BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12308
(251 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A1ZA47|ZASP_DROME PDZ and LIM domain protein Zasp OS=Drosophila melanogaster
GN=Zasp52 PE=1 SV=2
Length = 2194
Score = 38.1 bits (87), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 13/62 (20%)
Query: 138 RHVVNRPYNTPIGLYSEQNIVDSINHHY-------------KKTVVYDPAKSETFKALQE 184
+ +VN+ YNTP+G+YS+++I ++++ K Y +SE K L+E
Sbjct: 149 KSIVNKQYNTPVGIYSDESIAETLSAQAEVLAGGVLGVNFKKNEKEYQGDRSEVLKFLRE 208
Query: 185 EE 186
EE
Sbjct: 209 EE 210
>sp|Q9PU47|PDLI3_CHICK PDZ and LIM domain protein 3 OS=Gallus gallus GN=PDLIM3 PE=1 SV=1
Length = 315
Score = 35.4 bits (80), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 138 RHVVNRPYNTPIGLYSEQNIVDSINHHYKKTV 169
R VV+ YN+PIGLYS NI D+++ + +
Sbjct: 136 RQVVSSSYNSPIGLYSSGNIQDALHGQLRSLI 167
>sp|O70209|PDLI3_MOUSE PDZ and LIM domain protein 3 OS=Mus musculus GN=Pdlim3 PE=1 SV=1
Length = 316
Score = 35.4 bits (80), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 135 NPNRHVVNRPYNTPIGLYSEQNIVDSINHHYKKTV 169
+ R VV+ YN+PIGLYS NI D+++ + +
Sbjct: 133 DDKRQVVSASYNSPIGLYSTSNIQDALHGQLRGLI 167
>sp|Q3SYZ8|PDLI3_BOVIN PDZ and LIM domain protein 3 OS=Bos taurus GN=PDLIM3 PE=2 SV=1
Length = 316
Score = 35.0 bits (79), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 135 NPNRHVVNRPYNTPIGLYSEQNIVDSINHHYKKTV 169
+ R VV+ YN+PIGLYS NI D+++ + +
Sbjct: 133 DDKRQVVSASYNSPIGLYSTSNIQDALHGQLRGLI 167
>sp|P12806|EIF3B_PICAN Eukaryotic translation initiation factor 3 subunit B (Fragment)
OS=Pichia angusta GN=TIF32 PE=3 SV=1
Length = 220
Score = 33.1 bits (74), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 40/188 (21%), Positives = 73/188 (38%), Gaps = 19/188 (10%)
Query: 42 TCDTTRTAPVVNCRTVSKLTCRLFFQPYRTTPLVLPGAKVKKENPPTESYLRHHPNPMMR 101
CD AP + K+ +LF Q + + +P EN T+ +L +
Sbjct: 40 ICDGAPIAPEAKAPVLKKVLTKLFSQCGKVVDMFMP-----LENGQTKGFLIIELDSAAA 94
Query: 102 ASPGHYEFGNSELSYKQKVADSVLNRVIPDSQSNPNRHVVNRPYNTPIGLYSEQNIVDSI 161
A + +L K ++A +N+ +PD + ++ + P I +
Sbjct: 95 ADKAVKQLNGKKLDVKHRLA---VNK-LPDMEKYALNDNISEEFREP-------AIPEFR 143
Query: 162 NHHYKKTVVYDPAKSETFKALQEEELVGGHVQEIPQPVQPKVFAPPKTYTKGASPQPHPT 221
+H Y K+ + DP E F L + VG V + +QP+ P+ + AS + P
Sbjct: 144 SHGYLKSWLLDPNGREQF-MLHHHDTVG--VYWYKKNIQPEEVIEPRAHWTSASMKFSPK 200
Query: 222 SPHPNANF 229
+ + F
Sbjct: 201 GTYLFSFF 208
>sp|Q6LT69|LPXH_PHOPR UDP-2,3-diacylglucosamine hydrolase OS=Photobacterium profundum
GN=lpxH PE=3 SV=1
Length = 245
Score = 32.3 bits (72), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 48/98 (48%), Gaps = 10/98 (10%)
Query: 69 YRTTPLVLPGAKVKKENPPTESYLRHHPNPMMRASPGHYEFGNSELSYKQKVADSVLNRV 128
Y T L+L G + E+ E YLR+ R + F L+Y+QKV D + +
Sbjct: 106 YGTPTLILHGDTLCIED---EDYLRYRKRVHNRFIQ--WLFFCLPLTYRQKVGDKIRS-- 158
Query: 129 IPDSQSNPNR--HVVNRPYNTPIGLYSEQNIVDSINHH 164
S++N + +++ N + L +EQN++D I+ H
Sbjct: 159 -GSSKNNKEKTTSIMDVTPNEVVRLMAEQNVIDMIHGH 195
>sp|Q80X72|LRC15_MOUSE Leucine-rich repeat-containing protein 15 OS=Mus musculus GN=Lrrc15
PE=2 SV=1
Length = 579
Score = 32.0 bits (71), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 32/58 (55%)
Query: 142 NRPYNTPIGLYSEQNIVDSINHHYKKTVVYDPAKSETFKALQEEELVGGHVQEIPQPV 199
N+ N P+ L+ + N ++++ + V PA+ F L+E +L G +++ IP+ V
Sbjct: 111 NKLKNLPVRLFQDVNNLETLLLSNNQLVQIQPAQFSQFSNLKELQLYGNNLEYIPEGV 168
>sp|Q6GLJ6|PDLI3_XENLA PDZ and LIM domain protein 3 OS=Xenopus laevis GN=pdlim3 PE=2 SV=1
Length = 358
Score = 32.0 bits (71), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 10/67 (14%)
Query: 129 IPDSQSNPNRHVVNRPYNTPIGLYSEQNIVDSINHHY-----KKTVVYDPA-----KSET 178
+P P +V+ +NTP+ LYS+ NI++S+ +KT + DP +S+
Sbjct: 171 VPLEMELPGVKIVHAQFNTPMQLYSDDNIMESLQGQVSTILGEKTPMSDPVPPSVPQSDV 230
Query: 179 FKALQEE 185
+K L ++
Sbjct: 231 YKLLHDD 237
>sp|Q66HS7|PDLI3_RAT PDZ and LIM domain protein 3 OS=Rattus norvegicus GN=Pdlim3 PE=1
SV=2
Length = 362
Score = 32.0 bits (71), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 26/49 (53%)
Query: 129 IPDSQSNPNRHVVNRPYNTPIGLYSEQNIVDSINHHYKKTVVYDPAKSE 177
IP P +V+ +NTP+ LYS+ NI++++ + P+ SE
Sbjct: 173 IPLEMELPGVKIVHAQFNTPMQLYSDDNIMETLQGQVSTALGETPSMSE 221
>sp|Q6QGC0|PDLI3_PIG PDZ and LIM domain protein 3 OS=Sus scrofa GN=PDLIM3 PE=2 SV=1
Length = 365
Score = 32.0 bits (71), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 26/49 (53%)
Query: 129 IPDSQSNPNRHVVNRPYNTPIGLYSEQNIVDSINHHYKKTVVYDPAKSE 177
IP P +V+ +NTP+ LYS+ NI++++ + P+ SE
Sbjct: 174 IPLEMELPGVKIVHAQFNTPMQLYSDDNIMETLQGQVSTALGETPSMSE 222
>sp|Q53GG5|PDLI3_HUMAN PDZ and LIM domain protein 3 OS=Homo sapiens GN=PDLIM3 PE=1 SV=1
Length = 364
Score = 31.2 bits (69), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 25/49 (51%)
Query: 129 IPDSQSNPNRHVVNRPYNTPIGLYSEQNIVDSINHHYKKTVVYDPAKSE 177
IP P +V+ +NTP+ LYS+ NI++++ + P SE
Sbjct: 174 IPLEMELPGVKIVHAQFNTPMQLYSDDNIMETLQGQVSTALGETPLMSE 222
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.131 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 105,278,220
Number of Sequences: 539616
Number of extensions: 4737959
Number of successful extensions: 10492
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 10434
Number of HSP's gapped (non-prelim): 91
length of query: 251
length of database: 191,569,459
effective HSP length: 115
effective length of query: 136
effective length of database: 129,513,619
effective search space: 17613852184
effective search space used: 17613852184
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 60 (27.7 bits)