLWSEYDPDAKGRIKHLDVVTLLRKISPPLGFGKLCP 1226
+NF T + + L D F +W ++DP+A I++ + +S PL K P
Sbjct: 1 ENFSVATEESTEPLSEDDFDMFYEIWEKFDPEATQFIEYSVLSDFADALSEPLRIAK--P 58
Query: 1227 HRVACKRLVSMNMPLNSDGTVLFNATLFAVVRTSLRIKTEGNIDDANAELRAVIKKIWKR 1286
+++ L++M++P+ S + LFA + + G +D ++
Sbjct: 59 NQI---SLINMDLPMVSGDRIHCMDILFAFTKRV--LGESGEMDALKIQMEEKFMAANP- 112
Query: 1287 TSNELLNQVVPPPGGEEEVTVGKFYATFLIQDYFRRFKKRKEQE 1330
+++ P + + +IQ FRR ++ +
Sbjct: 113 ------SKISYEPITTTLRRKHEEVSAMVIQRAFRRHLLQRSLK 150
Score = 100 bits (250), Expect = 2e-24
Identities = 22/150 (14%), Positives = 42/150 (28%), Gaps = 57/150 (38%)
Query: 1418 DNFDYLTRDWSI-LGPHHLDEFIRLWSEYDPDAKGRIKHLDVVTLLRKISPPLGFGK--- 1473
+NF T + + L D F +W ++DP+A I++ + +S PL K
Sbjct: 1 ENFSVATEESTEPLSEDDFDMFYEIWEKFDPEATQFIEYSVLSDFADALSEPLRIAKPNQ 60
Query: 1474 ---------LCP-HRVACEE---------------------------------------- 1483
+ R+ C +
Sbjct: 61 ISLINMDLPMVSGDRIHCMDILFAFTKRVLGESGEMDALKIQMEEKFMAANPSKISYEPI 120
Query: 1484 ---EVTVGKFYATFLIQDYFRRFKKRKEQE 1510
+ + +IQ FRR ++ +
Sbjct: 121 TTTLRRKHEEVSAMVIQRAFRRHLLQRSLK 150
>2kav_A Sodium channel protein type 2 subunit alpha; voltage-gated sodium
channel, alternative splicing, disease epilepsy,
glycoprotein, ION transport; NMR {Homo sapiens} PDB:
2kbi_A
Length = 129
Score = 137 bits (347), Expect = 7e-38
Identities = 31/141 (21%), Positives = 58/141 (41%), Gaps = 15/141 (10%)
Query: 1139 GSDIAYPYFISFYVLCSFLIINLFVAVIMDNFDYLTRDWSI-LGPHHLDEFIRLWSEYDP 1197
GS + + S + +A +NF T + + L + F +W ++DP
Sbjct: 2 GSSHHHHHHSSG-----LVPRGSHMAS--ENFSVATEESAEPLSEDDFEMFYEVWEKFDP 54
Query: 1198 DAKGRIKHLDVVTLLRKISPPLGFGKLCPHRVACKRLVSMNMPLNSDGTVLFNATLFAVV 1257
DA I+ + + PPL K P++V +L++M++P+ S + LFA
Sbjct: 55 DATQFIEFAKLSDFADALDPPLLIAK--PNKV---QLIAMDLPMVSGDRIHCLDILFAFT 109
Query: 1258 RTSLRIKTEGNIDDANAELRA 1278
+ L G +D ++
Sbjct: 110 KRVL--GESGEMDALRIQMEE 128
Score = 94.5 bits (235), Expect = 8e-23
Identities = 16/74 (21%), Positives = 29/74 (39%), Gaps = 3/74 (4%)
Query: 1408 IINLFVAVIMDNFDYLTRDWSI-LGPHHLDEFIRLWSEYDPDAKGRIKHLDVVTLLRKIS 1466
+A +NF T + + L + F +W ++DPDA I+ + +
Sbjct: 16 PRGSHMAS--ENFSVATEESAEPLSEDDFEMFYEVWEKFDPDATQFIEFAKLSDFADALD 73
Query: 1467 PPLGFGKLCPHRVA 1480
PPL K ++
Sbjct: 74 PPLLIAKPNKVQLI 87
>3g43_E Voltage-dependent L-type calcium channel subunit alpha-1C;
calmodulin-bound, coiled coil, acetylation, methylation,
phosphoprotein, polymorphism; 2.10A {Homo sapiens} PDB:
3oxq_E
Length = 81
Score = 129 bits (326), Expect = 1e-35
Identities = 59/80 (73%), Positives = 73/80 (91%), Gaps = 1/80 (1%)
Query: 1249 FNATLFAVVRTSLRIKTEGNIDDANAELRAVIKKIWKRTSNELLNQVVPPPGGEEEVTVG 1308
+TLFA+VRT+LRIKTEGN++ AN ELRA+IKKIWKRTS +LL+QVVPP G++EVTVG
Sbjct: 3 LGSTLFALVRTALRIKTEGNLEQANEELRAIIKKIWKRTSMKLLDQVVPPA-GDDEVTVG 61
Query: 1309 KFYATFLIQDYFRRFKKRKE 1328
KFYATFLIQ+YFR+FKKR++
Sbjct: 62 KFYATFLIQEYFRKFKKREQ 81
Score = 53.7 bits (129), Expect = 6e-09
Identities = 21/27 (77%), Positives = 27/27 (100%)
Query: 1482 EEEVTVGKFYATFLIQDYFRRFKKRKE 1508
++EVTVGKFYATFLIQ+YFR+FKKR++
Sbjct: 55 DDEVTVGKFYATFLIQEYFRKFKKREQ 81
>4dey_B Voltage-dependent L-type calcium channel subunit; maguk, voltage
dependent calcium channel, transport protein; 1.95A
{Oryctolagus cuniculus} PDB: 1vyt_E
Length = 106
Score = 123 bits (310), Expect = 3e-33
Identities = 52/104 (50%), Positives = 67/104 (64%), Gaps = 6/104 (5%)
Query: 154 SGEFSKEREKAKARGDFHKLREKQQIEEDLRGYLDWITQAEDIEPEGE-----ERANHHD 208
SGEFSKEREKAKARGDF KLREKQQ+EEDL+GYLDWITQAEDI+PE E E +
Sbjct: 2 SGEFSKEREKAKARGDFQKLREKQQLEEDLKGYLDWITQAEDIDPENEDEGMDEEKPRNM 61
Query: 209 QKNKSSSETESADRLEGDEGENQESWWRKKNK-DFDRNNRRMRR 251
S +E+ + + + G + E + R ++ + +R RR
Sbjct: 62 SMPTSETESVNTENVAGGDIEGENCGARLAHRISKSKFSRYWRR 105
>4dex_B Voltage-dependent N-type calcium channel subunit; maguk, voltage
dependent calcium channel, transport protein; 2.00A
{Rattus norvegicus}
Length = 113
Score = 121 bits (303), Expect = 3e-32
Identities = 34/110 (30%), Positives = 56/110 (50%), Gaps = 3/110 (2%)
Query: 156 EFSKEREKAKARGDFHKLREKQQIEEDLRGYLDWITQAEDIEPEGEERANHHDQKNKSSS 215
EF+KERE+ + R F KLR +QQIE +L GYL+WI +AE++ EE N ++ +
Sbjct: 3 EFAKERERVENRRAFLKLRRQQQIERELNGYLEWIFKAEEVMLA-EEDKNAEEKSPLDAV 61
Query: 216 ETESADRLEGDEGENQESWWRKKNKDFDRNNRRMRRACRKAVKSQG-FYW 264
+A + ++ + E + D RA K+ K++ Y+
Sbjct: 62 LKRAATKKSRNDLIHAEEGE-DRFVDLCAAGSPFARASLKSGKTESSSYF 110
>2be6_D Voltage-dependent L-type calcium channel alpha-1C; calmodulin, IQ
domain, inactivation, facili calcium-dependent, gating,
voltage-gated; 2.00A {Homo sapiens}
Length = 37
Score = 61.3 bits (148), Expect = 3e-12
Identities = 26/33 (78%), Positives = 29/33 (87%)
Query: 1300 GGEEEVTVGKFYATFLIQDYFRRFKKRKEQELK 1332
G +EVTVGKFYATFLIQ+YFR+FKKRKEQ L
Sbjct: 1 GHMDEVTVGKFYATFLIQEYFRKFKKRKEQGLV 33
Score = 57.8 bits (139), Expect = 6e-11
Identities = 25/31 (80%), Positives = 28/31 (90%)
Query: 1482 EEEVTVGKFYATFLIQDYFRRFKKRKEQELK 1512
+EVTVGKFYATFLIQ+YFR+FKKRKEQ L
Sbjct: 3 MDEVTVGKFYATFLIQEYFRKFKKRKEQGLV 33
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor,
voltage dependent, ION CH shaker, membrane protein,
eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB:
3lnm_B* 3lut_B* 2a79_B*
Length = 514
Score = 69.3 bits (169), Expect = 6e-12
Identities = 29/179 (16%), Positives = 75/179 (41%), Gaps = 11/179 (6%)
Query: 259 SQGFYWLIIILVFLNTGVLATEH---YQQPKWLDSFQEVTNIFFVALFTMEMTLKMYSLG 315
++ + ++++ ++ E ++ VT + ++
Sbjct: 181 ARIIAIVSVMVILISIVSFCLETLPIFRDENEDMHGGGVTFHTYSQSTIGYQQSTSFTDP 240
Query: 316 FQEVTNIFFVALFTMEMTLKMYSL-GFQGYFVSLFNRFDCFVVIGSIGEMILTRTNI--- 371
F + + F+ E ++ ++ G+F ++ N D +I + LT +N
Sbjct: 241 F-FIVETLCIIWFSFEFLVRFFACPSKAGFFTNIMNIIDIVAIIPYYVTIFLTESNKSVL 299
Query: 372 ---MPPLGVSVLRCVRLLRVFKVTKYWRSLSNLVASLLNSIQSIASLLLLLFLFIVIFA 427
V + R +R+LR+FK++++ + L L +L S++ + L+ LF+ +++F+
Sbjct: 300 QFQNVRRVVQIFRIMRILRIFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIGVILFS 358
Score = 62.8 bits (152), Expect = 6e-10
Identities = 34/166 (20%), Positives = 69/166 (41%), Gaps = 18/166 (10%)
Query: 929 YRQPLFYADILDKMNMFFTTVFALEFVFKL-AAFRFKNYFSDAWNVFDFVIVMGSFIDIF 987
Y+Q + D + F+ EF+ + A +F++ N+ D V ++ ++ IF
Sbjct: 231 YQQSTSFTDPFFIVETLCIIWFSFEFLVRFFACPSKAGFFTNIMNIIDIVAIIPYYVTIF 290
Query: 988 SDSPPHAAAKATIPGSHEQTSGRLSINFFRLFRVMRLIKLLSRGEGIRTLLWTFIKSFQA 1047
+ + + R + FR+ R++R+ KL +G++ L T S +
Sbjct: 291 --------LTESNKSVLQFQNVRRVVQIFRIMRILRIFKLSRHSKGLQILGQTLKASMRE 342
Query: 1048 LPYVALLIVMLFFIYAVIGMQVFGKIALVFGGGIHRNNNFQTFPQA 1093
L +++FF+ IG+ +F R++ F + P A
Sbjct: 343 ------LGLLIFFL--FIGVILFSSAVYFAEAD-ERDSQFPSIPDA 379
Score = 53.1 bits (127), Expect = 7e-07
Identities = 19/124 (15%), Positives = 50/124 (40%), Gaps = 12/124 (9%)
Query: 584 FLGYFDNFFTAVFTIEILLKIISYGFILHDGAFCRSSFNLLDL---------LVVIVSVV 634
+ F+ E L++ + F + N++D+ + + S
Sbjct: 240 PFFIVETLCIIWFSFEFLVRFFACPSKAG---FFTNIMNIIDIVAIIPYYVTIFLTESNK 296
Query: 635 AIYWNSAAIAFVKILRVLRVLRPLRAINRAKGLKHVVQCVIVAVKTIGNIVLVTCLLQFM 694
++ V+I R++R+LR + +KGL+ + Q + +++ +G ++ + +
Sbjct: 297 SVLQFQNVRRVVQIFRIMRILRIFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIGVIL 356
Query: 695 FAVI 698
F+
Sbjct: 357 FSSA 360
Score = 30.8 bits (69), Expect = 4.3
Identities = 9/60 (15%), Positives = 23/60 (38%), Gaps = 3/60 (5%)
Query: 21 TPYPNSDSNSTNAYLENIEYIFLVIFTVECVMKILAYGFVAHPGAYLRNGWNLLDFTIVV 80
+ S S +E + ++ F+ E +++ A + N N++D ++
Sbjct: 227 STIGYQQSTSFTDPFFIVETLCIIWFSFEFLVRFFA---CPSKAGFFTNIMNIIDIVAII 283
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA;
3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Length = 355
Score = 63.7 bits (155), Expect = 2e-10
Identities = 16/172 (9%), Positives = 44/172 (25%), Gaps = 33/172 (19%)
Query: 259 SQGFYWLIIILVFLNTGVLATEHYQQPKWLDSFQEVTNIFFVALFTMEMTLKMYSLGFQE 318
+ + L +L +A + +++ +AL +
Sbjct: 7 LRIYAPLNAVLAAPGLLAVA---------ALTIPDMSGRSRLALAALL------------ 45
Query: 319 VTNIFFVALFTMEMTLKMYSLGFQG-YFVSLFNRFDCFVVIGSIGEMILTRTNIMPPLGV 377
+ +++ + + D V+ + +L G
Sbjct: 46 ---AVIWGAYLLQLAATLLKRRAGVVRDRTPKIAIDVLAVLVPLAAFLLD--------GS 94
Query: 378 SVLRCVRLLRVFKVTKYWRSLSNLVASLLNSIQSIASLLLLLFLFIVIFALL 429
+ + K + L L N +++ + L + + AL
Sbjct: 95 PDWSLYCAVWLLKPLRDSTFFPVLGRVLANEARNLIGVTTLFGVVLFAVALA 146
Score = 63.0 bits (153), Expect = 3e-10
Identities = 24/193 (12%), Positives = 44/193 (22%), Gaps = 37/193 (19%)
Query: 906 SQYFEYTIFCLIMINTLTLA---MKFYRQPLFYADILDKMNMFFTTVFALEFVFKLAAFR 962
+ + L L +A + L + + L+ L R
Sbjct: 7 LRIYAPLNAVLAAPGLLAVAALTIPDMSGR--SRLALAALLAVIWGAYLLQLAATLLKRR 64
Query: 963 FK-NYFSDAWNVFDFVIVMGSFIDIFSDSPPHAAAKATIPGSHEQTSGRLSINFFRLFRV 1021
D + V+ + GS + L+
Sbjct: 65 AGVVRDRTPKIAIDVLAVLVPLAAFL------------LDGSP----------DWSLYCA 102
Query: 1022 MRLIKLLSRGEGIRTLLWTFIKSFQALPYVALLIVMLFFIYAVIGMQVFGKIALVFGGGI 1081
+ L+K L L + L + + + A V I
Sbjct: 103 VWLLKPLRDSTFFPVLGRVLANEARNL--------IGVTTLFGVVLFAVALAAYVIERDI 154
Query: 1082 HRNNNFQTFPQAV 1094
F + PQA+
Sbjct: 155 Q-PEKFGSIPQAM 166
Score = 55.6 bits (134), Expect = 5e-08
Identities = 11/116 (9%), Positives = 39/116 (33%), Gaps = 8/116 (6%)
Query: 583 LFLGYFDNFFTAVFTIEILLKIISYGFILHDGAFCRSSFNLLDLLVVIVSVVAIYWNSAA 642
L L + +++ ++ + R+ +D+L V+V + A
Sbjct: 39 LALAALLAVIWGAYLLQLAATLLKRRAGVV---RDRTPKIAIDVLAVLVPLAAF-----L 90
Query: 643 IAFVKILRVLRVLRPLRAINRAKGLKHVVQCVIVAVKTIGNIVLVTCLLQFMFAVI 698
+ + + L+ + + + + + + + + + ++ F A+
Sbjct: 91 LDGSPDWSLYCAVWLLKPLRDSTFFPVLGRVLANEARNLIGVTTLFGVVLFAVALA 146
Score = 37.1 bits (86), Expect = 0.043
Identities = 9/75 (12%), Positives = 22/75 (29%), Gaps = 5/75 (6%)
Query: 2 FEYLILLTIFANCVALAVYTPYPNSDSNSTNAYLENIEYIFLVIFTVECVMKILAYGFVA 61
+ L + +A+A T P+ + L + + + ++ +L
Sbjct: 10 YAPLNAVLAAPGLLAVAALT-IPDMSGR-SRLALAALLAVIWGAYLLQLAATLLK---RR 64
Query: 62 HPGAYLRNGWNLLDF 76
R +D
Sbjct: 65 AGVVRDRTPKIAIDV 79
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 64.1 bits (155), Expect = 3e-10
Identities = 81/571 (14%), Positives = 170/571 (29%), Gaps = 172/571 (30%)
Query: 145 VMNLILGVLSGE-----FSKEREKAKARGDFHKLREKQQ------IEEDLRGYLDWIT-- 191
V ++ +LS E + + F L KQ+ +EE LR ++
Sbjct: 38 VQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSP 97
Query: 192 -QAEDIEPEGEERANHHDQKNKSSSETESADRLEGDEGENQE----SWWRKKNKDFDRNN 246
+ E +P R E DRL D NQ + R +
Sbjct: 98 IKTEQRQPSMMTR-----------MYIEQRDRLYND---NQVFAKYNVSRLQPYL----- 138
Query: 247 RRMRRACRKAVKSQGFYWLIIILVF--LNTG--VLATEHYQQPKWLDSFQEVTNIFFVAL 302
++R+A + ++ +L+ L +G +A + K IF++ L
Sbjct: 139 -KLRQALLELRPAKN------VLIDGVLGSGKTWVALDVCLSYKVQCKMDF--KIFWLNL 189
Query: 303 ---FTMEMTLKMY-SLGFQEVTNIFFVALFTMEMTLKMYS--------LGFQGYFVSL-- 348
+ E L+M L +Q N + + + L+++S L + Y L
Sbjct: 190 KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV 249
Query: 349 ---------FNRFD--CFVVIGSIGEMILTR----TNIMPPLGVSVLRCVRLLRVFKVTK 393
+N F+ C + ++ TR T+ + + + +
Sbjct: 250 LLNVQNAKAWNAFNLSCKI-------LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE 302
Query: 394 YWRSLSNLVASLLN-SIQSIASLLLLLF-LFIVIFALLGMQVFGGKFNF--NPTIAKPRS 449
S L+ L+ Q + +L + I A ++ ++ + K +
Sbjct: 303 ---VKS-LLLKYLDCRPQDLPREVLTTNPRRLSIIAES-IRDGLATWDNWKHVNCDKLTT 357
Query: 450 NFDSFWQSL-----------LTVFQQEQKGQEESP-PRSIME----NEEEEEEGSIIEGE 493
+S L L+VF + P ++ + + + ++
Sbjct: 358 IIESSLNVLEPAEYRKMFDRLSVFP------PSAHIPTILLSLIWFDVIKSDVMVVVN-- 409
Query: 494 EIEDESVREEEDGVKVQLENCDSEFYDYSYQADIMNNEDARP---RRLSEFNTATKKQPI 550
++ S+ V+ + +S S ++ + R + +
Sbjct: 410 KLHKYSL--------VEKQPKESTISIPSIYLELKVKLENEYALHRSIVD---------- 451
Query: 551 PPASSFFIFSATNPFRVWCHWICNHDHFGNAIL-FLGY---------FDNFFTAVFTIEI 600
N + + + +G+ F VF
Sbjct: 452 ----------HYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVF---- 497
Query: 601 LLKIISYGF----ILHDGAFCRSSFNLLDLL 627
+ + F I HD +S ++L+ L
Sbjct: 498 ----LDFRFLEQKIRHDSTAWNASGSILNTL 524
Score = 63.7 bits (154), Expect = 5e-10
Identities = 101/631 (16%), Positives = 195/631 (30%), Gaps = 175/631 (27%)
Query: 1102 TGE---AWQDIMLDCSNRPSEVK---CDAASD------GNPTNDDNVSCGSDIAYPYFIS 1149
TGE ++DI+ + V C D D + ++ +
Sbjct: 11 TGEHQYQYKDILSV--FEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRL- 67
Query: 1150 FYVLCSF--LIINLFV-AVIMDNFDYL-------TRDWSILGPHHLDEFIRLWSEYDPDA 1199
F+ L S ++ FV V+ N+ +L R S++ ++++ RL+++ A
Sbjct: 68 FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA 127
Query: 1200 KG---RIKHLDVV-TLLRKISPP--------LGFGKLCPHRVACK-RLVSMNMP------ 1240
K R++ + L ++ P LG GK C V M
Sbjct: 128 KYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWL 187
Query: 1241 ----LNSDGTVLFN-ATLFAVVRTSLRIKTEG------NIDDANAELRAVI--------- 1280
NS TVL L + + +++ I AELR ++
Sbjct: 188 NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL 247
Query: 1281 --------KKIWKR----------TSNELLNQVVPPPGGEEEVTVGKFYATFL---IQDY 1319
K W T + + + +++ T ++
Sbjct: 248 LVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFL-SAATTTHISLDHHSMTLTPDEVKSL 306
Query: 1320 FRRFKKRKEQELKDGDKESHNTVTLQAGL-------------RTLHDAGPELKRAISGNL 1366
++ + Q+L +E T + + H +L I +L
Sbjct: 307 LLKYLDCRPQDLP---REVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSL 363
Query: 1367 EELVDDNPEPSHR-----VSPTNSVDYLPYTSIQL--NGMNDSSKMNNIINLFVAVIMDN 1419
L + E V P ++ ++P + L + S M ++N
Sbjct: 364 NVL--EPAEYRKMFDRLSVFPPSA--HIPTILLSLIWFDVIKSDVM-VVVNKLH-----K 413
Query: 1420 FDYLTRDW--SILGPHHLDEFIRLWSEYDPDAKGRIKHLDVVTLLRK-----ISPP---- 1468
+ + + S + + +++ E + I +D + + + PP
Sbjct: 414 YSLVEKQPKESTISIPSIYLELKVKLENEYALHRSI--VDHYNIPKTFDSDDLIPPYLDQ 471
Query: 1469 -----LGFGKLCPHRVACEEEVTVGKFYATFLIQDYFRRFKKRKEQELKDGDKESHNTVT 1523
+G H E + F FL D+ RF ++K ++ + + +
Sbjct: 472 YFYSHIGH-----HLKNIEHPERMTLFRMVFL--DF--RFLEQK---IRHDSTAWNASGS 519
Query: 1524 LQAGLRTLHDAGPELKRAISGNLEELVDDNPEPSHRVLAEYGLGKFAY-PELVKYTSKE- 1581
+ L TL LK + D++P+ V + F E SK
Sbjct: 520 I---LNTLQQ----LKFY----KPYICDNDPKYERLV---NAILDFLPKIEENLICSKYT 565
Query: 1582 --MQEALNMTQEEMDRAAHKLIIQERHNQFQ 1610
++ AL A + I +E H Q Q
Sbjct: 566 DLLRIALM--------AEDEAIFEEAHKQVQ 588
Score = 57.9 bits (139), Expect = 2e-08
Identities = 102/717 (14%), Positives = 174/717 (24%), Gaps = 235/717 (32%)
Query: 935 YADILDKMNMFFTTVFALEFVFKLAAFRFKNYFSDAWNVFDFVIVMGS-------FIDIF 987
Y DIL F F F K K+ S D +I+
Sbjct: 18 YKDILS----VFEDAFVDNFDCKDVQDMPKSILSKE--EIDHIIMSKDAVSGTLRLFWTL 71
Query: 988 SDSPPHAAAK--------------ATIPGSHEQTSGRLSINFF----RLFR-VMRLIKL- 1027
K + I Q S + + RL+ K
Sbjct: 72 LSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMM-TRMYIEQRDRLYNDNQVFAKYN 130
Query: 1028 LSRGEGIRTLLWTFIKSFQALPYVALLIVMLFFIYAVIGMQVFGKIALV----FGGGIHR 1083
+SR + L + + V + G+ GK + +
Sbjct: 131 VSRLQPYLKLR-QALLELRPAKNVL-----------IDGVLGSGKTWVALDVCLSYKVQC 178
Query: 1084 NNNFQTFPQAVLVLFRSATGEAWQDIMLDCSNRPSEV---------KCDAASDGNPTNDD 1134
+F+ F W + L N P V + D +
Sbjct: 179 KMDFKIF---------------W--LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSS 221
Query: 1135 NVSCGSDIAYPYFISF-----YVLCSFLII--NLFVAVIMDNFDY------LTRDWSI-- 1179
N+ Y C L++ N+ A + F+ TR +
Sbjct: 222 NIKLRIHSIQAELRRLLKSKPYENC--LLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTD 279
Query: 1180 -LGPHHLDEFI---RLWSEYDPDAKGRIKHLDVVTLLRKISPPLG--FGKLCPHRVACK- 1232
L + + K LL K L L P
Sbjct: 280 FLSAATTTHISLDHHSMTLTPDEVKS---------LLLKY---LDCRPQDL-PRE-VLTT 325
Query: 1233 --RLVSM------NMPLNSDGTVLFNA-TLFAVVRTSLRIKTEGNI-----------DDA 1272
R +S+ + D N L ++ +SL + A
Sbjct: 326 NPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSA 385
Query: 1273 NAELRAVIKKIWKRTSNELLNQVVPPPGGEEEVTVGKFYATFLIQDYFRRFKKRKEQELK 1332
+ ++ IW + V V K + L++ K
Sbjct: 386 HIPT-ILLSLIWFDVIKS-----------DVMVVVNKLHKYSLVE--------------K 419
Query: 1333 DGDKESHNTVTLQAGLRTLHDAGPELKRAISGNLEELVDDNPEPSHRVSPTNSVDYLPYT 1392
+ + ++ ELK + N L HR + VD+ Y
Sbjct: 420 QPKESTI----------SIPSIYLELKVKLE-NEYAL--------HR----SIVDH--YN 454
Query: 1393 SIQLNGMNDSSKMNNIINLFVAVIMDNFDYLTRDWSILGPHHLDEFIRLWSEYDPDAKGR 1452
+ +D D + Y S +G HHL
Sbjct: 455 IPKTFDSDDLIPPYL----------DQYFY-----SHIG-HHLKN--------------- 483
Query: 1453 IKHLDVVTLLRKISPPLGF--GKLCPHRVACEEEVTVGKFYATFLIQDYFRRFKKRKEQE 1510
I+H + +TL R + F K+ A ++ +Q + +K
Sbjct: 484 IEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILN-----TLQQ-LKFYKPYIC-- 535
Query: 1511 LKDGDKESHNTVTLQAGLRTLHDAGPELKRAISGNLEELVDDNP-----EPSHRVLA 1562
D + + A L L L + +L + E +H+ +
Sbjct: 536 ----DNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQ 588
Score = 57.6 bits (138), Expect = 3e-08
Identities = 87/673 (12%), Positives = 177/673 (26%), Gaps = 239/673 (35%)
Query: 736 VQLFKGKF---FQCNDGSKMTKAECHGTYLVFSNGKIDEPSIEVREWSKHRFHFD---DV 789
+ +F+ F F C D M K+ + S +ID + S F
Sbjct: 22 LSVFEDAFVDNFDCKDVQDMPKS-------ILSKEEIDHIIMSKDAVSGTLRLFWTLLSK 74
Query: 790 AKAMLTLFTVSTFE---GWPGLLYNSI-----------DSNLENHGPIHNYRPIVATYYI 835
+ M+ F + L + I +E ++N + A Y +
Sbjct: 75 QEEMVQKFVEEVLRINYKF---LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV 131
Query: 836 -----IYIIIIAFF----MVNIFV----GFVIVTFQNEGEQEYKNCELDKNQRNCIEFAL 882
+ A N+ + G G K +
Sbjct: 132 SRLQPYLKLRQALLELRPAKNVLIDGVLGS--------G----KTW-------------V 166
Query: 883 KAKPVRRYIPKQRLQYKIWWFVTSQYFEYTIFCLIMINTLTLAMK---------FYRQPL 933
Y + ++ +KI+W L M+ L + L
Sbjct: 167 ALDVCLSYKVQCKMDFKIFWLNLKNCNS-PETVLEMLQKLLYQIDPNWTSRSDHSSNIKL 225
Query: 934 FYADILDKMNMFFTTVFALEFVFKLAAFRFKN--------YFSDAWNVFDF---VIVMGS 982
I ++ + ++N + AWN F+ +++
Sbjct: 226 RIHSIQAELRRLL------------KSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTR 273
Query: 983 FIDIFSDSPPHAAAKATIPGSHEQTSGRLSINFFRLFRVMRLIKLLSRGEGIRTLLWTFI 1042
F + LS + L+ E ++LL ++
Sbjct: 274 FKQVTDF---------------------LSAATTTHISLDHHSMTLTPDEV-KSLLLKYL 311
Query: 1043 K-SFQALPYVALLIVMLFFIYAVIGMQVFGKIALVFGGGIHRNNNFQT------------ 1089
Q LP L + + IA G+ +N++
Sbjct: 312 DCRPQDLPREVLTTNPR-----RLSI-----IAESIRDGLATWDNWKHVNCDKLTTIIES 361
Query: 1090 -------------------F------PQAVLVLFRSATGEAW--------QDIMLDCSNR 1116
F P +L L W ++
Sbjct: 362 SLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLI-------WFDVIKSDVMVVVNKLHKY 414
Query: 1117 PSEVKCDAAS----------DGNPTNDDNVSCGSDIAYPYFISFYVLCSFLIINLFVAVI 1166
S V+ + ++ + I + Y + + +
Sbjct: 415 -SLVEKQPKESTISIPSIYLELKVKLENEYALHRSI-----VDHYNIPKTFDSDDLIPPY 468
Query: 1167 MDNFDYLTRDWSILGPHHL---------DEFIRLWSEYD-PDAKGRIKH----------- 1205
+D + Y S +G HHL F ++ ++ + K I+H
Sbjct: 469 LDQYFY-----SHIG-HHLKNIEHPERMTLFRMVFLDFRFLEQK--IRHDSTAWNASGSI 520
Query: 1206 LDVVTLLRKISPPLGFGKLCPHRVACKRLVS--MNMPLNSDGTVLFNATLFAVVRTSLRI 1263
L+ + L+ P +C + +RLV+ ++ L L + ++R +L
Sbjct: 521 LNTLQQLKFYKP-----YICDNDPKYERLVNAILDF-LPKIEENLICSKYTDLLRIALMA 574
Query: 1264 KTEGNIDDANAEL 1276
+ E ++A+ ++
Sbjct: 575 EDEAIFEEAHKQV 587
Score = 53.3 bits (127), Expect = 7e-07
Identities = 97/641 (15%), Positives = 181/641 (28%), Gaps = 238/641 (37%)
Query: 455 WQSLLTVFQQ------EQKGQEESPPRSIMENEEEEEEGSIIEGEEIEDESVR------- 501
++ +L+VF+ + K ++ P +SI+ EE + II ++ ++R
Sbjct: 18 YKDILSVFEDAFVDNFDCKDVQDMP-KSILSKEEIDH---IIMSKDAVSGTLRLFWTLLS 73
Query: 502 EEEDGVKVQLENCDSEFYD-------------------YSYQADIMNNED--------AR 534
++E+ V+ +E Y Y Q D + N++ +R
Sbjct: 74 KQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSR 133
Query: 535 PRRLSEFNTATKK-QPIP-----------------PASSFFIFSATNPFRVWCHWI---- 572
+ + A + +P + F++ W+
Sbjct: 134 LQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKI--FWLNLKN 191
Query: 573 CNHDHFGNAIL----------FLGYFDNFFTAVFTIEILLKIISYGFILHDGAFCRSSFN 622
CN +L + D+ I + + +
Sbjct: 192 CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP--YENC--- 246
Query: 623 LLDLLVVIVSVVAIYWNSAAI-AF---VKILRVLRVLRPLRAINRAKGLKHVVQCVIVAV 678
LL LL V N+ A AF KIL R K V ++
Sbjct: 247 LLVLLNV--------QNAKAWNAFNLSCKIL----------LTTRFKQ---VTD--FLSA 283
Query: 679 KTIGNIVLVTCLLQF-------MFA-VIGVQLFKY---VVKCVIVAIKTIGNIMLVTYLL 727
T +I L + + + + V+ + I
Sbjct: 284 ATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIA--------- 334
Query: 728 SFMFAVMGVQLFKGKFFQCNDGSKMTKAECHGTYLVFSNGKIDEPSIEVREWSKHRFHFD 787
+ L ++ + K+T I E S+ V E +++R FD
Sbjct: 335 ----ESIRDGLATWDNWKHVNCDKLTT--------------IIESSLNVLEPAEYRKMFD 376
Query: 788 DVAKAMLTLF---------TVSTFEGWPGLLYNSIDSNLENHGPIHNY-----RPIVATY 833
L++F +S W ++ + + + +H Y +P +T
Sbjct: 377 R-----LSVFPPSAHIPTILLSLI--WFDVIKSDVMVVVNK---LHKYSLVEKQPKESTI 426
Query: 834 YI--IYIIIIAFFMVNIFVGFVIVTFQNEGEQEYKNCELDKNQRNCIEFALKAKPVRRYI 891
I IY+ EL N E+AL V Y
Sbjct: 427 SIPSIYL------------------------------ELKVKLEN--EYALHRSIVDHY- 453
Query: 892 PKQRLQYKIWWFVTSQYFEYTIFCLIMINTLTLAMKFYRQPLFYADILDKMNMFFTTVFA 951
+ + +Y + I + L + ++M + F VF
Sbjct: 454 -NIPKTFDSDDLIPPYLDQY-FYSHIG----------HH--LKNIEHPERMTL-FRMVF- 497
Query: 952 LEFVF---KLAAFRFKNYFSDAWNVFDFVIVMGSFIDIFSD 989
L+F F K+ + S AWN GS ++
Sbjct: 498 LDFRFLEQKI------RHDSTAWN------ASGSILNTLQQ 526
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein;
3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Length = 223
Score = 59.9 bits (146), Expect = 6e-10
Identities = 18/196 (9%), Positives = 60/196 (30%), Gaps = 27/196 (13%)
Query: 900 IWWFVTSQYFEYTIFCLIMINTLTLAMK-FYRQPLFYADILDKMNMFFTTVFALEFVFKL 958
I + E + +++ + + ++ + Y L +++ + ++ ++
Sbjct: 1 IGDVMEHPLVELGVSYAALLSVIVVVVECTMQLSGEYLVRLYLVDLILVIILWADYAYRA 60
Query: 959 AAFRFKNYFSDAWNVFDFVIVMGSFIDIFSDSPPHAAAKATIPGSHEQTSGRLSINFFRL 1018
+ +++ ++ + + + FRL
Sbjct: 61 YKSGDPAGYV-KKTLYEIPALVPAGLLALI------------------EGHLAGLGLFRL 101
Query: 1019 FRVMRLIKLLSRGEGIRTLLWTFIKSFQALPYVALLIVMLFFIYAVIGMQVFGKIALVFG 1078
R++R +++L L + I AV+ ++G A+
Sbjct: 102 VRLLRFLRILLIISRGSKFLSAIADAADK-------IRFYHLFGAVMLTVLYGAFAIYIV 154
Query: 1079 GGIHRNNNFQTFPQAV 1094
N++ ++ A+
Sbjct: 155 EYPDPNSSIKSVFDAL 170
Score = 54.5 bits (132), Expect = 5e-08
Identities = 20/165 (12%), Positives = 52/165 (31%), Gaps = 29/165 (17%)
Query: 262 FYWLIIILVFLNTGVLATEHYQQPKWLDSFQEVTNIFFVALFTMEMTLKMYSLGFQEVTN 321
+ L+ V+ ++ +++ + V L+ ++
Sbjct: 10 VELGVSYAALLSVIVVV---------VECTMQLSGEYLVRLYLVD--------------- 45
Query: 322 IFFVALFTMEMTLKMYSLGFQGYFVSLFNRFDCFVVIGSIGEMILTRTNIMPPLGVSVLR 381
+ V + + + Y G +V I ++ L G+ + R
Sbjct: 46 LILVIILWADYAYRAYKSGDPAGYV-----KKTLYEIPALVPAGLLALIEGHLAGLGLFR 100
Query: 382 CVRLLRVFKVTKYWRSLSNLVASLLNSIQSIASLLLLLFLFIVIF 426
VRLLR ++ S ++++ ++ I L + + +
Sbjct: 101 LVRLLRFLRILLIISRGSKFLSAIADAADKIRFYHLFGAVMLTVL 145
Score = 46.8 bits (112), Expect = 2e-05
Identities = 16/120 (13%), Positives = 38/120 (31%), Gaps = 13/120 (10%)
Query: 584 FLGYFDNFFTAVFTIEILLKIISYGFILHDGAFCRSSFNLLDLLVVIVSVVAIYWNSAAI 643
L D + + + G + + L ++ ++ + + +
Sbjct: 40 RLYLVDLILVIILWADYAYRAYKSGDPAG---YVKK--TLYEIPALVPAGLLALI-EGHL 93
Query: 644 AFVKILRVLRVLRPLRAINRAKGLKHVVQCVIVAVKTIGNIVLVTCLLQFMFAVIGVQLF 703
A + + R++R+LR LR + + + A I AV+ L+
Sbjct: 94 AGLGLFRLVRLLRFLRILLIISRGSKFLSAIADAADKIR-------FYHLFGAVMLTVLY 146
Score = 35.3 bits (82), Expect = 0.11
Identities = 8/70 (11%), Positives = 20/70 (28%), Gaps = 5/70 (7%)
Query: 2 FEYLILLTIFANCVALAVYTPYPNSDSNSTNAYLENIEYIFLVIFTVECVMKILAYGFVA 61
E + + + + V S L ++ I ++I + +
Sbjct: 10 VELGVSYAALLSVIVVVVECTM--QLSGEYLVRLYLVDLILVIILWADYAYRAYK---SG 64
Query: 62 HPGAYLRNGW 71
P Y++
Sbjct: 65 DPAGYVKKTL 74
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 57.4 bits (138), Expect = 4e-08
Identities = 88/566 (15%), Positives = 154/566 (27%), Gaps = 202/566 (35%)
Query: 177 QQIEEDLRGYLDWITQ--AEDIEPEGEERANHHDQKNKSSSETE--------SADRLEGD 226
Q++E L T+ A D EP ++ E + +E
Sbjct: 31 SQLQEQFNKILPEPTEGFAADDEP---------------TTPAELVGKFLGYVSSLVEPS 75
Query: 227 EGENQESWWRKKNKDFDRNNRRMRRACRKAVKSQGFYWLIIILVFLNTG----VLATEHY 282
+ + +F+ +L + A
Sbjct: 76 KVGQFDQVLNLCLTEFENC-------------------------YLEGNDIHALAAKLLQ 110
Query: 283 QQPKWLDSFQEVTNIFFVALFTMEMTLKMYSLGFQEVTNIFFVALFT--MEMTLKMYSL- 339
+ L +E+ + A + + ALF E ++ ++
Sbjct: 111 ENDTTLVKTKELIKNYITARIMAK----------RPFDKKSNSALFRAVGEGNAQLVAIF 160
Query: 340 GFQG----YF---VSLFNRFDCFVVIGSIGEMILTRTNIMPPLGVSVLRCVRLL-RVFKV 391
G QG YF L+ + V G++I + L + L ++ + +
Sbjct: 161 GGQGNTDDYFEELRDLYQTYHVLV-----GDLIKFSAETLSELIRTTLDAEKVFTQGLNI 215
Query: 392 TKYWRSLSNLVA----SLLNSIQSIASLLLLLFLFIVIFALLGMQVFGGKFNFNPT---- 443
+ W L N L SI S L I + L V F P
Sbjct: 216 LE-W--LENPSNTPDKDYLLSIP--ISCPL-----IGVIQLAHYVVTAKLLGFTPGELRS 265
Query: 444 -----------------IAKPRSNFDSFWQSLLTV----FQ-----QEQKGQEESPPRSI 477
IA+ S ++SF+ S+ F E PP SI
Sbjct: 266 YLKGATGHSQGLVTAVAIAETDS-WESFFVSVRKAITVLFFIGVRCYEAYPNTSLPP-SI 323
Query: 478 MENEEEEEEGS-----IIEG---EEIEDESVRE------EEDGVKVQLENCDSEF----Y 519
+E+ E EG I E+++D V + V++ L N
Sbjct: 324 LEDSLENNEGVPSPMLSISNLTQEQVQDY-VNKTNSHLPAGKQVEISLVNGAKNLVVSGP 382
Query: 520 DYSYQADIMNNEDARPRRLSEFNTATKKQPIPPA---------------SSFF--IFSAT 562
P+ L N +K P S+ F + S
Sbjct: 383 ---------------PQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVAS-- 425
Query: 563 NPFRVWCHWICNHDHFGNAILFLGYFDNFFTAVFTIEIL-----LKIISYGFILHDGA-F 616
PF H H L + D + + ++I Y DG+
Sbjct: 426 -PF---------HSH-----LLVPASDLINKDLVKNNVSFNAKDIQIPVYDT--FDGSDL 468
Query: 617 CRSSFNLLDLLVVIVSVVAIYWNSAA 642
S ++ + +V + + + W +
Sbjct: 469 RVLSGSISERIVDCIIRLPVKWETTT 494
Score = 57.0 bits (137), Expect = 5e-08
Identities = 53/390 (13%), Positives = 111/390 (28%), Gaps = 141/390 (36%)
Query: 439 NFNPTIAKPRSNF-------DSFWQSLLTVFQQEQKGQEESPPRSIMENEEEEEEGSIIE 491
+ + P ++F + F + L P ++E + E
Sbjct: 15 SLEHVLLVPTASFFIASQLQEQFNKIL---------------PEPTEGFAADDEPTTPAE 59
Query: 492 ---------GEEIEDESVREEEDGVKVQLENCDSEFYD----YSYQADIMNNEDARPRRL 538
+E V + + + + L ++ + + ++ A ++ D +
Sbjct: 60 LVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKT 119
Query: 539 SE-----FNT-ATKKQPIPPASSFFIFSATNPFRVWCHWICNHDHFGNAILFL-----GY 587
E K+P S+ +F A GNA L G
Sbjct: 120 KELIKNYITARIMAKRPFDKKSNSALFRAVGE--------------GNAQLVAIFGGQGN 165
Query: 588 FDNFFTAVFTIEILLKII--SYGFILHDGAFCRSSFNLL-DLLVVIVSVVAIY------- 637
D++F E L+ + +Y ++ D + S L +L+ + ++
Sbjct: 166 TDDYFE-----E--LRDLYQTYHVLVGD--LIKFSAETLSELIRTTLDAEKVFTQGLNIL 216
Query: 638 -W-------------NSAAIAFVKI--------LRVLRVL--RPLRAINRAKGLKHVVQC 673
W S I+ I + ++L P + KG Q
Sbjct: 217 EWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQG 276
Query: 674 VIVAV-----KT----IGNIVLVTCLLQFMFAVIGVQLFKYVVKCVIVAIKTIGNIMLVT 724
++ AV + ++ + +F IGV+ + N L
Sbjct: 277 LVTAVAIAETDSWESFFVSVRKA---ITVLFF-IGVR-----------CYEAYPNTSLPP 321
Query: 725 YLL-----------SFMFAVMGV---QLFK 740
+L S M ++ + Q+
Sbjct: 322 SILEDSLENNEGVPSPMLSISNLTQEQVQD 351
Score = 52.0 bits (124), Expect = 2e-06
Identities = 90/532 (16%), Positives = 157/532 (29%), Gaps = 184/532 (34%)
Query: 958 LAAFRFKNYFSD-----AWNVFDFVI--VMGSFIDIF-SDSPPHAAAKATIPGSHEQTSG 1009
L +F Y S FD V+ + F + + + HA A A + ++ T
Sbjct: 60 LVG-KFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALA-AKLLQENDTT-- 115
Query: 1010 RLSINFFRLFRVMRLIK--LLSRGEGIRTLLWTFIKSFQALPYVALLIVMLFFIYAVIGM 1067
L + LIK + +R R F AL AV
Sbjct: 116 --------LVKTKELIKNYITARIMAKR--------PFDKKSNSALF-------RAVGEG 152
Query: 1068 QVFGKIALVFGG-GIHRNNN---------FQTFPQAVLVLFRSATGEAWQDIMLDCSNRP 1117
++ +FGG G N + +QT+ V L + + + + +
Sbjct: 153 NA--QLVAIFGGQG---NTDDYFEELRDLYQTYHVLVGDLIKFSA-----ETLSELIRTT 202
Query: 1118 SEVK------CDAAS---DGNPTNDDNVSCGSDIAYPYFISFYVLCSFLII--------- 1159
+ + + + + T D + I+ P I L +++
Sbjct: 203 LDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCP-LIGVIQLAHYVVTAKLLGFTPG 261
Query: 1160 --------------NLFVAVIMDNFDYLTRDWSILGPHHLDEFIRL---------W---- 1192
L AV + T W + F +
Sbjct: 262 ELRSYLKGATGHSQGLVTAVAIA----ETDSW--------ESFFVSVRKAITVLFFIGVR 309
Query: 1193 -SEYDPDAKGRIKHLDVVTLLRKISPPLGFGKLCP-------HRVACKRLVS-MNMPLNS 1243
E P + + + + S G P + + V+ N L +
Sbjct: 310 CYEAYP-------NTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPA 362
Query: 1244 DGTV---LFNATLFAVV---RTSLRIKTEGNIDDANAELRAVIKKIWKRTSNELLNQ--V 1295
V L N VV SL N LR K S L+Q +
Sbjct: 363 GKQVEISLVNGAKNLVVSGPPQSLY--------GLNLTLRKA-----KAPSG--LDQSRI 407
Query: 1296 VPPPGGEEEVTVGKFYATFL-IQ-----DYFRRFKKRKEQELKDGDKESHNTVTLQAG-L 1348
P E ++ KF FL + ++L + V+ A +
Sbjct: 408 ---PFSERKL---KFSNRFLPVASPFHSHLLVPASDLINKDLVKNN------VSFNAKDI 455
Query: 1349 R-TLHDA--GPELKRAISGNL-EELVDD---NP---EPSHRVSPTNSVDYLP 1390
+ ++D G +L R +SG++ E +VD P E + + T+ +D+ P
Sbjct: 456 QIPVYDTFDGSDL-RVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGP 506
Score = 48.1 bits (114), Expect = 3e-05
Identities = 67/397 (16%), Positives = 111/397 (27%), Gaps = 151/397 (38%)
Query: 1335 DKESHNTVTLQAG-LRT-------LHDAGPELKRAISGNL----EELVDDNPEPSHRVSP 1382
D S +TL G L +L+ + L E D+ EP+ +P
Sbjct: 2 DAYSTRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADD-EPT---TP 57
Query: 1383 TNSV-DYLPYTSIQLNGMNDSSKMNNIINLFVAVIMDNF--DYL-TRDWSILGPHHLDEF 1438
V +L Y S + + + + ++NL + F YL D I H
Sbjct: 58 AELVGKFLGYVSSLVEP-SKVGQFDQVLNL----CLTEFENCYLEGND--I----HA--- 103
Query: 1439 IRLWSEYDPDAKGRI-KHLDVV--------TLLRKISPPLGFGKLCPHRVACEEEVTVG- 1488
L ++ + + K +++ R A V G
Sbjct: 104 --LAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKK--------SNSALFRAVGEGN 153
Query: 1489 -KFYATF----LIQDYFRRFKKRKEQELKDGDKESHNTVTLQAGLRTLHDAGP----ELK 1539
+ A F DYF +E LR L+ +L
Sbjct: 154 AQLVAIFGGQGNTDDYF---------------EE----------LRDLYQTYHVLVGDLI 188
Query: 1540 RAISGNLEELVD-------------------DNPE--PSHRVLAEY-------GLGKFA- 1570
+ + L EL+ +NP P L G+ + A
Sbjct: 189 KFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAH 248
Query: 1571 Y---PELVKYTSKEMQE------------------ALNMTQEEMDRAAHKLI-----IQE 1604
Y +L+ +T E++ A + E + K I I
Sbjct: 249 YVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGV 308
Query: 1605 R-HNQFQDTLQVSPTNSVDYLPYTSIQLNGMNDSSKM 1640
R + + +T + P+ D L N S M
Sbjct: 309 RCYEAYPNT-SLPPSILEDSLE------NNEGVPSPM 338
Score = 44.7 bits (105), Expect = 3e-04
Identities = 91/555 (16%), Positives = 161/555 (29%), Gaps = 206/555 (37%)
Query: 1154 CSFLI-INLFVA--VIMDNFDYLTRDWSILGPHHLDEF---------IRLWSEY------ 1195
L+ F + + F+ IL P + F L ++
Sbjct: 18 HVLLVPTASFFIASQLQEQFN------KIL-PEPTEGFAADDEPTTPAELVGKFLGYVSS 70
Query: 1196 --DPDAKGRIKHLDVVTLL-----RKISPPLGFGKLCPHRVACKRLVSMNMPLNSDGTVL 1248
+P G+ V+ L L + H +A K L + L ++
Sbjct: 71 LVEPSKVGQ--FDQVLNLCLTEFENCY---LEGNDI--HALAAKLLQENDTTLVKTKELI 123
Query: 1249 ---FNAT--------------LF-AVVRTSLRIKTE----GNIDDANAELRAVIKKIWK- 1285
A LF AV + ++ GN DD ELR +++
Sbjct: 124 KNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELR----DLYQT 179
Query: 1286 ---------RTSNELLNQVVPPPGGEEEVTVGKFYATFLIQDYFRRFKKRKEQELKDGDK 1336
+ S E L++++ E+V F I ++ D D
Sbjct: 180 YHVLVGDLIKFSAETLSELIRTTLDAEKV----FTQGLNILEWLE-----NPSNTPDKDY 230
Query: 1337 ESHNTVTL------QAG--LRTLHDAG--P-ELK---RAISGNLEELV--------DDNP 1374
++ Q + T G P EL+ + +G+ + LV D
Sbjct: 231 LLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWE 290
Query: 1375 E-----------------PSHRVSPTNSVDYLPYTSIQL---NGMNDSSKMNNIINLFVA 1414
+ P S LP + ++ N S M +I NL
Sbjct: 291 SFFVSVRKAITVLFFIGVRCYEAYPNTS---LPPSILEDSLENNEGVPSPMLSISNL--- 344
Query: 1415 VIMDNFDYLTRDWSILGPHHLDEFIRLWSEYDPDAK--------GRIKHLDVVT-----L 1461
T++ + +++ + + P K G K+L VV+ L
Sbjct: 345 ---------TQE-------QVQDYVNKTNSHLPAGKQVEISLVNGA-KNL-VVSGPPQSL 386
Query: 1462 ------LRKISPPLGFGKLCPHRV-ACEEEVTVGKFYATFL-IQ-----DYFRRFKKRKE 1508
LRK P G + R+ E ++ KF FL +
Sbjct: 387 YGLNLTLRKAKAPSGLDQ---SRIPFSERKL---KFSNRFLPVASPFHSHLLVPASDLIN 440
Query: 1509 QELKDGDKES---------HNTVTLQAG--LRTLHDA-GPELKRAISGNLEELVD----D 1552
++L + ++T G LR L + + I + V
Sbjct: 441 KDLVKNNVSFNAKDIQIPVYDTFD---GSDLRVLSGSISERIVDCI---IRLPVKWETTT 494
Query: 1553 NPEPSHRVLAEYGLG 1567
+ +H +L ++G G
Sbjct: 495 QFKATH-IL-DFGPG 507
Score = 42.0 bits (98), Expect = 0.002
Identities = 103/602 (17%), Positives = 170/602 (28%), Gaps = 225/602 (37%)
Query: 753 TKAECHGTYLVFSNGKIDEPSIEVREWSKHRFHFDDVAKAMLTLFTVSTFEGWPGLLYNS 812
T AE G +L + + ++ + FD V LT F + + L N
Sbjct: 56 TPAELVGKFLGYVSSLVEPSKVG---------QFDQVLNLCLTEFE-NCY-----LEGND 100
Query: 813 IDS---NL--ENHGPIHNYRPIVATYYIIYIIIIAFFMVNIFVGFVIVTFQNEGEQEYKN 867
I + L EN + + ++ Y A M
Sbjct: 101 IHALAAKLLQENDTTLVKTKELIKNYIT------ARIMAKR------------------- 135
Query: 868 CELDKNQRNCIEFAL-KAKPVRRYIPKQRLQYKIWWF----VTSQYFE-----YTI---- 913
DK + AL +A V +L I F T YFE Y
Sbjct: 136 -PFDKKSNS----ALFRA--VGE--GNAQL-VAI--FGGQGNTDDYFEELRDLYQTYHVL 183
Query: 914 ---FCLIMINTL-TLAMKFYRQPLFYADILDKMN-----------MFFTTV---FALEFV 955
TL L + L+ + + ++ L V
Sbjct: 184 VGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGV 243
Query: 956 FKLAAFRFKNYFSDAWNVFDFVIVMGSFIDIFSDSPPH------AAAKATIPGSHEQTSG 1009
+LA +Y A + F G + H A A A S E
Sbjct: 244 IQLA-----HYVVTA-KLLGFT--PGELRSYLKGATGHSQGLVTAVAIAE-TDSWE---- 290
Query: 1010 RLSINFFRLFRVMRLIKLLSRGEGIRTLLWTFIKSFQALPYVAL--LIV----------- 1056
+FF R + I L + ++ ++A P +L I+
Sbjct: 291 ----SFFVSVR-----------KAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVP 335
Query: 1057 --MLFFIYAVIGM---QVFGKIALVFGGGIHRNNNFQTFPQAVLVLFRSA-----TGEAW 1106
ML ++ + QV + N++ Q + L A +G
Sbjct: 336 SPML----SISNLTQEQVQDYVNKT-------NSHLPAGKQVEISLVNGAKNLVVSGPP- 383
Query: 1107 QDIM-LDCSNRPSEVKCDAASDGN--PTNDDNVSCGSD---IAYPYFISFY--------- 1151
Q + L+ + R + K + D + P ++ + + +A P+ S
Sbjct: 384 QSLYGLNLTLR--KAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFH-SHLLVPASDLIN 440
Query: 1152 --VLCSFLIIN---LFVAVIMDNFDYLTRDWS-------ILGPHHLDEFIRL---WSEYD 1196
++ + + N + + V Y T D S + +D IRL W
Sbjct: 441 KDLVKNNVSFNAKDIQIPV------YDTFDGSDLRVLSGSISERIVDCIIRLPVKW---- 490
Query: 1197 PDA-KGRIKH-LDVVTLLRKISPPLGFGKLCPHRVACKRLVSMNMPLNSDGT---VLFNA 1251
+ + H LD FG + L N DGT V+
Sbjct: 491 ETTTQFKATHILD-------------FGPGGASGLG--VLTHRNK----DGTGVRVIVAG 531
Query: 1252 TL 1253
TL
Sbjct: 532 TL 533
Score = 35.4 bits (81), Expect = 0.21
Identities = 72/447 (16%), Positives = 126/447 (28%), Gaps = 169/447 (37%)
Query: 1294 QVVPPP-----GGEEEVTVGKFYATFLIQDYFRRFKKRKEQELKDGDKESHNTVTLQAGL 1348
+++P P +E T + FL Y ++ + V L L
Sbjct: 39 KILPEPTEGFAADDEPTTPAELVGKFL--GYV-------SSLVEPSKVGQFDQV-LNLCL 88
Query: 1349 RTLHDA---GPELKRAISGNLEELVDDNPEPSHRVSPTNSVDYLPYTSIQLNGMNDSSKM 1405
+ G ++ A++ L + D + + Y T+ + K
Sbjct: 89 TEFENCYLEGNDI-HALAAKLLQENDTTLVKTKELIKN----Y--ITARIMAKRPFDKKS 141
Query: 1406 NNIINLFVAVIMDNFDYLTRDWSILG-----PHHLDEFIRLWSEYDP------------- 1447
N+ LF AV N + +I G + +E L+ Y
Sbjct: 142 NSA--LFRAVGEGN----AQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETL 195
Query: 1448 --------DAKGRIKH-LDVVTLLRK--------------ISPPL-GFGKLCPHRVACE- 1482
DA+ L+++ L IS PL G +L + V +
Sbjct: 196 SELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKL 255
Query: 1483 -----EEV--------TVGK----------------FYAT--------FLI----QDYFR 1501
E+ + F+ + F I + +
Sbjct: 256 LGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYP 315
Query: 1502 RFK---KRKEQELKDGDKE-SH-------NTVTLQAGLRTLHDAGPELKR-AISGNLEEL 1549
E L++ + S +Q + + P K+ IS L
Sbjct: 316 NTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEIS-----L 370
Query: 1550 VDDNPEPSHRVLAEYGLGKFAYPE-LVKYTSKEMQEALNMTQEEMDRAAHKLIIQER--- 1605
V N + V++ G P+ L LN+T + +A L Q R
Sbjct: 371 V--N-GAKNLVVS--G-----PPQSL---------YGLNLTLRKA-KAPSGL-DQSRIPF 409
Query: 1606 -------HNQFQDTLQVS-PTNSVDYL 1624
N+F L V+ P +S L
Sbjct: 410 SERKLKFSNRF---LPVASPFHS-HLL 432
Score = 33.9 bits (77), Expect = 0.61
Identities = 25/113 (22%), Positives = 38/113 (33%), Gaps = 24/113 (21%)
Query: 1488 GK-FYATF-LIQDYFRRFKKRKEQELKDG----DKESHNTVTLQAGLRTLHDAGPELKRA 1541
G Y T QD + R + G D +N V L T+H G + KR
Sbjct: 1632 GMDLYKTSKAAQDVWNRADNHFKDTY--GFSILDIVINNPVNL-----TIHFGGEKGKR- 1683
Query: 1542 ISGNLEELV----DDNPEPSHRVLAEYGLGKFAYPELVKYTSKEMQEALNMTQ 1590
I N ++ D + ++ E YT + + L+ TQ
Sbjct: 1684 IRENYSAMIFETIVDGKLKTEKIFKEIN------EHSTSYTFRSEKGLLSATQ 1730
Score = 32.7 bits (74), Expect = 1.2
Identities = 19/85 (22%), Positives = 29/85 (34%), Gaps = 46/85 (54%)
Query: 275 GVL-ATEHYQQPKWLDSFQEVTNIFFVALFTMEM----TLK---------MY---SLGFQ 317
G+L AT+ + QP AL ME LK + SLG
Sbjct: 1724 GLLSATQ-FTQP---------------ALTLMEKAAFEDLKSKGLIPADATFAGHSLG-- 1765
Query: 318 EVTNIFFVAL------FTMEMTLKM 336
E + AL ++E +++
Sbjct: 1766 E-----YAALASLADVMSIESLVEV 1785
Score = 31.2 bits (70), Expect = 3.7
Identities = 28/215 (13%), Positives = 56/215 (26%), Gaps = 80/215 (37%)
Query: 926 MKFYRQPLFYADILDKMNMFFTTVFALEFVFKLAAFRFKNYFSDAWNVFDFVIVMGSFID 985
M Y+ D+ ++ + F + + F I +D
Sbjct: 1633 MDLYKTSKAAQDVWNRADNHFK------------------------DTYGFSI-----LD 1663
Query: 986 IFSDSPPHAAAKATIPGSHEQTSGRLSINFFRL-FRVMRLIKLLSR------GEGIRTLL 1038
I ++P + R+ N+ + F + KL + E +
Sbjct: 1664 IVINNPVNLTIHFGGEKGK-----RIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYT 1718
Query: 1039 WT------FIKSF-QALPYVALLIV-MLFFIYAVI---GMQVFGKI----------ALV- 1076
+ F Q P AL ++ + + G+ AL
Sbjct: 1719 FRSEKGLLSATQFTQ--P--ALTLMEKA--AFEDLKSKGLIPADATFAGHSLGEYAALAS 1772
Query: 1077 FGGGIHRNNNFQTFPQAV-LVLFRSATGEAWQDIM 1110
+ + V +V +R G Q +
Sbjct: 1773 LADVM-------SIESLVEVVFYR---GMTMQVAV 1797
>2f3y_B Voltage-dependent L-type calcium channel alpha- 1C subunit;
calmodulin, calmodulin complex, calcium channnel, CAV1.2,
IQ domain; 1.45A {Homo sapiens} PDB: 2f3z_B 2vay_B
Length = 26
Score = 49.3 bits (117), Expect = 6e-08
Identities = 19/21 (90%), Positives = 21/21 (100%)
Query: 1309 KFYATFLIQDYFRRFKKRKEQ 1329
KFYATFLIQ+YFR+FKKRKEQ
Sbjct: 1 KFYATFLIQEYFRKFKKRKEQ 21
Score = 49.3 bits (117), Expect = 6e-08
Identities = 19/21 (90%), Positives = 21/21 (100%)
Query: 1489 KFYATFLIQDYFRRFKKRKEQ 1509
KFYATFLIQ+YFR+FKKRKEQ
Sbjct: 1 KFYATFLIQEYFRKFKKRKEQ 21
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 45.9 bits (108), Expect = 2e-05
Identities = 16/70 (22%), Positives = 32/70 (45%), Gaps = 9/70 (12%)
Query: 190 ITQAEDI--EPEG-----EERANHHDQKNKSSSETESADRLEGDEGENQESWWRKKNKDF 242
I QA+ + EPE EE+ + + +S E R + + + E W +++++
Sbjct: 74 IAQADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKK--DLEEWNQRQSEQV 131
Query: 243 DRNNRRMRRA 252
++N R A
Sbjct: 132 EKNKINNRIA 141
Score = 42.1 bits (98), Expect = 4e-04
Identities = 15/72 (20%), Positives = 32/72 (44%), Gaps = 9/72 (12%)
Query: 159 KEREKAKARGDFHKLREKQQIEEDLRGYLDWITQAE-DIEPEGEERANHHDQKNKSSSET 217
K RE+ + R L+E + + +W +A+ D+E E +R + +KNK ++
Sbjct: 89 KWREEQRKR-----LQELDAASKVME--QEWREKAKKDLE-EWNQRQSEQVEKNKINNRI 140
Query: 218 ESADRLEGDEGE 229
+ + +
Sbjct: 141 ADKAFYQQPDAD 152
Score = 37.1 bits (85), Expect = 0.025
Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 11/67 (16%)
Query: 463 QQE----QKGQEESPPRSIMENEEEEE--EGSIIEG--EEIEDESVREEEDGVKVQLEN- 513
QE +K +EE R + E + + E E +++E+ + R+ E K ++ N
Sbjct: 81 TQEPESIRKWREEQRKR-LQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNR 139
Query: 514 -CDSEFY 519
D FY
Sbjct: 140 IADKAFY 146
Score = 30.1 bits (67), Expect = 4.2
Identities = 15/84 (17%), Positives = 31/84 (36%), Gaps = 27/84 (32%)
Query: 1437 EFIRLWSEYDPDAKGRIKHLDVVTLLRKISPPLGFGKLCPHRVACEEEVTVGKFYATFLI 1496
E IR W E + + R++ LD + +V +E K +
Sbjct: 85 ESIRKWRE---EQRKRLQELDAAS-----------------KVMEQEWREKAKKD----L 120
Query: 1497 QDYFRRFKKRKEQ---ELKDGDKE 1517
+++ +R ++ E+ + DK
Sbjct: 121 EEWNQRQSEQVEKNKINNRIADKA 144
>2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane protein;
NMR {Aeropyrum pernix}
Length = 147
Score = 37.6 bits (87), Expect = 0.009
Identities = 14/152 (9%), Positives = 44/152 (28%), Gaps = 28/152 (18%)
Query: 899 KIWWFVTSQYFEYTIFCLIMINT-LTLAMKFYRQPLFYADILDKMNMFFTTVFALEFVFK 957
I + E + +++ + + + Y L +++ + ++ ++
Sbjct: 13 NIGDVMEHPLVELGVSYAALLSVIVVVVEYTMQLSGEYLVRLYLVDLILVIILWADYAYR 72
Query: 958 LAAFRFKNYFSDAWNVFDFVIVMGSFIDIFSDSPPHAAAKATIPGSHEQTSGRLS--INF 1015
+ +++ A +P +
Sbjct: 73 AYKSGDPAGYV-KKTLYEIP--------------------ALVPAGLLALIEGHLAGLGL 111
Query: 1016 FRLFRVMRLIKLLSRGEGIRTLLWTFIKSFQA 1047
FRL R++R +++L I + F+ +
Sbjct: 112 FRLVRLLRFLRIL----LIISRGSKFLSAIAD 139
Score = 34.9 bits (80), Expect = 0.064
Identities = 13/97 (13%), Positives = 32/97 (32%), Gaps = 6/97 (6%)
Query: 585 LGYFDNFFTAVFTIEILLKIISYGFILHDGAFCRSSFNLLDLLVVIVSVVAIYWNSAAIA 644
L D + + + G + + L ++ +V + +A
Sbjct: 54 LYLVDLILVIILWADYAYRAYKSG---DPAGYVKK--TLYEIPA-LVPAGLLALIEGHLA 107
Query: 645 FVKILRVLRVLRPLRAINRAKGLKHVVQCVIVAVKTI 681
+ + R++R+LR LR + + + A +
Sbjct: 108 GLGLFRLVRLLRFLRILLIISRGSKFLSAIADAADKL 144
Score = 31.5 bits (71), Expect = 1.2
Identities = 16/116 (13%), Positives = 47/116 (40%), Gaps = 7/116 (6%)
Query: 297 IFFVALFTMEMTLKMYSLGFQEVTNIFFVALFTMEMTLKMYSLGFQGYFVSLFNRFDCFV 356
I V +TM+++ + + + ++ V + + + Y G +V ++
Sbjct: 36 IVVVVEYTMQLSGEYLVRLY--LVDLILVIILWADYAYRAYKSGDPAGYV-KKTLYEIPA 92
Query: 357 VIGSIGEMILTRTNIMPPLGVSVLRCVRLLRVFKVTKYWRSLSNLVASLLNSIQSI 412
++ + ++ G+ + R VRLLR ++ S ++++ ++ +
Sbjct: 93 LVPAGLLALIEGHL----AGLGLFRLVRLLRFLRILLIISRGSKFLSAIADAADKL 144
>2lcm_A Voltage-dependent N-type calcium channel subunit; voltage sensor
peptide, membrane protein; NMR {Homo sapiens}
Length = 28
Score = 33.9 bits (77), Expect = 0.016
Identities = 16/26 (61%), Positives = 18/26 (69%)
Query: 643 IAFVKILRVLRVLRPLRAINRAKGLK 668
I +K LRVLRVLRPL+ I R LK
Sbjct: 3 INTIKSLRVLRVLRPLKTIKRLPKLK 28
>1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB
complex, membrane protein; 1.90A {Aeropyrum pernix} SCOP:
f.14.1.1
Length = 132
Score = 35.7 bits (82), Expect = 0.037
Identities = 13/140 (9%), Positives = 42/140 (30%), Gaps = 24/140 (17%)
Query: 908 YFEYTIFCLIMINTLTLAMKFYRQ-PLFYADILDKMNMFFTTVFALEFVFKLAAFRFKNY 966
E + +++ + + +++ Q Y L +++ + ++ ++
Sbjct: 7 LVELGVSYAALLSVIVVVVEYTMQLSGEYLVRLYLVDLILVIILWADYAYRAYKSGDPAG 66
Query: 967 FSDAWNVFDFVIVMGSFIDIFSDSPPHAAAKATIPGSHEQTSGRLS--INFFRLFRVMRL 1024
+ +++ A +P + FRL R++R
Sbjct: 67 YV-KKTLYEIP--------------------ALVPAGLLALIEGHLAGLGLFRLVRLLRF 105
Query: 1025 IKLLSRGEGIRTLLWTFIKS 1044
+++L L +
Sbjct: 106 LRILLIISRGSKFLSAIADA 125
Score = 31.8 bits (72), Expect = 0.64
Identities = 14/107 (13%), Positives = 35/107 (32%), Gaps = 14/107 (13%)
Query: 579 GNAILFLGYFDNFFTAVFTIEILLKIIS----YGFILHDGAFCRSSFNLLDLLVVIVSVV 634
G ++ L D + + + G++ L ++ +V
Sbjct: 33 GEYLVRLYLVDLILVIILWADYAYRAYKSGDPAGYVKK---------TLYEIPA-LVPAG 82
Query: 635 AIYWNSAAIAFVKILRVLRVLRPLRAINRAKGLKHVVQCVIVAVKTI 681
+ +A + + R++R+LR LR + + + A +
Sbjct: 83 LLALIEGHLAGLGLFRLVRLLRFLRILLIISRGSKFLSAIADAADKL 129
Score = 29.9 bits (67), Expect = 3.2
Identities = 16/116 (13%), Positives = 47/116 (40%), Gaps = 7/116 (6%)
Query: 297 IFFVALFTMEMTLKMYSLGFQEVTNIFFVALFTMEMTLKMYSLGFQGYFVSLFNRFDCFV 356
I V +TM+++ + + + ++ V + + + Y G +V ++
Sbjct: 21 IVVVVEYTMQLSGEYLVRLY--LVDLILVIILWADYAYRAYKSGDPAGYV-KKTLYEIPA 77
Query: 357 VIGSIGEMILTRTNIMPPLGVSVLRCVRLLRVFKVTKYWRSLSNLVASLLNSIQSI 412
++ + ++ G+ + R VRLLR ++ S ++++ ++ +
Sbjct: 78 LVPAGLLALIEGHL----AGLGLFRLVRLLRFLRILLIISRGSKFLSAIADAADKL 129
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.5 bits (78), Expect = 0.11
Identities = 8/27 (29%), Positives = 12/27 (44%), Gaps = 9/27 (33%)
Query: 175 EKQQI---EEDLRGYLDWITQAEDIEP 198
EKQ + + L+ Y A+D P
Sbjct: 18 EKQALKKLQASLKLY------ADDSAP 38
Score = 33.0 bits (74), Expect = 0.38
Identities = 13/44 (29%), Positives = 14/44 (31%), Gaps = 21/44 (47%)
Query: 957 KLAAFRFKNYFSDAWNVFDFVIVMGSFIDIFSDSPPHAAAKATI 1000
KL A K Y A DS P A KAT+
Sbjct: 24 KLQA-SLKLY---A-----------------DDSAPALAIKATM 46
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus,
phosphoprotein, PR proteasome, threonine protease; 3.00A
{Saccharomyces cerevisiae} PDB: 3l5q_6
Length = 997
Score = 34.7 bits (79), Expect = 0.32
Identities = 15/107 (14%), Positives = 32/107 (29%), Gaps = 5/107 (4%)
Query: 1482 EEEVTVGKFYATFLIQDYFRRFKKRKEQELKDGDKESHNTVTLQAGL-RTLHDA-GPELK 1539
E E+ V K L +++ R Q+ + S V+ + + +
Sbjct: 447 ENELEVLKTAGHLLTREFLRDVTMNLVQDNETRGVFSSGNVSFFSLVILLISSGFCELNM 506
Query: 1540 RAISGNLEELVDDNPEPSHRVLAEYGLGKFAYPELVKYTSKEMQEAL 1586
+ E + + + S + E G K+ S +
Sbjct: 507 SDLFELCESYYNKDDKASMIMSVEIVAGLVCG---SKFMSVSDLDKR 550
Score = 31.7 bits (71), Expect = 2.7
Identities = 14/101 (13%), Positives = 32/101 (31%), Gaps = 2/101 (1%)
Query: 1283 IWKRTSNELLNQVVPPPGGEEEVTVGKFYATFLIQDYFRRFKKRKEQELKDGDKESHNTV 1342
W R + + + E E+ V K L +++ R Q+ + S V
Sbjct: 428 CWGRLMYVMSPKALKLNLRENELEVLKTAGHLLTREFLRDVTMNLVQDNETRGVFSSGNV 487
Query: 1343 TLQAGL-RTLHDA-GPELKRAISGNLEELVDDNPEPSHRVS 1381
+ + + + + E + + + S +S
Sbjct: 488 SFFSLVILLISSGFCELNMSDLFELCESYYNKDDKASMIMS 528
>4f61_I Stathmin-like domain R4; alpha-tubulin, beta-tubulin, GTPase,
microtubule, RB3, stath tubulin, cell cycle; HET: GTP
GDP; 4.17A {Artificial gene}
Length = 240
Score = 33.8 bits (76), Expect = 0.35
Identities = 21/100 (21%), Positives = 43/100 (43%), Gaps = 3/100 (3%)
Query: 156 EFSKEREKAKARGDFHKLREKQQIEEDLRGYLDWITQAEDIEPEGEERANHHDQKNKSSS 215
E +KE +A +L+EK + E++R I + + +E+ + NK +
Sbjct: 103 ESNKENREAHFAAMLERLQEKDKHAEEVR--QRAIEENNNWIKMAKEKLAQKMESNKENR 160
Query: 216 ETESADRLEGDEGENQESWWRKKNKDFDRNNRRMRRACRK 255
+ + A+ L+ E +E + + NN ++ A K
Sbjct: 161 KYQEAELLK-HLAEKREHEREVIQRAIEENNNWIKMAKEK 199
>3cx5_F Cytochrome B-C1 complex subunit 6; complex III, electron transfer
complex, cytochrome BC1 complex,
mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ
HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces
cerevisiae} SCOP: f.28.1.1 PDB: 3cxh_F* 1ezv_H* 1kb9_F*
1p84_F* 2ibz_H* 1kyo_F*
Length = 146
Score = 31.8 bits (71), Expect = 0.86
Identities = 10/52 (19%), Positives = 26/52 (50%)
Query: 463 QQEQKGQEESPPRSIMENEEEEEEGSIIEGEEIEDESVREEEDGVKVQLENC 514
+++ EE + E+E+E+E+ + ++ ++E E D ++ E+
Sbjct: 33 EEKAAEGEEKEEENGDEDEDEDEDEDDDDDDDEDEEEEEEVTDQLEDLREHF 84
>3dvk_B Voltage-dependent R-type calcium channel subunit; calmodulin, IQ
domain, inactivation, facili calcium-dependent,
voltage-gated; 2.30A {Rattus norvegicus} PDB: 3dvm_B
Length = 26
Score = 28.9 bits (64), Expect = 0.88
Identities = 9/21 (42%), Positives = 15/21 (71%)
Query: 1307 VGKFYATFLIQDYFRRFKKRK 1327
+GK YA +I DY+++ K +K
Sbjct: 3 MGKIYAAMMIMDYYKQSKVKK 23
Score = 28.9 bits (64), Expect = 0.88
Identities = 9/21 (42%), Positives = 15/21 (71%)
Query: 1487 VGKFYATFLIQDYFRRFKKRK 1507
+GK YA +I DY+++ K +K
Sbjct: 3 MGKIYAAMMIMDYYKQSKVKK 23
>1qg9_A Protein (sodium channel protein, brain II alpha subunit);
transmembrane sodium channel, structure, transmembrane
channel; NMR {Synthetic} SCOP: j.35.1.1
Length = 26
Score = 28.1 bits (62), Expect = 1.8
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 37 NIEYIFLVIFTVECVMKILA 56
N+EY F I+T E ++KILA
Sbjct: 1 NVEYTFTGIYTFESLIKILA 20
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA,
structure, membrane protein, metal transport; HET: PCA;
NMR {Streptomyces lividans} SCOP: f.14.1.1
Length = 155
Score = 30.6 bits (69), Expect = 2.3
Identities = 13/83 (15%), Positives = 29/83 (34%), Gaps = 12/83 (14%)
Query: 379 VLRCVRLLRVFKVTKYWRSLSNLVASLLNSIQSIASLLLLLFLFIVIFALLGMQVFGGKF 438
+ L R+ K+ L ++L ++ + +LL + ++ + L +
Sbjct: 26 PMLSGLLARLVKLL-----LGRHGSAL--HWRAAGAATVLLVIVLLAGSYL---AVLAER 75
Query: 439 NFNPTIAKPRSNFDSFWQSLLTV 461
S D+ W S+ T
Sbjct: 76 GAPGA--ALISYPDALWWSVETA 96
Score = 29.4 bits (66), Expect = 5.4
Identities = 16/93 (17%), Positives = 30/93 (32%), Gaps = 22/93 (23%)
Query: 1006 QTSGRL--SINFFRLFRVMRLIK-LLSR-GEGIRTLLWTFIKSFQALPYVALLIVMLFFI 1061
+ GRL + + RL+K LL R G + +A +L+V++
Sbjct: 15 EGRGRLIKHMPPMLSGLLARLVKLLLGRHGSALHW---------RAAGAATVLLVIVLLA 65
Query: 1062 YAVIGMQVFGKIALVFGGGIHRNNNFQTFPQAV 1094
+ V ++P A+
Sbjct: 66 GS---------YLAVLAERGAPGAALISYPDAL 89
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+
IONS, cell membrane, transport PROT; 3.80A {Streptomyces
lividans} PDB: 1f6g_A
Length = 166
Score = 30.6 bits (69), Expect = 2.8
Identities = 12/98 (12%), Positives = 33/98 (33%), Gaps = 21/98 (21%)
Query: 366 LTRTNIMPPLGVSVLRCVRLLRVFKV--TKYWRSLSNLVASLLNSIQSIASLLLLLFLFI 423
+ + PP+ L R+ K+ ++ +L ++ + +LL + +
Sbjct: 1 MHHHHHHPPM-----LSGLLARLVKLLLGRHGSAL---------QWRAAGAATVLLVIVL 46
Query: 424 VIFALLGMQVFGGKFNFNPTIAKPRSNFDSFWQSLLTV 461
+ + L + + + + W S+ T
Sbjct: 47 LAGSYL---AVLAERGAPGA--QLITYPRALWWSVETA 79
Score = 28.7 bits (64), Expect = 9.1
Identities = 14/81 (17%), Positives = 28/81 (34%), Gaps = 21/81 (25%)
Query: 1015 FFRLFRVMRLIKLLSR-GEGIRTLLWTFIKSFQALPYVALLIVMLFFIYAVIGMQVFGKI 1073
L R+++L LL R G ++ +A +L+V++ +
Sbjct: 12 SGLLARLVKL--LLGRHGSALQW---------RAAGAATVLLVIVLLAGS---------Y 51
Query: 1074 ALVFGGGIHRNNNFQTFPQAV 1094
V T+P+A+
Sbjct: 52 LAVLAERGAPGAQLITYPRAL 72
>2zjr_S 50S ribosomal protein L25; ribosome, large ribosomal subunit,
ribonucleoprotein, RNA-binding, rRNA-binding,
tRNA-binding, methylation; 2.91A {Deinococcus
radiodurans} SCOP: b.53.1.1 PDB: 1njm_T* 1nwx_T* 1njp_T*
1xbp_T* 2zjp_S* 2zjq_S 1nwy_T 3cf5_S* 3dll_S* 3pio_S*
3pip_S* 1nkw_T 1sm1_T* 1yl3_V 2b66_Z 2b9n_Z 2b9p_Z
1pnu_T 1pny_T 1vor_W ...
Length = 237
Score = 30.9 bits (70), Expect = 3.0
Identities = 10/37 (27%), Positives = 14/37 (37%)
Query: 472 SPPRSIMENEEEEEEGSIIEGEEIEDESVREEEDGVK 508
PPR E E E + + + G E E + V
Sbjct: 172 LPPRLTAEELEAEVQAAQVAGLVAAGELSEEAAEAVL 208
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid
semi-synthetic, membrane protein; HET: 1EM; 1.72A
{Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C*
1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C*
2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C*
3ifx_A* 1j95_A 2jk5_C* ...
Length = 122
Score = 29.3 bits (66), Expect = 4.5
Identities = 11/91 (12%), Positives = 31/91 (34%), Gaps = 24/91 (26%)
Query: 377 VSVLRCVRLLRVFKV--TKYWRSLSNLVASLLNSIQSIASLLLLLFLFIVIFALLGMQVF 434
++ + L R+ K+ ++ +L ++ + +LL + ++ + L +
Sbjct: 1 MAPMLSGLLARLVKLLLGRHGSAL---------HWRAAGAATVLLVIVLLAGSYLAVLAE 51
Query: 435 GGKFNFNPTIAKPRSNF----DSFWQSLLTV 461
G P + + W + T
Sbjct: 52 RG---------APGAQLITYPRALWWACETA 73
Score = 28.5 bits (64), Expect = 8.9
Identities = 12/80 (15%), Positives = 27/80 (33%), Gaps = 19/80 (23%)
Query: 1015 FFRLFRVMRLIKLLSRGEGIRTLLWTFIKSFQALPYVALLIVMLFFIYAVIGMQVFGKIA 1074
L R+++L+ L G + ++A +L+V++ +
Sbjct: 6 SGLLARLVKLL-LGRHGSALH---------WRAAGAATVLLVIVLLAGS---------YL 46
Query: 1075 LVFGGGIHRNNNFQTFPQAV 1094
V T+P+A+
Sbjct: 47 AVLAERGAPGAQLITYPRAL 66
>2ww9_A SEC sixty-one protein homolog; ribonucleoprotein, transmembrane,
phospho signal sequence, membrane, ribosome, transport;
8.60A {Saccharomyces cerevisiae} PDB: 2wwa_A
Length = 490
Score = 30.4 bits (68), Expect = 5.1
Identities = 20/104 (19%), Positives = 34/104 (32%), Gaps = 15/104 (14%)
Query: 41 IFLVIFTVECVMKILAYGFVAHPGAYLRNGWNLLDFTIVVIGGYWEGPNNGITNFDNFGL 100
V+F+ + I + FV + I I G++E NN + F L
Sbjct: 293 CLSVLFSYTILFYIHIFAFVLIQLVAKNEPTH----IICKIMGHYENANNLLAVP-TFPL 347
Query: 101 AMLTVFQCITLEGWTDVLYNIEDALGRTWQWTYFVSMVILGAFF 144
++L L I TY +++ G +F
Sbjct: 348 SLLAPPTSFFKGVTQQPLTFI----------TYSAFILVTGIWF 381
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 29.7 bits (66), Expect = 7.2
Identities = 11/74 (14%), Positives = 23/74 (31%), Gaps = 16/74 (21%)
Query: 175 EKQQIEEDLRGYLDWITQAEDIE------PEGEERANHHDQKNKSSSETESADRLEGDEG 228
E ++ + +L + E E P E S + + DE
Sbjct: 152 ELSDTKQKGKKFL--VIAYEPFENIAIELPPNEI--------LFSENNDMDNNNDGVDEL 201
Query: 229 ENQESWWRKKNKDF 242
+ ++W +K +
Sbjct: 202 NKKCTFWDAISKLY 215
>3h95_A Nucleoside diphosphate-linked moiety X motif 6; NUDT6, nudix,
hydrolase, GFG, GFG-1, FGF2AS, structural GENO
structural genomics consortium, SGC; HET: FLC; 1.70A
{Homo sapiens}
Length = 199
Score = 29.1 bits (65), Expect = 9.7
Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 487 GSIIEGEEIEDESVRE--EEDGVKVQLENCDSEFYDYSY 523
G E+I D +VRE EE G+K + + S ++
Sbjct: 59 GLSEPEEDIGDTAVREVFEETGIKSEFRSVLSIRQQHTN 97
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.140 0.427
Gapped
Lambda K H
0.267 0.0439 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 26,082,361
Number of extensions: 1648971
Number of successful extensions: 4617
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4441
Number of HSP's successfully gapped: 98
Length of query: 1643
Length of database: 6,701,793
Length adjustment: 107
Effective length of query: 1536
Effective length of database: 3,714,246
Effective search space: 5705081856
Effective search space used: 5705081856
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 64 (29.2 bits)