BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12309
(152 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3INM|A Chain A, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent
Isocitrate Dehydrogenase R132h Mutant In Complex With
Nadph, Alpha-Ketoglutarate And Calcium(2+)
pdb|3INM|B Chain B, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent
Isocitrate Dehydrogenase R132h Mutant In Complex With
Nadph, Alpha-Ketoglutarate And Calcium(2+)
pdb|3INM|C Chain C, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent
Isocitrate Dehydrogenase R132h Mutant In Complex With
Nadph, Alpha-Ketoglutarate And Calcium(2+)
Length = 425
Score = 227 bits (579), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 101/127 (79%), Positives = 113/127 (88%)
Query: 14 FGKPTYNVALQKKWPLYLSTKNTILKKYDGHFKDIFQEVYEKNYKSQFEQAKIWYEHRLI 73
F ++ +AL K WPLYLSTKNTILKKYDG FKDIFQE+Y+K YKSQFE KIWYEHRLI
Sbjct: 192 FAHSSFQMALSKGWPLYLSTKNTILKKYDGRFKDIFQEIYDKQYKSQFEAQKIWYEHRLI 251
Query: 74 DDMVAQALKGNGGFVWACKNYDGDVQSDIVAQGYGSLGLMTSILMCPDGKTIESEAAHGT 133
DDMVAQA+K GGF+WACKNYDGDVQSD VAQGYGSLG+MTS+L+CPDGKT+E+EAAHGT
Sbjct: 252 DDMVAQAMKSEGGFIWACKNYDGDVQSDSVAQGYGSLGMMTSVLVCPDGKTVEAEAAHGT 311
Query: 134 VTRHYRF 140
VTRHYR
Sbjct: 312 VTRHYRM 318
>pdb|3MAS|B Chain B, Crystal Structure Of Heterodimeric R132h Mutant Of Human
Cytosolic Nadp(+)-Dependent Isocitrate Dehydrogenase In
Complex With Nadp And Isocitrate
Length = 419
Score = 227 bits (578), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 101/127 (79%), Positives = 113/127 (88%)
Query: 14 FGKPTYNVALQKKWPLYLSTKNTILKKYDGHFKDIFQEVYEKNYKSQFEQAKIWYEHRLI 73
F ++ +AL K WPLYLSTKNTILKKYDG FKDIFQE+Y+K YKSQFE KIWYEHRLI
Sbjct: 197 FAHSSFQMALSKGWPLYLSTKNTILKKYDGRFKDIFQEIYDKQYKSQFEAQKIWYEHRLI 256
Query: 74 DDMVAQALKGNGGFVWACKNYDGDVQSDIVAQGYGSLGLMTSILMCPDGKTIESEAAHGT 133
DDMVAQA+K GGF+WACKNYDGDVQSD VAQGYGSLG+MTS+L+CPDGKT+E+EAAHGT
Sbjct: 257 DDMVAQAMKSEGGFIWACKNYDGDVQSDSVAQGYGSLGMMTSVLVCPDGKTVEAEAAHGT 316
Query: 134 VTRHYRF 140
VTRHYR
Sbjct: 317 VTRHYRM 323
>pdb|3MAP|A Chain A, Crystal Structure Of Homodimeric R132h Mutant Of Human
Cytosolic Nadp(+)-Dependent Isocitrate Dehydrogenase In
Complex With Nadp And Isocitrate
pdb|3MAP|B Chain B, Crystal Structure Of Homodimeric R132h Mutant Of Human
Cytosolic Nadp(+)-Dependent Isocitrate Dehydrogenase In
Complex With Nadp And Isocitrate
pdb|3MAR|A Chain A, Crystal Structure Of Homodimeric R132h Mutant Of Human
Cytosolic Nadp(+)-Dependent Isocitrate Dehydrogenase In
Complex With Nadp
pdb|3MAR|B Chain B, Crystal Structure Of Homodimeric R132h Mutant Of Human
Cytosolic Nadp(+)-Dependent Isocitrate Dehydrogenase In
Complex With Nadp
pdb|3MAS|A Chain A, Crystal Structure Of Heterodimeric R132h Mutant Of Human
Cytosolic Nadp(+)-Dependent Isocitrate Dehydrogenase In
Complex With Nadp And Isocitrate
Length = 422
Score = 227 bits (578), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 101/127 (79%), Positives = 113/127 (88%)
Query: 14 FGKPTYNVALQKKWPLYLSTKNTILKKYDGHFKDIFQEVYEKNYKSQFEQAKIWYEHRLI 73
F ++ +AL K WPLYLSTKNTILKKYDG FKDIFQE+Y+K YKSQFE KIWYEHRLI
Sbjct: 192 FAHSSFQMALSKGWPLYLSTKNTILKKYDGRFKDIFQEIYDKQYKSQFEAQKIWYEHRLI 251
Query: 74 DDMVAQALKGNGGFVWACKNYDGDVQSDIVAQGYGSLGLMTSILMCPDGKTIESEAAHGT 133
DDMVAQA+K GGF+WACKNYDGDVQSD VAQGYGSLG+MTS+L+CPDGKT+E+EAAHGT
Sbjct: 252 DDMVAQAMKSEGGFIWACKNYDGDVQSDSVAQGYGSLGMMTSVLVCPDGKTVEAEAAHGT 311
Query: 134 VTRHYRF 140
VTRHYR
Sbjct: 312 VTRHYRM 318
>pdb|1T09|A Chain A, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent
Isocitrate Dehydrogenase In Complex Nadp
pdb|1T09|B Chain B, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent
Isocitrate Dehydrogenase In Complex Nadp
pdb|1T0L|A Chain A, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent
Isocitrate Dehydrogenase In Complex With Nadp,
Isocitrate, And Calcium(2+)
pdb|1T0L|B Chain B, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent
Isocitrate Dehydrogenase In Complex With Nadp,
Isocitrate, And Calcium(2+)
pdb|1T0L|C Chain C, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent
Isocitrate Dehydrogenase In Complex With Nadp,
Isocitrate, And Calcium(2+)
pdb|1T0L|D Chain D, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent
Isocitrate Dehydrogenase In Complex With Nadp,
Isocitrate, And Calcium(2+)
Length = 414
Score = 227 bits (578), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 101/127 (79%), Positives = 113/127 (88%)
Query: 14 FGKPTYNVALQKKWPLYLSTKNTILKKYDGHFKDIFQEVYEKNYKSQFEQAKIWYEHRLI 73
F ++ +AL K WPLYLSTKNTILKKYDG FKDIFQE+Y+K YKSQFE KIWYEHRLI
Sbjct: 192 FAHSSFQMALSKGWPLYLSTKNTILKKYDGRFKDIFQEIYDKQYKSQFEAQKIWYEHRLI 251
Query: 74 DDMVAQALKGNGGFVWACKNYDGDVQSDIVAQGYGSLGLMTSILMCPDGKTIESEAAHGT 133
DDMVAQA+K GGF+WACKNYDGDVQSD VAQGYGSLG+MTS+L+CPDGKT+E+EAAHGT
Sbjct: 252 DDMVAQAMKSEGGFIWACKNYDGDVQSDSVAQGYGSLGMMTSVLVCPDGKTVEAEAAHGT 311
Query: 134 VTRHYRF 140
VTRHYR
Sbjct: 312 VTRHYRM 318
>pdb|1LWD|A Chain A, Crystal Structure Of Nadp-Dependent Isocitrate
Dehydrogenase From Porcine Heart Mitochondria
pdb|1LWD|B Chain B, Crystal Structure Of Nadp-Dependent Isocitrate
Dehydrogenase From Porcine Heart Mitochondria
Length = 413
Score = 222 bits (565), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 99/126 (78%), Positives = 114/126 (90%)
Query: 14 FGKPTYNVALQKKWPLYLSTKNTILKKYDGHFKDIFQEVYEKNYKSQFEQAKIWYEHRLI 73
F + A+QKKWPLY+STKNTILK YDG FKDIFQE++EK+YK+ F++ KIWYEHRLI
Sbjct: 192 FAHSCFQYAIQKKWPLYMSTKNTILKAYDGRFKDIFQEIFEKHYKTDFDKYKIWYEHRLI 251
Query: 74 DDMVAQALKGNGGFVWACKNYDGDVQSDIVAQGYGSLGLMTSILMCPDGKTIESEAAHGT 133
DDMVAQ LK +GGFVWACKNYDGDVQSDI+AQG+GSLGLMTS+L+CPDGKTIE+EAAHGT
Sbjct: 252 DDMVAQVLKSSGGFVWACKNYDGDVQSDILAQGFGSLGLMTSVLVCPDGKTIEAEAAHGT 311
Query: 134 VTRHYR 139
VTRHYR
Sbjct: 312 VTRHYR 317
>pdb|2CMJ|A Chain A, Crystal Structure Of Mouse Cytosolic Isocitrate
Dehydrogenase
pdb|2CMJ|B Chain B, Crystal Structure Of Mouse Cytosolic Isocitrate
Dehydrogenase
pdb|2CMV|A Chain A, Crystal Structure Of Mouse Cytosolic Isocitrate
Dehydrogenase Complexed With Cadmium And Citrate
pdb|2CMV|B Chain B, Crystal Structure Of Mouse Cytosolic Isocitrate
Dehydrogenase Complexed With Cadmium And Citrate
Length = 410
Score = 221 bits (562), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 99/127 (77%), Positives = 111/127 (87%)
Query: 14 FGKPTYNVALQKKWPLYLSTKNTILKKYDGHFKDIFQEVYEKNYKSQFEQAKIWYEHRLI 73
F ++ +AL K WPLYLSTKNTILKKYDG FKDIFQE+Y+K YKSQFE I YEHRLI
Sbjct: 189 FAHSSFQMALSKGWPLYLSTKNTILKKYDGRFKDIFQEIYDKKYKSQFEAQNICYEHRLI 248
Query: 74 DDMVAQALKGNGGFVWACKNYDGDVQSDIVAQGYGSLGLMTSILMCPDGKTIESEAAHGT 133
DDMVAQA+K GGF+WACKNYDGDVQSD VAQGYGSLG+MTS+L+CPDGKT+E+EAAHGT
Sbjct: 249 DDMVAQAMKSEGGFIWACKNYDGDVQSDSVAQGYGSLGMMTSVLICPDGKTVEAEAAHGT 308
Query: 134 VTRHYRF 140
VTRHYR
Sbjct: 309 VTRHYRM 315
>pdb|2QFV|A Chain A, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)-Dependent Isocitrate Dehydrogenase
In Complex With Nadp(+)
pdb|2QFV|B Chain B, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)-Dependent Isocitrate Dehydrogenase
In Complex With Nadp(+)
pdb|2QFV|C Chain C, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)-Dependent Isocitrate Dehydrogenase
In Complex With Nadp(+)
pdb|2QFV|D Chain D, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)-Dependent Isocitrate Dehydrogenase
In Complex With Nadp(+)
pdb|2QFW|A Chain A, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Isocitrate
pdb|2QFW|B Chain B, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Isocitrate
pdb|2QFW|C Chain C, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Isocitrate
pdb|2QFW|D Chain D, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Isocitrate
pdb|2QFW|E Chain E, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Isocitrate
pdb|2QFW|F Chain F, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Isocitrate
pdb|2QFX|A Chain A, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Nadph, A- Ketoglutarate
And Ca(2+)
pdb|2QFX|B Chain B, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Nadph, A- Ketoglutarate
And Ca(2+)
pdb|2QFX|C Chain C, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Nadph, A- Ketoglutarate
And Ca(2+)
pdb|2QFX|D Chain D, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Nadph, A- Ketoglutarate
And Ca(2+)
pdb|2QFX|E Chain E, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Nadph, A- Ketoglutarate
And Ca(2+)
pdb|2QFX|F Chain F, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Nadph, A- Ketoglutarate
And Ca(2+)
pdb|2QFY|A Chain A, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With A-ketoglutarate
pdb|2QFY|B Chain B, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With A-ketoglutarate
pdb|2QFY|C Chain C, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With A-ketoglutarate
pdb|2QFY|D Chain D, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With A-ketoglutarate
pdb|2QFY|E Chain E, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With A-ketoglutarate
pdb|2QFY|F Chain F, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With A-ketoglutarate
Length = 427
Score = 202 bits (513), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 96/126 (76%), Positives = 106/126 (84%)
Query: 14 FGKPTYNVALQKKWPLYLSTKNTILKKYDGHFKDIFQEVYEKNYKSQFEQAKIWYEHRLI 73
F ++ +A+ KK L+LSTKNTILKKYDG FKDIFQEVYE YKS+FEQ I YEHRLI
Sbjct: 208 FAHSSFKLAIDKKLNLFLSTKNTILKKYDGRFKDIFQEVYEAQYKSKFEQLGIHYEHRLI 267
Query: 74 DDMVAQALKGNGGFVWACKNYDGDVQSDIVAQGYGSLGLMTSILMCPDGKTIESEAAHGT 133
DDMVAQ +K GGF+ A KNYDGDVQSDIVAQG+GSLGLMTSIL+ PDGKT ESEAAHGT
Sbjct: 268 DDMVAQMIKSKGGFIMALKNYDGDVQSDIVAQGFGSLGLMTSILVTPDGKTFESEAAHGT 327
Query: 134 VTRHYR 139
VTRHYR
Sbjct: 328 VTRHYR 333
>pdb|3US8|A Chain A, Crystal Structure Of An Isocitrate Dehydrogenase From
Sinorhizobium Meliloti 1021
pdb|3US8|B Chain B, Crystal Structure Of An Isocitrate Dehydrogenase From
Sinorhizobium Meliloti 1021
Length = 427
Score = 201 bits (510), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 90/126 (71%), Positives = 109/126 (86%)
Query: 14 FGKPTYNVALQKKWPLYLSTKNTILKKYDGHFKDIFQEVYEKNYKSQFEQAKIWYEHRLI 73
F + ++N LQ+K P+YLSTKNTILK YDG FKDIFQ+V+++ + +QF+ K+WYEHRLI
Sbjct: 213 FARASFNYGLQRKVPVYLSTKNTILKAYDGRFKDIFQKVFDEEFAAQFKAEKLWYEHRLI 272
Query: 74 DDMVAQALKGNGGFVWACKNYDGDVQSDIVAQGYGSLGLMTSILMCPDGKTIESEAAHGT 133
DD VA ALK +GG+VWACKNYDGDVQSDIVAQG+GSLGL TS+L PDGKT+E+EAAHGT
Sbjct: 273 DDXVASALKWSGGYVWACKNYDGDVQSDIVAQGFGSLGLXTSVLXTPDGKTVEAEAAHGT 332
Query: 134 VTRHYR 139
VTRHYR
Sbjct: 333 VTRHYR 338
>pdb|4HCX|A Chain A, Structure Of Icdh-1 From M.tuberculosis Complexed With
Nadph & Mn2+
pdb|4HCX|B Chain B, Structure Of Icdh-1 From M.tuberculosis Complexed With
Nadph & Mn2+
Length = 409
Score = 199 bits (505), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 91/126 (72%), Positives = 105/126 (83%)
Query: 14 FGKPTYNVALQKKWPLYLSTKNTILKKYDGHFKDIFQEVYEKNYKSQFEQAKIWYEHRLI 73
F + +++ L KWP+YLSTKNTILK YDG FKD F+ VYE+ +K+QFE A + YEHRLI
Sbjct: 195 FARASFSYGLNAKWPVYLSTKNTILKAYDGMFKDEFERVYEEEFKAQFEAAGLTYEHRLI 254
Query: 74 DDMVAQALKGNGGFVWACKNYDGDVQSDIVAQGYGSLGLMTSILMCPDGKTIESEAAHGT 133
DDMVA LK GG+VWACKNYDGDVQSD VAQGYGSLGLMTS+LM DGKT+E+EAAHGT
Sbjct: 255 DDMVAACLKWEGGYVWACKNYDGDVQSDTVAQGYGSLGLMTSVLMTADGKTVEAEAAHGT 314
Query: 134 VTRHYR 139
VTRHYR
Sbjct: 315 VTRHYR 320
>pdb|4AOY|A Chain A, Open Ctidh. The Complex Structures Of Isocitrate
Dehydrogenase From Clostridium Thermocellum And
Desulfotalea Psychrophila, Support A New Active Site
Locking Mechanism
pdb|4AOY|B Chain B, Open Ctidh. The Complex Structures Of Isocitrate
Dehydrogenase From Clostridium Thermocellum And
Desulfotalea Psychrophila, Support A New Active Site
Locking Mechanism
pdb|4AOY|C Chain C, Open Ctidh. The Complex Structures Of Isocitrate
Dehydrogenase From Clostridium Thermocellum And
Desulfotalea Psychrophila, Support A New Active Site
Locking Mechanism
pdb|4AOY|D Chain D, Open Ctidh. The Complex Structures Of Isocitrate
Dehydrogenase From Clostridium Thermocellum And
Desulfotalea Psychrophila, Support A New Active Site
Locking Mechanism
pdb|4AOU|A Chain A, Ctidh Bound To Nadp. The Complex Structures Of Isocitrate
Dehydrogenase From Clostridium Thermocellum And
Desulfotalea Psychrophila, Support A New Active Site
Locking Mechanism
Length = 402
Score = 152 bits (385), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 73/125 (58%), Positives = 89/125 (71%), Gaps = 1/125 (0%)
Query: 14 FGKPTYNVALQKKWPLYLSTKNTILKKYDGHFKDIFQEVYEKNYKSQFEQAKIWYEHRLI 73
F + +N AL L+ STK+TI K YD FKDIFQE+YE YK +FE + Y + LI
Sbjct: 190 FARACFNYALDMNQDLWFSTKDTISKTYDHRFKDIFQEIYENEYKEKFEAKNLQYFYTLI 249
Query: 74 DDMVAQALKGNGGFVWACKNYDGDVQSDIVAQGYGSLGLMTSILMCPDGKTIESEAAHGT 133
DD VA+ ++ GG VWACKNYDGDV SD+VA +GSL +MTS+L+ PDGK E EAAHGT
Sbjct: 250 DDAVARIIRSEGGMVWACKNYDGDVMSDMVASAFGSLAMMTSVLVSPDGK-YEFEAAHGT 308
Query: 134 VTRHY 138
VTRHY
Sbjct: 309 VTRHY 313
>pdb|1ZOR|A Chain A, Isocitrate Dehydrogenase From The Hyperthermophile
Thermotoga Maritima
pdb|1ZOR|B Chain B, Isocitrate Dehydrogenase From The Hyperthermophile
Thermotoga Maritima
Length = 399
Score = 136 bits (343), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 70/143 (48%), Positives = 95/143 (66%), Gaps = 3/143 (2%)
Query: 8 ESTFWIFGKPTYNVALQKKWPLYLSTKNTILKKYDGHFKDIFQEVYEKNYKSQFEQAKIW 67
E + F + N A+ +K ++ +TK+TI K Y +FKDIFQE +K K + E+A +
Sbjct: 182 EKSIRSFAQSCINYAISEKVDIWFATKDTISKVYHAYFKDIFQEEVDKR-KEELEKAGVN 240
Query: 68 YEHRLIDDMVAQALKGNGGFVWACKNYDGDVQSDIVAQGYGSLGLMTSILMCPDGKTIES 127
Y + LIDD AQ L+ GG +WAC NY+GD+ SD++A G+GSLGLMTS+L+ PDG E
Sbjct: 241 YRYMLIDDAAAQILRSEGGMLWACMNYEGDIMSDMIASGFGSLGLMTSVLVSPDG-VYEF 299
Query: 128 EAAHGTVTRH-YRFLGINDINTN 149
EAAHGTV RH YR+L +TN
Sbjct: 300 EAAHGTVRRHYYRYLKGEKTSTN 322
>pdb|2UXQ|A Chain A, Isocitrate Dehydrogenase From The Psychrophilic Bacterium
Desulfotalea Psychrophila: Biochemical Properties And
Crystal Structure Analysis
pdb|2UXQ|B Chain B, Isocitrate Dehydrogenase From The Psychrophilic Bacterium
Desulfotalea Psychrophila: Biochemical Properties And
Crystal Structure Analysis
pdb|2UXQ|C Chain C, Isocitrate Dehydrogenase From The Psychrophilic Bacterium
Desulfotalea Psychrophila: Biochemical Properties And
Crystal Structure Analysis
pdb|2UXQ|D Chain D, Isocitrate Dehydrogenase From The Psychrophilic Bacterium
Desulfotalea Psychrophila: Biochemical Properties And
Crystal Structure Analysis
pdb|2UXR|A Chain A, Complex With Isocitrate And The Protein Isocitrate
Dehydrogenase From The Psychrophilic Bacterium
Desulfotalea Psychrophila
pdb|2UXR|B Chain B, Complex With Isocitrate And The Protein Isocitrate
Dehydrogenase From The Psychrophilic Bacterium
Desulfotalea Psychrophila
pdb|4AOV|A Chain A, Dpidh-Nadp. The Complex Structures Of Isocitrate
Dehydrogenase From Clostridium Thermocellum And
Desulfotalea Psychrophila, Support A New Active Site
Locking Mechanism
Length = 402
Score = 132 bits (331), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 63/125 (50%), Positives = 87/125 (69%), Gaps = 1/125 (0%)
Query: 14 FGKPTYNVALQKKWPLYLSTKNTILKKYDGHFKDIFQEVYEKNYKSQFEQAKIWYEHRLI 73
F + + +L +K + +TK+TI K+YD FK IF+E++ + YK +F A I Y + LI
Sbjct: 189 FARACFEYSLDQKIDCWFATKDTISKQYDQRFKIIFEEIFAQEYKEKFAAAGIEYFYTLI 248
Query: 74 DDMVAQALKGNGGFVWACKNYDGDVQSDIVAQGYGSLGLMTSILMCPDGKTIESEAAHGT 133
DD+VA+ +K GG +WACKNYDGDV SD+VA +GSL +M+S+L+ P G E EAAHGT
Sbjct: 249 DDVVARMMKTEGGMLWACKNYDGDVMSDMVASAFGSLAMMSSVLVSPYG-YFEYEAAHGT 307
Query: 134 VTRHY 138
V RHY
Sbjct: 308 VQRHY 312
>pdb|3VML|A Chain A, Chimera 3-Isopropylmalate Dehydrogenase Between Shewanella
Oneidensis Mr-1 (O) And Shewanella Benthica Db21 Mt-2
(M) From N-Terminal: 20% O Middle 70% M Residual 10% O
Length = 375
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 48 IFQEVYEKNYKSQFEQAKIWYEHRLIDDMVAQALKGNGGF-VWACKNYDGDVQSDIVAQG 106
+++EV E+ K + + EH ID+ Q L+ F V C N GD+ SD +A
Sbjct: 213 LWREVVEEVAK---DYPDVELEHIYIDNATMQLLRRPNEFDVMLCSNLFGDIVSDEIAML 269
Query: 107 YGSLGLMTSILMCPDG 122
GS+GL+ SI M G
Sbjct: 270 TGSMGLLASISMNSQG 285
>pdb|3VMK|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Benthica
Db21 Mt-2
pdb|3VMK|B Chain B, 3-Isopropylmalate Dehydrogenase From Shewanella Benthica
Db21 Mt-2
Length = 375
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 4/72 (5%)
Query: 48 IFQEVYEKNYKSQFEQAKIWYEHRLIDDMVAQALKGNGGF-VWACKNYDGDVQSDIVAQG 106
+++EV E+ K + + EH ID+ Q L+ F V C N GD+ SD +A
Sbjct: 213 LWREVVEEVAK---DYPDVELEHIYIDNATMQLLRRPNEFDVMLCSNLFGDIVSDEIAML 269
Query: 107 YGSLGLMTSILM 118
GS+GL+ SI M
Sbjct: 270 TGSMGLLASISM 281
>pdb|3U1H|A Chain A, Crystal Structure Of Ipmdh From The Last Common Ancestor
Of Bacillus
pdb|3U1H|B Chain B, Crystal Structure Of Ipmdh From The Last Common Ancestor
Of Bacillus
Length = 390
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 56/119 (47%), Gaps = 10/119 (8%)
Query: 16 KPTYNVALQKKWPLYLSTKNTILKKYDGHFKDIFQEVYEKNYKSQFEQAKIWYEHRLIDD 75
+ + +AL +K + K +L+ +++EV E+ K E + EH L+D+
Sbjct: 193 RKAFELALTRKKKVTSVDKANVLES-----SRLWREVAEEVAK---EYPDVELEHMLVDN 244
Query: 76 MVAQALKGNGGF-VWACKNYDGDVQSDIVAQGYGSLGLMTSILMCPDGKTIESEAAHGT 133
Q ++ F V +N GD+ SD + GSLG++ S + DG + E HG+
Sbjct: 245 AAMQLIRNPRQFDVIVTENMFGDILSDEASMITGSLGMLPSASLSTDGLGL-YEPVHGS 302
>pdb|3VKZ|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1 At Atmospheric Pressure
pdb|3VL2|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1 At 160 Mpa
pdb|3VL3|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1 At 340 Mpa
pdb|3VL4|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1 At 410 Mpa
pdb|3VL6|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1 At 580 Mpa
pdb|3VL7|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1 At 650 Mpa
pdb|3VMJ|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1
Length = 375
Score = 36.2 bits (82), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 66 IWYEHRLIDDMVAQALKGNGGF-VWACKNYDGDVQSDIVAQGYGSLGLMTSILM 118
+ EH ID+ Q L+ F V C N GD+ SD +A GS+GL++S M
Sbjct: 228 VELEHIYIDNATMQLLRRPDEFDVMLCSNLFGDILSDEIAMLTGSMGLLSSASM 281
>pdb|2D1C|A Chain A, Crystal Structure Of Tt0538 Protein From Thermus
Thermophilus Hb8
pdb|2D1C|B Chain B, Crystal Structure Of Tt0538 Protein From Thermus
Thermophilus Hb8
Length = 496
Score = 35.8 bits (81), Expect = 0.009, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 55/120 (45%), Gaps = 13/120 (10%)
Query: 29 LYLSTKNTILKKYDGHFKDIFQEVYEKNYKSQFEQAKIWYEHRLIDDMVAQALKGNGGF- 87
++ +TK+ I+K +G K F++V + E I H ++D+ Q +K F
Sbjct: 186 VHCATKSNIMKLAEGTLKRAFEQVAQ-------EYPDIEAVHIIVDNAAHQLVKRPEQFE 238
Query: 88 VWACKNYDGDVQSDIVAQGYGSLGLMTSILMCPDGKTIESEAAHGTVTRHYRFLGINDIN 147
V N +GD+ SD+ + G LG S + + EA HG+ ++ G N IN
Sbjct: 239 VIVTTNMNGDILSDLTSGLIGGLGFAPSANIGNEVAIF--EAVHGSAP---KYAGKNVIN 293
>pdb|1WPW|A Chain A, Crystal Structure Of Ipmdh From Sulfolobus Tokodaii
pdb|1WPW|B Chain B, Crystal Structure Of Ipmdh From Sulfolobus Tokodaii
Length = 336
Score = 33.5 bits (75), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 44/103 (42%), Gaps = 10/103 (9%)
Query: 14 FGKPTYNVALQKKWPLYLSTKNTILKKYDGHFKDIFQEVYEKNYKSQFEQAKIWYEHRLI 73
K N AL+++ + K +++ DG F + + V + K+ Y +
Sbjct: 149 IAKVGLNFALRRRKKVTCVHKANVMRITDGLFAEACRSVL---------KGKVEYSEMYV 199
Query: 74 DDMVAQALKGNGGF-VWACKNYDGDVQSDIVAQGYGSLGLMTS 115
D A ++ F V +N GD+ SD +Q GSLG+ S
Sbjct: 200 DAAAANLVRNPQMFDVIVTENVYGDILSDEASQIAGSLGIAPS 242
>pdb|2IV0|A Chain A, Thermal Stability Of Isocitrate Dehydrogenase From
Archaeoglobus Fulgidus Studied By Crystal Structure
Analysis And Engineering Of Chimers
pdb|2IV0|B Chain B, Thermal Stability Of Isocitrate Dehydrogenase From
Archaeoglobus Fulgidus Studied By Crystal Structure
Analysis And Engineering Of Chimers
Length = 412
Score = 32.7 bits (73), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 55/132 (41%), Gaps = 20/132 (15%)
Query: 31 LSTKNTILKKYDGHFKDIFQEVYEKN--------------YKSQFEQAKIWYEHRLIDDM 76
L K I+K +G F+D EV ++ Y + + KI + R+ D+M
Sbjct: 220 LVHKGNIMKYTEGAFRDWGYEVAKQEFGEYCITEDELWDKYGGKQPEGKIVVKDRIADNM 279
Query: 77 VAQALKGNGGF-VWACKNYDGDVQSDIVAQGYGSLGLMTSILMCPDGKTIESEAAHGTVT 135
Q L + V A N +GD SD A G LG+ + DG + E HG+
Sbjct: 280 FQQILTRTDEYDVIALPNLNGDYLSDAAAALIGGLGIAPGSNIG-DGIGV-FEPVHGSAP 337
Query: 136 RHYRFLGINDIN 147
++ G N +N
Sbjct: 338 ---KYAGQNKVN 346
>pdb|3TY3|A Chain A, Crystal Structure Of Homoisocitrate Dehydrogenase From
Schizosaccharomyces Pombe Bound To Glycyl-Glycyl-Glycine
pdb|3TY3|B Chain B, Crystal Structure Of Homoisocitrate Dehydrogenase From
Schizosaccharomyces Pombe Bound To Glycyl-Glycyl-Glycine
pdb|3TY4|A Chain A, Crystal Structure Of Homoisocitrate Dehydrogenase From
Schizosaccharomyces Pombe
pdb|3TY4|B Chain B, Crystal Structure Of Homoisocitrate Dehydrogenase From
Schizosaccharomyces Pombe
Length = 366
Score = 32.3 bits (72), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 55/113 (48%), Gaps = 7/113 (6%)
Query: 22 ALQKKWPLYLSTKNTILKKYDGHFKDIFQEVYEKNYKSQFEQAKIWYEHRLIDDMVAQAL 81
++ KK + + K+ ++ DG F++ + + ++ + A I + +++D MV +
Sbjct: 188 SIHKKPLVTIIHKSNVMSVTDGLFRESCR--HAQSLDPSY--ASINVDEQIVDSMVYRLF 243
Query: 82 KGNGGF-VWACKNYDGDVQSDIVAQGYGSLGLMTSILMCPDGKTIESEAAHGT 133
+ F V N GD+ SD A GSLGL+ S + + + SE HG+
Sbjct: 244 REPECFDVVVAPNLYGDILSDGAASLIGSLGLVPSANVGDN--FVMSEPVHGS 294
>pdb|1BL5|A Chain A, Isocitrate Dehydrogenase From E. Coli Single Turnover Laue
Structure Of Rate-limited Product Complex, 10 Msec Time
Resolution
Length = 414
Score = 32.3 bits (72), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 51/121 (42%), Gaps = 16/121 (13%)
Query: 31 LSTKNTILKKYDGHFKDIFQEVYEKNYKSQFEQAKIWYEHR--------LIDDMVAQA-- 80
L K I+K +G FKD ++ + + + W + + +I D++A A
Sbjct: 225 LVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPWLKVKNPNTGKEIVIKDVIADAFL 284
Query: 81 ----LKGNGGFVWACKNYDGDVQSDIVAQGYGSLGLMTSILMCPDGKTIESEAAHGTVTR 136
L+ V AC N +GD SD +A G +G+ + + EA HGT +
Sbjct: 285 QQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAPGANIGDECALF--EATHGTAPK 342
Query: 137 H 137
+
Sbjct: 343 Y 343
>pdb|1IDD|A Chain A, Isocitrate Dehydrogenase Y160f Mutant Apo Enzyme
pdb|1IDE|A Chain A, Isocitrate Dehydrogenase Y160f Mutant Steady-State
Intermediate Complex (Laue Determination)
Length = 416
Score = 32.3 bits (72), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 51/121 (42%), Gaps = 16/121 (13%)
Query: 31 LSTKNTILKKYDGHFKDIFQEVYEKNYKSQFEQAKIWYEHR--------LIDDMVAQA-- 80
L K I+K +G FKD ++ + + + W + + +I D++A A
Sbjct: 227 LVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPWLKVKNPNTGKEIVIKDVIADAFL 286
Query: 81 ----LKGNGGFVWACKNYDGDVQSDIVAQGYGSLGLMTSILMCPDGKTIESEAAHGTVTR 136
L+ V AC N +GD SD +A G +G+ + + EA HGT +
Sbjct: 287 QQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAPGANIGDECALF--EATHGTAPK 344
Query: 137 H 137
+
Sbjct: 345 Y 345
>pdb|4ICD|A Chain A, Regulation Of Isocitrate Dehydrogenase By Phosphorylation
Involves No Long-Range Conformational Change In The Free
Enzyme
Length = 416
Score = 32.3 bits (72), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 51/121 (42%), Gaps = 16/121 (13%)
Query: 31 LSTKNTILKKYDGHFKDIFQEVYEKNYKSQFEQAKIWYEHR--------LIDDMVAQA-- 80
L K I+K +G FKD ++ + + + W + + +I D++A A
Sbjct: 227 LVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPWLKVKNPNTGKEIVIKDVIADAFL 286
Query: 81 ----LKGNGGFVWACKNYDGDVQSDIVAQGYGSLGLMTSILMCPDGKTIESEAAHGTVTR 136
L+ V AC N +GD SD +A G +G+ + + EA HGT +
Sbjct: 287 QQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAPGANIGDECALF--EATHGTAPK 344
Query: 137 H 137
+
Sbjct: 345 Y 345
>pdb|1P8F|A Chain A, A Four Location Model To Explain The Stereospecificity Of
Proteins.
pdb|1PB1|A Chain A, A Four Location Model To Explain The Stereospecificity Of
Proteins.
pdb|1PB3|A Chain A, Sites Of Binding And Orientation In A Four Location Model
For Protein Stereospecificity.
pdb|1AI2|A Chain A, Isocitrate Dehydrogenase Complexed With Isocitrate, Nadp+,
And Calcium (flash-cooled)
pdb|1AI3|A Chain A, Orbital Steering In The Catalytic Power Of Enzymes: Small
Structural Changes With Large Catalytic Consequences
pdb|1IKA|A Chain A, Structure Of Isocitrate Dehydrogenase With
Alpha-Ketoglutarate At 2.7 Angstroms Resolution:
Conformational Changes Induced By Decarboxylation Of
Isocitrate
pdb|1SJS|A Chain A, Access To Phosphorylation In Isocitrate Dehydrogenase May
Occur By Domain Shifting
pdb|3ICD|A Chain A, Structure Of A Bacterial Enzyme Regulated By
Phosphorylation, Isocitrate Dehydrogenase
pdb|5ICD|A Chain A, Regulation Of An Enzyme By Phosphorylation At The Active
Site
pdb|9ICD|A Chain A, Catalytic Mechanism Of Nadp+-Dependent Isocitrate
Dehydrogenase: Implications From The Structures Of
Magnesium-Isocitrate And Nadp+ Complexes
pdb|3LCB|C Chain C, The Crystal Structure Of Isocitrate Dehydrogenase
KinasePHOSPHATASE In Complex With Its Substrate,
Isocitrate Dehydrogenase, From Escherichia Coli.
pdb|3LCB|D Chain D, The Crystal Structure Of Isocitrate Dehydrogenase
KinasePHOSPHATASE In Complex With Its Substrate,
Isocitrate Dehydrogenase, From Escherichia Coli.
pdb|4AJ3|A Chain A, 3d Structure Of E. Coli Isocitrate Dehydrogenase In
Complex With Isocitrate, Calcium(Ii) And Nadp - The
Pseudo-Michaelis Complex
pdb|4AJA|A Chain A, 3d Structure Of E. Coli Isocitrate Dehydrogenase In
Complex With Isocitrate, Calcium(Ii) And Thionadp
Length = 416
Score = 32.3 bits (72), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 51/121 (42%), Gaps = 16/121 (13%)
Query: 31 LSTKNTILKKYDGHFKDIFQEVYEKNYKSQFEQAKIWYEHR--------LIDDMVAQA-- 80
L K I+K +G FKD ++ + + + W + + +I D++A A
Sbjct: 227 LVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPWLKVKNPNTGKEIVIKDVIADAFL 286
Query: 81 ----LKGNGGFVWACKNYDGDVQSDIVAQGYGSLGLMTSILMCPDGKTIESEAAHGTVTR 136
L+ V AC N +GD SD +A G +G+ + + EA HGT +
Sbjct: 287 QQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAPGANIGDECALF--EATHGTAPK 344
Query: 137 H 137
+
Sbjct: 345 Y 345
>pdb|6ICD|A Chain A, Regulation Of An Enzyme By Phosphorylation At The Active
Site
Length = 416
Score = 32.3 bits (72), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 51/121 (42%), Gaps = 16/121 (13%)
Query: 31 LSTKNTILKKYDGHFKDIFQEVYEKNYKSQFEQAKIWYEHR--------LIDDMVAQA-- 80
L K I+K +G FKD ++ + + + W + + +I D++A A
Sbjct: 227 LVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPWLKVKNPNTGKEIVIKDVIADAFL 286
Query: 81 ----LKGNGGFVWACKNYDGDVQSDIVAQGYGSLGLMTSILMCPDGKTIESEAAHGTVTR 136
L+ V AC N +GD SD +A G +G+ + + EA HGT +
Sbjct: 287 QQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAPGANIGDECALF--EATHGTAPK 344
Query: 137 H 137
+
Sbjct: 345 Y 345
>pdb|1HJ6|A Chain A, Isocitrate Dehydrogenase S113e Mutant Complexed With
Isopropylmalate, Nadp+ And Magnesium (Flash-Cooled)
pdb|7ICD|A Chain A, Regulation Of An Enzyme By Phosphorylation At The Active
Site
pdb|8ICD|A Chain A, Regulation Of An Enzyme By Phosphorylation At The Active
Site
Length = 416
Score = 32.3 bits (72), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 51/121 (42%), Gaps = 16/121 (13%)
Query: 31 LSTKNTILKKYDGHFKDIFQEVYEKNYKSQFEQAKIWYEHR--------LIDDMVAQA-- 80
L K I+K +G FKD ++ + + + W + + +I D++A A
Sbjct: 227 LVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPWLKVKNPNTGKEIVIKDVIADAFL 286
Query: 81 ----LKGNGGFVWACKNYDGDVQSDIVAQGYGSLGLMTSILMCPDGKTIESEAAHGTVTR 136
L+ V AC N +GD SD +A G +G+ + + EA HGT +
Sbjct: 287 QQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAPGANIGDECALF--EATHGTAPK 344
Query: 137 H 137
+
Sbjct: 345 Y 345
>pdb|1GRP|A Chain A, Regulatory And Catalytic Mechanisms In Escherichia Coli
Isocitrate Dehydrogenase: Multiple Roles For N115
Length = 416
Score = 32.3 bits (72), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 51/121 (42%), Gaps = 16/121 (13%)
Query: 31 LSTKNTILKKYDGHFKDIFQEVYEKNYKSQFEQAKIWYEHR--------LIDDMVAQA-- 80
L K I+K +G FKD ++ + + + W + + +I D++A A
Sbjct: 227 LVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPWLKVKNPNTGKEIVIKDVIADAFL 286
Query: 81 ----LKGNGGFVWACKNYDGDVQSDIVAQGYGSLGLMTSILMCPDGKTIESEAAHGTVTR 136
L+ V AC N +GD SD +A G +G+ + + EA HGT +
Sbjct: 287 QQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAPGANIGDECALF--EATHGTAPK 344
Query: 137 H 137
+
Sbjct: 345 Y 345
>pdb|4AJB|A Chain A, 3d Structure Of E. Coli Isocitrate Dehydrogenase K100m
Mutant In Complex With Isocitrate, Magnesium(Ii) And
Thionadp
pdb|4AJC|A Chain A, 3d Structure Of E. Coli Isocitrate Dehydrogenase K100m
Mutant In Complex With Alpha-Ketoglutarate, Calcium(Ii)
And Adenine Nucleotide Phosphate
pdb|4AJR|A Chain A, 3d Structure Of E. Coli Isocitrate Dehydrogenase K100m
Mutant In Complex With Alpha-Ketoglutarate,
Magnesium(Ii) And Nadph - The Product Complex
pdb|4AJS|A Chain A, 3d Structure Of E. Coli Isocitrate Dehydrogenase K100m
Mutant In Complex With Isocitrate, Magnesium(Ii),
Adenosine 2',5'-Biphosphate And
Ribosylnicotinamide-5'-Phosphate
Length = 416
Score = 32.0 bits (71), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 51/121 (42%), Gaps = 16/121 (13%)
Query: 31 LSTKNTILKKYDGHFKDIFQEVYEKNYKSQFEQAKIWYEHR--------LIDDMVAQA-- 80
L K I+K +G FKD ++ + + + W + + +I D++A A
Sbjct: 227 LVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPWLKVKNPNTGKEIVIKDVIADAFL 286
Query: 81 ----LKGNGGFVWACKNYDGDVQSDIVAQGYGSLGLMTSILMCPDGKTIESEAAHGTVTR 136
L+ V AC N +GD SD +A G +G+ + + EA HGT +
Sbjct: 287 QQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAPGANIGDECALF--EATHGTAPK 344
Query: 137 H 137
+
Sbjct: 345 Y 345
>pdb|1GRO|A Chain A, Regulatory And Catalytic Mechanisms In Escherichia Coli
Isocitrate Dehydrogenase: Multiple Roles For N115
Length = 416
Score = 32.0 bits (71), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 51/121 (42%), Gaps = 16/121 (13%)
Query: 31 LSTKNTILKKYDGHFKDIFQEVYEKNYKSQFEQAKIWYEHR--------LIDDMVAQA-- 80
L K I+K +G FKD ++ + + + W + + +I D++A A
Sbjct: 227 LVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPWLKVKNPNTGKEIVIKDVIADAFL 286
Query: 81 ----LKGNGGFVWACKNYDGDVQSDIVAQGYGSLGLMTSILMCPDGKTIESEAAHGTVTR 136
L+ V AC N +GD SD +A G +G+ + + EA HGT +
Sbjct: 287 QQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAPGANIGDECALF--EATHGTAPK 344
Query: 137 H 137
+
Sbjct: 345 Y 345
>pdb|1V5B|A Chain A, The Structure Of The Mutant, S225a And E251l, Of 3-
Isopropylmalate Dehydrogenase From Bacillus Coagulans
pdb|1V5B|B Chain B, The Structure Of The Mutant, S225a And E251l, Of 3-
Isopropylmalate Dehydrogenase From Bacillus Coagulans
pdb|1V5B|C Chain C, The Structure Of The Mutant, S225a And E251l, Of 3-
Isopropylmalate Dehydrogenase From Bacillus Coagulans
pdb|1V5B|D Chain D, The Structure Of The Mutant, S225a And E251l, Of 3-
Isopropylmalate Dehydrogenase From Bacillus Coagulans
pdb|1V5B|E Chain E, The Structure Of The Mutant, S225a And E251l, Of 3-
Isopropylmalate Dehydrogenase From Bacillus Coagulans
pdb|1V5B|F Chain F, The Structure Of The Mutant, S225a And E251l, Of 3-
Isopropylmalate Dehydrogenase From Bacillus Coagulans
pdb|1V5B|G Chain G, The Structure Of The Mutant, S225a And E251l, Of 3-
Isopropylmalate Dehydrogenase From Bacillus Coagulans
pdb|1V5B|H Chain H, The Structure Of The Mutant, S225a And E251l, Of 3-
Isopropylmalate Dehydrogenase From Bacillus Coagulans
Length = 366
Score = 32.0 bits (71), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Query: 48 IFQEVYEKNYKSQFEQAKIWYEHRLIDDMVAQALKGNGGF-VWACKNYDGDVQSDIVAQG 106
+++E+ E+ K + + H L+D Q + G F V +N GD+ SD+ +
Sbjct: 199 MWREIAEETAK---KYPDVELSHMLVDSTAMQLIANPGQFDVIVTENMFGDILSDLASVI 255
Query: 107 YGSLGLMTS 115
GSLG++ S
Sbjct: 256 TGSLGMLPS 264
>pdb|1CM7|A Chain A, 3-Isopropylmalate Dehydrogenase From Escherichia Coli
pdb|1CM7|B Chain B, 3-Isopropylmalate Dehydrogenase From Escherichia Coli
Length = 363
Score = 32.0 bits (71), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 62 EQAKIWYEHRLIDDMVAQALKGNGGF-VWACKNYDGDVQSDIVAQGYGSLGLMTS 115
E + H ID+ Q +K F V C N GD+ SD A GS+G++ S
Sbjct: 215 EYPDVELAHMYIDNATMQLIKDPSQFDVLLCSNLFGDILSDECAMITGSMGMLPS 269
>pdb|1CNZ|A Chain A, 3-Isopropylmalate Dehydrogenase (Ipmdh) From Salmonella
Typhimurium
pdb|1CNZ|B Chain B, 3-Isopropylmalate Dehydrogenase (Ipmdh) From Salmonella
Typhimurium
Length = 363
Score = 31.6 bits (70), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 66 IWYEHRLIDDMVAQALKGNGGF-VWACKNYDGDVQSDIVAQGYGSLGLMTS 115
+ H ID+ Q +K F V C N GD+ SD A GS+G++ S
Sbjct: 219 VELAHMYIDNATMQLIKDPSQFDVLLCSNLFGDILSDECAMITGSMGMLPS 269
>pdb|1XAC|A Chain A, Chimera Isopropylmalate Dehydrogenase Between Bacillus
Subtilis (M) And Thermus Thermophilus (T) From
N-Terminal: 20% T Middle 20% M Residual 60% T, Mutated
At S82r. Low Temperature (100k) Structure.
pdb|1XAD|A Chain A, Chimera Isopropylmalate Dehydrogenase Between Bacillus
Subtilis (M) And Thermus Thermophilus (T) From
N-Terminal: 20% T Middle 20% M Residual 60% T, Mutated
At S82r. Low Temperature (150k) Structure
Length = 345
Score = 31.2 bits (69), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 66 IWYEHRLIDDMVAQALKGNGGF-VWACKNYDGDVQSDIVAQGYGSLGLMTS 115
+ EH+ +D M ++ F V N GD+ SD+ + GSLGL+ S
Sbjct: 209 VALEHQYVDAMAMHLVRSPARFDVVVTGNIFGDILSDLASVLPGSLGLLPS 259
>pdb|1GC8|A Chain A, The Crystal Structure Of Thermus Thermophilus
3-Isopropylmalate Dehydrogenase Mutated At 172th From
Ala To Phe
pdb|1GC8|B Chain B, The Crystal Structure Of Thermus Thermophilus
3-Isopropylmalate Dehydrogenase Mutated At 172th From
Ala To Phe
Length = 345
Score = 31.2 bits (69), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 66 IWYEHRLIDDMVAQALKGNGGF-VWACKNYDGDVQSDIVAQGYGSLGLMTS 115
+ EH+ +D M ++ F V N GD+ SD+ + GSLGL+ S
Sbjct: 209 VALEHQYVDAMAMHLVRSPARFDVVVTGNIFGDILSDLASVLPGSLGLLPS 259
>pdb|1OSI|A Chain A, Structure Of 3-Isopropylmalate Dehydrogenase
pdb|1OSI|B Chain B, Structure Of 3-Isopropylmalate Dehydrogenase
pdb|1OSI|C Chain C, Structure Of 3-Isopropylmalate Dehydrogenase
pdb|1OSI|D Chain D, Structure Of 3-Isopropylmalate Dehydrogenase
pdb|1HEX|A Chain A, Structure Of 3-Isopropylmalate Dehydrogenase In Complex
With Nad+: Ligand-Induced Loop-Closing And Mechanism For
Cofactor Specificity
pdb|1XAA|A Chain A, 3-Isopropylmalate Dehydrogenase, Low Temperature (100k)
Structure
pdb|1XAB|A Chain A, 3-Isopropylmalate Dehydrogenase, Low Temperature (150k)
Structure
pdb|2ZTW|A Chain A, Structure Of 3-Isopropylmalate Dehydrogenase In Complex
With The Inhibitor And Nad+
Length = 345
Score = 31.2 bits (69), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 66 IWYEHRLIDDMVAQALKGNGGF-VWACKNYDGDVQSDIVAQGYGSLGLMTS 115
+ EH+ +D M ++ F V N GD+ SD+ + GSLGL+ S
Sbjct: 209 VALEHQYVDAMAMHLVRSPARFDVVVTGNIFGDILSDLASVLPGSLGLLPS 259
>pdb|1G2U|A Chain A, The Structure Of The Mutant, A172v, Of 3-Isopropylmalate
Dehydrogenase From Thermus Thermophilus Hb8 : Its
Thermostability And Structure
Length = 345
Score = 31.2 bits (69), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 66 IWYEHRLIDDMVAQALKGNGGF-VWACKNYDGDVQSDIVAQGYGSLGLMTS 115
+ EH+ +D M ++ F V N GD+ SD+ + GSLGL+ S
Sbjct: 209 VALEHQYVDAMAMHLVRSPARFDVVVTGNIFGDILSDLASVLPGSLGLLPS 259
>pdb|1DPZ|A Chain A, Stucture Of Modified 3-Isopropylmalate Dehydrogenase At
The C- Terminus, Hd711
pdb|1DPZ|B Chain B, Stucture Of Modified 3-Isopropylmalate Dehydrogenase At
The C- Terminus, Hd711
Length = 349
Score = 31.2 bits (69), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 66 IWYEHRLIDDMVAQALKGNGGF-VWACKNYDGDVQSDIVAQGYGSLGLMTS 115
+ EH+ +D M ++ F V N GD+ SD+ + GSLGL+ S
Sbjct: 209 VALEHQYVDAMAMHLVRSPARFDVVVTGNIFGDILSDLASVLPGSLGLLPS 259
>pdb|1IPD|A Chain A, Three-Dimensional Structure Of A Highly Thermostable
Enzyme, 3- Isopropylmalate Dehydrogenase Of Thermus
Thermophilus At 2.2 Angstroms Resolution
Length = 345
Score = 31.2 bits (69), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 66 IWYEHRLIDDMVAQALKGNGGF-VWACKNYDGDVQSDIVAQGYGSLGLMTS 115
+ EH+ +D M ++ F V N GD+ SD+ + GSLGL+ S
Sbjct: 209 VALEHQYVDAMAMHLVRSPARFDVVVTGNIFGDILSDLASVLPGSLGLLPS 259
>pdb|1OSJ|A Chain A, Structure Of 3-isopropylmalate Dehydrogenase
pdb|1OSJ|B Chain B, Structure Of 3-isopropylmalate Dehydrogenase
Length = 345
Score = 31.2 bits (69), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 66 IWYEHRLIDDMVAQALKGNGGF-VWACKNYDGDVQSDIVAQGYGSLGLMTS 115
+ EH+ +D M ++ F V N GD+ SD+ + GSLGL+ S
Sbjct: 209 VALEHQYVDAMAMHLVRSPARFDVVVTGNIFGDILSDLASVLPGSLGLLPS 259
>pdb|1GC9|A Chain A, The Crystal Structure Of Thermus Thermophilus
3-Isopropylmalate Dehydrogenase Mutated At 172th From
Ala To Gly
Length = 345
Score = 31.2 bits (69), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 66 IWYEHRLIDDMVAQALKGNGGF-VWACKNYDGDVQSDIVAQGYGSLGLMTS 115
+ EH+ +D M ++ F V N GD+ SD+ + GSLGL+ S
Sbjct: 209 VALEHQYVDAMAMHLVRSPARFDVVVTGNIFGDILSDLASVLPGSLGLLPS 259
>pdb|2Y3Z|A Chain A, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Apo Enzyme
pdb|2Y40|A Chain A, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Mn
pdb|2Y40|B Chain B, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Mn
pdb|2Y41|A Chain A, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Ipm And Mn
pdb|2Y41|B Chain B, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Ipm And Mn
pdb|2Y42|A Chain A, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Nadh And Mn
pdb|2Y42|B Chain B, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Nadh And Mn
pdb|2Y42|C Chain C, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Nadh And Mn
pdb|2Y42|D Chain D, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Nadh And Mn
pdb|4F7I|A Chain A, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus In Complex With Ipm, Mn And Nadh
pdb|4F7I|B Chain B, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus In Complex With Ipm, Mn And Nadh
pdb|4F7I|C Chain C, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus In Complex With Ipm, Mn And Nadh
pdb|4F7I|D Chain D, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus In Complex With Ipm, Mn And Nadh
Length = 359
Score = 30.8 bits (68), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 66 IWYEHRLIDDMVAQALKGNGGF-VWACKNYDGDVQSDIVAQGYGSLGLMTS 115
+ EH+ +D M ++ F V N GD+ SD+ + GSLGL+ S
Sbjct: 212 VALEHQYVDAMAMHLVRSPARFDVVVTGNIFGDILSDLASVLPGSLGLLPS 262
>pdb|1DR0|A Chain A, Structure Of Modified 3-isopropylmalate Dehydrogenase At
The C- Terminus, Hd708
pdb|1DR0|B Chain B, Structure Of Modified 3-isopropylmalate Dehydrogenase At
The C- Terminus, Hd708
Length = 346
Score = 30.8 bits (68), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 66 IWYEHRLIDDMVAQALKGNGGF-VWACKNYDGDVQSDIVAQGYGSLGLMTS 115
+ EH+ +D M ++ F V N GD+ SD+ + GSLGL+ S
Sbjct: 209 VALEHQYVDAMAMHLVRSPARFDVVVTGNIFGDILSDLASVLPGSLGLLPS 259
>pdb|1CW7|A Chain A, Low Temperature Structure Of Wild-Type Idh Complexed With
Mg- Isocitrate
Length = 416
Score = 30.8 bits (68), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 49/117 (41%), Gaps = 16/117 (13%)
Query: 31 LSTKNTILKKYDGHFKDIFQEVYEKNYKSQFEQAKIWYEHR--------LIDDMVAQA-- 80
L K I+K +G FKD ++ + + + W + + +I D++A A
Sbjct: 227 LVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPWLKVKNPNTGKEIVIKDVIADAFL 286
Query: 81 ----LKGNGGFVWACKNYDGDVQSDIVAQGYGSLGLMTSILMCPDGKTIESEAAHGT 133
L+ V AC N +GD SD +A G +G+ + + EA HGT
Sbjct: 287 QQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAPGANIGDECALF--EATHGT 341
>pdb|1IDM|A Chain A, 3-Isopropylmalate Dehydrogenase, Loop-Deleted Chimera
Length = 343
Score = 30.8 bits (68), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 66 IWYEHRLIDDMVAQALKGNGGF-VWACKNYDGDVQSDIVAQGYGSLGLMTS 115
+ EH+ +D M ++ F V N GD+ SD+ + GSLGL+ S
Sbjct: 207 VALEHQYVDAMAMHLVRSPARFDVVVTGNIFGDILSDLASVLPGSLGLLPS 257
>pdb|1DR8|A Chain A, Structure Of Modified 3-Isopropylmalate Dehydrogenase At
The C- Terminus, Hd177
pdb|1DR8|B Chain B, Structure Of Modified 3-Isopropylmalate Dehydrogenase At
The C- Terminus, Hd177
Length = 344
Score = 30.8 bits (68), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 66 IWYEHRLIDDMVAQALKGNGGF-VWACKNYDGDVQSDIVAQGYGSLGLMTS 115
+ EH+ +D M ++ F V N GD+ SD+ + GSLGL+ S
Sbjct: 209 VALEHQYVDAMAMHLVRSPARFDVVVTGNIFGDILSDLASVLPGSLGLLPS 259
>pdb|1ISO|A Chain A, Isocitrate Dehydrogenase: Structure Of An Engineered
Nadp+--> Nad+ Specificity-Reversal Mutant
Length = 416
Score = 30.4 bits (67), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 42/96 (43%), Gaps = 14/96 (14%)
Query: 31 LSTKNTILKKYDGHFKDIFQEVYEKNYKSQFEQAKIWYEHR--------LIDDMVAQA-- 80
L K I+K +G FKD ++ + + + W + + +I D++A A
Sbjct: 227 LVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPWLKVKNPNTGKEIVIKDVIADAFL 286
Query: 81 ----LKGNGGFVWACKNYDGDVQSDIVAQGYGSLGL 112
L+ V AC N +GD SD +A G +G+
Sbjct: 287 QQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGI 322
>pdb|3IF0|X Chain X, Crystal Structure Of The Nanoarchaeum Equitans Trna
Splicing Endonuclease Structural Subunit
pdb|3IEY|B Chain B, Crystal Structure Of The Functional Nanoarchaeum Equitans
Trna Splicing Endonuclease
Length = 153
Score = 30.4 bits (67), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 9/81 (11%)
Query: 27 WPLYLSTKNTILKKYDGHFKDIFQEVYEKN-YKSQFEQAKIWY----EHRL----IDDMV 77
W +Y + K+ IL+ Y F F E+YEK EQ + Y E R+ + D+
Sbjct: 61 WEIYYTVKDLILRGYRVRFDGFFIELYEKGIIPGTIEQDYLVYPVSGEIRMTWGELLDIY 120
Query: 78 AQALKGNGGFVWACKNYDGDV 98
+A+ F+ A + +GDV
Sbjct: 121 NKAIARKSKFMLAIVDSEGDV 141
>pdb|2C2B|A Chain A, Crystallographic Structure Of Arabidopsis Thaliana
Threonine Synthase Complexed With Pyridoxal Phosphate
And S-Adenosylmethionine
pdb|2C2B|B Chain B, Crystallographic Structure Of Arabidopsis Thaliana
Threonine Synthase Complexed With Pyridoxal Phosphate
And S-Adenosylmethionine
pdb|2C2B|C Chain C, Crystallographic Structure Of Arabidopsis Thaliana
Threonine Synthase Complexed With Pyridoxal Phosphate
And S-Adenosylmethionine
pdb|2C2B|D Chain D, Crystallographic Structure Of Arabidopsis Thaliana
Threonine Synthase Complexed With Pyridoxal Phosphate
And S-Adenosylmethionine
pdb|2C2B|E Chain E, Crystallographic Structure Of Arabidopsis Thaliana
Threonine Synthase Complexed With Pyridoxal Phosphate
And S-Adenosylmethionine
pdb|2C2B|F Chain F, Crystallographic Structure Of Arabidopsis Thaliana
Threonine Synthase Complexed With Pyridoxal Phosphate
And S-Adenosylmethionine
pdb|2C2G|A Chain A, Crystal Structure Of Threonine Synthase From Arabidopsis
Thaliana In Complex With Its Cofactor Pyridoxal
Phosphate
pdb|2C2G|B Chain B, Crystal Structure Of Threonine Synthase From Arabidopsis
Thaliana In Complex With Its Cofactor Pyridoxal
Phosphate
Length = 486
Score = 30.0 bits (66), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
Query: 38 LKKYDGHF-KDIFQEVYEKN---YKSQFEQAKIWYEHRLIDDMVAQALKGNGGFVWA 90
LK++DG + +D+F K+ Y S K W + DD + A +GN WA
Sbjct: 80 LKRFDGAYWRDLFDSRVGKSTWPYGSGVWSKKEWVLPEIDDDDIVSAFEGNSNLFWA 136
>pdb|1E5X|A Chain A, Structure Of Threonine Synthase From Arabidopsis Thaliana
pdb|1E5X|B Chain B, Structure Of Threonine Synthase From Arabidopsis Thaliana
Length = 486
Score = 30.0 bits (66), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
Query: 38 LKKYDGHF-KDIFQEVYEKN---YKSQFEQAKIWYEHRLIDDMVAQALKGNGGFVWA 90
LK++DG + +D+F K+ Y S K W + DD + A +GN WA
Sbjct: 80 LKRFDGAYWRDLFDSRVGKSTWPYGSGVWSKKEWVLPEIDDDDIVSAFEGNSNLFWA 136
>pdb|1CW1|A Chain A, Crystal Structure Of Isocitrate Dehydrogenase Mutant K230m
Bound To Isocitrate And Mn2+
pdb|1CW4|A Chain A, Crystal Structure Of K230m Isocitrate Dehydrogenase In
Complex With Alpha-Ketoglutarate
pdb|1IDC|A Chain A, Isocitrate Dehydrogenase From E.coli (mutant K230m),
Steady-state Intermediate Complex Determined By Laue
Crystallography
pdb|1IDF|A Chain A, Isocitrate Dehydrogenase K230m Mutant Apo Enzyme
Length = 416
Score = 30.0 bits (66), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 49/115 (42%), Gaps = 16/115 (13%)
Query: 37 ILKKYDGHFKDIFQEVYEKNYKSQFEQAKIWYEHR--------LIDDMVAQA------LK 82
I+K +G FKD ++ + + + W + + +I D++A A L+
Sbjct: 233 IMKFTEGAFKDWGYQLAREEFGGELIDGGPWLKVKNPNTGKEIVIKDVIADAFLQQILLR 292
Query: 83 GNGGFVWACKNYDGDVQSDIVAQGYGSLGLMTSILMCPDGKTIESEAAHGTVTRH 137
V AC N +GD SD +A G +G+ + + EA HGT ++
Sbjct: 293 PAEYDVIACMNLNGDYISDALAAQVGGIGIAPGANIGDECALF--EATHGTAPKY 345
>pdb|3IS1|X Chain X, Crystal Structure Of Functional Region Of Uafa From
Staphylococcus Saprophyticus In C2 Form At 2.45 Angstrom
Resolution
Length = 446
Score = 30.0 bits (66), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 7/58 (12%)
Query: 83 GNGGFVWACKNYDGDVQSDIVAQGYGSLGLMTSILMCPDGKTIESEAAHGTVTRHYRF 140
G GG+VW KN DG VQ+D A G +T L+ P G + + +T HY F
Sbjct: 324 GFGGYVWFDKNNDG-VQNDSNAAAAG----ITVNLLDPTGIRLATTTTD--ITGHYNF 374
>pdb|3IRP|X Chain X, Crystal Structure Of Functional Region Of Uafa From
Staphylococcus Saprophyticus At 1.50 Angstrom Resolution
pdb|3IRZ|A Chain A, Crystal Structure Of Functional Region Of Uafa From
Staphylococcus Saprophyticus In P212121 Form
pdb|3IS0|X Chain X, Crystal Structure Of Functional Region Of Uafa From
Staphylococcus Saprophyticus In The Presence Of
Cholesterol
Length = 429
Score = 30.0 bits (66), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 7/58 (12%)
Query: 83 GNGGFVWACKNYDGDVQSDIVAQGYGSLGLMTSILMCPDGKTIESEAAHGTVTRHYRF 140
G GG+VW KN DG VQ+D A G +T L+ P G + + +T HY F
Sbjct: 307 GFGGYVWFDKNNDG-VQNDSNAAAAG----ITVNLLDPTGIRLATTTTD--ITGHYNF 357
>pdb|2AYQ|A Chain A, 3-Isopropylmalate Dehydrogenase From The Moderate
Facultative Thermophile, Bacillus Coagulans
pdb|2AYQ|B Chain B, 3-Isopropylmalate Dehydrogenase From The Moderate
Facultative Thermophile, Bacillus Coagulans
Length = 366
Score = 29.3 bits (64), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Query: 48 IFQEVYEKNYKSQFEQAKIWYEHRLIDDMVAQALKGNGGF-VWACKNYDGDVQSDIVAQG 106
+++E+ E+ K + + H L+D Q + G F V +N GD+ SD +
Sbjct: 199 MWREIAEETAK---KYPDVELSHMLVDSTSMQLIANPGQFDVIVTENMFGDILSDEASVI 255
Query: 107 YGSLGLMTS 115
GSLG++ S
Sbjct: 256 TGSLGMLPS 264
>pdb|1V53|A Chain A, The Crystal Structure Of 3-Isopropylmalate Dehydrogenase
From Bacillus Coagulans
pdb|1V53|B Chain B, The Crystal Structure Of 3-Isopropylmalate Dehydrogenase
From Bacillus Coagulans
Length = 366
Score = 29.3 bits (64), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Query: 48 IFQEVYEKNYKSQFEQAKIWYEHRLIDDMVAQALKGNGGF-VWACKNYDGDVQSDIVAQG 106
+++E+ E+ K + + H L+D Q + G F V +N GD+ SD +
Sbjct: 199 MWREIAEETAK---KYPDVELSHMLVDSTSMQLIANPGQFDVIVTENMFGDILSDEASVI 255
Query: 107 YGSLGLMTS 115
GSLG++ S
Sbjct: 256 TGSLGMLPS 264
>pdb|4IWH|A Chain A, Crystal Structure Of A 3-isopropylmalate Dehydrogenase
From Burkholderia Pseudomallei
pdb|4IWH|B Chain B, Crystal Structure Of A 3-isopropylmalate Dehydrogenase
From Burkholderia Pseudomallei
Length = 363
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 50/113 (44%), Gaps = 9/113 (7%)
Query: 22 ALQKKWPLYLSTKNTILKKYDGHFKDIFQEVYEKNYKSQFEQAKIWYEHRLIDDMVAQAL 81
A QK+ LS + + + ++D+ +V + E A + H +D+ Q
Sbjct: 185 AAQKRAKKLLSVDKSNVLETSQFWRDVMIDVSK-------EYADVELSHMYVDNAAMQLA 237
Query: 82 KGNGGF-VWACKNYDGDVQSDIVAQGYGSLGLMTSILMCPDGKTIESEAAHGT 133
K F V N GD+ SD + GS+G++ S + + K + E +HG+
Sbjct: 238 KAPKQFDVIVTGNMFGDILSDEASMLTGSIGMLPSASLDKNNKGL-YEPSHGS 289
>pdb|2Q8Y|A Chain A, Structural Insight Into The Enzymatic Mechanism Of The
Phophothreonine Lyase
pdb|2Z8P|A Chain A, Structural Basis For The Catalytic Mechanism Of
Phosphothreonine Lyase
Length = 241
Score = 28.5 bits (62), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/108 (22%), Positives = 46/108 (42%), Gaps = 14/108 (12%)
Query: 40 KYDGHFKDIFQEVYEKNYKSQFEQAKIWYEHRLIDDMVAQALKGNGGFV---------WA 90
+ + H D+F ++ +SQ + A + ++ DMV QA + G + WA
Sbjct: 77 QLNNHGYDVFIHARRESPQSQGKFAGDKFHISVLRDMVPQAFQALSGLLFSEDSPVDKWA 136
Query: 91 CKNYDGDVQSDIVAQGYGSLGLMTSILMCPDGKTIESEAAHGTVTRHY 138
+ + +V Q SLG ++ + PD + + A+ TR +
Sbjct: 137 VTDME-----KVVQQARVSLGAQFTLYIKPDQENSQYSASFLHKTRQF 179
>pdb|1HQS|A Chain A, Crystal Structure Of Isocitrate Dehydrogenase From
Bacillus Subtilis
pdb|1HQS|B Chain B, Crystal Structure Of Isocitrate Dehydrogenase From
Bacillus Subtilis
Length = 423
Score = 28.5 bits (62), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 58/146 (39%), Gaps = 30/146 (20%)
Query: 29 LYLSTKNTILKKYDGHFKDIFQEVYEKNY-------------------------KSQFEQ 63
+ L K I+K +G FK+ E+ EK Y +S+ E
Sbjct: 216 VTLVHKGNIMKFTEGAFKNWGYELAEKEYGDKVFTWAQYDRIAEEQGKDAANKAQSEAEA 275
Query: 64 A-KIWYEHRLIDDMVAQALKGNGGF-VWACKNYDGDVQSDIVAQGYGSLGLMTSILMCPD 121
A KI + + D + Q L F V A N +GD SD +A G +G+ + +
Sbjct: 276 AGKIIIKDSIADIFLQQILTRPNEFDVVATMNLNGDYISDALAAQVGGIGIAPGANINYE 335
Query: 122 GKTIESEAAHGTVTRHYRFLGINDIN 147
EA HGT ++ G++ +N
Sbjct: 336 TGHAIFEATHGTAP---KYAGLDKVN 358
>pdb|1WAL|A Chain A, 3-Isopropylmalate Dehydrogenase (Ipmdh) Mutant (M219a)from
Thermus Thermophilus
Length = 345
Score = 28.5 bits (62), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 66 IWYEHRLIDDMVAQALKGNGGF-VWACKNYDGDVQSDIVAQGYGSLGLMTS 115
+ EH+ +D ++ F V N GD+ SD+ + GSLGL+ S
Sbjct: 209 VALEHQYVDAAAMHLVRSPARFDVVVTGNIFGDILSDLASVLPGSLGLLPS 259
>pdb|2Z8M|A Chain A, Structural Basis For The Catalytic Mechanism Of
Phosphothreonine Lyase
pdb|2Z8M|B Chain B, Structural Basis For The Catalytic Mechanism Of
Phosphothreonine Lyase
pdb|2Z8N|A Chain A, Structural Basis For The Catalytic Mechanism Of
Phosphothreonine Lyase
pdb|2Z8N|B Chain B, Structural Basis For The Catalytic Mechanism Of
Phosphothreonine Lyase
Length = 241
Score = 27.7 bits (60), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/106 (22%), Positives = 46/106 (43%), Gaps = 10/106 (9%)
Query: 40 KYDGHFKDIFQEVYEKNYKSQFEQAKIWYEHRLIDDMVAQALKGNGGFVWACKNYDGDV- 98
+ + H D+F ++ +SQ + A + ++ DMV QA + G +++ D V
Sbjct: 77 QLNNHGYDVFIHARRESPQSQGKFAGDKFHISVLRDMVPQAFQALSGLLFS---EDSPVD 133
Query: 99 ------QSDIVAQGYGSLGLMTSILMCPDGKTIESEAAHGTVTRHY 138
+V Q SLG ++ + PD + + A+ TR +
Sbjct: 134 KWKVTDMEKVVQQARVSLGAQFTLYIKPDQENSQYSASFLHKTRQF 179
>pdb|1A05|A Chain A, Crystal Structure Of The Complex Of 3-Isopropylmalate
Dehydrogenase From Thiobacillus Ferrooxidans With 3-
Isopropylmalate
pdb|1A05|B Chain B, Crystal Structure Of The Complex Of 3-Isopropylmalate
Dehydrogenase From Thiobacillus Ferrooxidans With 3-
Isopropylmalate
Length = 358
Score = 27.3 bits (59), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 66 IWYEHRLIDDMVAQALKGNGGF-VWACKNYDGDVQSDIVAQGYGSLGLMTS 115
+ H +D+ Q ++ F V N GD+ SD +Q GS+G++ S
Sbjct: 214 VRLSHMYVDNAAMQLIRAPAQFDVLLTGNMFGDILSDEASQLTGSIGMLPS 264
>pdb|3ESL|A Chain A, Crystal Structure Of The Conserved N-Terminal Domain Of
The Mitotic Checkpoint Component Bub1
pdb|3ESL|B Chain B, Crystal Structure Of The Conserved N-Terminal Domain Of
The Mitotic Checkpoint Component Bub1
Length = 202
Score = 26.2 bits (56), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 54 EKNYKSQFEQAKIWYEHRLIDDM 76
+K SQ Q KI YE RL++D+
Sbjct: 1 QKEQHSQLNQTKIAYEQRLLNDL 23
>pdb|2VC5|A Chain A, Structural Basis For Natural Lactonase And Promiscuous
Phosphotriesterase Activities
pdb|2VC5|B Chain B, Structural Basis For Natural Lactonase And Promiscuous
Phosphotriesterase Activities
pdb|2VC5|C Chain C, Structural Basis For Natural Lactonase And Promiscuous
Phosphotriesterase Activities
pdb|2VC5|D Chain D, Structural Basis For Natural Lactonase And Promiscuous
Phosphotriesterase Activities
pdb|2VC7|A Chain A, Structural Basis For Natural Lactonase And Promiscuous
Phosphotriesterase Activities
pdb|2VC7|B Chain B, Structural Basis For Natural Lactonase And Promiscuous
Phosphotriesterase Activities
pdb|2VC7|C Chain C, Structural Basis For Natural Lactonase And Promiscuous
Phosphotriesterase Activities
pdb|2VC7|D Chain D, Structural Basis For Natural Lactonase And Promiscuous
Phosphotriesterase Activities
pdb|3UF9|A Chain A, Crystal Structure Of Ssopox In Complex With The
Phosphotriester Fensulfothion
pdb|3UF9|B Chain B, Crystal Structure Of Ssopox In Complex With The
Phosphotriester Fensulfothion
pdb|3UF9|C Chain C, Crystal Structure Of Ssopox In Complex With The
Phosphotriester Fensulfothion
pdb|3UF9|D Chain D, Crystal Structure Of Ssopox In Complex With The
Phosphotriester Fensulfothion
Length = 314
Score = 26.2 bits (56), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 12 WIFGKPTYNVALQKKWPLYLSTKNTI-LKKYDGHFKDIFQEVYEKNYKSQF 61
W KP Y L +W + L ++TI K +G +++ ++++N K F
Sbjct: 263 WGTAKPEYKPKLAPRWSITLIFEDTIPFLKRNGVNEEVIATIFKENPKKFF 313
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,953,551
Number of Sequences: 62578
Number of extensions: 201764
Number of successful extensions: 640
Number of sequences better than 100.0: 67
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 45
Number of HSP's that attempted gapping in prelim test: 613
Number of HSP's gapped (non-prelim): 67
length of query: 152
length of database: 14,973,337
effective HSP length: 90
effective length of query: 62
effective length of database: 9,341,317
effective search space: 579161654
effective search space used: 579161654
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)