RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy12308
(251 letters)
>gnl|CDD|128974 smart00735, ZM, ZASP-like motif. Short motif (26 amino acids)
present in an alpha-actinin-binding protein, ZASP, and
similar molecules.
Length = 26
Score = 36.8 bits (86), Expect = 3e-04
Identities = 12/23 (52%), Positives = 19/23 (82%)
Query: 140 VVNRPYNTPIGLYSEQNIVDSIN 162
VV++ YN+PIGLYS +NI +++
Sbjct: 2 VVHKQYNSPIGLYSSENIAETLQ 24
>gnl|CDD|237863 PRK14949, PRK14949, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 944
Score = 31.2 bits (71), Expect = 0.57
Identities = 23/149 (15%), Positives = 34/149 (22%), Gaps = 13/149 (8%)
Query: 77 PGAKVKKENPPTESYLRHHPNPMMRASPGHYEFGNSELSYKQKVADSVLNRVIPDSQSNP 136
A K + PP+ + P + + S S P
Sbjct: 639 SSADRKPKTPPSRAPPASLSKPASSPDASQTSASFDLDPDFELATHQSVPEAALASGSAP 698
Query: 137 NRHVVNRPYNTPIGLYSEQNIVDSINHHYKKTVVYDPAKSETFKALQEEELVGGHVQEIP 196
V PY+ P + E V S N A E
Sbjct: 699 APPPVPDPYDRPP--WEEAPEVASANDGPNNAAE-GNLSESVEDASNSEL---------- 745
Query: 197 QPVQPKVFAPPKTYTKGASPQPHPTSPHP 225
Q V+ + P+ + SP
Sbjct: 746 QAVEQQATHQPQVQAEAQSPASTTALTQT 774
>gnl|CDD|223474 COG0397, COG0397, Uncharacterized conserved protein [Function
unknown].
Length = 488
Score = 30.8 bits (70), Expect = 0.67
Identities = 17/82 (20%), Positives = 30/82 (36%), Gaps = 15/82 (18%)
Query: 68 PYRTTPLVLPGAKVKKENPPTESYLRHHPNPMMRASPGHYEFGNSELSYK-------QKV 120
R LV G V++E+ + + R +P H FG E +++
Sbjct: 151 TTRALSLVETGEPVQREDEEPSAV-------LTRLAPSHIRFGTFERFAYRDRRDLLRQL 203
Query: 121 ADSVLNRVIPD-SQSNPNRHVV 141
AD V+ PD + + +
Sbjct: 204 ADHVIEHYFPDLADESERPYAA 225
>gnl|CDD|238817 cd01639, IMPase, IMPase, inositol monophosphatase and related
domains. A family of Mg++ dependent phosphatases,
inhibited by lithium, many of which may act on inositol
monophosphate substrate. They dephosphorylate inositol
phosphate to generate inositol, which may be recycled
into inositol lipids; in eukaryotes IMPase plays a vital
role in intracellular signaling. IMPase is one of the
proposed targets of Li+ therapy in manic-depressive
illness. This family contains some bacterial members of
the inositol monophosphatase family classified as
SuhB-like. E. coli SuhB has been suggested to
participate in posstranscriptional control of gene
expression, and its inositol monophosphatase activity
doesn't appear to be sufficient for its cellular
function. It has been proposed, that SuhB plays a role
in the biosynthesis of phosphatidylinositol in
mycobacteria.
Length = 244
Score = 28.7 bits (65), Expect = 2.5
Identities = 11/33 (33%), Positives = 14/33 (42%), Gaps = 8/33 (24%)
Query: 149 IGLYSEQNIVDSINHHYKKTVVYDPAKSETFKA 181
I L + V VVYDP ++E F A
Sbjct: 100 IALAVKGEPVVG--------VVYDPIRNELFTA 124
>gnl|CDD|172376 PRK13855, PRK13855, type IV secretion system protein VirB10;
Provisional.
Length = 376
Score = 28.7 bits (64), Expect = 2.9
Identities = 24/93 (25%), Positives = 36/93 (38%), Gaps = 10/93 (10%)
Query: 74 LVLPGAKVKKENPPTESYLRHHPNPMMRASPGHYEFGNSELSYKQKVADSVLN-RVIPDS 132
L+ G + KKEN P P+ M+ + + ++ A + P +
Sbjct: 46 LIWLGGRSKKENEPAP------PSTMIATNTKPFHPAPIDVPPDPPAAQEAVQPTAPPSA 99
Query: 133 QSNPNRHVVNRPYNTPIGLYS--EQNIVDSINH 163
QS P R+ RP TPI YS +Q H
Sbjct: 100 QSEPERNEP-RPEETPIFAYSSGDQGGSKRAGH 131
>gnl|CDD|219053 pfam06482, Endostatin, Collagenase NC10 and Endostatin. NC10
stands for Non-helical region 10 and is taken from human
COL15A1. A mutation in this region in human COL18A1 is
associated with an increased risk of prostrate cancer.
This domain is cleaved from the precursor and forms
endostatin. Endostatin is a key tumour suppressor and
has been used highly successfully to treat cancer. It is
a potent angiogenesis inhibitor. Endostatin also binds a
zinc ion near the N-terminus; this is likely to be of
structural rather than functional importance according
to.
Length = 291
Score = 28.6 bits (64), Expect = 3.2
Identities = 14/69 (20%), Positives = 24/69 (34%), Gaps = 8/69 (11%)
Query: 181 ALQEEELVGGHVQEIPQPVQPKVFAPPKTYTKGASPQPHPTSPHPNANFGMTTEEIHQSN 240
A Q +V + P P + P +PHP N +HQ
Sbjct: 60 ATQPPPVVLTPWSDPRLPDPPHLPDPQTH------SATAHRNPHPPLNSPARIAHVHQ-- 111
Query: 241 SFKRLMHMV 249
F+ ++H++
Sbjct: 112 DFQPVLHLI 120
>gnl|CDD|233358 TIGR01327, PGDH, D-3-phosphoglycerate dehydrogenase. This model
represents a long form of D-3-phosphoglycerate
dehydrogenase, the serA gene of one pathway of serine
biosynthesis. Shorter forms, scoring between trusted and
noise cutoff, include SerA from E. coli [Amino acid
biosynthesis, Serine family].
Length = 525
Score = 28.8 bits (65), Expect = 3.4
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
Query: 81 VKKENPPTESYLRHHPNPMMRASPGHYEFGNSELSYKQKVADSVLNRVIPDSQSNPNRHV 140
V ++ PPT++ L N + A+P H G S ++ VA V +V+ + P +
Sbjct: 255 VFEKEPPTDNPLFDLDN--VIATP-H--LGASTREAQENVATQVAEQVLDALKGLPVPNA 309
Query: 141 VNRPYNTP 148
VN P
Sbjct: 310 VNAPGIDA 317
>gnl|CDD|176702 cd08354, Glo_EDI_BRP_like_13, This conserved domain belongs to a
superfamily including the bleomycin resistance protein,
glyoxalase I, and type I ring-cleaving dioxygenases.
This protein family belongs to a conserved domain
superfamily that is found in a variety of structurally
related metalloproteins, including the bleomycin
resistance protein, glyoxalase I, and type I
ring-cleaving dioxygenases. A bound metal ion is
required for protein activities for the members of this
superfamily. A variety of metal ions have been found in
the catalytic centers of these proteins including
Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein
superfamily contains members with or without domain
swapping.
Length = 122
Score = 27.3 bits (61), Expect = 4.3
Identities = 11/37 (29%), Positives = 16/37 (43%)
Query: 203 VFAPPKTYTKGASPQPHPTSPHPNANFGMTTEEIHQS 239
+F P T T G PH S + F + EE+ +
Sbjct: 47 LFDPGATSTPGGEIPPHGGSGPGHFAFAIPAEELAEW 83
>gnl|CDD|143509 cd06842, PLPDE_III_Y4yA_like, Type III Pyridoxal 5-phosphate
(PLP)-Dependent Enzyme Y4yA. This subfamily is composed
of the hypothetical Rhizobium sp. protein Y4yA and
similar uncharacterized bacterial proteins. These
proteins are homologous to eukaryotic ornithine
decarboxylase (ODC) and diaminopimelate decarboxylase
(DapDC). ODC and DapDC are fold type III PLP-dependent
enzymes that contain an N-terminal PLP-binding
TIM-barrel domain and a C-terminal beta-sandwich domain,
similar to bacterial alanine racemases. ODC participates
in the formation of putrescine by catalyzing the
decarboxylation of ornithine, the first step in
polyamine biosynthesis. DapDC participates in the last
step of lysine biosynthesis, the conversion of
meso-2,6-diaminoheptanedioate to L-lysine. Proteins in
this subfamily may function as PLP-dependent
decarboxylases.
Length = 423
Score = 27.2 bits (61), Expect = 8.2
Identities = 8/35 (22%), Positives = 16/35 (45%)
Query: 58 SKLTCRLFFQPYRTTPLVLPGAKVKKENPPTESYL 92
+ + F + PL++P + + P E+YL
Sbjct: 333 NSFSACEFSSEFLVDPLLIPAPEPTTDGAPIEAYL 367
>gnl|CDD|112521 pfam03711, OKR_DC_1_C, Orn/Lys/Arg decarboxylase, C-terminal
domain.
Length = 137
Score = 26.4 bits (59), Expect = 9.4
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 72 TPLVLPGAKVKKENPPTESYLR 93
PLV+PG + +E+ P YL
Sbjct: 89 IPLVVPGERWTEESRPVLDYLL 110
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.314 0.131 0.399
Gapped
Lambda K H
0.267 0.0778 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 12,552,819
Number of extensions: 1123320
Number of successful extensions: 759
Number of sequences better than 10.0: 1
Number of HSP's gapped: 759
Number of HSP's successfully gapped: 19
Length of query: 251
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 156
Effective length of database: 6,723,972
Effective search space: 1048939632
Effective search space used: 1048939632
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 58 (26.0 bits)