Query psy12308
Match_columns 251
No_of_seqs 36 out of 38
Neff 2.2
Searched_HMMs 13730
Date Fri Aug 16 15:44:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12308.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/12308hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1bm9a_ a.4.5.7 (A:) Replicati 42.9 5.6 0.00041 30.5 2.1 32 157-189 35-66 (120)
2 d1ea0a2 c.1.4.1 (A:423-1193) A 23.5 13 0.00094 35.3 1.5 44 74-122 520-564 (771)
3 d2nn6h2 b.84.4.2 (H:25-72) Rib 17.7 26 0.0019 22.7 1.6 12 74-85 2-13 (48)
4 d1b79a_ a.81.1.1 (A:) N-termin 15.8 27 0.002 23.5 1.4 37 159-195 23-59 (102)
5 d2piha1 a.281.1.1 (A:2-124) Un 15.0 50 0.0036 23.0 2.8 14 150-163 1-14 (123)
6 d1y29a_ g.3.6.2 (A:) Huwentoxi 14.4 25 0.0018 20.7 0.8 9 13-21 6-14 (28)
7 d1ofda2 c.1.4.1 (A:431-1239) A 14.0 31 0.0023 32.7 1.7 43 75-122 548-591 (809)
8 d2cw9a1 d.17.4.13 (A:270-451) 12.4 28 0.002 26.1 0.7 40 151-190 21-66 (182)
9 d2ba0a2 b.84.4.2 (A:2-52) Exos 10.5 33 0.0024 21.8 0.5 9 74-82 3-11 (51)
10 d1nnha_ d.104.1.1 (A:) Hypothe 7.4 2.1E+02 0.015 22.5 4.4 68 175-250 17-87 (293)
No 1
>d1bm9a_ a.4.5.7 (A:) Replication terminator protein (RTP) {Bacillus subtilis [TaxId: 1423]}
Probab=42.92 E-value=5.6 Score=30.47 Aligned_cols=32 Identities=19% Similarity=0.501 Sum_probs=24.9
Q ss_pred HHHHHhhhccCceecCCCchHHHHHHHHHHhhC
Q psy12308 157 IVDSINHHYKKTVVYDPAKSETFKALQEEELVG 189 (251)
Q Consensus 157 IaeTl~~Q~K~~v~YDpanSEtyRaLQEee~~g 189 (251)
+-|-|++-+ ++..|.|.-||+||+|+|-..+|
T Consensus 35 ~L~~Lr~eF-k~~Gy~P~hsEiYraLHeL~~dg 66 (120)
T d1bm9a_ 35 LLEVLRSEF-KEIGFKPNHTEVYRSLHELLDDG 66 (120)
T ss_dssp HHHHHHHHH-TTTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHH-HhcCCCCCHHHHHHHHHHHHHhh
Confidence 455666655 46789999999999999988644
No 2
>d1ea0a2 c.1.4.1 (A:423-1193) Alpha subunit of glutamate synthase, central and FMN domains {Azospirillum brasilense [TaxId: 192]}
Probab=23.54 E-value=13 Score=35.27 Aligned_cols=44 Identities=32% Similarity=0.338 Sum_probs=27.9
Q ss_pred cccCCCccccCCCCCccccccCCC-CcccCCCCCCCCCCchhHHHHHHHH
Q psy12308 74 LVLPGAKVKKENPPTESYLRHHPN-PMMRASPGHYEFGNSELSYKQKVAD 122 (251)
Q Consensus 74 LVlPGAKvkkd~~~tesYLrhhpN-P~~RAaPp~~d~~~~d~~mKQKvae 122 (251)
=.|||+||..+. ..+|+-|- =.+..-|+|||+.+.|. |.|+|.+
T Consensus 520 G~Lpg~KVt~~I----A~~R~~~~G~~~iSP~~h~di~sied-L~~~I~~ 564 (771)
T d1ea0a2 520 GQLPGFKVTEMI----ARLRHSTPGVMLISPPPHHDIYSIED-LAQLIYD 564 (771)
T ss_dssp CEECGGGCCHHH----HHHHTCCTTCCEECCSSCTTCSSHHH-HHHHHHH
T ss_pred cccccccCCHHH----HHhcCCCCCCCccCCCCCCCCCCHHH-HHHHHHH
Confidence 468888886542 34666443 34445588999876554 6777765
No 3
>d2nn6h2 b.84.4.2 (H:25-72) Ribosomal RNA-processing protein 4, RRP4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.69 E-value=26 Score=22.70 Aligned_cols=12 Identities=33% Similarity=0.825 Sum_probs=9.5
Q ss_pred cccCCCccccCC
Q psy12308 74 LVLPGAKVKKEN 85 (251)
Q Consensus 74 LVlPGAKvkkd~ 85 (251)
||+||+.+..|.
T Consensus 2 iv~PGe~It~~~ 13 (48)
T d2nn6h2 2 LVVPGDTITTDT 13 (48)
T ss_dssp BCCTTCBCCCCT
T ss_pred EecCCcEeecCC
Confidence 799999986553
No 4
>d1b79a_ a.81.1.1 (A:) N-terminal domain of DnaB helicase {Escherichia coli [TaxId: 562]}
Probab=15.80 E-value=27 Score=23.50 Aligned_cols=37 Identities=14% Similarity=0.242 Sum_probs=28.3
Q ss_pred HHHhhhccCceecCCCchHHHHHHHHHHhhCCCcccc
Q psy12308 159 DSINHHYKKTVVYDPAKSETFKALQEEELVGGHVQEI 195 (251)
Q Consensus 159 eTl~~Q~K~~v~YDpanSEtyRaLQEee~~g~~vQEV 195 (251)
+.+....+.+-+|++.+-..|+++.+--.+|..+..+
T Consensus 23 ~~v~~~l~~~dFy~~~h~~If~ai~~l~~~g~~iD~v 59 (102)
T d1b79a_ 23 DDVAERVVADDFYTRPHRHIFTEMARLQESGSPIDLI 59 (102)
T ss_dssp HHHHTTCCGGGSSSHHHHHHHHHHHHHHHTTCCCSHH
T ss_pred HHHHHhcCHHHhchHHHHHHHHHHHHHhccCCCCCHH
Confidence 3344446788899999999999999998877665543
No 5
>d2piha1 a.281.1.1 (A:2-124) Uncharacterized protein YmcA {Bacillus subtilis [TaxId: 1423]}
Probab=15.04 E-value=50 Score=23.00 Aligned_cols=14 Identities=36% Similarity=0.643 Sum_probs=11.4
Q ss_pred ccccchhHHHHHhh
Q psy12308 150 GLYSEQNIVDSINH 163 (251)
Q Consensus 150 GLYSd~NIaeTl~~ 163 (251)
.|||++||-|....
T Consensus 1 ~~~~~~~I~d~A~e 14 (123)
T d2piha1 1 TLYSKKDIVQQARN 14 (123)
T ss_dssp CCBCHHHHHHHHHH
T ss_pred CcCcHHHHHHHHHH
Confidence 38999999988654
No 6
>d1y29a_ g.3.6.2 (A:) Huwentoxin-X {Spider (Selenocosmia hainana) [TaxId: 209901]}
Probab=14.35 E-value=25 Score=20.73 Aligned_cols=9 Identities=56% Similarity=1.287 Sum_probs=6.9
Q ss_pred cccccCCCC
Q psy12308 13 SLPCYGLTE 21 (251)
Q Consensus 13 ~~~~~~~~~ 21 (251)
.-||||.|.
T Consensus 6 gkpcygatq 14 (28)
T d1y29a_ 6 GKPCYGATQ 14 (28)
T ss_dssp TCCCCTTCC
T ss_pred CCccccccc
Confidence 458999875
No 7
>d1ofda2 c.1.4.1 (A:431-1239) Alpha subunit of glutamate synthase, central and FMN domains {Synechocystis sp. [TaxId: 1143]}
Probab=14.01 E-value=31 Score=32.75 Aligned_cols=43 Identities=26% Similarity=0.302 Sum_probs=26.6
Q ss_pred ccCCCccccCCCCCccccccCCC-CcccCCCCCCCCCCchhHHHHHHHH
Q psy12308 75 VLPGAKVKKENPPTESYLRHHPN-PMMRASPGHYEFGNSELSYKQKVAD 122 (251)
Q Consensus 75 VlPGAKvkkd~~~tesYLrhhpN-P~~RAaPp~~d~~~~d~~mKQKvae 122 (251)
.|||+||..+. .-+||-|- =.+..-|+|||..+. .-|+|+|.+
T Consensus 548 ~Lpg~KVt~~I----A~~R~~~~G~~liSP~~h~diysi-edL~q~I~~ 591 (809)
T d1ofda2 548 QLPGKKVSEYI----AMLRRSKPGVTLISPPPHHDIYSI-EDLAQLIYD 591 (809)
T ss_dssp EECGGGCCHHH----HHHHTSCTTCCEECCSSCTTCSSH-HHHHHHHHH
T ss_pred ccchhhcCHHH----HhhcCCCCCCCCCCCCCCCCCCCH-HHHHHHHHH
Confidence 58888886442 24566442 234445888997654 456777776
No 8
>d2cw9a1 d.17.4.13 (A:270-451) Translocase of inner mitochondrial membrane TIMM44 (TIM44), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.38 E-value=28 Score=26.12 Aligned_cols=40 Identities=13% Similarity=0.345 Sum_probs=25.0
Q ss_pred cccchhHHHHHhhhccCceecC------CCchHHHHHHHHHHhhCC
Q psy12308 151 LYSEQNIVDSINHHYKKTVVYD------PAKSETFKALQEEELVGG 190 (251)
Q Consensus 151 LYSd~NIaeTl~~Q~K~~v~YD------panSEtyRaLQEee~~g~ 190 (251)
|+++.-++..|+.-.+....|| -++++.|.++++.=..|+
T Consensus 21 ~~~~~~~~~~l~~i~~~Dp~F~~~~Fl~gAk~~~~~~i~~A~~~gD 66 (182)
T d2cw9a1 21 LFSKTEMSEVLTEILRVDPAFDKDRFLKQCENDIIPNVLEAMISGE 66 (182)
T ss_dssp TTHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHTHHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHccC
Confidence 5666667777776544333443 345567888887776665
No 9
>d2ba0a2 b.84.4.2 (A:2-52) Exosome complex RNA-binding protein 1, ECR1 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=10.50 E-value=33 Score=21.84 Aligned_cols=9 Identities=44% Similarity=0.885 Sum_probs=7.4
Q ss_pred cccCCCccc
Q psy12308 74 LVLPGAKVK 82 (251)
Q Consensus 74 LVlPGAKvk 82 (251)
||+||..+-
T Consensus 3 iV~PGe~i~ 11 (51)
T d2ba0a2 3 IVLPGDLLS 11 (51)
T ss_dssp EECTTCEEE
T ss_pred EEcCCcEee
Confidence 799998873
No 10
>d1nnha_ d.104.1.1 (A:) Hypothetical protein PF1951 {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=7.45 E-value=2.1e+02 Score=22.51 Aligned_cols=68 Identities=6% Similarity=0.036 Sum_probs=36.6
Q ss_pred chHHHHHHHHHHhhCCCccccCCCCCCceecCCCCCCCCCCCCCCCCCCCCCCCcCCCcc-cccccchH--HHHHHhhh
Q psy12308 175 KSETFKALQEEELVGGHVQEIPQPVQPKVFAPPKTYTKGASPQPHPTSPHPNANFGMTTE-EIHQSNSF--KRLMHMVL 250 (251)
Q Consensus 175 nSEtyRaLQEee~~g~~vQEV~~PvqpkvftPpv~~n~~~~p~~~p~~~~~~vNs~m~~~-kIhQS~SF--KRLM~~VL 250 (251)
.|.+++++.|==. ..+.-||.+|+=+.+-.+ . .....-....+..++. -|.+ -++||.-| ||+|..-+
T Consensus 17 Rs~i~~~iR~ff~-~~gf~EV~tPil~~~~~~----~--~~~~~~~~~~~~~~~~-~~~~~yL~~SPel~lk~lla~g~ 87 (293)
T d1nnha_ 17 QTKILEYMTDFFV-KEGFKWLLPVIISPITDP----L--WPDPAGEGMEPAEVEI-YGVKMRLTHSMILHKQLAIAMGL 87 (293)
T ss_dssp HHHHHHHHHHHHH-HTTCEEECCCCEESCCCC----C--CSCTTCCCCCCCEEEE-TTEEEEECSCSHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHH-HCCCEEEcCCcccccCCC----C--CCccccCccccccccC-CCceeecccChhhhHHHHHHhcc
Confidence 5777777777665 568999998873322222 0 0000000011122233 3445 78999877 77876543
Done!