RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12307
(106 letters)
>d1xfea2 g.12.1.1 (A:1-44) Ligand-binding domain of low-density
lipoprotein receptor {Human (Homo sapiens) [TaxId:
9606]}
Length = 44
Score = 31.7 bits (72), Expect = 0.002
Identities = 7/25 (28%), Positives = 10/25 (40%)
Query: 33 RCIDDHVLCDGFIDCPTGEDEDRQN 57
CI +C+ DC DE +
Sbjct: 18 ECITLDKVCNMARDCRDWSDEPIKE 42
>d1v9u5_ g.12.1.1 (5:) Very low-density lipoprotein receptor
{Human (Homo sapiens) [TaxId: 9606]}
Length = 39
Score = 31.7 bits (72), Expect = 0.002
Identities = 14/44 (31%), Positives = 18/44 (40%), Gaps = 9/44 (20%)
Query: 11 CPPAEDGMERFACPTPDHMGRYRCIDDHVLCDGFIDCPTGEDED 54
C E +C +CI CDG DC +GEDE+
Sbjct: 1 CRIHE-----ISCGA----HSTQCIPVSWRCDGENDCDSGEDEE 35
>d2fcwb2 g.12.1.1 (B:125-163) Ligand-binding domain of low-density
lipoprotein receptor {Human (Homo sapiens) [TaxId:
9606]}
Length = 39
Score = 31.3 bits (71), Expect = 0.002
Identities = 10/25 (40%), Positives = 10/25 (40%)
Query: 33 RCIDDHVLCDGFIDCPTGEDEDRQN 57
CI CD DC G DE Q
Sbjct: 14 TCIPQLWACDNDPDCEDGSDEWPQR 38
>d2gtlo2 g.12.1.1 (O:60-100) Extracellular hemoglobin linker l3
subunit {Common earthworm (Lumbricus terrestris)
[TaxId: 6398]}
Length = 41
Score = 30.9 bits (70), Expect = 0.003
Identities = 15/43 (34%), Positives = 17/43 (39%), Gaps = 9/43 (20%)
Query: 11 CPPAEDGMERFACPTPDHMGRYRCIDDHVLCDGFIDCPTGEDE 53
C E C D +CI +CDG DC GEDE
Sbjct: 3 CDEHE-----HQCGGDDP----QCISKLFVCDGHNDCRNGEDE 36
>d2gtlm2 g.12.1.1 (M:60-101) Hemoglobin linker chain l1 {Common
earthworm (Lumbricus terrestris) [TaxId: 6398]}
Length = 42
Score = 31.0 bits (70), Expect = 0.004
Identities = 12/22 (54%), Positives = 13/22 (59%)
Query: 33 RCIDDHVLCDGFIDCPTGEDED 54
CI D + CDG DC G DED
Sbjct: 16 ECIHDLLFCDGEKDCRDGSDED 37
>d1d2la_ g.12.1.1 (A:) Ligand-binding domain of low-density
lipoprotein receptor {Human (Homo sapiens) [TaxId:
9606]}
Length = 45
Score = 30.9 bits (70), Expect = 0.004
Identities = 10/25 (40%), Positives = 11/25 (44%)
Query: 33 RCIDDHVLCDGFIDCPTGEDEDRQN 57
RCI + CDG DC DE
Sbjct: 17 RCIQERWKCDGDNDCLDNSDEAPAL 41
>d1f5ya2 g.12.1.1 (A:45-85) Ligand-binding domain of low-density
lipoprotein receptor {Human (Homo sapiens) [TaxId:
9606]}
Length = 41
Score = 30.5 bits (69), Expect = 0.004
Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 9/45 (20%)
Query: 9 LECPPAEDGMERFACPTPDHMGRYRCIDDHVLCDGFIDCPTGEDE 53
+ C + F+C + RCI CDG +DC G DE
Sbjct: 3 VTCKSGD-----FSCGGRVN----RCIPQFWRCDGQVDCDNGSDE 38
>d1j8ea_ g.12.1.1 (A:) Ligand-binding domain of low-density
lipoprotein receptor {Human (Homo sapiens) [TaxId:
9606]}
Length = 44
Score = 30.9 bits (70), Expect = 0.004
Identities = 11/22 (50%), Positives = 12/22 (54%)
Query: 33 RCIDDHVLCDGFIDCPTGEDED 54
RCI +H CDG DC DE
Sbjct: 16 RCIPEHWTCDGDNDCGDYSDET 37
>d2fcwb1 g.12.1.1 (B:86-124) Ligand-binding domain of low-density
lipoprotein receptor {Human (Homo sapiens) [TaxId:
9606]}
Length = 39
Score = 30.4 bits (69), Expect = 0.004
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 33 RCIDDHVLCDGFIDCPTGEDED 54
+CI +CD DC G DE
Sbjct: 14 KCISRQFVCDSDRDCLDGSDEA 35
>d1cr8a_ g.12.1.1 (A:) Ligand-binding domain of low-density
lipoprotein receptor {Human (Homo sapiens) [TaxId:
9606]}
Length = 42
Score = 30.5 bits (69), Expect = 0.004
Identities = 9/22 (40%), Positives = 9/22 (40%)
Query: 33 RCIDDHVLCDGFIDCPTGEDED 54
CI CDG DC DE
Sbjct: 16 LCIPLRWRCDGDTDCMDSSDEK 37
>d2gtln2 g.12.1.1 (N:61-101) Extracellular hemoglobin linker l2
subunit {Common earthworm (Lumbricus terrestris)
[TaxId: 6398]}
Length = 41
Score = 30.6 bits (69), Expect = 0.005
Identities = 14/44 (31%), Positives = 16/44 (36%), Gaps = 9/44 (20%)
Query: 11 CPPAEDGMERFACPTPDHMGRYRCIDDHVLCDGFIDCPTGEDED 54
C F C CI D ++CDG DC DED
Sbjct: 2 CEKRT-----FQCGG----NEQECISDLLVCDGHKDCHNAHDED 36
>d1k7ba_ g.12.1.1 (A:) soluble Tva ectodomain, sTva47 {Quail
(Coturnix coturnix) [TaxId: 9091]}
Length = 42
Score = 30.3 bits (68), Expect = 0.005
Identities = 16/43 (37%), Positives = 17/43 (39%), Gaps = 6/43 (13%)
Query: 11 CPPAEDGMERFACPTPDHMGRYRCIDDHVLCDGFIDCPTGEDE 53
CPP + F C P C LCDG DC G DE
Sbjct: 2 CPPGQ-----FRCSEPP-GAHGECYPQDWLCDGHPDCDDGRDE 38
>d1f5ya1 g.12.1.1 (A:1-44) Ligand-binding domain of low-density
lipoprotein receptor {Human (Homo sapiens) [TaxId:
9606]}
Length = 44
Score = 30.2 bits (68), Expect = 0.006
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 33 RCIDDHVLCDGFIDCPTGEDED 54
+CI +CDG +C G DE
Sbjct: 19 KCISYKWVCDGSAECQDGSDES 40
>d1ajja_ g.12.1.1 (A:) Ligand-binding domain of low-density
lipoprotein receptor {Human (Homo sapiens) [TaxId:
9606]}
Length = 37
Score = 30.1 bits (68), Expect = 0.007
Identities = 9/22 (40%), Positives = 10/22 (45%)
Query: 33 RCIDDHVLCDGFIDCPTGEDED 54
CI CDG DC DE+
Sbjct: 13 ECIHSSWRCDGGPDCKDKSDEE 34
>d1f8za_ g.12.1.1 (A:) Ligand-binding domain of low-density
lipoprotein receptor {Human (Homo sapiens) [TaxId:
9606]}
Length = 39
Score = 30.1 bits (68), Expect = 0.007
Identities = 8/21 (38%), Positives = 8/21 (38%)
Query: 33 RCIDDHVLCDGFIDCPTGEDE 53
CI CD DC DE
Sbjct: 14 NCIHGSRQCDREYDCKDMSDE 34
>d1itxa1 c.1.8.5 (A:33-337,A:410-451) Chitinase A1 {Bacillus
circulans [TaxId: 1397]}
Length = 347
Score = 29.4 bits (65), Expect = 0.060
Identities = 19/84 (22%), Positives = 34/84 (40%), Gaps = 5/84 (5%)
Query: 5 SDMYLECPPAEDGMERFACPTPDHMGRYRC----IDDHVLCDGFIDCPTGEDEDRQNFLL 60
S+ + + E FA D + +Y +D G +D + ED+QN+ L
Sbjct: 135 SNRFSDVAATAATREVFANSAVDFLRKYNFDGVDLDWEYPVSGGLDGNSKRPEDKQNYTL 194
Query: 61 E-NELCWGLSIYKALDKSTGLRSI 83
+++ L A+D L +I
Sbjct: 195 LLSKIREKLDAAGAVDGKKYLLTI 218
>d1nkra1 b.1.1.4 (A:6-101) Killer cell inhibitory receptor {Human
(Homo sapiens), p58-cl42 kir [TaxId: 9606]}
Length = 96
Score = 23.8 bits (51), Expect = 3.2
Identities = 6/10 (60%), Positives = 6/10 (60%)
Query: 25 TPDHMGRYRC 34
T D G YRC
Sbjct: 65 TQDLAGTYRC 74
>d2fyga1 g.86.1.1 (A:6-128) Nonstructural protein 10, NSP10 {SARS
coronavirus [TaxId: 227859]}
Length = 123
Score = 23.6 bits (51), Expect = 4.4
Identities = 12/40 (30%), Positives = 15/40 (37%), Gaps = 7/40 (17%)
Query: 33 RCIDDHVLCDG-------FIDCPTGEDEDRQNFLLENELC 65
RC DH G ++ PT D F L N +C
Sbjct: 73 RCHIDHPNPKGFCDLKGKYVQIPTTCANDPVGFTLRNTVC 112
>d1ugna2 b.1.1.4 (A:98-195) Ligand binding domain of lir-1 (ilt2)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 98
Score = 23.5 bits (50), Expect = 5.0
Identities = 4/10 (40%), Positives = 5/10 (50%)
Query: 25 TPDHMGRYRC 34
+P YRC
Sbjct: 68 SPSRRWWYRC 77
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.142 0.476
Gapped
Lambda K H
0.267 0.0461 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 436,078
Number of extensions: 18641
Number of successful extensions: 66
Number of sequences better than 10.0: 1
Number of HSP's gapped: 66
Number of HSP's successfully gapped: 26
Length of query: 106
Length of database: 2,407,596
Length adjustment: 66
Effective length of query: 40
Effective length of database: 1,501,416
Effective search space: 60056640
Effective search space used: 60056640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.5 bits)