RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy12308
         (251 letters)



>1lbv_A Fbpase/impase, fructose 1,6-bisphosphatase/inositol
           monophosphatase; dual activity, archaeal phosphatase,
           APO- form, hydrolase; 1.80A {Archaeoglobus fulgidus}
           SCOP: e.7.1.1 PDB: 1lbw_A 1lbx_A* 1lby_A* 1lbz_A*
          Length = 252

 Score = 27.7 bits (62), Expect = 3.2
 Identities = 5/33 (15%), Positives = 11/33 (33%), Gaps = 5/33 (15%)

Query: 149 IGLYSEQNIVDSINHHYKKTVVYDPAKSETFKA 181
           +       + D+         VY+ A  + + A
Sbjct: 101 LCFSYSDKLKDAF-----FGYVYNLATGDEYYA 128


>2p3n_A Inositol-1-monophosphatase; tetramer, hydrolase; 2.20A {Thermotoga
           maritima} PDB: 2p3v_A*
          Length = 256

 Score = 27.5 bits (62), Expect = 3.8
 Identities = 7/33 (21%), Positives = 11/33 (33%), Gaps = 8/33 (24%)

Query: 149 IGLYSEQNIVDSINHHYKKTVVYDPAKSETFKA 181
           +       +           VV+ PA +ET  A
Sbjct: 98  LAYVENGEVKLG--------VVHAPALNETLYA 122


>2q74_A Inositol-1-monophosphatase; alpha-beta-alpha-beta-alpha sandwich,
           hydrolase; 2.60A {Mycobacterium tuberculosis}
          Length = 299

 Score = 27.7 bits (62), Expect = 4.1
 Identities = 4/13 (30%), Positives = 5/13 (38%)

Query: 169 VVYDPAKSETFKA 181
            V D A    + A
Sbjct: 135 AVADVAARTVYSA 147


>1vdw_A Hypothetical protein PH1897; homodimer, riken structural
           genomics/proteomics initiative, RSGI, structural
           genomics, unknown function; 1.30A {Pyrococcus
           horikoshii} SCOP: e.7.1.1
          Length = 254

 Score = 27.2 bits (61), Expect = 4.8
 Identities = 2/13 (15%), Positives = 6/13 (46%)

Query: 169 VVYDPAKSETFKA 181
            +Y+P     ++ 
Sbjct: 115 FIYEPIVERLYEG 127


>1g0h_A Inositol monophosphatase; homodimer, complexed with Ca2+ and I-1-P,
           hydrolase; HET: IPD; 2.30A {Methanocaldococcus
           jannaschii} SCOP: e.7.1.1 PDB: 1dk4_A* 1g0i_A*
          Length = 252

 Score = 27.2 bits (61), Expect = 5.1
 Identities = 2/13 (15%), Positives = 6/13 (46%)

Query: 169 VVYDPAKSETFKA 181
           + Y+      ++A
Sbjct: 112 LTYEFLTKSFYEA 124


>3lul_A 4-amino-4-deoxychorismate lyase; structural genomi center for
           structural genomics, JCSG, protein structure INI PSI-2,
           pyridoxal phosphate; HET: MSE LLP; 1.78A {Legionella
           pneumophila}
          Length = 272

 Score = 27.1 bits (61), Expect = 5.8
 Identities = 5/30 (16%), Positives = 13/30 (43%), Gaps = 5/30 (16%)

Query: 78  GAKVKKENPPTESYLRHHPNPMMRASPGHY 107
             ++      + ++LR   NP+ +    +Y
Sbjct: 121 PVRLI-----SINWLRDKANPLYQLKSVNY 145


>3lv0_A Extragenic suppressor protein SUHB; niaid, seattle structural
           genomics center for infectious disease, ssgcid, CAT
           scratch disease; 1.85A {Bartonella henselae} PDB: 3luz_A
          Length = 267

 Score = 26.7 bits (60), Expect = 7.0
 Identities = 11/33 (33%), Positives = 14/33 (42%), Gaps = 8/33 (24%)

Query: 149 IGLYSEQNIVDSINHHYKKTVVYDPAKSETFKA 181
           I L S+  IV          V+Y+P   E F A
Sbjct: 109 IALESQGKIVAG--------VIYNPINDELFTA 133


>2qfl_A Inositol-1-monophosphatase; impase extragenic suppressor,
           dimerization, hydrolase; 1.90A {Escherichia coli}
          Length = 267

 Score = 26.7 bits (60), Expect = 7.7
 Identities = 8/13 (61%), Positives = 10/13 (76%)

Query: 169 VVYDPAKSETFKA 181
           VVYDP ++E F A
Sbjct: 115 VVYDPMRNELFTA 127


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.314    0.131    0.399 

Gapped
Lambda     K      H
   0.267   0.0524    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,774,755
Number of extensions: 207520
Number of successful extensions: 433
Number of sequences better than 10.0: 1
Number of HSP's gapped: 433
Number of HSP's successfully gapped: 14
Length of query: 251
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 160
Effective length of database: 4,160,982
Effective search space: 665757120
Effective search space used: 665757120
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 56 (25.8 bits)