Query psy12307
Match_columns 106
No_of_seqs 52 out of 54
Neff 3.0
Searched_HMMs 29240
Date Fri Aug 16 15:42:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12307.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12307hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jm4_A Relaxin receptor 1; LDL 98.6 3.4E-08 1.2E-12 58.5 3.1 40 7-56 3-42 (43)
2 1k7b_A Subgroup A ROUS sarcoma 98.5 3.4E-08 1.2E-12 59.2 2.2 37 19-56 10-46 (47)
3 1cr8_A Protein (LOW density li 98.5 6E-08 2.1E-12 57.1 2.5 34 18-56 6-39 (42)
4 2knx_A Prolow-density lipoprot 98.4 7.5E-08 2.6E-12 59.1 2.3 33 19-56 10-42 (50)
5 1d2l_A Lipoprotein receptor re 98.4 1.3E-07 4.3E-12 57.0 2.9 35 19-59 9-43 (45)
6 1jrf_A TVA LDL-A module, subgr 98.4 4.2E-08 1.4E-12 58.6 0.6 36 19-55 8-43 (47)
7 1ajj_A LR5, low-density lipopr 98.4 1E-07 3.4E-12 54.7 2.0 32 19-56 5-36 (37)
8 3dpr_E LDL-receptor class A 3; 98.4 1.7E-07 5.7E-12 54.5 2.9 34 19-56 4-37 (39)
9 3a7q_B Low-density lipoprotein 98.4 1.8E-07 6.3E-12 55.5 2.4 38 8-56 5-42 (44)
10 2kny_A LRP-1, linker, APO-E; l 98.3 1.3E-07 4.6E-12 62.5 1.8 41 10-55 3-43 (80)
11 2i1p_A Low-density lipoprotein 98.3 1.1E-07 3.7E-12 57.4 1.0 35 18-57 9-43 (48)
12 2fyj_A Low-density lipoprotein 98.2 1.4E-06 4.8E-11 57.2 4.7 42 19-66 8-57 (82)
13 1j8e_A Low-density lipoprotein 98.2 2.1E-07 7E-12 55.3 0.5 34 19-58 8-41 (44)
14 2fcw_B LDL receptor, low-densi 98.2 9.5E-07 3.2E-11 58.1 2.8 42 19-66 6-53 (80)
15 2m0p_A Low-density lipoprotein 98.2 4.9E-07 1.7E-11 56.6 1.2 35 19-61 10-44 (52)
16 2fyj_A Low-density lipoprotein 98.0 5.2E-06 1.8E-10 54.4 4.3 24 33-56 57-80 (82)
17 2gtl_M Hemoglobin linker chain 97.8 3.7E-06 1.3E-10 65.2 1.2 41 9-58 52-92 (217)
18 2gtl_N Extracellular hemoglobi 97.8 9.3E-06 3.2E-10 63.5 3.2 41 9-58 51-91 (220)
19 2fcw_B LDL receptor, low-densi 97.7 9.9E-06 3.4E-10 53.2 1.3 26 33-58 53-78 (80)
20 2xrc_A Human complement factor 97.6 5.1E-05 1.7E-09 62.9 4.5 32 19-56 207-238 (565)
21 2gtl_O Extracellular hemoglobi 97.1 0.0001 3.5E-09 57.0 0.5 34 19-56 58-91 (215)
22 1n7d_A LDL receptor, low-densi 97.1 0.00048 1.6E-08 57.9 4.6 39 16-54 115-159 (699)
23 1n7d_A LDL receptor, low-densi 97.0 0.00047 1.6E-08 57.9 3.7 24 33-56 60-83 (699)
24 2xrc_A Human complement factor 96.9 0.00067 2.3E-08 56.2 4.4 52 8-63 226-282 (565)
25 3m0c_C LDL receptor, low-densi 96.6 0.00029 1E-08 61.0 0.0 40 8-58 21-60 (791)
26 3ojy_B Complement component C8 96.6 0.0015 5E-08 54.8 3.6 41 19-64 69-110 (537)
27 3m0c_C LDL receptor, low-densi 96.4 0.00055 1.9E-08 59.3 0.0 26 33-58 156-181 (791)
28 3ojy_A Complement component C8 96.4 0.002 6.9E-08 54.4 3.4 24 33-56 77-100 (554)
29 3t5o_A Complement component C6 95.3 0.0083 2.8E-07 52.7 2.7 33 19-57 121-153 (913)
30 1z8g_A Serine protease hepsin; 44.2 18 0.00063 27.7 3.3 24 65-89 15-39 (372)
31 1i8x_A Granulin-1; two beta-ha 37.3 12 0.0004 21.0 0.9 13 39-51 2-14 (30)
32 3d0j_A Uncharacterized protein 27.4 24 0.00082 25.6 1.4 18 76-93 22-39 (140)
33 1fwo_A Oryzain beta chain; bet 25.3 31 0.0011 19.8 1.4 14 39-52 2-15 (35)
34 2yka_B ORF57 protein, 52 kDa i 29.4 17 0.00057 20.0 0.0 12 81-92 6-17 (26)
No 1
>2jm4_A Relaxin receptor 1; LDL-A module, RXFP1 receptor, LGR7, signaling protein; NMR {Homo sapiens}
Probab=98.57 E-value=3.4e-08 Score=58.48 Aligned_cols=40 Identities=28% Similarity=0.636 Sum_probs=32.1
Q ss_pred cccCCCCCCCCCceecCCCCCCCCceeecCCCcccCCCCCCCCCCCCcCC
Q psy12307 7 MYLECPPAEDGMERFACPTPDHMGRYRCIDDHVLCDGFIDCPTGEDEDRQ 56 (106)
Q Consensus 7 ~~~~C~~~~~G~de~~Cptpd~~gR~~CI~~~~LCDG~~DCpdGeDE~~c 56 (106)
....|++ .+|.|. ..-.||+.+.+|||+.||++||||..|
T Consensus 3 ~~~~C~~-----~~f~C~-----~~g~CI~~~~~CDg~~DC~DgSDE~~C 42 (43)
T 2jm4_A 3 QDVKCSL-----GYFPCG-----NITKCLPQLLHCNGVDDCGNQADEDNC 42 (43)
T ss_dssp CSCSCCT-----TEEECS-----SSSCEEEGGGTTSSCCCSSSCCTTSSC
T ss_pred cCCCCCC-----CeeECC-----CCCeEcCHhhccCCCCCCCCCcccCCC
Confidence 3456754 589998 324599999999999999999999754
No 2
>1k7b_A Subgroup A ROUS sarcoma virus receptor PG800 and PG950; beta hairpin, 3-10 helix, calcium binding, membrane protein; NMR {Coturnix coturnix} SCOP: g.12.1.1
Probab=98.52 E-value=3.4e-08 Score=59.19 Aligned_cols=37 Identities=35% Similarity=0.675 Sum_probs=28.9
Q ss_pred ceecCCCCCCCCceeecCCCcccCCCCCCCCCCCCcCC
Q psy12307 19 ERFACPTPDHMGRYRCIDDHVLCDGFIDCPTGEDEDRQ 56 (106)
Q Consensus 19 de~~Cptpd~~gR~~CI~~~~LCDG~~DCpdGeDE~~c 56 (106)
.+|.|.... ...-.||+..++|||+.||++||||..|
T Consensus 10 ~~F~C~~~~-~~~g~CIp~~~~CDG~~DC~DgSDE~~C 46 (47)
T 1k7b_A 10 GQFRCSEPP-GAHGECYPQDWLCDGHPDCDDGRDEWGC 46 (47)
T ss_dssp TEECCSSCT-TSCCCCEEGGGSSCSSCCSSSSTTTGGG
T ss_pred CceEcCCCC-CCCCcCCCccccCCCcCCCCCCcccCCC
Confidence 589998320 1144699999999999999999999743
No 3
>1cr8_A Protein (LOW density lipoprotein receptor related protein); ligand binding, calcium binding, LDLR, LRP, lipid binding protein; NMR {Homo sapiens} SCOP: g.12.1.1
Probab=98.48 E-value=6e-08 Score=57.14 Aligned_cols=34 Identities=32% Similarity=0.529 Sum_probs=28.8
Q ss_pred CceecCCCCCCCCceeecCCCcccCCCCCCCCCCCCcCC
Q psy12307 18 MERFACPTPDHMGRYRCIDDHVLCDGFIDCPTGEDEDRQ 56 (106)
Q Consensus 18 ~de~~Cptpd~~gR~~CI~~~~LCDG~~DCpdGeDE~~c 56 (106)
..+|.|. ..-.||+..++|||+.||++||||..|
T Consensus 6 ~~~F~C~-----~~g~CI~~~~~CDg~~DC~DgSDE~~C 39 (42)
T 1cr8_A 6 TDEFQCR-----LDGLCIPLRWRCDGDTDCMDSSDEKSC 39 (42)
T ss_dssp TTCEECT-----TTCCEECGGGSSSSSCCSSSSTTTTTC
T ss_pred CCceEeC-----CCCeEcChhhcCCCCcCCCCCCcccCC
Confidence 3689998 334699999999999999999999754
No 4
>2knx_A Prolow-density lipoprotein receptor-related prote; LDLR, ligand binding module, ligand binding repeat, compleme repeat, protein binding; NMR {Homo sapiens}
Probab=98.44 E-value=7.5e-08 Score=59.09 Aligned_cols=33 Identities=42% Similarity=0.944 Sum_probs=28.9
Q ss_pred ceecCCCCCCCCceeecCCCcccCCCCCCCCCCCCcCC
Q psy12307 19 ERFACPTPDHMGRYRCIDDHVLCDGFIDCPTGEDEDRQ 56 (106)
Q Consensus 19 de~~Cptpd~~gR~~CI~~~~LCDG~~DCpdGeDE~~c 56 (106)
.+|.|+ +.-.||...++|||..||++||||..|
T Consensus 10 ~~F~C~-----~~g~CI~~~~~CDG~~DC~DgSDE~~C 42 (50)
T 2knx_A 10 SSFSCP-----GTHVCVPERWLCDGDKDCADGADESIA 42 (50)
T ss_dssp TEEEET-----TTTEEEETTTTTSSSCCSTTCGGGSGG
T ss_pred CcEEcC-----CCCeEcChhhcCCCCCCCCCCCccccc
Confidence 589997 444799999999999999999999864
No 5
>1d2l_A Lipoprotein receptor related protein; ligand binding, calcium binding, complement-like repeat, signaling protein; NMR {Homo sapiens} SCOP: g.12.1.1
Probab=98.42 E-value=1.3e-07 Score=56.99 Aligned_cols=35 Identities=37% Similarity=0.666 Sum_probs=30.3
Q ss_pred ceecCCCCCCCCceeecCCCcccCCCCCCCCCCCCcCCcce
Q psy12307 19 ERFACPTPDHMGRYRCIDDHVLCDGFIDCPTGEDEDRQNFL 59 (106)
Q Consensus 19 de~~Cptpd~~gR~~CI~~~~LCDG~~DCpdGeDE~~csC~ 59 (106)
.+|.|. +| .||+.+.+|||..||+|||||.++.|.
T Consensus 9 ~~F~C~----~g--~CI~~~~~CDG~~DC~DgSDE~~c~C~ 43 (45)
T 1d2l_A 9 GEFACA----NS--RCIQERWKCDGDNDCLDNSDEAPALCH 43 (45)
T ss_dssp TCEEET----TT--EEECGGGTTTSSCTTTTCSTTSTTTCC
T ss_pred CceEcC----CC--CeEehhhccCCCCCCCCCCCCCCCcCC
Confidence 578898 24 499999999999999999999987664
No 6
>1jrf_A TVA LDL-A module, subgroup A ROUS sarcoma virus receptors PG800 and PG950; disulfide bond, alpha helix, calcium CAGE, signaling protein; NMR {Coturnix japonica} SCOP: g.12.1.1
Probab=98.41 E-value=4.2e-08 Score=58.63 Aligned_cols=36 Identities=36% Similarity=0.716 Sum_probs=28.2
Q ss_pred ceecCCCCCCCCceeecCCCcccCCCCCCCCCCCCcC
Q psy12307 19 ERFACPTPDHMGRYRCIDDHVLCDGFIDCPTGEDEDR 55 (106)
Q Consensus 19 de~~Cptpd~~gR~~CI~~~~LCDG~~DCpdGeDE~~ 55 (106)
.+|.|.... .....||+.+++|||+.||++||||..
T Consensus 8 ~~F~C~~~~-~~~~~CIp~~~~CDG~~DC~DgSDE~~ 43 (47)
T 1jrf_A 8 GQFRCSEPP-GAHGECYPQDWLCDGHPDCDDGRDEWG 43 (47)
T ss_dssp CCSCSSSCS-CCCTTTSGGGGSSSSSCCSSSSCTTHH
T ss_pred CeeECCCCC-CCCCeEcCHhhcCCCCcCCCCCccccc
Confidence 588998310 014469999999999999999999964
No 7
>1ajj_A LR5, low-density lipoprotein receptor; LDL receptor, cysteine-rich module, calcium; 1.70A {Homo sapiens} SCOP: g.12.1.1
Probab=98.40 E-value=1e-07 Score=54.75 Aligned_cols=32 Identities=38% Similarity=0.703 Sum_probs=27.5
Q ss_pred ceecCCCCCCCCceeecCCCcccCCCCCCCCCCCCcCC
Q psy12307 19 ERFACPTPDHMGRYRCIDDHVLCDGFIDCPTGEDEDRQ 56 (106)
Q Consensus 19 de~~Cptpd~~gR~~CI~~~~LCDG~~DCpdGeDE~~c 56 (106)
.+|.|. +| .||..+.+|||+.||++||||..|
T Consensus 5 ~~f~C~----~g--~Ci~~~~~CDg~~DC~DgsDE~~C 36 (37)
T 1ajj_A 5 FEFHCL----SG--ECIHSSWRCDGGPDCKDKSDEENC 36 (37)
T ss_dssp TCEECT----TS--CEECGGGTTSSSCCSTTCGGGTTC
T ss_pred CceEcC----CC--CeechhhccCCCCCCCCCccccCC
Confidence 578998 24 499999999999999999999643
No 8
>3dpr_E LDL-receptor class A 3; human rhinovirus, VLDL-receptor, virus-protein complex, icosahedral virus, ATP-binding, capsid protein; HET: DAO; 3.50A {Homo sapiens} PDB: 1v9u_5*
Probab=98.40 E-value=1.7e-07 Score=54.46 Aligned_cols=34 Identities=35% Similarity=0.691 Sum_probs=28.5
Q ss_pred ceecCCCCCCCCceeecCCCcccCCCCCCCCCCCCcCC
Q psy12307 19 ERFACPTPDHMGRYRCIDDHVLCDGFIDCPTGEDEDRQ 56 (106)
Q Consensus 19 de~~Cptpd~~gR~~CI~~~~LCDG~~DCpdGeDE~~c 56 (106)
.+|.|.+ +...||+...+|||+.||++||||..|
T Consensus 4 ~~f~C~~----~~g~Cip~~~~CDg~~DC~dgsDE~~C 37 (39)
T 3dpr_E 4 HEISCGA----HSTQCIPVSWRCDGENDCDSGEDEENC 37 (39)
T ss_dssp TTCCCSS----SSSCCCCTTSSSSSSCCSTTTTTSTTC
T ss_pred CceecCC----CCCCEeCccccCCCcccCcCCcccccC
Confidence 5788982 235699999999999999999999754
No 9
>3a7q_B Low-density lipoprotein receptor-related protein; signaling protein; HET: NAG; 2.60A {Homo sapiens}
Probab=98.35 E-value=1.8e-07 Score=55.51 Aligned_cols=38 Identities=37% Similarity=0.629 Sum_probs=29.4
Q ss_pred ccCCCCCCCCCceecCCCCCCCCceeecCCCcccCCCCCCCCCCCCcCC
Q psy12307 8 YLECPPAEDGMERFACPTPDHMGRYRCIDDHVLCDGFIDCPTGEDEDRQ 56 (106)
Q Consensus 8 ~~~C~~~~~G~de~~Cptpd~~gR~~CI~~~~LCDG~~DCpdGeDE~~c 56 (106)
...|++ .+|.|. ++ .||....+|||+.||+|||||..|
T Consensus 5 ~~~C~~-----~~f~C~----~g--~CI~~~~~CDg~~DC~DgSDE~~C 42 (44)
T 3a7q_B 5 AKECEK-----DQFQCR----NE--RCIPSVWRCDEDDDCLDHSDEDDC 42 (44)
T ss_dssp ---CCT-----TEEECT----TS--CEEEGGGTTSSSCCSSSSTTTSCC
T ss_pred CCCCCC-----CceEcC----CC--CEeChhhccCCCCCCCCCccccCC
Confidence 346744 589998 23 599999999999999999999754
No 10
>2kny_A LRP-1, linker, APO-E; lipoprotein receptor, ligand binding module, COMP repeat, calcium, cell membrane, coated PIT, cytoplasm, DEVE protein; NMR {Homo sapiens}
Probab=98.34 E-value=1.3e-07 Score=62.54 Aligned_cols=41 Identities=37% Similarity=0.746 Sum_probs=31.8
Q ss_pred CCCCCCCCCceecCCCCCCCCceeecCCCcccCCCCCCCCCCCCcC
Q psy12307 10 ECPPAEDGMERFACPTPDHMGRYRCIDDHVLCDGFIDCPTGEDEDR 55 (106)
Q Consensus 10 ~C~~~~~G~de~~Cptpd~~gR~~CI~~~~LCDG~~DCpdGeDE~~ 55 (106)
.|++..=...+|.|+ +.-.||+.+.+|||..||+|||||..
T Consensus 3 ~C~~~~C~~~~f~C~-----~~g~CIp~~~~CDg~~DC~DgsDE~~ 43 (80)
T 2kny_A 3 KLEGKTCGPSSFSCP-----GTHVCVPERWLCDGDKDCADGADESI 43 (80)
T ss_dssp SCSSCCCSSSEEECT-----TSSCEEEHHHHTTSSCCSSSSTTTSG
T ss_pred CCCCCCCCCCceecC-----CCCeEcChhhcCCCCCCCCCCCcccc
Confidence 344433344689998 33469999999999999999999975
No 11
>2i1p_A Low-density lipoprotein receptor-related protein 2; cysteine-rich repeat, ligand binding domain, calcium CAGE, ligand binding protein; NMR {Rattus norvegicus}
Probab=98.33 E-value=1.1e-07 Score=57.40 Aligned_cols=35 Identities=31% Similarity=0.694 Sum_probs=29.2
Q ss_pred CceecCCCCCCCCceeecCCCcccCCCCCCCCCCCCcCCc
Q psy12307 18 MERFACPTPDHMGRYRCIDDHVLCDGFIDCPTGEDEDRQN 57 (106)
Q Consensus 18 ~de~~Cptpd~~gR~~CI~~~~LCDG~~DCpdGeDE~~cs 57 (106)
..+|.|. ....||...++|||+.||++||||..|.
T Consensus 9 ~~~F~C~-----~g~~CI~~~~~CDG~~DC~DgSDE~~C~ 43 (48)
T 2i1p_A 9 SAQFKCA-----DGSSCINSRYRCDGVYDCRDNSDEAGCP 43 (48)
T ss_dssp SSSEECS-----SSSCEECGGGSSSSSCCSSSSHHHHSSC
T ss_pred CCeeECC-----CCCEeCCHhhcCCCCCCCCCCcccccCC
Confidence 4689998 3236999999999999999999997653
No 12
>2fyj_A Low-density lipoprotein receptor-related protein 1; double module, complement type repeat, calcium, beta-2 hairpin, loop-structures; NMR {Homo sapiens} PDB: 2fyl_B
Probab=98.22 E-value=1.4e-06 Score=57.18 Aligned_cols=42 Identities=29% Similarity=0.421 Sum_probs=33.9
Q ss_pred ceecCCCCCCCCceeecCCCcccCCCCCCCCCCCC-cCC---c----ceEEecCCC
Q psy12307 19 ERFACPTPDHMGRYRCIDDHVLCDGFIDCPTGEDE-DRQ---N----FLLENELCW 66 (106)
Q Consensus 19 de~~Cptpd~~gR~~CI~~~~LCDG~~DCpdGeDE-~~c---s----C~Fyc~~~~ 66 (106)
.+|.|. +| .||+..++|||+.||++|||| ..| . -.|+|.++.
T Consensus 8 ~~f~C~----~g--~Ci~~~~~CDg~~DC~DgsDE~~~C~~~~C~~~~~f~C~~g~ 57 (82)
T 2fyj_A 8 NQFSCA----SG--RCIPISWTCDLDDDCGDRSDESASCAYPTCFPLTQFTCNNGR 57 (82)
T ss_dssp TEEETT----SS--CEEETTSSSSCSSSSCSTTTTTSSCCCSSSCSSSEEECTTSC
T ss_pred CceEeC----CC--CEEeccccCCCcccCCCccccccccccccCCCCCceECCCCC
Confidence 689998 24 499999999999999999999 443 2 468887653
No 13
>1j8e_A Low-density lipoprotein receptor-related protein 1; ligand binding, calcium binding, complement-like repeat, LRP receptor, signaling protein; 1.85A {Homo sapiens} SCOP: g.12.1.1
Probab=98.22 E-value=2.1e-07 Score=55.29 Aligned_cols=34 Identities=44% Similarity=0.844 Sum_probs=28.7
Q ss_pred ceecCCCCCCCCceeecCCCcccCCCCCCCCCCCCcCCcc
Q psy12307 19 ERFACPTPDHMGRYRCIDDHVLCDGFIDCPTGEDEDRQNF 58 (106)
Q Consensus 19 de~~Cptpd~~gR~~CI~~~~LCDG~~DCpdGeDE~~csC 58 (106)
.+|.|. +| .||+...+|||+.||+|||||..+.|
T Consensus 8 ~~F~C~----~g--~CI~~~~~CDg~~DC~DgSDE~~~~C 41 (44)
T 1j8e_A 8 TQFKCN----SG--RCIPEHWTCDGDNDCGDYSDETHANC 41 (44)
T ss_dssp TEEECT----TS--CEEEGGGTTSSSCCSSSSGGGSHHHH
T ss_pred CceEeC----CC--CeEecCcccCCCCCCCCCCCCCCccc
Confidence 589998 24 49999999999999999999976443
No 14
>2fcw_B LDL receptor, low-density lipoprotein receptor; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: g.12.1.1 g.12.1.1 PDB: 2kri_B
Probab=98.16 E-value=9.5e-07 Score=58.11 Aligned_cols=42 Identities=29% Similarity=0.557 Sum_probs=34.3
Q ss_pred ceecCCCCCCCCceeecCCCcccCCCCCCCCCCCCcCC------cceEEecCCC
Q psy12307 19 ERFACPTPDHMGRYRCIDDHVLCDGFIDCPTGEDEDRQ------NFLLENELCW 66 (106)
Q Consensus 19 de~~Cptpd~~gR~~CI~~~~LCDG~~DCpdGeDE~~c------sC~Fyc~~~~ 66 (106)
.+|.|. +| .||+..++|||+.||++||||..| .-.|+|.++.
T Consensus 6 ~~F~C~----~g--~CI~~~~~CDg~~DC~DgSDE~~C~~~~C~~~~f~C~~g~ 53 (80)
T 2fcw_B 6 AEFRCH----DG--KCISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNSST 53 (80)
T ss_dssp TEEECT----TS--CEEEGGGTTSSSCCSTTCTTTTTHHHHHCCTTEEECTTSC
T ss_pred CccCCC----CC--CEEeeecccCCcccCCCcccccccccccCCceeeECCCCC
Confidence 589998 24 499999999999999999999864 2378887653
No 15
>2m0p_A Low-density lipoprotein receptor-related protein; complement type repeat, megalin, LDL receptor FAMI lipid binding protein; NMR {Homo sapiens}
Probab=98.15 E-value=4.9e-07 Score=56.56 Aligned_cols=35 Identities=31% Similarity=0.653 Sum_probs=29.3
Q ss_pred ceecCCCCCCCCceeecCCCcccCCCCCCCCCCCCcCCcceEE
Q psy12307 19 ERFACPTPDHMGRYRCIDDHVLCDGFIDCPTGEDEDRQNFLLE 61 (106)
Q Consensus 19 de~~Cptpd~~gR~~CI~~~~LCDG~~DCpdGeDE~~csC~Fy 61 (106)
.+|.|. +| .||+...+|||..||+|||||. .|+|.
T Consensus 10 ~~F~C~----nG--~CIp~~~~CDG~~DC~DgSDE~--~~~~~ 44 (52)
T 2m0p_A 10 TQYTCD----NH--QCISKNWVCDTDNDCGDGSDEK--NCNST 44 (52)
T ss_dssp SEEECT----TC--CEEETTSTTSSSCSSSSCHHHH--SCCCC
T ss_pred CceECC----CC--CEEecCccCCCCCCCCCCCccc--cchhh
Confidence 589998 35 4999999999999999999996 45443
No 16
>2fyj_A Low-density lipoprotein receptor-related protein 1; double module, complement type repeat, calcium, beta-2 hairpin, loop-structures; NMR {Homo sapiens} PDB: 2fyl_B
Probab=98.03 E-value=5.2e-06 Score=54.43 Aligned_cols=24 Identities=38% Similarity=0.613 Sum_probs=21.2
Q ss_pred eecCCCcccCCCCCCCCCCCCcCC
Q psy12307 33 RCIDDHVLCDGFIDCPTGEDEDRQ 56 (106)
Q Consensus 33 ~CI~~~~LCDG~~DCpdGeDE~~c 56 (106)
.||...++|||+.||++||||..|
T Consensus 57 ~CI~~~~~CDG~~DC~DgSDE~~C 80 (82)
T 2fyj_A 57 RCININWRCDNDNDCGDNSDEAGC 80 (82)
T ss_dssp CEEETTCBSSSSBCCSSSSSCSCC
T ss_pred CeEcHHHccCCCCcCCCCccccCC
Confidence 478888999999999999999754
No 17
>2gtl_M Hemoglobin linker chain L1; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1
Probab=97.84 E-value=3.7e-06 Score=65.19 Aligned_cols=41 Identities=34% Similarity=0.704 Sum_probs=31.4
Q ss_pred cCCCCCCCCCceecCCCCCCCCceeecCCCcccCCCCCCCCCCCCcCCcc
Q psy12307 9 LECPPAEDGMERFACPTPDHMGRYRCIDDHVLCDGFIDCPTGEDEDRQNF 58 (106)
Q Consensus 9 ~~C~~~~~G~de~~Cptpd~~gR~~CI~~~~LCDG~~DCpdGeDE~~csC 58 (106)
..|++ .+|.|.. ..-.||+...+|||..||+|||||.+..|
T Consensus 52 ~~C~~-----~~F~C~~----~~g~CI~~~~~CDG~~DC~DgSDE~~~~C 92 (217)
T 2gtl_M 52 HHCDE-----HESECRG----DVPECIHDLLFCDGEKDCRDGSDEDPETC 92 (217)
T ss_dssp CCCCT-----TEEECSS----SSCCEEEGGGTTSSSCCSSSSTTTSHHHH
T ss_pred CCCCC-----CceecCC----CCCcEechhhccCCCCCCCCCCccccCcC
Confidence 45754 5889971 13459999999999999999999974334
No 18
>2gtl_N Extracellular hemoglobin linker L2 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1
Probab=97.82 E-value=9.3e-06 Score=63.51 Aligned_cols=41 Identities=34% Similarity=0.767 Sum_probs=32.1
Q ss_pred cCCCCCCCCCceecCCCCCCCCceeecCCCcccCCCCCCCCCCCCcCCcc
Q psy12307 9 LECPPAEDGMERFACPTPDHMGRYRCIDDHVLCDGFIDCPTGEDEDRQNF 58 (106)
Q Consensus 9 ~~C~~~~~G~de~~Cptpd~~gR~~CI~~~~LCDG~~DCpdGeDE~~csC 58 (106)
..|++ .+|.|+. ++-.||+...+|||..||+|||||.+..|
T Consensus 51 ~~C~~-----~eFqC~~----~~g~CIp~~wvCDG~~DC~DGSDE~~~~C 91 (220)
T 2gtl_N 51 THCEK-----RTFQCGG----NEQECISDLLVCDGHKDCHNAHDEDPDVC 91 (220)
T ss_dssp CSSCT-----TEEECCS----SSCCEEETTTTTSSSCCSTTCTTSCGGGG
T ss_pred CCCCC-----CccCcCC----CCCcEeCcceecCCCCCCCCCCccCcccC
Confidence 46744 5899971 24569999999999999999999974334
No 19
>2fcw_B LDL receptor, low-density lipoprotein receptor; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: g.12.1.1 g.12.1.1 PDB: 2kri_B
Probab=97.70 E-value=9.9e-06 Score=53.20 Aligned_cols=26 Identities=38% Similarity=0.593 Sum_probs=21.9
Q ss_pred eecCCCcccCCCCCCCCCCCCcCCcc
Q psy12307 33 RCIDDHVLCDGFIDCPTGEDEDRQNF 58 (106)
Q Consensus 33 ~CI~~~~LCDG~~DCpdGeDE~~csC 58 (106)
.||+...+|||+.||++||||.+..|
T Consensus 53 ~Ci~~~~~CDg~~DC~dgsDE~~~~C 78 (80)
T 2fcw_B 53 TCIPQLWACDNDPDCEDGSDEWPQRC 78 (80)
T ss_dssp CEEEGGGTTSSSCCSTTCGGGCGGGC
T ss_pred CEEecccccCCCcCCCCCCCcCcccC
Confidence 47888899999999999999965443
No 20
>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen activating factor, S protease, complement system; HET: NAG; 2.69A {Homo sapiens}
Probab=97.59 E-value=5.1e-05 Score=62.89 Aligned_cols=32 Identities=34% Similarity=0.608 Sum_probs=21.2
Q ss_pred ceecCCCCCCCCceeecCCCcccCCCCCCCCCCCCcCC
Q psy12307 19 ERFACPTPDHMGRYRCIDDHVLCDGFIDCPTGEDEDRQ 56 (106)
Q Consensus 19 de~~Cptpd~~gR~~CI~~~~LCDG~~DCpdGeDE~~c 56 (106)
++|.|. ++ .||+...+|||+.||+|||||..|
T Consensus 207 ~~~~C~----~~--~ci~~~~~Cdg~~dC~d~sDE~~C 238 (565)
T 2xrc_A 207 DFFQCV----NG--KYISQMKACDGINDCGDQSDELCC 238 (565)
T ss_dssp --CBCT----TS--CBCCTTSTTSSSCCSSSSSSSSSB
T ss_pred CeeECC----CC--CccCHHHcCCCcccCCCCcccccc
Confidence 346665 12 377777888888888888888654
No 21
>2gtl_O Extracellular hemoglobin linker L3 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1
Probab=97.08 E-value=0.0001 Score=56.97 Aligned_cols=34 Identities=35% Similarity=0.745 Sum_probs=27.4
Q ss_pred ceecCCCCCCCCceeecCCCcccCCCCCCCCCCCCcCC
Q psy12307 19 ERFACPTPDHMGRYRCIDDHVLCDGFIDCPTGEDEDRQ 56 (106)
Q Consensus 19 de~~Cptpd~~gR~~CI~~~~LCDG~~DCpdGeDE~~c 56 (106)
.+|.|.. +.-.||+...+|||..||++||||..|
T Consensus 58 ~~F~C~~----~~g~CIp~~~~CDG~~DC~DgSDE~~C 91 (215)
T 2gtl_O 58 HEHQCGG----DDPQCISKLFVCDGHNDCRNGEDEKDC 91 (215)
T ss_dssp TEEECCS----SSCCEEEGGGTTSSSCCSSSCHHHHCC
T ss_pred cceeeCC----CCCcCccccccCCCCCcCCCcccccCC
Confidence 5788841 123499999999999999999999765
No 22
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.07 E-value=0.00048 Score=57.85 Aligned_cols=39 Identities=33% Similarity=0.583 Sum_probs=25.9
Q ss_pred CCCceecCCCCC-CCCc-----eeecCCCcccCCCCCCCCCCCCc
Q psy12307 16 DGMERFACPTPD-HMGR-----YRCIDDHVLCDGFIDCPTGEDED 54 (106)
Q Consensus 16 ~G~de~~Cptpd-~~gR-----~~CI~~~~LCDG~~DCpdGeDE~ 54 (106)
+|.||..|+.+. ..+. ..||...++|||..||++||||.
T Consensus 115 dgsDE~~C~~~~C~~~~f~C~~~~Ci~~~~~Cdg~~dC~dgsDE~ 159 (699)
T 1n7d_A 115 DGSDEASCPVLTCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEW 159 (699)
T ss_dssp SSCSSSSCCCCCCCSSCCCCSSSCCCCTTSTTCSSCCSSSSSSSS
T ss_pred CCCccCCcCccccCccccCCCCCcccchhcccCCCCcCCCCcccc
Confidence 366776665321 0112 24788888999999999999993
No 23
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=96.97 E-value=0.00047 Score=57.88 Aligned_cols=24 Identities=46% Similarity=0.936 Sum_probs=14.6
Q ss_pred eecCCCcccCCCCCCCCCCCCcCC
Q psy12307 33 RCIDDHVLCDGFIDCPTGEDEDRQ 56 (106)
Q Consensus 33 ~CI~~~~LCDG~~DCpdGeDE~~c 56 (106)
.||...++|||..||++||||..|
T Consensus 60 ~Ci~~~~~Cdg~~dC~dgsDE~~C 83 (699)
T 1n7d_A 60 RCIPQFWRCDGQVDCDNGSDEQGC 83 (699)
T ss_dssp CCCCSSSTTSSSCCC-CCCTTTSC
T ss_pred ceeCcceecCCcccCCCCcccCcc
Confidence 466666666666666666666543
No 24
>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen activating factor, S protease, complement system; HET: NAG; 2.69A {Homo sapiens}
Probab=96.95 E-value=0.00067 Score=56.20 Aligned_cols=52 Identities=25% Similarity=0.488 Sum_probs=34.0
Q ss_pred ccCCCCCCCCCceecCCCCCCCCcee-----ecCCCcccCCCCCCCCCCCCcCCcceEEec
Q psy12307 8 YLECPPAEDGMERFACPTPDHMGRYR-----CIDDHVLCDGFIDCPTGEDEDRQNFLLENE 63 (106)
Q Consensus 8 ~~~C~~~~~G~de~~Cptpd~~gR~~-----CI~~~~LCDG~~DCpdGeDE~~csC~Fyc~ 63 (106)
..+|+. +.||..|+.- ..+.+. ||....+|||..||++|+||..|..-+|..
T Consensus 226 ~~dC~d---~sDE~~C~~c-~~~~~~C~~~~C~~~~~~cdG~~dC~~gsDE~~C~~~~~~~ 282 (565)
T 2xrc_A 226 INDCGD---QSDELCCKAC-QGKGFHCKSGVCIPSQYQCNGEVDCITGEDEVGCAGFASVA 282 (565)
T ss_dssp SCCSSS---SSSSSSBSSC-SSSCEEETTTEEECGGGTTSSSCCSSSCTTSSSCC------
T ss_pred cccCCC---Cccccccccc-CCCceecCCCcccCccccCCCcccCCCCccccCcCCccccc
Confidence 456744 7888888532 123333 677779999999999999998887766653
No 25
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=96.65 E-value=0.00029 Score=61.01 Aligned_cols=40 Identities=33% Similarity=0.774 Sum_probs=0.0
Q ss_pred ccCCCCCCCCCceecCCCCCCCCceeecCCCcccCCCCCCCCCCCCcCCcc
Q psy12307 8 YLECPPAEDGMERFACPTPDHMGRYRCIDDHVLCDGFIDCPTGEDEDRQNF 58 (106)
Q Consensus 8 ~~~C~~~~~G~de~~Cptpd~~gR~~CI~~~~LCDG~~DCpdGeDE~~csC 58 (106)
...|++ .+|.|. +| .||...++|||..||+|||||..+.|
T Consensus 21 ~~~C~~-----~~f~C~----~g--~Ci~~~~~CDg~~dC~D~sDE~~~~C 60 (791)
T 3m0c_C 21 GDRCER-----NEFQCQ----DG--KCISYKWVCDGSAECQDGSDESQETC 60 (791)
T ss_dssp ---------------------------------------------------
T ss_pred cCCcCc-----CccCCC----CC--CEEehhhcCCCCccCCCCCccccccc
Confidence 446744 589997 34 49999999999999999999986333
No 26
>3ojy_B Complement component C8 beta chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens}
Probab=96.56 E-value=0.0015 Score=54.80 Aligned_cols=41 Identities=32% Similarity=0.701 Sum_probs=30.2
Q ss_pred ceecCCCCCCCCceeecCCCcccCCCCCCCCCCCCcCC-cceEEecC
Q psy12307 19 ERFACPTPDHMGRYRCIDDHVLCDGFIDCPTGEDEDRQ-NFLLENEL 64 (106)
Q Consensus 19 de~~Cptpd~~gR~~CI~~~~LCDG~~DCpdGeDE~~c-sC~Fyc~~ 64 (106)
++|.|.+ +| .||....+|||..||.|||||..| ...+-|..
T Consensus 69 ~~f~C~~---~g--~Ci~~~~~Cdg~~dC~d~sdE~~c~~~~~~C~~ 110 (537)
T 3ojy_B 69 EGFVCAQ---TG--RCVNRRLLCNGDNDCGDQSDEANCRRIYKKCQH 110 (537)
T ss_dssp SSEECTT---TC--CEECGGGTTSSSCCSSSSCTTSSCSSCSSCCSS
T ss_pred CccCcCC---CC--cEeeccccCCCCCCCCCccccccCCCCCCcccc
Confidence 4566651 24 499999999999999999999887 33444543
No 27
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=96.38 E-value=0.00055 Score=59.32 Aligned_cols=26 Identities=38% Similarity=0.593 Sum_probs=0.0
Q ss_pred eecCCCcccCCCCCCCCCCCCcCCcc
Q psy12307 33 RCIDDHVLCDGFIDCPTGEDEDRQNF 58 (106)
Q Consensus 33 ~CI~~~~LCDG~~DCpdGeDE~~csC 58 (106)
.||+..++|||..||+||+||..+.|
T Consensus 156 ~Ci~~~~~Cdg~~dC~dgsDE~~~~C 181 (791)
T 3m0c_C 156 TCIPQLWACDNDPDCEDGSDEWPQRC 181 (791)
T ss_dssp --------------------------
T ss_pred ccccccccCCCCCcCCCCCCcccccC
Confidence 46666677777777777777754333
No 28
>3ojy_A Complement component C8 alpha chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens}
Probab=96.36 E-value=0.002 Score=54.42 Aligned_cols=24 Identities=46% Similarity=1.023 Sum_probs=22.2
Q ss_pred eecCCCcccCCCCCCCCCCCCcCC
Q psy12307 33 RCIDDHVLCDGFIDCPTGEDEDRQ 56 (106)
Q Consensus 33 ~CI~~~~LCDG~~DCpdGeDE~~c 56 (106)
.||+...+|||..||.||+||..|
T Consensus 77 ~Ci~~~~~Cdg~~dC~d~sDE~~C 100 (554)
T 3ojy_A 77 RCLKRHLVCNGDQDCLDGSDEDDC 100 (554)
T ss_dssp CEECGGGTTSSSCCSSSCTTSSSC
T ss_pred EEcccccccCCcccCCCccccccC
Confidence 488899999999999999999876
No 29
>3t5o_A Complement component C6; macpf, MAC, membrane attack complex, innate IMMU system, blood, membrane, cytolysin, immune SYST; HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens} PDB: 4a5w_B* 4e0s_B*
Probab=95.28 E-value=0.0083 Score=52.72 Aligned_cols=33 Identities=36% Similarity=0.805 Sum_probs=26.6
Q ss_pred ceecCCCCCCCCceeecCCCcccCCCCCCCCCCCCcCCc
Q psy12307 19 ERFACPTPDHMGRYRCIDDHVLCDGFIDCPTGEDEDRQN 57 (106)
Q Consensus 19 de~~Cptpd~~gR~~CI~~~~LCDG~~DCpdGeDE~~cs 57 (106)
++|.|. +| .||....+|||..||.|||||..|.
T Consensus 121 ~~F~C~----~g--~ci~~~~~c~g~~dC~d~sde~~C~ 153 (913)
T 3t5o_A 121 NKFRCD----SG--RCIARKLECNGENDCGDNSDERDCG 153 (913)
T ss_dssp SEEECT----TS--CEEEGGGSSSSSCCSSSSGGGTTCS
T ss_pred cccccC----CC--ceEccceecCCcccCCCccccccCC
Confidence 456665 23 4888899999999999999998763
No 30
>1z8g_A Serine protease hepsin; serine protease hepsin, protease, hydrolase-hydrolase inhibi complex; HET: AR7; 1.55A {Homo sapiens} SCOP: b.47.1.2 d.170.1.2 PDB: 3t2n_A 1o5e_H* 1o5f_H* 1p57_B* 1o5e_L* 1o5f_L* 1p57_A*
Probab=44.20 E-value=18 Score=27.72 Aligned_cols=24 Identities=8% Similarity=-0.128 Sum_probs=18.2
Q ss_pred CCceeeeeccccccce-EEecCcchh
Q psy12307 65 CWGLSIYKALDKSTGL-RSILNWSDL 89 (106)
Q Consensus 65 ~~pLsVy~~l~~s~~l-~~~~nw~~~ 89 (106)
.--|.||..-. ..|. ||.++|+..
T Consensus 15 ~g~~ev~~~~~-~~w~~vC~d~w~~~ 39 (372)
T 1z8g_A 15 DARLMVFDKTE-GTWRLLCSSRSNAR 39 (372)
T ss_dssp TCBEEEEETTT-TEEEEEBCCTTHHH
T ss_pred CEEEEEEECCC-CCCccccCCCCCch
Confidence 35677887765 5788 999999854
No 31
>1i8x_A Granulin-1; two beta-hairpin stack, cytokine; NMR {Synthetic} SCOP: g.3.16.1 PDB: 1qgm_A 1i8y_A
Probab=37.34 E-value=12 Score=20.95 Aligned_cols=13 Identities=38% Similarity=0.943 Sum_probs=11.0
Q ss_pred cccCCCCCCCCCC
Q psy12307 39 VLCDGFIDCPTGE 51 (106)
Q Consensus 39 ~LCDG~~DCpdGe 51 (106)
..||.+..||+|+
T Consensus 2 v~CD~~~~CP~~~ 14 (30)
T 1i8x_A 2 IHCDAATICPDGT 14 (30)
T ss_dssp CCTTTTCCCCTTE
T ss_pred ccCCCCccCCCCC
Confidence 4699999999886
No 32
>3d0j_A Uncharacterized protein CA_C3497; beta-barrel, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.53A {Clostridium acetobutylicum atcc 824}
Probab=27.43 E-value=24 Score=25.57 Aligned_cols=18 Identities=22% Similarity=0.307 Sum_probs=15.2
Q ss_pred cccceEEecCcchhcccc
Q psy12307 76 KSTGLRSILNWSDLVNLG 93 (106)
Q Consensus 76 ~s~~l~~~~nw~~~~~~~ 93 (106)
...|+|++.||..+..++
T Consensus 22 ~~~W~Va~~n~~~~~~~~ 39 (140)
T 3d0j_A 22 NEKWLVCIKNWKPDNDIE 39 (140)
T ss_dssp CSSEEEEEEECCGGGBTT
T ss_pred cCCEEEEEEeccCcCCcc
Confidence 367999999999997665
No 33
>1fwo_A Oryzain beta chain; beta-hairpin stack fold, granulin/epithelin-like protein repeats, hydrolase; NMR {Synthetic} SCOP: g.3.16.1
Probab=25.33 E-value=31 Score=19.78 Aligned_cols=14 Identities=36% Similarity=0.975 Sum_probs=11.5
Q ss_pred cccCCCCCCCCCCC
Q psy12307 39 VLCDGFIDCPTGED 52 (106)
Q Consensus 39 ~LCDG~~DCpdGeD 52 (106)
.+||.+.-||.|+-
T Consensus 2 ~~CD~~~sCP~~~T 15 (35)
T 1fwo_A 2 HVCDDNFSCPAGST 15 (35)
T ss_dssp CCSSSSCCCCSSSE
T ss_pred ccCCCcccCCCCCc
Confidence 46999999998863
No 34
>2yka_B ORF57 protein, 52 kDa immediate-early phosphoprotein; RNA binding protein-transcription complex, RNA binding prote; NMR {Saimiriine herpesvirus 2}
Probab=29.39 E-value=17 Score=19.96 Aligned_cols=12 Identities=25% Similarity=0.448 Sum_probs=10.2
Q ss_pred EEecCcchhccc
Q psy12307 81 RSILNWSDLVNL 92 (106)
Q Consensus 81 ~~~~nw~~~~~~ 92 (106)
.|--||++.||-
T Consensus 6 scr~nWs~RV~E 17 (26)
T 2yka_B 6 SCKTSWADRVRE 17 (26)
Confidence 588899999984
Done!