BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy12307
         (106 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2KNX|A Chain A, Solution Structure Of Complement Repeat Cr17 From Lrp-1
          Length = 50

 Score = 28.9 bits (63), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 5/48 (10%)

Query: 17 GMERFACPTPDHMGRYRCIDDHVLCDGFIDCPTGEDEDRQNFLLENEL 64
          G   F+CP     G + C+ +  LCDG  DC  G DE      L N  
Sbjct: 8  GPSSFSCP-----GTHVCVPERWLCDGDKDCADGADESIAAGCLYNST 50


>pdb|2KNY|A Chain A, Fusion Construct Of Cr17 From Lrp-1 And Apoe Residues
          130-14
          Length = 80

 Score = 28.9 bits (63), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 5/46 (10%)

Query: 17 GMERFACPTPDHMGRYRCIDDHVLCDGFIDCPTGEDEDRQNFLLEN 62
          G   F+CP     G + C+ +  LCDG  DC  G DE      L N
Sbjct: 10 GPSSFSCP-----GTHVCVPERWLCDGDKDCADGADESIAAGCLYN 50


>pdb|2XRC|A Chain A, Human Complement Factor I
 pdb|2XRC|B Chain B, Human Complement Factor I
 pdb|2XRC|C Chain C, Human Complement Factor I
 pdb|2XRC|D Chain D, Human Complement Factor I
          Length = 565

 Score = 28.5 bits (62), Expect = 1.0,   Method: Composition-based stats.
 Identities = 11/20 (55%), Positives = 13/20 (65%)

Query: 34  CIDDHVLCDGFIDCPTGEDE 53
           CI     C+G +DC TGEDE
Sbjct: 253 CIPSQYQCNGEVDCITGEDE 272


>pdb|3OJY|A Chain A, Crystal Structure Of Human Complement Component C8
          Length = 554

 Score = 28.1 bits (61), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 11/22 (50%), Positives = 15/22 (68%)

Query: 33 RCIDDHVLCDGFIDCPTGEDED 54
          RC+  H++C+G  DC  G DED
Sbjct: 77 RCLKRHLVCNGDQDCLDGSDED 98


>pdb|2GTL|N Chain N, Lumbricus Erythrocruorin At 3.5a Resolution
          Length = 220

 Score = 26.9 bits (58), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 11/21 (52%), Positives = 13/21 (61%)

Query: 34 CIDDHVLCDGFIDCPTGEDED 54
          CI D ++CDG  DC    DED
Sbjct: 67 CISDLLVCDGHKDCHNAHDED 87


>pdb|2GTL|M Chain M, Lumbricus Erythrocruorin At 3.5a Resolution
          Length = 217

 Score = 26.6 bits (57), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 12/21 (57%), Positives = 13/21 (61%)

Query: 34 CIDDHVLCDGFIDCPTGEDED 54
          CI D + CDG  DC  G DED
Sbjct: 68 CIHDLLFCDGEKDCRDGSDED 88


>pdb|1O5U|A Chain A, Crystal Structure Of A Duf861 Family Protein (Tm1112) From
           Thermotoga Maritima At 1.83 A Resolution
 pdb|1O5U|B Chain B, Crystal Structure Of A Duf861 Family Protein (Tm1112) From
           Thermotoga Maritima At 1.83 A Resolution
          Length = 101

 Score = 26.2 bits (56), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 2/46 (4%)

Query: 62  NELCWGLSIYKALDKSTGLRSILNWSDLVNL--GLRIKWQGLESIR 105
           NE C+ L     +    G + ++   DLV    GLR +W+ LE +R
Sbjct: 50  NETCYILEGKVEVTTEDGKKYVIEKGDLVTFPKGLRCRWKVLEPVR 95


>pdb|1LKN|A Chain A, Solution Nmr Structure Of Protein Tm_1112 From Thermotoga
           Maritima. Ontario Centre For Structural Proteomics
           Target Tm1112_1_89; Northeast Structural Genomics
           Consortium Target Vt74.
 pdb|2K9Z|A Chain A, Nmr Structure Of The Protein Tm1112
          Length = 89

 Score = 26.2 bits (56), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 2/46 (4%)

Query: 62  NELCWGLSIYKALDKSTGLRSILNWSDLVNL--GLRIKWQGLESIR 105
           NE C+ L     +    G + ++   DLV    GLR +W+ LE +R
Sbjct: 38  NETCYILEGKVEVTTEDGKKYVIEKGDLVTFPKGLRCRWKVLEPVR 83


>pdb|1G0X|A Chain A, Crystal Structure Of The Ligand Binding Domain Of Lir-1
           (Ilt2)
 pdb|1P7Q|D Chain D, Crystal Structure Of Hla-A2 Bound To Lir-1, A Host And
           Viral Mhc Receptor
 pdb|1UFU|A Chain A, Crystal Structure Of Ligand Binding Domain Of
           Immunoglobulin-Like Transcript 2 (Ilt2; Lir-1)
          Length = 197

 Score = 26.2 bits (56), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 12/21 (57%), Positives = 12/21 (57%)

Query: 36  DDHVLCDGFIDCPTGEDEDRQ 56
           D  V  DGFI C  GEDE  Q
Sbjct: 122 DSQVAFDGFILCKEGEDEHPQ 142


>pdb|3D2U|D Chain D, Structure Of Ul18, A Peptide-binding Viral Mhc Mimic,
           Bound To A Host Inhibitory Receptor
 pdb|3D2U|H Chain H, Structure Of Ul18, A Peptide-binding Viral Mhc Mimic,
           Bound To A Host Inhibitory Receptor
          Length = 198

 Score = 26.2 bits (56), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 12/21 (57%), Positives = 12/21 (57%)

Query: 36  DDHVLCDGFIDCPTGEDEDRQ 56
           D  V  DGFI C  GEDE  Q
Sbjct: 123 DSQVAFDGFILCKEGEDEHPQ 143


>pdb|1UGN|A Chain A, Crystal Structure Of Lir1.02, One Of The Alleles Of Lir1
          Length = 198

 Score = 26.2 bits (56), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 12/21 (57%), Positives = 12/21 (57%)

Query: 36  DDHVLCDGFIDCPTGEDEDRQ 56
           D  V  DGFI C  GEDE  Q
Sbjct: 123 DSQVAFDGFILCKEGEDEHPQ 143


>pdb|3M0C|C Chain C, The X-Ray Crystal Structure Of Pcsk9 In Complex With The
           Ldl Receptor
          Length = 791

 Score = 25.8 bits (55), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 6/43 (13%)

Query: 11  CPPAEDGMERFACPTPDHMGRYRCIDDHVLCDGFIDCPTGEDE 53
           CPP     + F C    H G+  CI    +CD   DC  G DE
Sbjct: 101 CPPKTCSQDEFRC----HDGK--CISRQFVCDSDRDCLDGSDE 137


>pdb|1N7D|A Chain A, Extracellular Domain Of The Ldl Receptor
          Length = 699

 Score = 25.8 bits (55), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 6/43 (13%)

Query: 11  CPPAEDGMERFACPTPDHMGRYRCIDDHVLCDGFIDCPTGEDE 53
           CPP     + F C    H G+  CI    +CD   DC  G DE
Sbjct: 83  CPPKTCSQDEFRC----HDGK--CISRQFVCDSDRDCLDGSDE 119


>pdb|2GTL|O Chain O, Lumbricus Erythrocruorin At 3.5a Resolution
          Length = 215

 Score = 25.4 bits (54), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 11/21 (52%), Positives = 13/21 (61%)

Query: 33 RCIDDHVLCDGFIDCPTGEDE 53
          +CI    +CDG  DC  GEDE
Sbjct: 68 QCISKLFVCDGHNDCRNGEDE 88


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.142    0.476 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,590,802
Number of Sequences: 62578
Number of extensions: 140616
Number of successful extensions: 265
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 230
Number of HSP's gapped (non-prelim): 39
length of query: 106
length of database: 14,973,337
effective HSP length: 71
effective length of query: 35
effective length of database: 10,530,299
effective search space: 368560465
effective search space used: 368560465
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)