RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12306
(1643 letters)
>d1orsc_ f.14.1.1 (C:) Potassium channel KVAP {Archaeon Aeropyrum
pernix [TaxId: 56636]}
Length = 132
Score = 63.0 bits (153), Expect = 4e-12
Identities = 12/147 (8%), Positives = 45/147 (30%), Gaps = 20/147 (13%)
Query: 903 FVTSQYFEYTIFCLIMINTLTLAMKFYRQ-PLFYADILDKMNMFFTTVFALEFVFKLAAF 961
+ E + +++ + + +++ Q Y L +++ + ++ ++
Sbjct: 2 VMEHPLVELGVSYAALLSVIVVVVEYTMQLSGEYLVRLYLVDLILVIILWADYAYRAYKS 61
Query: 962 RFKNYFSDAWNVFDFVIVMGSFIDIFSDSPPHAAAKATIPGSHEQTSGRLSINFFRLFRV 1021
+++ ++ + + + + FRL R+
Sbjct: 62 G-DPAGYVKKTLYEIPALVPAGLLALIEGHLA------------------GLGLFRLVRL 102
Query: 1022 MRLIKLLSRGEGIRTLLWTFIKSFQAL 1048
+R +++L L + L
Sbjct: 103 LRFLRILLIISRGSKFLSAIADAADKL 129
Score = 56.5 bits (136), Expect = 6e-10
Identities = 14/119 (11%), Positives = 40/119 (33%), Gaps = 6/119 (5%)
Query: 294 VTNIFFVALFTMEMTLKMYSLGFQEVTNIFFVALFTMEMTLKMYSLGFQGYFVSLFNRFD 353
+ ++ V + Y + V I + + + Y G ++
Sbjct: 17 LLSVIVVVVEYTMQLSGEYLVRLYLVDLILVII-LWADYAYRAYKSGDP-AGYVKKTLYE 74
Query: 354 CFVVIGSIGEMILTRTNIMPPLGVSVLRCVRLLRVFKVTKYWRSLSNLVASLLNSIQSI 412
++ + ++ G+ + R VRLLR ++ S ++++ ++ +
Sbjct: 75 IPALVPAGLLALIEGHLA----GLGLFRLVRLLRFLRILLIISRGSKFLSAIADAADKL 129
Score = 46.9 bits (111), Expect = 2e-06
Identities = 12/115 (10%), Positives = 32/115 (27%), Gaps = 8/115 (6%)
Query: 567 VWCHWICNHDHFGNAILFLGYFDNFFTAVFTIEILLKIISYGFILHDGAFCRSSFNLLDL 626
V + L+ D + + + G L ++
Sbjct: 23 VVVEYTMQLSGEYLVRLY--LVDLILVIILWADYAYRAYKSGDPAG-----YVKKTLYEI 75
Query: 627 LVVIVSVVAIYWNSAAIAFVKILRVLRVLRPLRAINRAKGLKHVVQCVIVAVKTI 681
++ + + + + R++R+LR LR + + + A +
Sbjct: 76 PALVPAGLLALIEGHLA-GLGLFRLVRLLRFLRILLIISRGSKFLSAIADAADKL 129
Score = 44.5 bits (105), Expect = 1e-05
Identities = 10/94 (10%), Positives = 23/94 (24%), Gaps = 7/94 (7%)
Query: 2 FEYLILLTIFANCVALAVYTPYPNSDSNSTNAYLENIEYIFLVIFTVECVMKILAYGFVA 61
E + + + + V S L ++ I ++I + + G
Sbjct: 8 VELGVSYAALLSVIVVVVEYTMQLSGEYLV--RLYLVDLILVIILWADYAYRAYKSGDP- 64
Query: 62 HPGAYLRNGWNLLDFTIVVIGGYWEGPNNGITNF 95
L + +V G +
Sbjct: 65 ----AGYVKKTLYEIPALVPAGLLALIEGHLAGL 94
>d1q3ia_ d.220.1.1 (A:) Sodium/potassium-transporting ATPase alpha
chain {Pig (Sus scrofa) [TaxId: 9823]}
Length = 214
Score = 30.2 bits (67), Expect = 1.5
Identities = 7/97 (7%), Positives = 25/97 (25%), Gaps = 5/97 (5%)
Query: 175 EKQQIEEDLRGYLDWITQAEDIEPEGEERANHHDQKNKSSSETESA-----DRLEGDEGE 229
+ + + +++ + +ESA + G +
Sbjct: 26 TFDKRSPTWTALSRIAGLCNRAVFKAGQENISVSKRDTAGDASESALLKCIELSCGSVRK 85
Query: 230 NQESWWRKKNKDFDRNNRRMRRACRKAVKSQGFYWLI 266
++ + F+ N+ + Q ++
Sbjct: 86 MRDRNPKVAEISFNSTNKYQLSIHEREDNPQSHVLVM 122
>d1rfma_ c.122.1.1 (A:) L-sulfolactate dehydrogenase {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 344
Score = 29.3 bits (65), Expect = 3.7
Identities = 24/176 (13%), Positives = 43/176 (24%), Gaps = 20/176 (11%)
Query: 832 TYYIIYIIIIAFFMVNIFVGFVIVTFQNEGEQEYKNCELDKNQRNCIE-FALKAKPVRRY 890
I IAF + T K E + + E A+
Sbjct: 152 KILGTNPIAIAFKGNKYKFSLDMATASI---ARGKILEALRKKIKIPEGCAVDKDGKPTT 208
Query: 891 IPKQRLQYKIWWFVTSQYFEYTIFCLIMINTLTLAMKFYRQPLFYADILDKMNMFFTTVF 950
P + L+ I F + + + ++ + + + F
Sbjct: 209 DPAKALEGCILPFGGPKGYGLALAIEMLSAIGGAEVGTKVKGTANPEERCTKGDLFI--- 265
Query: 951 ALEFVFKLAAFRFKNYFSDAWNVFDFVIVMGSFIDIFSDSPPHAAAKATIPGSHEQ 1006
F K F + +D +S P + IPG E+
Sbjct: 266 ----AINPEFFMGKEEFKRK---------VDELLDEIKNSEPAEGFEILIPGEIEE 308
>d1nrfa_ e.3.1.1 (A:) Penicillin receptor BlaR, C-terminal domain
{Bacillus licheniformis [TaxId: 1402]}
Length = 246
Score = 28.2 bits (62), Expect = 8.2
Identities = 13/82 (15%), Positives = 29/82 (35%), Gaps = 10/82 (12%)
Query: 506 GVKVQLENCDSEFYDYSYQADIMNNEDARPRRLSEFNTATKKQPIPPASSFFIFSA---- 561
G V+ E+ + F +S + ++ ++ + +N PAS++ +FSA
Sbjct: 4 GTNVEYEDYSTFFDKFSASGGFVL-FNSNRKKYTIYNRKESTSRFAPASTYKVFSALLAL 62
Query: 562 -----TNPFRVWCHWICNHDHF 578
T + +
Sbjct: 63 ESGIITKNDSHMTWDGTQYPYK 84
>d1kvka2 d.58.26.3 (A:226-394) Mevalonate kinase {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 169
Score = 27.7 bits (61), Expect = 9.4
Identities = 13/80 (16%), Positives = 32/80 (40%)
Query: 1516 KESHNTVTLQAGLRTLHDAGPELKRAISGNLEELVDDNPEPSHRVLAEYGLGKFAYPELV 1575
K +T L AG+R+ PE+ + +++ + + + A ++ E +
Sbjct: 13 KVPRSTKALVAGVRSRLIKFPEIMAPLLTSIDAISLECERVLGEMAAAPVPEQYLVLEEL 72
Query: 1576 KYTSKEMQEALNMTQEEMDR 1595
++ AL + +D+
Sbjct: 73 MDMNQHHLNALGVGHASLDQ 92
>d1r31a1 d.58.20.1 (A:111-220) NAD-binding domain of HMG-CoA
reductase {Pseudomonas mevalonii [TaxId: 32044]}
Length = 110
Score = 26.7 bits (59), Expect = 9.5
Identities = 9/52 (17%), Positives = 18/52 (34%), Gaps = 9/52 (17%)
Query: 4 YLILLTIFANCVALAVYTPYPNSDSNSTNAYLENIEYIFLVIFTVECVMKIL 55
L+ I A+ +N+ N E + + I + ++IL
Sbjct: 62 MLVAHLIVDVRDAMG---------ANTVNTMAEAVAPLMEAITGGQVRLRIL 104
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.325 0.140 0.427
Gapped
Lambda K H
0.267 0.0500 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 6,409,228
Number of extensions: 320105
Number of successful extensions: 1260
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1249
Number of HSP's successfully gapped: 20
Length of query: 1643
Length of database: 2,407,596
Length adjustment: 98
Effective length of query: 1545
Effective length of database: 1,062,056
Effective search space: 1640876520
Effective search space used: 1640876520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (27.0 bits)