Query psy12309
Match_columns 152
No_of_seqs 119 out of 1071
Neff 5.6
Searched_HMMs 46136
Date Fri Aug 16 15:45:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12309.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12309hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0473 LeuB Isocitrate/isopro 100.0 6.6E-63 1.4E-67 421.3 9.6 141 4-151 151-293 (348)
2 PRK08997 isocitrate dehydrogen 100.0 1.3E-59 2.7E-64 402.1 12.4 139 4-151 142-282 (334)
3 PRK03437 3-isopropylmalate deh 100.0 2E-59 4.3E-64 402.3 11.7 141 4-151 155-298 (344)
4 PLN02329 3-isopropylmalate deh 100.0 1.2E-59 2.7E-64 410.3 10.1 139 4-151 206-345 (409)
5 PRK08194 tartrate dehydrogenas 100.0 2.5E-59 5.5E-64 402.6 11.4 141 4-151 156-298 (352)
6 TIGR00169 leuB 3-isopropylmala 100.0 4E-59 8.7E-64 401.0 12.5 139 4-151 158-297 (349)
7 PLN00118 isocitrate dehydrogen 100.0 4.6E-59 9.9E-64 403.0 12.5 140 4-151 179-320 (372)
8 PRK14025 multifunctional 3-iso 100.0 5.3E-59 1.1E-63 397.8 12.3 139 4-151 135-279 (330)
9 TIGR02089 TTC tartrate dehydro 100.0 4.4E-59 9.6E-64 401.2 11.7 141 4-151 159-301 (352)
10 PTZ00435 isocitrate dehydrogen 100.0 6.8E-59 1.5E-63 405.8 12.8 149 3-151 182-336 (413)
11 PRK06451 isocitrate dehydrogen 100.0 7.1E-59 1.5E-63 406.3 12.7 145 5-151 192-352 (412)
12 PRK08299 isocitrate dehydrogen 100.0 8.8E-59 1.9E-63 404.2 13.0 146 5-151 181-333 (402)
13 PRK07006 isocitrate dehydrogen 100.0 6.7E-59 1.5E-63 406.3 11.3 146 4-151 192-352 (409)
14 TIGR00127 nadp_idh_euk isocitr 100.0 2.2E-58 4.9E-63 402.2 12.4 149 3-151 180-334 (409)
15 PRK09222 isocitrate dehydrogen 100.0 4.2E-58 9.2E-63 407.0 12.4 139 4-151 144-284 (482)
16 PLN00123 isocitrate dehydrogen 100.0 5E-58 1.1E-62 395.0 12.3 139 4-151 163-307 (360)
17 TIGR02924 ICDH_alpha isocitrat 100.0 4.4E-58 9.6E-63 405.9 11.5 139 4-151 140-280 (473)
18 TIGR00183 prok_nadp_idh isocit 100.0 8.7E-58 1.9E-62 400.2 12.1 146 4-151 199-359 (416)
19 PRK00772 3-isopropylmalate deh 100.0 2.4E-57 5.2E-62 391.1 12.1 139 4-151 161-300 (358)
20 TIGR00175 mito_nad_idh isocitr 100.0 2.5E-57 5.4E-62 387.9 11.9 139 4-151 140-281 (333)
21 PLN00096 isocitrate dehydrogen 100.0 2.9E-57 6.3E-62 392.4 11.8 149 2-151 169-332 (393)
22 PLN00103 isocitrate dehydrogen 100.0 9.9E-57 2.1E-61 392.1 12.5 147 5-151 185-337 (410)
23 PLN03065 isocitrate dehydrogen 100.0 2.2E-56 4.9E-61 395.1 12.6 149 3-151 250-404 (483)
24 PF00180 Iso_dh: Isocitrate/is 100.0 1.2E-56 2.7E-61 385.1 9.8 140 4-151 155-296 (348)
25 KOG0785|consensus 100.0 1.4E-56 3E-61 377.9 8.9 138 5-151 174-313 (365)
26 PRK07362 isocitrate dehydrogen 100.0 6.7E-56 1.5E-60 390.1 10.9 146 4-151 206-416 (474)
27 TIGR02088 LEU3_arch isopropylm 100.0 1.3E-55 2.9E-60 375.9 12.0 138 4-151 136-274 (322)
28 COG0538 Icd Isocitrate dehydro 100.0 2E-45 4.2E-50 316.6 11.5 144 6-151 191-348 (407)
29 KOG0784|consensus 100.0 3.7E-45 8E-50 311.2 7.7 138 4-151 179-320 (375)
30 KOG0786|consensus 100.0 1.6E-44 3.5E-49 299.9 6.6 140 4-151 158-306 (363)
31 KOG1526|consensus 100.0 2.3E-34 5E-39 243.7 7.6 147 3-149 191-338 (422)
32 PF04166 PdxA: Pyridoxal phosp 91.6 0.062 1.3E-06 46.1 0.5 24 125-148 267-290 (298)
33 COG1995 PdxA Pyridoxal phospha 89.2 0.12 2.5E-06 45.1 0.1 39 111-149 278-316 (332)
34 PRK03371 pdxA 4-hydroxythreoni 88.8 0.14 3E-06 44.5 0.2 24 125-148 292-315 (326)
35 PRK00232 pdxA 4-hydroxythreoni 88.6 0.14 3E-06 44.6 0.1 24 125-148 293-316 (332)
36 PRK01909 pdxA 4-hydroxythreoni 87.8 0.17 3.7E-06 44.0 0.1 131 5-148 173-312 (329)
37 PRK03743 pdxA 4-hydroxythreoni 87.7 0.17 3.7E-06 44.0 0.1 24 125-148 293-316 (332)
38 TIGR00557 pdxA 4-hydroxythreon 87.7 0.18 3.8E-06 43.7 0.2 24 125-148 286-309 (320)
39 PRK03946 pdxA 4-hydroxythreoni 87.6 0.18 3.8E-06 43.5 0.1 24 125-148 269-293 (307)
40 PRK05312 pdxA 4-hydroxythreoni 87.5 0.18 3.9E-06 44.0 0.1 24 125-148 298-321 (336)
41 PRK02746 pdxA 4-hydroxythreoni 87.2 0.19 4.2E-06 44.0 0.1 76 66-148 245-329 (345)
42 PF03971 IDH: Monomeric isocit 64.2 33 0.00071 32.8 7.5 123 8-141 459-589 (735)
43 COG1618 Predicted nucleotide k 59.6 92 0.002 25.1 8.7 93 7-106 82-175 (179)
44 TIGR00178 monomer_idh isocitra 59.0 53 0.0011 31.4 7.9 120 8-140 463-592 (741)
45 PF00582 Usp: Universal stress 55.7 15 0.00032 25.0 3.0 26 8-33 12-37 (140)
46 cd01988 Na_H_Antiporter_C The 52.5 21 0.00046 24.7 3.5 26 9-34 10-35 (132)
47 PRK07232 bifunctional malic en 49.4 2.1E+02 0.0045 27.9 10.5 97 7-110 602-714 (752)
48 KOG1671|consensus 49.1 13 0.00029 30.5 2.1 39 109-149 155-193 (210)
49 KOG1014|consensus 47.6 42 0.00092 29.2 5.1 35 16-58 64-98 (312)
50 COG0723 QcrA Rieske Fe-S prote 46.4 22 0.00048 27.5 3.0 47 98-150 103-150 (177)
51 TIGR00651 pta phosphate acetyl 44.6 1.3E+02 0.0029 25.6 7.7 96 7-109 157-269 (303)
52 cd01989 STK_N The N-terminal d 43.6 24 0.00053 25.3 2.7 25 9-33 10-34 (146)
53 COG0280 Pta Phosphotransacetyl 43.4 1.9E+02 0.0042 25.3 8.5 103 7-110 174-287 (327)
54 PRK15005 universal stress prot 40.9 40 0.00087 24.0 3.5 23 11-33 17-39 (144)
55 PRK09982 universal stress prot 40.4 34 0.00074 24.9 3.1 26 9-34 14-39 (142)
56 PRK12862 malic enzyme; Reviewe 38.6 1.7E+02 0.0037 28.4 8.1 96 6-108 609-720 (763)
57 PRK12861 malic enzyme; Reviewe 38.1 3.9E+02 0.0086 26.1 10.5 94 8-108 612-721 (764)
58 cd00293 USP_Like Usp: Universa 37.7 53 0.0012 21.9 3.5 26 8-33 9-34 (130)
59 COG1222 RPT1 ATP-dependent 26S 34.6 78 0.0017 28.5 4.8 25 12-36 230-254 (406)
60 COG2838 Icd Monomeric isocitra 34.5 3.2E+02 0.007 26.0 8.8 124 5-140 462-594 (744)
61 cd03470 Rieske_cytochrome_bc1 34.4 46 0.00099 24.8 2.9 26 125-150 85-110 (126)
62 PF01515 PTA_PTB: Phosphate ac 34.1 3E+02 0.0065 23.6 8.3 93 9-108 175-284 (319)
63 PRK09732 hypothetical protein; 33.7 76 0.0016 24.1 4.1 34 4-37 5-40 (134)
64 KOG3040|consensus 33.1 88 0.0019 26.4 4.6 81 14-99 126-213 (262)
65 COG3193 GlcG Uncharacterized p 33.0 74 0.0016 24.6 3.9 30 5-34 7-38 (141)
66 cd01987 USP_OKCHK USP domain i 31.8 63 0.0014 22.3 3.2 25 9-33 10-34 (124)
67 PF14542 Acetyltransf_CG: GCN5 31.7 50 0.0011 22.3 2.6 32 11-51 40-71 (78)
68 KOG1502|consensus 31.0 2.8E+02 0.0062 24.2 7.6 76 13-95 169-259 (327)
69 COG1533 SplB DNA repair photol 30.7 85 0.0018 26.8 4.3 34 5-38 95-128 (297)
70 PF07820 TraC: TraC-like prote 28.6 92 0.002 22.5 3.5 37 9-58 24-60 (92)
71 PF07993 NAD_binding_4: Male s 28.2 2.5E+02 0.0054 22.3 6.5 73 7-79 167-248 (249)
72 COG4862 MecA Negative regulato 27.3 84 0.0018 26.2 3.6 54 36-103 33-89 (224)
73 PF03928 DUF336: Domain of unk 27.2 91 0.002 22.8 3.5 32 5-36 2-35 (132)
74 PRK09653 eutD phosphotransacet 26.3 4.1E+02 0.0089 22.7 9.7 95 7-109 173-284 (324)
75 KOG2244|consensus 26.0 2.4E+02 0.0052 27.1 6.6 93 14-122 100-207 (786)
76 PF03358 FMN_red: NADPH-depend 26.0 1.9E+02 0.0041 20.9 5.0 75 6-98 11-85 (152)
77 COG1331 Highly conserved prote 23.9 3.7E+02 0.0079 26.0 7.5 74 13-94 30-119 (667)
78 PRK15118 universal stress glob 23.8 1.1E+02 0.0025 21.7 3.4 26 9-34 14-39 (144)
79 KOG0174|consensus 23.7 1.2E+02 0.0027 25.0 3.8 34 6-39 166-205 (224)
80 COG3689 Predicted membrane pro 23.6 66 0.0014 27.5 2.4 32 37-70 151-182 (271)
81 PF00175 NAD_binding_1: Oxidor 23.2 2.4E+02 0.0052 18.9 7.1 74 14-92 14-99 (109)
82 KOG4236|consensus 23.1 1.8E+02 0.004 28.0 5.3 67 29-109 594-660 (888)
83 COG4782 Uncharacterized protei 23.1 1.2E+02 0.0026 27.1 4.0 105 2-137 161-277 (377)
84 KOG1638|consensus 22.9 61 0.0013 27.5 2.0 34 71-104 164-207 (257)
85 PRK13695 putative NTPase; Prov 22.1 3.4E+02 0.0074 20.2 7.4 79 8-93 79-159 (174)
86 PRK10116 universal stress prot 21.5 1.3E+02 0.0028 21.3 3.3 27 9-35 14-40 (142)
87 PRK02487 hypothetical protein; 21.4 1.8E+02 0.0038 22.4 4.2 34 4-37 21-56 (163)
88 PRK00730 rnpA ribonuclease P; 20.6 3.7E+02 0.008 20.6 5.8 53 5-58 59-113 (138)
89 COG4837 Uncharacterized protei 20.2 1.3E+02 0.0027 22.2 2.9 23 47-75 30-52 (106)
No 1
>COG0473 LeuB Isocitrate/isopropylmalate dehydrogenase [Amino acid transport and metabolism]
Probab=100.00 E-value=6.6e-63 Score=421.30 Aligned_cols=141 Identities=24% Similarity=0.255 Sum_probs=135.4
Q ss_pred cccchHHHHHHHHHHHHHHHhC-CCCEEEEeCCCcccccchHHHHHHHHHHHhhcccccccCCeEEeeeeHHHHHHHHHh
Q psy12309 4 DSRPESTFWIFGKPTYNVALQK-KWPLYLSTKNTILKKYDGHFKDIFQEVYEKNYKSQFEQAKIWYEHRLIDDMVAQALK 82 (152)
Q Consensus 4 ~~~t~~~~eRiar~AF~~A~~r-~~~Vt~v~KaNvl~~~dglf~~v~~eva~~~yp~~f~~~~I~~~~~~iD~~~~~lv~ 82 (152)
.++||+++|||+|+||++|++| +++||++||+|||+.+++|||++++|++ ++|| +|+++|+|||+++||||+
T Consensus 151 ~~~Tr~~~eRI~r~AFe~A~~R~~kkvTsv~KaNVl~~s~~lwrev~~eva-~~yP------dv~~~~~~VD~aam~lV~ 223 (348)
T COG0473 151 KVITRKGSERIARFAFELARKRGRKKVTSVHKANVLKLSDGLWREVVEEVA-KEYP------DVELDHMYVDAAAMQLVR 223 (348)
T ss_pred EeccHHHHHHHHHHHHHHHHhhCCCceEEEehhhhhhhhhHHHHHHHHHHh-hcCC------CcchhHHhHHHHHHHHhh
Confidence 4699999999999999999999 5699999999999999999999999999 9999 999999999999999999
Q ss_pred CCCCe-EEEecCCchhhhhhhhhhhcCCCccccccccCCCCCeEEEecCCCCcccccccccCCccccccC
Q psy12309 83 GNGGF-VWACKNYDGDVQSDIVAQGYGSLGLMTSILMCPDGKTIESEAAHGTVTRHYRFLGINDINTNVS 151 (152)
Q Consensus 83 ~P~~f-Viv~~Nl~GDIlSDlaa~l~GglGl~psanig~~~~~a~fEp~HGsApdiagk~~anp~~~~~~ 151 (152)
+|++| ||||+|||||||||+||+|+|||||+||+|+|++..++||||+||||||||||++|||+|++.|
T Consensus 224 ~P~~FDViVt~NlFGDILSD~aa~l~GslGl~PSAnig~~~~~~lfEPvHGSAPDIAGkgiANPiA~IlS 293 (348)
T COG0473 224 NPEQFDVIVTSNLFGDILSDEAAALTGSLGLAPSANLGDERGPALFEPVHGSAPDIAGKGIANPIATILS 293 (348)
T ss_pred CccccCEEEEccchhHHHHhHHHHhcCccccCccCccCCCCCCceeecCCCCcccccCCCccChHHHHHH
Confidence 99999 9999999999999999999999999999999985337999999999999999999999999876
No 2
>PRK08997 isocitrate dehydrogenase; Provisional
Probab=100.00 E-value=1.3e-59 Score=402.10 Aligned_cols=139 Identities=22% Similarity=0.218 Sum_probs=134.1
Q ss_pred cccchHHHHHHHHHHHHHHHhCCC-CEEEEeCCCcccccchHHHHHHHHHHHhhcccccccCCeEEeeeeHHHHHHHHHh
Q psy12309 4 DSRPESTFWIFGKPTYNVALQKKW-PLYLSTKNTILKKYDGHFKDIFQEVYEKNYKSQFEQAKIWYEHRLIDDMVAQALK 82 (152)
Q Consensus 4 ~~~t~~~~eRiar~AF~~A~~r~~-~Vt~v~KaNvl~~~dglf~~v~~eva~~~yp~~f~~~~I~~~~~~iD~~~~~lv~ 82 (152)
.++||+++|||+|+||+||++|++ +||++||+|||+.|||+|+++|+|++ ++|| +|++++++||++|||||+
T Consensus 142 ~~~Tr~~~eRi~r~Af~~A~~r~~~~Vt~v~KaNvl~~t~glf~~~~~eva-~~yP------~V~~~~~~vDa~~~~lv~ 214 (334)
T PRK08997 142 SIITRKGAERIVRFAYELARKEGRKKVTAVHKANIMKSTSGLFLKVAREVA-LRYP------DIEFEEMIVDATCMQLVM 214 (334)
T ss_pred EEeeHHHHHHHHHHHHHHHHhcCCCeEEEEeCCCcchhhhHHHHHHHHHHH-hhCC------CeEEEeeeHHHHHHHHhh
Confidence 468999999999999999999976 69999999999999999999999998 7899 999999999999999999
Q ss_pred CCCCe-EEEecCCchhhhhhhhhhhcCCCccccccccCCCCCeEEEecCCCCcccccccccCCccccccC
Q psy12309 83 GNGGF-VWACKNYDGDVQSDIVAQGYGSLGLMTSILMCPDGKTIESEAAHGTVTRHYRFLGINDINTNVS 151 (152)
Q Consensus 83 ~P~~f-Viv~~Nl~GDIlSDlaa~l~GglGl~psanig~~~~~a~fEp~HGsApdiagk~~anp~~~~~~ 151 (152)
+|++| ||||+|||||||||++|+++||+||+||+|+|++ ++||||+|||||||+||++|||++++.|
T Consensus 215 ~P~~fdVivt~NlfGDILSDlaa~l~GglGl~psanig~~--~a~FEp~HGSAPdIAGk~iANP~a~IlS 282 (334)
T PRK08997 215 NPEQFDVIVTTNLFGDILSDLCAGLVGGLGMAPGANIGRD--AAIFEAVHGSAPDIAGKNLANPTSVILA 282 (334)
T ss_pred CcccCcEEEEcCcccchhhHHHHHhcCCCCcCcceeECCC--ceEEECCCCchhhhCCCCccCcHHHHHH
Confidence 99999 9999999999999999999999999999999987 6999999999999999999999999875
No 3
>PRK03437 3-isopropylmalate dehydrogenase; Provisional
Probab=100.00 E-value=2e-59 Score=402.28 Aligned_cols=141 Identities=18% Similarity=0.182 Sum_probs=134.2
Q ss_pred cccchHHHHHHHHHHHHHHHhCCC-CEEEEeCCCcccccchHHHHHHHHHHHhhcccccccCCeEEeeeeHHHHHHHHHh
Q psy12309 4 DSRPESTFWIFGKPTYNVALQKKW-PLYLSTKNTILKKYDGHFKDIFQEVYEKNYKSQFEQAKIWYEHRLIDDMVAQALK 82 (152)
Q Consensus 4 ~~~t~~~~eRiar~AF~~A~~r~~-~Vt~v~KaNvl~~~dglf~~v~~eva~~~yp~~f~~~~I~~~~~~iD~~~~~lv~ 82 (152)
.++|++++|||+|+||+||++|++ +||++||+|||+.++|||+++|+||+ ++|| +|++++++||++|||||+
T Consensus 155 ~~~Tr~~~~RIa~~AF~~A~~r~~k~Vt~v~KaNvl~~t~glf~~~~~eva-~~yp------dV~~~~~~vDa~~~~Lv~ 227 (344)
T PRK03437 155 SVNTAFGVERVVRDAFERAQKRPRKHLTLVHKTNVLTFAGDLWQRTVDEVA-AEYP------DVTVDYQHVDAATIFMVT 227 (344)
T ss_pred EEecHHHHHHHHHHHHHHHHhCCCCeEEEEECCccccccchHHHHHHHHHH-hhCC------CceEeehhHHHHHHHHhc
Confidence 468999999999999999999965 69999999999999999999999998 8999 999999999999999999
Q ss_pred CCCCe-EEEecCCchhhhhhhhhhhcCCCccccccccCCCCC-eEEEecCCCCcccccccccCCccccccC
Q psy12309 83 GNGGF-VWACKNYDGDVQSDIVAQGYGSLGLMTSILMCPDGK-TIESEAAHGTVTRHYRFLGINDINTNVS 151 (152)
Q Consensus 83 ~P~~f-Viv~~Nl~GDIlSDlaa~l~GglGl~psanig~~~~-~a~fEp~HGsApdiagk~~anp~~~~~~ 151 (152)
+|++| ||||+|||||||||++|+++||||++||+|+|+++. ++||||+|||||||+||++|||++++.|
T Consensus 228 ~P~~fDVIVt~NlfGDILSDlaa~l~GglGl~pSanig~~g~~~a~FEp~HGSAPdiAGk~iANP~a~IlS 298 (344)
T PRK03437 228 DPSRFDVIVTDNLFGDIITDLAAAVTGGIGLAASGNINPTGTNPSMFEPVHGSAPDIAGQGIADPTAAILS 298 (344)
T ss_pred CcccCcEEEEcccchhhhhHHHHHhcCCccccceeeecCCCCcceeEecCCCCchhhcCCCccChHHHHHH
Confidence 99999 999999999999999999999999999999997652 4899999999999999999999999865
No 4
>PLN02329 3-isopropylmalate dehydrogenase
Probab=100.00 E-value=1.2e-59 Score=410.26 Aligned_cols=139 Identities=18% Similarity=0.204 Sum_probs=134.4
Q ss_pred cccchHHHHHHHHHHHHHHHhCCCCEEEEeCCCcccccchHHHHHHHHHHHhhcccccccCCeEEeeeeHHHHHHHHHhC
Q psy12309 4 DSRPESTFWIFGKPTYNVALQKKWPLYLSTKNTILKKYDGHFKDIFQEVYEKNYKSQFEQAKIWYEHRLIDDMVAQALKG 83 (152)
Q Consensus 4 ~~~t~~~~eRiar~AF~~A~~r~~~Vt~v~KaNvl~~~dglf~~v~~eva~~~yp~~f~~~~I~~~~~~iD~~~~~lv~~ 83 (152)
+++||+++|||+|+||+||++|+++||++||+|||+ +++||+++|+||+ ++|| +|++++++||++|||||++
T Consensus 206 ~~iTr~~~eRI~r~AFe~A~~r~~kVT~v~KaNVl~-t~~lf~~~~~evA-~eyP------dV~~~~~~VDa~a~~LV~~ 277 (409)
T PLN02329 206 EIYAAHEIDRIARVAFETARKRRGKLCSVDKANVLD-ASILWRKRVTALA-SEYP------DVELSHMYVDNAAMQLIRD 277 (409)
T ss_pred EEecHHHHHHHHHHHHHHHHHcCCeEEEEECCCCcc-chHHHHHHHHHHH-hhCC------CcccchhHHHHHHHHHhcC
Confidence 478999999999999999999988999999999999 9999999999998 8999 9999999999999999999
Q ss_pred CCCe-EEEecCCchhhhhhhhhhhcCCCccccccccCCCCCeEEEecCCCCcccccccccCCccccccC
Q psy12309 84 NGGF-VWACKNYDGDVQSDIVAQGYGSLGLMTSILMCPDGKTIESEAAHGTVTRHYRFLGINDINTNVS 151 (152)
Q Consensus 84 P~~f-Viv~~Nl~GDIlSDlaa~l~GglGl~psanig~~~~~a~fEp~HGsApdiagk~~anp~~~~~~ 151 (152)
|++| ||||+|||||||||++|+|+|||||+||+|+|+++ ++||||+|||||||+|||+|||++++.|
T Consensus 278 P~~FDVIVt~NLfGDILSDlaa~l~GglGlaPSanig~~~-~a~FEpvHGSAPdIAGk~iANP~A~ILS 345 (409)
T PLN02329 278 PKQFDTIVTNNIFGDILSDEASMITGSIGMLPSASLGESG-PGLFEPIHGSAPDIAGQDKANPLATILS 345 (409)
T ss_pred chhCCEEEEcCcccccccHHHHHhcCCcccCceeecCCCC-ceeeeccCCCchhhcCCcccChHHHHHH
Confidence 9999 99999999999999999999999999999999886 6899999999999999999999999875
No 5
>PRK08194 tartrate dehydrogenase; Provisional
Probab=100.00 E-value=2.5e-59 Score=402.60 Aligned_cols=141 Identities=22% Similarity=0.198 Sum_probs=134.6
Q ss_pred cccchHHHHHHHHHHHHHHHhCCCCEEEEeCCCcccccchHHHHHHHHHHHhhcccccccCCeEEeeeeHHHHHHHHHhC
Q psy12309 4 DSRPESTFWIFGKPTYNVALQKKWPLYLSTKNTILKKYDGHFKDIFQEVYEKNYKSQFEQAKIWYEHRLIDDMVAQALKG 83 (152)
Q Consensus 4 ~~~t~~~~eRiar~AF~~A~~r~~~Vt~v~KaNvl~~~dglf~~v~~eva~~~yp~~f~~~~I~~~~~~iD~~~~~lv~~ 83 (152)
.++|++++|||+|+||+||++|+++||++||+|||+.+++|||++|+||+ ++|| +|++++++||++|||||++
T Consensus 156 ~~~Tr~~~eRI~r~Af~~A~~r~~~Vt~v~KaNvl~~t~~lf~~~~~eva-~~yp------~V~~~~~~vDa~~~~Lv~~ 228 (352)
T PRK08194 156 AVFTRKGTERAMRYAFELAAKRRKHVTSATKSNGIVHSMPFWDEVFQEVG-KDYP------EIETDSQHIDALAAFFVTR 228 (352)
T ss_pred EEeeHHHHHHHHHHHHHHHHHcCCcEEEEeCcchhhhhHHHHHHHHHHHH-hhCC------CceeeehhHHHHHHHHhhC
Confidence 47899999999999999999997789999999999999999999999998 8999 9999999999999999999
Q ss_pred CCCe-EEEecCCchhhhhhhhhhhcCCCccccccccCCCCC-eEEEecCCCCcccccccccCCccccccC
Q psy12309 84 NGGF-VWACKNYDGDVQSDIVAQGYGSLGLMTSILMCPDGK-TIESEAAHGTVTRHYRFLGINDINTNVS 151 (152)
Q Consensus 84 P~~f-Viv~~Nl~GDIlSDlaa~l~GglGl~psanig~~~~-~a~fEp~HGsApdiagk~~anp~~~~~~ 151 (152)
|++| ||||+|||||||||++|+++|||||+||+|+|+++. ++||||+|||||||+||++|||++++.|
T Consensus 229 P~~fDVIVt~NlfGDILSDlaa~l~GslGl~pSanig~~~~~~alFEp~HGSAPdiAGk~iANP~a~IlS 298 (352)
T PRK08194 229 PEEFDVIVASNLFGDILTDIGAAIMGSIGIAPAANINVNGKYPSMFEPVHGSAPDIAGKGIANPIGQIWT 298 (352)
T ss_pred hhhCcEEEEccchHHHHhHHHHHhcCCccccceeeecCCCCcceEEECCCCCchhhCCCCcCCcHHHHHH
Confidence 9999 999999999999999999999999999999997642 4899999999999999999999999865
No 6
>TIGR00169 leuB 3-isopropylmalate dehydrogenase. This model will not find all isopropylmalate dehydrogenases; the enzyme from Sulfolobus sp. strain 7 is more similar to mitochondrial NAD-dependent isocitrate dehydrogenases than to other known isopropylmalate dehydrogenases and was omitted to improve the specificity of the model. It scores below the cutoff and below some enzymes known not to be isopropylmalate dehydrogenase.
Probab=100.00 E-value=4e-59 Score=401.05 Aligned_cols=139 Identities=23% Similarity=0.260 Sum_probs=134.2
Q ss_pred cccchHHHHHHHHHHHHHHHhCCCCEEEEeCCCcccccchHHHHHHHHHHHhhcccccccCCeEEeeeeHHHHHHHHHhC
Q psy12309 4 DSRPESTFWIFGKPTYNVALQKKWPLYLSTKNTILKKYDGHFKDIFQEVYEKNYKSQFEQAKIWYEHRLIDDMVAQALKG 83 (152)
Q Consensus 4 ~~~t~~~~eRiar~AF~~A~~r~~~Vt~v~KaNvl~~~dglf~~v~~eva~~~yp~~f~~~~I~~~~~~iD~~~~~lv~~ 83 (152)
.++||+++|||+|+||+||++|+++||++||+|||+ ++|+|+++|+||+ ++|| +|++++++||+++|+||++
T Consensus 158 ~~~Tr~~~eRI~r~AF~~A~~r~~~Vt~v~KaNvlk-t~glf~~~~~eva-~~yP------~I~~~~~~vDa~~~~Lv~~ 229 (349)
T TIGR00169 158 EVYTKPEIERIARVAFEMARKRRKKVTSVDKANVLE-SSRLWRKTVEEIA-KEYP------DVELEHQYIDNAAMQLVKS 229 (349)
T ss_pred EEeeHHHHHHHHHHHHHHHHHcCCcEEEEECCcccc-hhHHHHHHHHHHH-hhCC------CceEEeeeHHHHHHHHHhC
Confidence 468999999999999999999988999999999999 9999999999998 7999 9999999999999999999
Q ss_pred CCCe-EEEecCCchhhhhhhhhhhcCCCccccccccCCCCCeEEEecCCCCcccccccccCCccccccC
Q psy12309 84 NGGF-VWACKNYDGDVQSDIVAQGYGSLGLMTSILMCPDGKTIESEAAHGTVTRHYRFLGINDINTNVS 151 (152)
Q Consensus 84 P~~f-Viv~~Nl~GDIlSDlaa~l~GglGl~psanig~~~~~a~fEp~HGsApdiagk~~anp~~~~~~ 151 (152)
|++| ||||+|||||||||++|+++||||++||+|+|+++ ++||||+|||||||+||++|||++++.|
T Consensus 230 P~~fDViv~~NlfGDILSDlaa~l~GglGlapSanig~~~-~a~FEp~HGSAPdiAGk~iANP~a~IlS 297 (349)
T TIGR00169 230 PTQFDVVVTGNIFGDILSDEASVIPGSLGMLPSASLGSDG-FGLFEPVHGSAPDIAGKGIANPIAQILS 297 (349)
T ss_pred ccCceEEEEcCcccchhhHHHHHhcCCCCCCceEEECCCC-CEEEECCCCChhHhcCCCCCChHHHHHH
Confidence 9999 99999999999999999999999999999999776 7999999999999999999999999865
No 7
>PLN00118 isocitrate dehydrogenase (NAD+)
Probab=100.00 E-value=4.6e-59 Score=403.04 Aligned_cols=140 Identities=26% Similarity=0.271 Sum_probs=134.6
Q ss_pred cccchHHHHHHHHHHHHHHHhCCC-CEEEEeCCCcccccchHHHHHHHHHHHhhcccccccCCeEEeeeeHHHHHHHHHh
Q psy12309 4 DSRPESTFWIFGKPTYNVALQKKW-PLYLSTKNTILKKYDGHFKDIFQEVYEKNYKSQFEQAKIWYEHRLIDDMVAQALK 82 (152)
Q Consensus 4 ~~~t~~~~eRiar~AF~~A~~r~~-~Vt~v~KaNvl~~~dglf~~v~~eva~~~yp~~f~~~~I~~~~~~iD~~~~~lv~ 82 (152)
+++|++++|||+|+||+||++|++ +||++||+|||+.+||+|+++|+||+ ++|| +|++++++||++|||||+
T Consensus 179 ~v~Tr~~~eRIar~AF~~A~~r~~k~Vt~v~KaNvlk~tdglf~e~~~eva-~eyP------dI~~~~~~VDa~a~~Lv~ 251 (372)
T PLN00118 179 KIITRQASLRVAEYAFHYAKTHGRKRVSAIHKANIMKKTDGLFLKCCREVA-EKYP------EIVYEEVIIDNCCMMLVK 251 (372)
T ss_pred EecCHHHHHHHHHHHHHHHHHcCCCeEEEEECCccchhhhHHHHHHHHHHH-hhCC------CceEEeeeHHHHHHHhcc
Confidence 468999999999999999999976 59999999999999999999999998 7899 999999999999999999
Q ss_pred CCCCe-EEEecCCchhhhhhhhhhhcCCCccccccccCCCCCeEEEecCCCCcccccccccCCccccccC
Q psy12309 83 GNGGF-VWACKNYDGDVQSDIVAQGYGSLGLMTSILMCPDGKTIESEAAHGTVTRHYRFLGINDINTNVS 151 (152)
Q Consensus 83 ~P~~f-Viv~~Nl~GDIlSDlaa~l~GglGl~psanig~~~~~a~fEp~HGsApdiagk~~anp~~~~~~ 151 (152)
+|++| ||||+|||||||||++|+++||+||+||+|+|+++ ++||||+|||||||+||++|||++++.|
T Consensus 252 ~P~~fDViVt~NLfGDILSDlaa~l~GglGlapSanig~~~-~a~FEpvHGSAPdIAGk~iANP~A~IlS 320 (372)
T PLN00118 252 NPALFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGENG-LALAEAVHGSAPDIAGKNLANPTALLLS 320 (372)
T ss_pred CcccCcEEEEcCcccchhhHHHHHhcCCcccCcceeecCCC-CeEEECCCCChhhhCCCCCcCcHHHHHH
Confidence 99999 99999999999999999999999999999999886 6999999999999999999999999765
No 8
>PRK14025 multifunctional 3-isopropylmalate dehydrogenase/D-malate dehydrogenase; Provisional
Probab=100.00 E-value=5.3e-59 Score=397.75 Aligned_cols=139 Identities=27% Similarity=0.207 Sum_probs=133.8
Q ss_pred cccchHHHHHHHHHHHHHHHhC----CC-CEEEEeCCCcccccchHHHHHHHHHHHhhcccccccCCeEEeeeeHHHHHH
Q psy12309 4 DSRPESTFWIFGKPTYNVALQK----KW-PLYLSTKNTILKKYDGHFKDIFQEVYEKNYKSQFEQAKIWYEHRLIDDMVA 78 (152)
Q Consensus 4 ~~~t~~~~eRiar~AF~~A~~r----~~-~Vt~v~KaNvl~~~dglf~~v~~eva~~~yp~~f~~~~I~~~~~~iD~~~~ 78 (152)
.++||+++|||+|+||+||++| ++ +||++||+|||+.+||||+++|+||+ ++|| +|++++++||++||
T Consensus 135 ~~~Tr~~~~Ri~r~Af~~A~~r~~~~~~k~Vt~v~KaNvl~~t~glf~e~~~eva-~~yp------~i~~~~~~vDa~~~ 207 (330)
T PRK14025 135 RVITRKASERIFRFAFEMAKRRKKMGKEGKVTCAHKANVLKKTDGLFKKTFYEVA-KEYP------DIKAEDYYVDAMNM 207 (330)
T ss_pred EeccHHHHHHHHHHHHHHHHhccccCCCCeEEEEECCCchhhhhHHHHHHHHHHH-hhCC------CeEEEeeeHHHHHH
Confidence 5789999999999999999999 45 69999999999999999999999998 7999 99999999999999
Q ss_pred HHHhCCCCe-EEEecCCchhhhhhhhhhhcCCCccccccccCCCCCeEEEecCCCCcccccccccCCccccccC
Q psy12309 79 QALKGNGGF-VWACKNYDGDVQSDIVAQGYGSLGLMTSILMCPDGKTIESEAAHGTVTRHYRFLGINDINTNVS 151 (152)
Q Consensus 79 ~lv~~P~~f-Viv~~Nl~GDIlSDlaa~l~GglGl~psanig~~~~~a~fEp~HGsApdiagk~~anp~~~~~~ 151 (152)
+||++|++| ||||+|||||||||++|+++||+||+||+|+|++ ++||||+|||||||+||++|||++++.|
T Consensus 208 ~lv~~P~~fDVivt~NlfGDILSDlaa~l~GglGl~psanig~~--~a~FEp~HGSAPdiAGk~iANP~a~IlS 279 (330)
T PRK14025 208 YIITRPQTFDVVVTSNLFGDILSDGAAGLVGGLGLAPSANIGDK--YGLFEPVHGSAPDIAGKGIANPTATILT 279 (330)
T ss_pred HHhcCcccCcEEEEcCcccchhhHHHHHhcCCCCcccceeeCCC--cceeEcCCCCchhhCCCCCcCcHHHHHH
Confidence 999999999 9999999999999999999999999999999987 6999999999999999999999999865
No 9
>TIGR02089 TTC tartrate dehydrogenase. Tartrate dehydrogenase catalyzes the oxidation of both meso- and (+)-tartrate as well as a D-malate. These enzymes are closely related to the 3-isopropylmalate and isohomocitrate dehydrogenases found in TIGR00169 and TIGR02088, respectively.
Probab=100.00 E-value=4.4e-59 Score=401.16 Aligned_cols=141 Identities=23% Similarity=0.241 Sum_probs=134.2
Q ss_pred cccchHHHHHHHHHHHHHHHhCCCCEEEEeCCCcccccchHHHHHHHHHHHhhcccccccCCeEEeeeeHHHHHHHHHhC
Q psy12309 4 DSRPESTFWIFGKPTYNVALQKKWPLYLSTKNTILKKYDGHFKDIFQEVYEKNYKSQFEQAKIWYEHRLIDDMVAQALKG 83 (152)
Q Consensus 4 ~~~t~~~~eRiar~AF~~A~~r~~~Vt~v~KaNvl~~~dglf~~v~~eva~~~yp~~f~~~~I~~~~~~iD~~~~~lv~~ 83 (152)
+++|++++|||+|+||+||++|+++||++||+|||+.++||||++|+|++ ++|| +|++++++||++|||||++
T Consensus 159 ~~~tr~~~eRi~r~Af~~A~~rr~kVt~v~KaNvl~~t~~lf~~~~~eva-~~yp------~v~~~~~~vD~~~~~lv~~ 231 (352)
T TIGR02089 159 AIFTRKGVERIMRFAFELAQKRRKHLTSATKSNGIRHSMPFWDEVFAEVA-AEYP------DVEWDSYHIDALAARFVLK 231 (352)
T ss_pred EEecHHHHHHHHHHHHHHHHHcCCCEEEEeCCcchhhhhHHHHHHHHHHH-hhCC------CceEeeehHHHHHHHHhcC
Confidence 47899999999999999999996689999999999999999999999998 8999 9999999999999999999
Q ss_pred CCCe-EEEecCCchhhhhhhhhhhcCCCccccccccCCCCC-eEEEecCCCCcccccccccCCccccccC
Q psy12309 84 NGGF-VWACKNYDGDVQSDIVAQGYGSLGLMTSILMCPDGK-TIESEAAHGTVTRHYRFLGINDINTNVS 151 (152)
Q Consensus 84 P~~f-Viv~~Nl~GDIlSDlaa~l~GglGl~psanig~~~~-~a~fEp~HGsApdiagk~~anp~~~~~~ 151 (152)
|++| ||||+|||||||||++|+++|||||+||+|+|+++. ++||||+|||||||+||++|||++++.|
T Consensus 232 P~~fDVivt~NlfGDILSD~aa~l~GglGl~psanig~~~~~~a~fEp~HGSAPdiAGk~iANP~a~Ils 301 (352)
T TIGR02089 232 PETFDVIVASNLFGDILSDLGAALMGSLGVAPSANINPEGKFPSMFEPVHGSAPDIAGKGIANPIGAIWT 301 (352)
T ss_pred hhhCcEEEecccchhhhhHHHHHhcCCccccceEEecCCCCcceeeecCCCCchhhcCCCccCcHHHHHH
Confidence 9999 999999999999999999999999999999997642 3899999999999999999999999865
No 10
>PTZ00435 isocitrate dehydrogenase; Provisional
Probab=100.00 E-value=6.8e-59 Score=405.83 Aligned_cols=149 Identities=66% Similarity=1.101 Sum_probs=140.7
Q ss_pred ccccchHHHHHHHHHHHHHHHhCCCCEEEEeCCCcccccchHHHHHHHHHHHhhcccccccCCeEEeeeeHHHHHHHHHh
Q psy12309 3 ADSRPESTFWIFGKPTYNVALQKKWPLYLSTKNTILKKYDGHFKDIFQEVYEKNYKSQFEQAKIWYEHRLIDDMVAQALK 82 (152)
Q Consensus 3 ~~~~t~~~~eRiar~AF~~A~~r~~~Vt~v~KaNvl~~~dglf~~v~~eva~~~yp~~f~~~~I~~~~~~iD~~~~~lv~ 82 (152)
..++|++++|||+|+||+||++|+++||++||+||||.+||+||++|+||++++||++|..++|++++++||++|||||+
T Consensus 182 ~~~~Tr~~~eRIar~AF~~A~~r~~~Vt~v~KaNVlk~~dglf~~~~~eva~~eYpe~~~~~~I~~~~~lVDa~~m~lv~ 261 (413)
T PTZ00435 182 GMYNTDESIEGFARSCFQYALDRKMPLYLSTKNTILKKYDGRFKDIFQEIYDEEYKAKFEKAGLWYEHRLIDDMVAQAIK 261 (413)
T ss_pred EEEeCHHHHHHHHHHHHHHHHHcCCCEEEECCCCcchhhHHHHHHHHHHHHHHhCccccccCCEEEEEeeHHHHHHHHhh
Confidence 34799999999999999999999889999999999999999999999999866899999999999999999999999999
Q ss_pred CCCCeEEEecCCchhhhhhhhhhhcCCCccccccccCCCCCeEEEecCCCCcccc-----ccc-ccCCccccccC
Q psy12309 83 GNGGFVWACKNYDGDVQSDIVAQGYGSLGLMTSILMCPDGKTIESEAAHGTVTRH-----YRF-LGINDINTNVS 151 (152)
Q Consensus 83 ~P~~fViv~~Nl~GDIlSDlaa~l~GglGl~psanig~~~~~a~fEp~HGsApdi-----agk-~~anp~~~~~~ 151 (152)
+|++|||||+|||||||||++|+++|||||+||+|+|+++.+++|||+||||||| +|| ++|||+|++.|
T Consensus 262 ~P~~fViV~~NlfGDIlSDlaA~l~GglGlapSanig~d~~~a~FEp~HGSApdi~~~~iaGk~~~ANP~A~Ils 336 (413)
T PTZ00435 262 SEGGFVWACKNYDGDVQSDIVAQGYGSLGLMTSVLVCPDGKTVEAEAAHGTVTRHYRQHQKGKETSTNSIASIFA 336 (413)
T ss_pred CCCCeEEEeecccchhhhHHHHHhcCcccccccceeCCCCCeEEEEcCcCCccccchhhhcCCCCccChHHHHHH
Confidence 9999999999999999999999999999999999999885239999999999998 885 78999999765
No 11
>PRK06451 isocitrate dehydrogenase; Validated
Probab=100.00 E-value=7.1e-59 Score=406.27 Aligned_cols=145 Identities=19% Similarity=0.200 Sum_probs=138.0
Q ss_pred ccchHHHHHHHHHHHHHHHhCCC-CEEEEeCCCcccccchHHHHHHHHHHHhhccc--------------ccccCCeEEe
Q psy12309 5 SRPESTFWIFGKPTYNVALQKKW-PLYLSTKNTILKKYDGHFKDIFQEVYEKNYKS--------------QFEQAKIWYE 69 (152)
Q Consensus 5 ~~t~~~~eRiar~AF~~A~~r~~-~Vt~v~KaNvl~~~dglf~~v~~eva~~~yp~--------------~f~~~~I~~~ 69 (152)
++|+.++|||+|+||+||++|++ +||++||+|||+.|||+||++|+|+++++||+ +|++.+|+++
T Consensus 192 ~~t~~~~eRIar~AF~~A~~r~~kkVt~v~KaNVlk~t~glf~~~~~eva~~eypd~~~~~~~~~~~y~~~~~~~~I~~~ 271 (412)
T PRK06451 192 LISKFKTQRIARMAIKYAIDHKRKKVTIMHKGNVMKYTEGAFREWAYEVALKEFRDYVVTEEEVTKNYNGVPPSGKVIIN 271 (412)
T ss_pred eeeHHHHHHHHHHHHHHHHhcCCCcEEEEECCCccccchhhHHHHHHHHHHHhCCcccccccchhhccccccccCceEEE
Confidence 68999999999999999999976 79999999999999999999999999658985 6777789999
Q ss_pred eeeHHHHHHHHHhCCCCe-EEEecCCchhhhhhhhhhhcCCCccccccccCCCCCeEEEecCCCCcccccccccCCcccc
Q psy12309 70 HRLIDDMVAQALKGNGGF-VWACKNYDGDVQSDIVAQGYGSLGLMTSILMCPDGKTIESEAAHGTVTRHYRFLGINDINT 148 (152)
Q Consensus 70 ~~~iD~~~~~lv~~P~~f-Viv~~Nl~GDIlSDlaa~l~GglGl~psanig~~~~~a~fEp~HGsApdiagk~~anp~~~ 148 (152)
|+|||++|||||++|++| ||||+|||||||||++|+++|||||+||+|+|++ ++||||+|||||||+||++|||+++
T Consensus 272 ~~~vDa~~~~Lv~~P~~FDVivt~NlfGDILSDlaa~l~GglGl~pSanig~~--~alFEpvHGSAPdiAGk~iANP~a~ 349 (412)
T PRK06451 272 DRIADNMFQQIIIRPDEYDIILAPNVNGDYISDAAGALVGNIGMLGGANIGDT--GGMFEAIHGTAPKYAGKNVANPTGI 349 (412)
T ss_pred eeeHHHHHHHHhcCcccCcEEEEcCcccchhhHHHHHhcCchhhcceeeeCCC--CceeECCCCCccccCCCCCcCcHHH
Confidence 999999999999999999 9999999999999999999999999999999988 5899999999999999999999999
Q ss_pred ccC
Q psy12309 149 NVS 151 (152)
Q Consensus 149 ~~~ 151 (152)
+.|
T Consensus 350 IlS 352 (412)
T PRK06451 350 IKG 352 (412)
T ss_pred HHH
Confidence 865
No 12
>PRK08299 isocitrate dehydrogenase; Validated
Probab=100.00 E-value=8.8e-59 Score=404.20 Aligned_cols=146 Identities=63% Similarity=0.997 Sum_probs=139.8
Q ss_pred ccchHHHHHHHHHHHHHHHhCCCCEEEEeCCCcccccchHHHHHHHHHHHhhcccccccCCeEEeeeeHHHHHHHHHhCC
Q psy12309 5 SRPESTFWIFGKPTYNVALQKKWPLYLSTKNTILKKYDGHFKDIFQEVYEKNYKSQFEQAKIWYEHRLIDDMVAQALKGN 84 (152)
Q Consensus 5 ~~t~~~~eRiar~AF~~A~~r~~~Vt~v~KaNvl~~~dglf~~v~~eva~~~yp~~f~~~~I~~~~~~iD~~~~~lv~~P 84 (152)
++|++++|||+|+||+||++|+++||++||+|||+.+|||||++|+|||+++||++|..++|++++++||++|||||++|
T Consensus 181 ~~Tr~~~eRIa~~AF~~A~~r~~kVt~v~KaNVlk~t~glf~~~~~evA~~~yp~~~~~~~i~~~~~~vDa~~~~lv~~P 260 (402)
T PRK08299 181 YNLDESIRDFARASFNYGLDRKYPVYLSTKNTILKAYDGRFKDIFQEVYEAEFKEKFEAAGITYEHRLIDDMVASALKWE 260 (402)
T ss_pred eecHHHHHHHHHHHHHHHHHcCCCEEEECCCCcchhhhHHHHHHHHHHHHHhCccccccCcEEEEEeeHHHHHHHHHhCc
Confidence 48999999999999999999988999999999999999999999999985589998999999999999999999999999
Q ss_pred CCeEEEecCCchhhhhhhhhhhcCCCccccccccCCCCCe-EEEecCCCCccc-----cccccc-CCccccccC
Q psy12309 85 GGFVWACKNYDGDVQSDIVAQGYGSLGLMTSILMCPDGKT-IESEAAHGTVTR-----HYRFLG-INDINTNVS 151 (152)
Q Consensus 85 ~~fViv~~Nl~GDIlSDlaa~l~GglGl~psanig~~~~~-a~fEp~HGsApd-----iagk~~-anp~~~~~~ 151 (152)
++|||||+|||||||||++|+++||||++||+|+|+++ + +||||+|||||| |+||++ |||+|++.|
T Consensus 261 ~~fVivt~NlfGDIlSDlaa~l~GglG~apSanig~~~-~~a~FEp~HGSAPD~~~~~IaGk~~~ANP~A~IlS 333 (402)
T PRK08299 261 GGYVWACKNYDGDVQSDTVAQGFGSLGLMTSVLMTPDG-KTVEAEAAHGTVTRHYRQHQKGEETSTNPIASIFA 333 (402)
T ss_pred CCcEEEEeccccchhhhHHHhhcCCcccccceeeCCCC-CcEEEecCCCCCcccccccccCCCCccCHHHHHHH
Confidence 99999999999999999999999999999999999885 4 899999999999 999997 999999865
No 13
>PRK07006 isocitrate dehydrogenase; Reviewed
Probab=100.00 E-value=6.7e-59 Score=406.33 Aligned_cols=146 Identities=22% Similarity=0.259 Sum_probs=136.4
Q ss_pred cccchHHHHHHHHHHHHHHHhCCC-CEEEEeCCCcccccchHHHHHHHHHHHhhccccccc-------------CCeEEe
Q psy12309 4 DSRPESTFWIFGKPTYNVALQKKW-PLYLSTKNTILKKYDGHFKDIFQEVYEKNYKSQFEQ-------------AKIWYE 69 (152)
Q Consensus 4 ~~~t~~~~eRiar~AF~~A~~r~~-~Vt~v~KaNvl~~~dglf~~v~~eva~~~yp~~f~~-------------~~I~~~ 69 (152)
+++|++++|||+|+||+||++|++ +||++||+||||.|||+|++|+.|||+++||++|.+ .+|+++
T Consensus 192 ~v~Tr~~~eRi~r~AFe~A~~r~rkkVt~v~KaNVlk~tdglf~~~~~eva~~ey~~~~~~~~~~~~~~~~~~~p~v~~~ 271 (409)
T PRK07006 192 KPVSEEGTERLVRAAIEYAIDNDRKSVTLVHKGNIMKFTEGAFKDWGYQLAEEEFGDELIDGGPWDKIKNPETGKEIIVK 271 (409)
T ss_pred EEecHHHHHHHHHHHHHHHHhcCCCcEEEEECCCccccchHHHHHHHHHHHHHHhhhhhhccccccccccccCCCCceee
Confidence 468999999999999999999976 799999999999999999998889996689655554 389999
Q ss_pred eeeHHHHHHHHHhCCCCe-EEEecCCchhhhhhhhhhhcCCCccccccccCCCCCeEEEecCCCCcccccccccCCcccc
Q psy12309 70 HRLIDDMVAQALKGNGGF-VWACKNYDGDVQSDIVAQGYGSLGLMTSILMCPDGKTIESEAAHGTVTRHYRFLGINDINT 148 (152)
Q Consensus 70 ~~~iD~~~~~lv~~P~~f-Viv~~Nl~GDIlSDlaa~l~GglGl~psanig~~~~~a~fEp~HGsApdiagk~~anp~~~ 148 (152)
+++||++|||||++|++| ||||+|||||||||++|+++|||||+||+|+|++ ++||||+|||||||+||++|||+++
T Consensus 272 ~~~vDa~~~~lv~~P~~fDVIvt~NlfGDILSDlaa~l~GglGlapSanig~~--~a~FEpvHGSAPdiAGk~iANP~a~ 349 (409)
T PRK07006 272 DSIADAFLQQILLRPAEYDVIATMNLNGDYISDALAAQVGGIGIAPGANINDG--HAIFEATHGTAPKYAGLDKVNPGSV 349 (409)
T ss_pred hHHHHHHHHHHhhCcccCcEEEEcCcccchhhHHHHHhcCchhhcccceeCCC--ceEEECCCCcchhhCCCCCcChHHH
Confidence 999999999999999999 9999999999999999999999999999999965 7999999999999999999999999
Q ss_pred ccC
Q psy12309 149 NVS 151 (152)
Q Consensus 149 ~~~ 151 (152)
+.|
T Consensus 350 IlS 352 (409)
T PRK07006 350 ILS 352 (409)
T ss_pred HHH
Confidence 865
No 14
>TIGR00127 nadp_idh_euk isocitrate dehydrogenase, NADP-dependent, eukaryotic type. This model does not discriminate cytosolic, mitochondrial, and chloroplast proteins. However, the model starts very near the amino end of the cytosolic form; the finding of additional amino-terminal sequence may indicate a transit peptide.
Probab=100.00 E-value=2.2e-58 Score=402.17 Aligned_cols=149 Identities=70% Similarity=1.135 Sum_probs=140.3
Q ss_pred ccccchHHHHHHHHHHHHHHHhCCCCEEEEeCCCcccccchHHHHHHHHHHHhhcccccccCCeEEeeeeHHHHHHHHHh
Q psy12309 3 ADSRPESTFWIFGKPTYNVALQKKWPLYLSTKNTILKKYDGHFKDIFQEVYEKNYKSQFEQAKIWYEHRLIDDMVAQALK 82 (152)
Q Consensus 3 ~~~~t~~~~eRiar~AF~~A~~r~~~Vt~v~KaNvl~~~dglf~~v~~eva~~~yp~~f~~~~I~~~~~~iD~~~~~lv~ 82 (152)
..++|++++|||+|+||+||++|+++||++||+||||.+||+||++|+||++++||++|.+++|++++++||++|||||+
T Consensus 180 ~~~~T~~~~eRIar~AF~~A~~~~~~Vt~v~KaNVlk~~dglf~~~~~eva~~eYp~~~~~~~I~~~~~lVDa~~m~lv~ 259 (409)
T TIGR00127 180 AMYNTDESIEGFAHSSFQLALEKKWPLYLSTKNTILKKYDGRFKDIFQEVYEAQYKSKFEALGIWYEHRLIDDMVAQALK 259 (409)
T ss_pred EEEECHHHHHHHHHHHHHHHHHcCCCEEEEcCcchhhhhhHHHHHHHHHHHHHhCcccccCCCEEEEEeeHHHHHHHHhh
Confidence 34789999999999999999999889999999999999999999999999757999999999999999999999999999
Q ss_pred CCCCeEEEecCCchhhhhhhhhhhcCCCccccccccCCCCCeEEEecCCCCcccc-----ccc-ccCCccccccC
Q psy12309 83 GNGGFVWACKNYDGDVQSDIVAQGYGSLGLMTSILMCPDGKTIESEAAHGTVTRH-----YRF-LGINDINTNVS 151 (152)
Q Consensus 83 ~P~~fViv~~Nl~GDIlSDlaa~l~GglGl~psanig~~~~~a~fEp~HGsApdi-----agk-~~anp~~~~~~ 151 (152)
+|++|||||+|||||||||++|+++|||||+||+|+|+++...+|||+||||||| +|| ++|||+|++.|
T Consensus 260 ~P~~fViv~~NlfGDIlSDlaA~l~GslGl~pSanig~~~~~~~fEp~HGSApdi~~~~iaGk~~~ANP~A~IlS 334 (409)
T TIGR00127 260 SEGGFIWACKNYDGDVQSDIVAQGFGSLGLMTSVLICPDGKTFEAEAAHGTVTRHYRMYQKGQETSTNSIASIFA 334 (409)
T ss_pred CCCCcEEEecccchHHHHHHHHHhcCchhhhheeeeCCCCceEEeccccCCCcccchhhhCCCCCccChHHHHHH
Confidence 9999999999999999999999999999999999999886235789999999998 886 78999999865
No 15
>PRK09222 isocitrate dehydrogenase; Validated
Probab=100.00 E-value=4.2e-58 Score=406.96 Aligned_cols=139 Identities=26% Similarity=0.226 Sum_probs=134.3
Q ss_pred cccchHHHHHHHHHHHHHHHhCCC-CEEEEeCCCcccccchHHHHHHHHHHHhhcccccccCCeEEeeeeHHHHHHHHHh
Q psy12309 4 DSRPESTFWIFGKPTYNVALQKKW-PLYLSTKNTILKKYDGHFKDIFQEVYEKNYKSQFEQAKIWYEHRLIDDMVAQALK 82 (152)
Q Consensus 4 ~~~t~~~~eRiar~AF~~A~~r~~-~Vt~v~KaNvl~~~dglf~~v~~eva~~~yp~~f~~~~I~~~~~~iD~~~~~lv~ 82 (152)
.++||+++|||+|+||+||++|++ +||++||+|||+.|||||+++|+||+ ++|| +|+++|++||++||+|++
T Consensus 144 k~iTr~~~eRI~r~AFe~A~~r~rkkVt~v~KaNVmk~tdglf~~v~~eva-~eyP------dI~~~~~~VDa~a~~Lv~ 216 (482)
T PRK09222 144 KLISRPGSEKIIRYAFEYARANGRKKVTCLTKDNIMKLTDGLFHKVFDEIA-KEYP------DIEAEHYIVDIGAARLAT 216 (482)
T ss_pred eccCHHHHHHHHHHHHHHHHhcCCCeEEEEECCCcccccchHHHHHHHHHH-hhCC------CceEeeeeHHHHHHHHhc
Confidence 478999999999999999999976 69999999999999999999999998 7999 999999999999999999
Q ss_pred CCCCe-EEEecCCchhhhhhhhhhhcCCCccccccccCCCCCeEEEecCCCCcccccccccCCccccccC
Q psy12309 83 GNGGF-VWACKNYDGDVQSDIVAQGYGSLGLMTSILMCPDGKTIESEAAHGTVTRHYRFLGINDINTNVS 151 (152)
Q Consensus 83 ~P~~f-Viv~~Nl~GDIlSDlaa~l~GglGl~psanig~~~~~a~fEp~HGsApdiagk~~anp~~~~~~ 151 (152)
+|++| ||||+|||||||||++|+++||+||+||+|+|++ ++||||+||||||||||++|||++++.|
T Consensus 217 ~P~~FDVIVt~NLfGDILSDlaa~l~GslGlapSanig~~--~amFEpvHGSAPdIAGk~iANP~a~IlS 284 (482)
T PRK09222 217 NPENFDVIVTPNLYGDILSDIAAEISGSVGLAGSANIGEE--YAMFEAVHGSAPDIAGKNIANPSGLLNA 284 (482)
T ss_pred CcccceEEEEcccccchhhHHHHHhcCCcccccceecCCC--ceeeECCCCCchhhcCCCccCcHHHHHH
Confidence 99999 9999999999999999999999999999999987 6999999999999999999999998765
No 16
>PLN00123 isocitrate dehydrogenase (NAD+)
Probab=100.00 E-value=5e-58 Score=395.04 Aligned_cols=139 Identities=22% Similarity=0.211 Sum_probs=133.2
Q ss_pred cccchHHHHHHHHHHHHHHHhCCC-CEEEEeCCCcccccchHHHHHHHHHHHhhcccccccCCeEEeeeeHHHHHHHHHh
Q psy12309 4 DSRPESTFWIFGKPTYNVALQKKW-PLYLSTKNTILKKYDGHFKDIFQEVYEKNYKSQFEQAKIWYEHRLIDDMVAQALK 82 (152)
Q Consensus 4 ~~~t~~~~eRiar~AF~~A~~r~~-~Vt~v~KaNvl~~~dglf~~v~~eva~~~yp~~f~~~~I~~~~~~iD~~~~~lv~ 82 (152)
.++|++++|||+|+||+||++|++ +||++||+|||+.++|||+++|+||+ ++|| +|+++|++||++||+||+
T Consensus 163 ~v~Tr~~~eRIar~AF~~A~~r~rkkVt~v~KaNvl~~t~glf~~~~~eva-~eyP------dV~~~~~~VDa~~~~Lv~ 235 (360)
T PLN00123 163 KVITKFCSERIAKYAFEYAYLNNRKKVTAVHKANIMKLADGLFLESCREVA-KKYP------GIKYNEIIVDNCCMQLVS 235 (360)
T ss_pred EEecHHHHHHHHHHHHHHHHhcCCCcEEEEECCccccchhhHHHHHHHHHH-hhCC------CceEeeeeHHHHHHHHhh
Confidence 478999999999999999999865 69999999999999999999999998 7999 999999999999999999
Q ss_pred CCCCe-EEEecCCchhhhhhhhhhhcCCCccccccccCCCCCeEEEecCC--CCc--ccccccccCCccccccC
Q psy12309 83 GNGGF-VWACKNYDGDVQSDIVAQGYGSLGLMTSILMCPDGKTIESEAAH--GTV--TRHYRFLGINDINTNVS 151 (152)
Q Consensus 83 ~P~~f-Viv~~Nl~GDIlSDlaa~l~GglGl~psanig~~~~~a~fEp~H--GsA--pdiagk~~anp~~~~~~ 151 (152)
+|++| ||||+|||||||||++|+|+|||||+||+|+|++ ++||||+| ||| |||+||++|||++++.|
T Consensus 236 ~P~~fDViVt~NlfGDILSDlaa~l~GglGl~pSanig~~--~a~FEpvh~hGSA~~PdIAGk~iANP~a~IlS 307 (360)
T PLN00123 236 KPEQFDVMVTPNLYGNLVANTAAGIAGGTGVMPGGNVGAD--HAVFEQGASAGNVGNEKLVEQKKANPVALLLS 307 (360)
T ss_pred CcccCcEEEEcCcccchhhhHHHHhcCCcCccceEeeCCC--ceEEEecccCCCcCCccccCCCccChHHHHHH
Confidence 99999 9999999999999999999999999999999987 69999977 999 99999999999999865
No 17
>TIGR02924 ICDH_alpha isocitrate dehydrogenase. This family of mainly alphaproteobacterial enzymes is a member of the isocitrate/isopropylmalate dehydrogenase superfamily described by pfam00180. Every member of the seed of this model appears to have a TCA cycle lacking only a determined isocitrate dehydrogenase. The precise identity of the cofactor (NADH -- 1.1.1.41 vs. NADPH -- 1.1.1.42) is unclear.
Probab=100.00 E-value=4.4e-58 Score=405.88 Aligned_cols=139 Identities=25% Similarity=0.236 Sum_probs=134.2
Q ss_pred cccchHHHHHHHHHHHHHHHhCCC-CEEEEeCCCcccccchHHHHHHHHHHHhhcccccccCCeEEeeeeHHHHHHHHHh
Q psy12309 4 DSRPESTFWIFGKPTYNVALQKKW-PLYLSTKNTILKKYDGHFKDIFQEVYEKNYKSQFEQAKIWYEHRLIDDMVAQALK 82 (152)
Q Consensus 4 ~~~t~~~~eRiar~AF~~A~~r~~-~Vt~v~KaNvl~~~dglf~~v~~eva~~~yp~~f~~~~I~~~~~~iD~~~~~lv~ 82 (152)
.++||+++|||+|+||+||++|+| +||++||+|||+.|||||+++|+||+ ++|| +|+++|++||+++|+|++
T Consensus 140 kviTr~g~eRI~r~AFe~A~~r~rkkVT~v~KaNVmk~tdglf~e~~~eva-~eyP------dI~~e~~~VDa~a~~Lv~ 212 (473)
T TIGR02924 140 KLITRSGSEKICRYAFEYARKHNRKKVTCLTKDNIMKMTDGIFHKIFDKIA-AEYP------DIESEHYIVDIGMARLAT 212 (473)
T ss_pred EecCHHHHHHHHHHHHHHHHhcCCCeEEEEECCccccccchhHHHHHHHHH-hhCC------CcEEeeHHHHHHHHHHhh
Confidence 468999999999999999999976 69999999999999999999999998 7999 999999999999999999
Q ss_pred CCCCe-EEEecCCchhhhhhhhhhhcCCCccccccccCCCCCeEEEecCCCCcccccccccCCccccccC
Q psy12309 83 GNGGF-VWACKNYDGDVQSDIVAQGYGSLGLMTSILMCPDGKTIESEAAHGTVTRHYRFLGINDINTNVS 151 (152)
Q Consensus 83 ~P~~f-Viv~~Nl~GDIlSDlaa~l~GglGl~psanig~~~~~a~fEp~HGsApdiagk~~anp~~~~~~ 151 (152)
+|++| ||||+|||||||||++|+++||+||+||+|+|++ ++||||+||||||||||++|||++++.|
T Consensus 213 ~P~~FDVIVt~NLfGDILSDlaA~l~GslGlapSaNiG~~--~amFEpvHGSAPdIAGk~iANP~a~IlS 280 (473)
T TIGR02924 213 NPENFDVIVTPNLYGDILSDVAAEISGSVGLAGSANIGEE--YAMFEAVHGSAPDIAGQNIANPSGLLNA 280 (473)
T ss_pred CcccceEEEEccccchhhhHHHHHhcCCcCcccceecCCC--cceeecCCCchhhhCCCCccChHHHHHH
Confidence 99999 9999999999999999999999999999999988 6999999999999999999999998765
No 18
>TIGR00183 prok_nadp_idh isocitrate dehydrogenase, NADP-dependent, prokaryotic type. Prokaryotic NADP-dependent isocitrate dehydrogenases resemble their NAD-dependent counterparts and 3-isopropylmalate dehydrogenase (an NAD-dependent enzyme) more closely than they resemble eukaryotic NADP-dependent isocitrate dehydrogenases.
Probab=100.00 E-value=8.7e-58 Score=400.18 Aligned_cols=146 Identities=23% Similarity=0.256 Sum_probs=134.7
Q ss_pred cccchHHHHHHHHHHHHHHHhCCC-CEEEEeCCCcccccchHHHHHHHHHHHhhccccccc-------------CCeEEe
Q psy12309 4 DSRPESTFWIFGKPTYNVALQKKW-PLYLSTKNTILKKYDGHFKDIFQEVYEKNYKSQFEQ-------------AKIWYE 69 (152)
Q Consensus 4 ~~~t~~~~eRiar~AF~~A~~r~~-~Vt~v~KaNvl~~~dglf~~v~~eva~~~yp~~f~~-------------~~I~~~ 69 (152)
+++|++++|||+|+||+||++|++ +||++||+|||+.+||+|++++.||++++||.+|.. .+|+++
T Consensus 199 ~~~tr~~~~Riar~AFe~A~~r~rk~Vt~v~KaNvlk~tdglf~e~~~eva~~ey~~~~~~~~lw~~~~~p~~~p~I~~~ 278 (416)
T TIGR00183 199 KPISEEGTKRLVRAAIEYAIENDRKSVTLVHKGNIMKFTEGAFRDWGYELAKKEFGAECITWGLWDKYKNPNPGKEIVIK 278 (416)
T ss_pred EEecHHHHHHHHHHHHHHHHhcCCCeEEEEECCCccccchhhHHHHHHHHHHHHHhHhhhhccccccccCcccCCceeEe
Confidence 468899999999999999999965 799999999999999999999999995578433322 189999
Q ss_pred eeeHHHHHHHHHhCCCCe-EEEecCCchhhhhhhhhhhcCCCccccccccCCCCCeEEEecCCCCcccccccccCCcccc
Q psy12309 70 HRLIDDMVAQALKGNGGF-VWACKNYDGDVQSDIVAQGYGSLGLMTSILMCPDGKTIESEAAHGTVTRHYRFLGINDINT 148 (152)
Q Consensus 70 ~~~iD~~~~~lv~~P~~f-Viv~~Nl~GDIlSDlaa~l~GglGl~psanig~~~~~a~fEp~HGsApdiagk~~anp~~~ 148 (152)
|++||++|||||++|++| ||||+|||||||||++|+++|||||+||+|+|++ ++||||+|||||||+||++|||+++
T Consensus 279 ~~~vDa~~~~lv~~P~~fDVivt~NlfGDILSDlaa~l~GslGlapSanig~~--~alFEp~HGSAPdiAGk~iANP~a~ 356 (416)
T TIGR00183 279 DRIADAFLQQILTRPDEYDVIATMNLNGDYISDALAAQVGGIGIAPGANIGDE--IGIFEATHGTAPKYAGQDKVNPGSI 356 (416)
T ss_pred ehhHHHHHHHHhhCcccCcEEEEcCcccchhhHHHHHhcCchhhcceeeeCCC--ceEEECCCCCchhhcCCCCCCcHHH
Confidence 999999999999999999 9999999999999999999999999999999977 6999999999999999999999999
Q ss_pred ccC
Q psy12309 149 NVS 151 (152)
Q Consensus 149 ~~~ 151 (152)
+.|
T Consensus 357 IlS 359 (416)
T TIGR00183 357 ILS 359 (416)
T ss_pred HHH
Confidence 865
No 19
>PRK00772 3-isopropylmalate dehydrogenase; Provisional
Probab=100.00 E-value=2.4e-57 Score=391.07 Aligned_cols=139 Identities=22% Similarity=0.251 Sum_probs=134.1
Q ss_pred cccchHHHHHHHHHHHHHHHhCCCCEEEEeCCCcccccchHHHHHHHHHHHhhcccccccCCeEEeeeeHHHHHHHHHhC
Q psy12309 4 DSRPESTFWIFGKPTYNVALQKKWPLYLSTKNTILKKYDGHFKDIFQEVYEKNYKSQFEQAKIWYEHRLIDDMVAQALKG 83 (152)
Q Consensus 4 ~~~t~~~~eRiar~AF~~A~~r~~~Vt~v~KaNvl~~~dglf~~v~~eva~~~yp~~f~~~~I~~~~~~iD~~~~~lv~~ 83 (152)
.++|++++|||+|+||+||++|+++||++||+|||+ ++|+|+++|+||+ ++|| +|++++++||+++|+||++
T Consensus 161 ~~iTr~~~~Ri~r~Af~~A~~r~~~Vt~v~KaNvl~-~~glf~~~~~eva-~eyp------~i~~~~~~vDa~~~~lv~~ 232 (358)
T PRK00772 161 MVYTREEIERIARVAFELARKRRKKVTSVDKANVLE-SSRLWREVVTEVA-KEYP------DVELSHMYVDNAAMQLVRN 232 (358)
T ss_pred EEeeHHHHHHHHHHHHHHHHHcCCcEEEEECccccc-cchHHHHHHHHHH-hHCC------CceEEEEeHHHHHHHHhhC
Confidence 468999999999999999999988999999999999 8999999999998 7999 9999999999999999999
Q ss_pred CCCe-EEEecCCchhhhhhhhhhhcCCCccccccccCCCCCeEEEecCCCCcccccccccCCccccccC
Q psy12309 84 NGGF-VWACKNYDGDVQSDIVAQGYGSLGLMTSILMCPDGKTIESEAAHGTVTRHYRFLGINDINTNVS 151 (152)
Q Consensus 84 P~~f-Viv~~Nl~GDIlSDlaa~l~GglGl~psanig~~~~~a~fEp~HGsApdiagk~~anp~~~~~~ 151 (152)
|++| ||||+|||||||||++|+++||+||+||+|+|+++ ++||||+|||||||+||++|||++++.|
T Consensus 233 P~~fDViv~~NlfGDIlSDlaa~l~GglGl~psanig~~~-~a~FEp~HGSApdiAGk~~aNP~a~Ils 300 (358)
T PRK00772 233 PKQFDVIVTENLFGDILSDEAAMLTGSLGMLPSASLGESG-PGLYEPIHGSAPDIAGKGIANPIATILS 300 (358)
T ss_pred cccCeEEeecCcccccccHHHHHhcCCCCCCcceEeCCCC-ceeeecCCCchhhhcCCCCcCCHHHHHH
Confidence 9999 99999999999999999999999999999999886 6999999999999999999999998865
No 20
>TIGR00175 mito_nad_idh isocitrate dehydrogenase, NAD-dependent, mitochondrial type. The NADP-dependent IDH of Thermus aquaticus thermophilus strain HB8 resembles these NAD-dependent IDH, except for the residues involved in cofactor specificity, much more closely than it resembles other prokaryotic NADP-dependent IDH, including that of Thermus aquaticus strain YT1.
Probab=100.00 E-value=2.5e-57 Score=387.94 Aligned_cols=139 Identities=21% Similarity=0.177 Sum_probs=132.6
Q ss_pred cccchHHHHHHHHHHHHHHHhCCC-CEEEEeCCCcccccchHHHHHHHHHHHhhcccccccCCeEEeeeeHHHHHHHHHh
Q psy12309 4 DSRPESTFWIFGKPTYNVALQKKW-PLYLSTKNTILKKYDGHFKDIFQEVYEKNYKSQFEQAKIWYEHRLIDDMVAQALK 82 (152)
Q Consensus 4 ~~~t~~~~eRiar~AF~~A~~r~~-~Vt~v~KaNvl~~~dglf~~v~~eva~~~yp~~f~~~~I~~~~~~iD~~~~~lv~ 82 (152)
.++|++++|||+|+||+||++|++ +||++||+|||+.+||+|+++|+|++ ++|| +|+++|++||+++|+||+
T Consensus 140 ~~~Tr~~~eRi~r~Af~~A~~r~~k~Vt~v~KaNvl~~t~glf~~~~~eva-~~yp------~v~~~~~~vDa~~~~lv~ 212 (333)
T TIGR00175 140 KVITRDKSERIARYAFEYARKNGRKKVTAVHKANIMKLADGLFLNVCREVA-KEYP------DITFESMIVDNTCMQLVS 212 (333)
T ss_pred EecCHHHHHHHHHHHHHHHHhcCCCeEEEEECCccchhhHHHHHHHHHHHH-HHCC------CCeeeeeeHHHHHHHHhc
Confidence 468999999999999999999976 59999999999999999999999998 7899 999999999999999999
Q ss_pred CCCCe-EEEecCCchhhhhhhhhhhcCCCccccccccCCCCCeEEEecCC-CCcccccccccCCccccccC
Q psy12309 83 GNGGF-VWACKNYDGDVQSDIVAQGYGSLGLMTSILMCPDGKTIESEAAH-GTVTRHYRFLGINDINTNVS 151 (152)
Q Consensus 83 ~P~~f-Viv~~Nl~GDIlSDlaa~l~GglGl~psanig~~~~~a~fEp~H-GsApdiagk~~anp~~~~~~ 151 (152)
+|++| ||||+|||||||||++|+++|||||+||+|+|++ ++||||+| ||||||+||++|||++++.|
T Consensus 213 ~P~~fdViVt~NlfGDILSDlaa~l~GslGl~pSanig~~--~a~fEp~~hGSApdiaGk~iaNP~a~Ils 281 (333)
T TIGR00175 213 RPSQFDVMVMPNLYGNILSNLGAGLVGGPGLVPGANIGRD--YAVFEPGVRHTGPDIAGQNIANPTALILS 281 (333)
T ss_pred CcccccEEEEccccchhhhHHHHHhcCCcccCceeEEcCC--CceEeccCCCCchhhCCCCccChHHHHHH
Confidence 99999 9999999999999999999999999999999987 58999955 99999999999999999865
No 21
>PLN00096 isocitrate dehydrogenase (NADP+); Provisional
Probab=100.00 E-value=2.9e-57 Score=392.41 Aligned_cols=149 Identities=28% Similarity=0.327 Sum_probs=139.0
Q ss_pred CccccchHHHHHHHHHHHHHHHhCCCCEEEEeCCCcccccchHHHHHHHHHHHhhccccccc-----CCeEEeeeeHHHH
Q psy12309 2 FADSRPESTFWIFGKPTYNVALQKKWPLYLSTKNTILKKYDGHFKDIFQEVYEKNYKSQFEQ-----AKIWYEHRLIDDM 76 (152)
Q Consensus 2 ~~~~~t~~~~eRiar~AF~~A~~r~~~Vt~v~KaNvl~~~dglf~~v~~eva~~~yp~~f~~-----~~I~~~~~~iD~~ 76 (152)
+|||||.++++||||+||+||++|+++||++||+||||.++|+|+ +|+||++++|+++|++ .+|+++|+|||+|
T Consensus 169 ~~~~N~~~si~RiAr~AF~~A~~r~~~Vt~v~KaNILK~tdg~f~-if~eVa~~eyk~~f~~~~~~~p~V~~e~~lIDa~ 247 (393)
T PLN00096 169 VTYHNPLDNVHHLARIFFGRCLDAGIVPYVVTKKTVFKWQEPFWE-IMKKVFDEEFKSKFVDKGVMKSGDELVHLLSDAA 247 (393)
T ss_pred EEeccCHHHHHHHHHHHHHHHHHhCCcEEEEeCccccccchHHHH-HHHHHHHHHHhhhhhhcccCCCceEEEeeeHHHH
Confidence 689999999999999999999999999999999999999999998 9999987899988887 4568999999999
Q ss_pred HHHHHhCCCCe-EEEecCCchhhhhhhhhhhcCCCccccccccCCC--CC-eEEEecCCCCccccc-----cc-ccCCcc
Q psy12309 77 VAQALKGNGGF-VWACKNYDGDVQSDIVAQGYGSLGLMTSILMCPD--GK-TIESEAAHGTVTRHY-----RF-LGINDI 146 (152)
Q Consensus 77 ~~~lv~~P~~f-Viv~~Nl~GDIlSDlaa~l~GglGl~psanig~~--~~-~a~fEp~HGsApdia-----gk-~~anp~ 146 (152)
|||||++|++| ||||+|||||||||++|+++|||||+||+|+|++ +. +++|||+|||||||+ || +++||+
T Consensus 248 ~~qlVk~P~~fdViv~~NlfGDIlSDlaA~l~GsLGl~pSanig~d~dg~~~a~fEp~HGSApdiag~~~~Gk~~~ANPi 327 (393)
T PLN00096 248 TMKLVVWTDGGFGMAAHNYDGDVLTDELAQVHKSPGFITSNLVGVDENGTLIKEFEASHGTVTDMDEARLRGEETSLNPL 327 (393)
T ss_pred HHHHHhCcccCCEEEECcccchHHHHHHHHhcCCcccccccccCCccCCccceEEEcCCCChHHhhhhhhcCCCCccChH
Confidence 99999999999 9999999999999999999999999999999954 62 289999999999999 89 499999
Q ss_pred ccccC
Q psy12309 147 NTNVS 151 (152)
Q Consensus 147 ~~~~~ 151 (152)
|++.|
T Consensus 328 A~IlA 332 (393)
T PLN00096 328 GMVEG 332 (393)
T ss_pred HHHHH
Confidence 99863
No 22
>PLN00103 isocitrate dehydrogenase (NADP+); Provisional
Probab=100.00 E-value=9.9e-57 Score=392.14 Aligned_cols=147 Identities=69% Similarity=1.113 Sum_probs=136.8
Q ss_pred ccchHHHHHHHHHHHHHHHhCCCCEEEEeCCCcccccchHHHHHHHHHHHhhcccccccCCeEEeeeeHHHHHHHHHhCC
Q psy12309 5 SRPESTFWIFGKPTYNVALQKKWPLYLSTKNTILKKYDGHFKDIFQEVYEKNYKSQFEQAKIWYEHRLIDDMVAQALKGN 84 (152)
Q Consensus 5 ~~t~~~~eRiar~AF~~A~~r~~~Vt~v~KaNvl~~~dglf~~v~~eva~~~yp~~f~~~~I~~~~~~iD~~~~~lv~~P 84 (152)
++|++++|||+|+||+||++|+++||++||+|||+.+||+||++|+||++++|..+|++++|++++++||++||+||++|
T Consensus 185 ~~T~~~~~Riar~AFe~A~~r~~~vt~v~KaNVlk~~dglf~~~~~eva~~~~~~eyp~~~I~~~~~lVDa~a~~lv~~P 264 (410)
T PLN00103 185 YNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEAQWKSKFEAAGIWYEHRLIDDMVAYALKSE 264 (410)
T ss_pred EcCHHHHHHHHHHHHHHHHhcCCcEEEECCCCCchhhHHHHHHHHHHHHHhhhhhhCCCCceEEEEeEHHHHHHHHhcCC
Confidence 46999999999999999999988999999999999999999999999997655556666689999999999999999999
Q ss_pred CCeEEEecCCchhhhhhhhhhhcCCCccccccccCCCCCeEEEecCCCCccc------ccccccCCccccccC
Q psy12309 85 GGFVWACKNYDGDVQSDIVAQGYGSLGLMTSILMCPDGKTIESEAAHGTVTR------HYRFLGINDINTNVS 151 (152)
Q Consensus 85 ~~fViv~~Nl~GDIlSDlaa~l~GglGl~psanig~~~~~a~fEp~HGsApd------iagk~~anp~~~~~~ 151 (152)
++|||||+|||||||||++|+++|||||+||+|+|+++.++||||+|||||| |+||++|||+|++.|
T Consensus 265 ~~fViv~~NLfGDIlSDlaA~l~GslGlapSanig~~~~~~~FEp~HGSApd~~~~~diaGk~iANP~A~IlS 337 (410)
T PLN00103 265 GGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFA 337 (410)
T ss_pred CCCEEEEcccchHHHHHHHHHhcCchhhhhccccCCCCCcEEEeCCCCcCcccchhhhhcCCCccChHHHHHH
Confidence 9999999999999999999999999999999999987523799999999998 899999999999865
No 23
>PLN03065 isocitrate dehydrogenase (NADP+); Provisional
Probab=100.00 E-value=2.2e-56 Score=395.05 Aligned_cols=149 Identities=64% Similarity=1.054 Sum_probs=141.7
Q ss_pred ccccchHHHHHHHHHHHHHHHhCCCCEEEEeCCCcccccchHHHHHHHHHHHhhcccccccCCeEEeeeeHHHHHHHHHh
Q psy12309 3 ADSRPESTFWIFGKPTYNVALQKKWPLYLSTKNTILKKYDGHFKDIFQEVYEKNYKSQFEQAKIWYEHRLIDDMVAQALK 82 (152)
Q Consensus 3 ~~~~t~~~~eRiar~AF~~A~~r~~~Vt~v~KaNvl~~~dglf~~v~~eva~~~yp~~f~~~~I~~~~~~iD~~~~~lv~ 82 (152)
+++||++++|||+|+||+||++|+++||++||+||||.+||+|+++|+||++++|..+|++++|+++|++||+||||||+
T Consensus 250 ~~~nT~~sieriAr~AF~yA~~rk~~Vt~v~KaNILK~~DGlF~dif~eVa~~eyk~~yp~~~I~~e~~lIDa~~~~lvk 329 (483)
T PLN03065 250 AMYNVDESIRAFAESSMAMALQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEEQWKQKFEEHSIWYEHRLIDDMVAYAVK 329 (483)
T ss_pred EEEECHHHHHHHHHHHHHHHHHcCCCEEEEeCCCcccchHHHHHHHHHHHHHHhhhhcCCCCCceEEeeeHHHHHHHHHh
Confidence 56899999999999999999999889999999999999999999999999988888889888999999999999999999
Q ss_pred CCCCeEEEecCCchhhhhhhhhhhcCCCccccccccCCCCCeEEEecCCCCccc-----cccccc-CCccccccC
Q psy12309 83 GNGGFVWACKNYDGDVQSDIVAQGYGSLGLMTSILMCPDGKTIESEAAHGTVTR-----HYRFLG-INDINTNVS 151 (152)
Q Consensus 83 ~P~~fViv~~Nl~GDIlSDlaa~l~GglGl~psanig~~~~~a~fEp~HGsApd-----iagk~~-anp~~~~~~ 151 (152)
+|++|||||+|||||||||++|+++|||||+||+|+|+++.+++|||+|||||| ++||++ +||+|++.|
T Consensus 330 ~P~~FViv~~NlfGDIlSDl~A~l~GsLGl~pSanig~dg~~~~fEa~HGSapd~~~~~iaGk~t~ANPiA~IlA 404 (483)
T PLN03065 330 SEGGYVWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLHQKGQETSTNSIASIFA 404 (483)
T ss_pred CCCCcEEEeeccchhhhhHHHHHhcCchhhcccceeCCCCceEEEecCcCcCccccchhccCCCCCcChHHHHHH
Confidence 999999999999999999999999999999999999998633799999999999 889995 999998764
No 24
>PF00180 Iso_dh: Isocitrate/isopropylmalate dehydrogenase; InterPro: IPR024084 Isocitrate dehydrogenase (IDH) [, ] is an important enzyme of carbohydrate metabolism which catalyses the oxidative decarboxylation of isocitrate into alpha-ketoglutarate. IDH is either dependent on NAD+ (1.1.1.41 from EC) or on NADP+ (1.1.1.42 from EC). In eukaryotes there are at least three isozymes of IDH: two are located in the mitochondrial matrix (one NAD+-dependent, the other NADP+-dependent), while the third one (also NADP+-dependent) is cytoplasmic. In Escherichia coli the activity of a NADP+-dependent form of the enzyme is controlled by the phosphorylation of a serine residue; the phosphorylated form of IDH is completely inactivated. 3-isopropylmalate dehydrogenase (1.1.1.85 from EC) (IMDH) [, ] catalyses the third step in the biosynthesis of leucine in bacteria and fungi, the oxidative decarboxylation of 3-isopropylmalate into 2-oxo-4-methylvalerate. Tartrate dehydrogenase (1.1.1.93 from EC) [] catalyses the reduction of tartrate to oxaloglycolate. These enzymes are evolutionary related. To this family also belongs the enzyme tartrate dehydrogenase, which shows strong homology to prokaryotic isopropylmalate dehydrogenases and, to a lesser extent, isocitrate dehydrogenase []. This entry represents a structural domain found in all types of isocitrate dehydrogenase, and in isopropylmalate dehydrogenase and tartrate dehydrogenase. The crystal structure of Escherichia coli isopropylmalate dehydrogenase has been described []. ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 1WAL_A 1CNZ_B 2D4V_C 1CM7_A 4AOY_D 3FMX_X 3FLK_C 1A05_A 1X0L_B 4F7I_D ....
Probab=100.00 E-value=1.2e-56 Score=385.14 Aligned_cols=140 Identities=29% Similarity=0.332 Sum_probs=132.2
Q ss_pred cccchHHHHHHHHHHHHHHHhCC-CCEEEEeCCCcccccchHHHHHHHHHHHhhcccccccCCeEEeeeeHHHHHHHHHh
Q psy12309 4 DSRPESTFWIFGKPTYNVALQKK-WPLYLSTKNTILKKYDGHFKDIFQEVYEKNYKSQFEQAKIWYEHRLIDDMVAQALK 82 (152)
Q Consensus 4 ~~~t~~~~eRiar~AF~~A~~r~-~~Vt~v~KaNvl~~~dglf~~v~~eva~~~yp~~f~~~~I~~~~~~iD~~~~~lv~ 82 (152)
+++|++++|||+|+||+||++|+ ++||++||+|||+.++ +|+++|+|+++++|| +|++++++||+++|+||+
T Consensus 155 ~~~t~~~~eRi~r~AF~~A~~r~~k~Vt~v~KaNvl~~~~-lf~~~~~eva~~~yp------~I~~~~~~vD~~~~~Lv~ 227 (348)
T PF00180_consen 155 KVITREGIERIARFAFEYARKRGRKKVTVVHKANVLKSTD-LFREVFQEVAKQEYP------DIEVEHMLVDAAAMQLVK 227 (348)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHTTTSEEEEEESTTTSTTHH-HHHHHHHHHHHHTHT------TSEEEEEEHHHHHHHHHH
T ss_pred eccccchhhHHHHHHHHHHHHhCCceEEEEeccchhHHHH-HHHHHHHHHHHhhcc------eeEeeeeechhhhheeec
Confidence 47899999999999999999995 4899999999999998 999999999954999 999999999999999999
Q ss_pred CCCCe-EEEecCCchhhhhhhhhhhcCCCccccccccCCCCCeEEEecCCCCcccccccccCCccccccC
Q psy12309 83 GNGGF-VWACKNYDGDVQSDIVAQGYGSLGLMTSILMCPDGKTIESEAAHGTVTRHYRFLGINDINTNVS 151 (152)
Q Consensus 83 ~P~~f-Viv~~Nl~GDIlSDlaa~l~GglGl~psanig~~~~~a~fEp~HGsApdiagk~~anp~~~~~~ 151 (152)
+|++| ||||+|||||||||++++++||+||+||+|+|+++ ++||||+|||||||+||++|||++++.|
T Consensus 228 ~P~~fdViv~~Nl~GDIlSDl~a~l~G~lGl~psanig~~~-~a~fEp~HGSApdiaGk~~aNP~a~Ils 296 (348)
T PF00180_consen 228 NPEQFDVIVTPNLFGDILSDLAAGLVGGLGLAPSANIGPDG-HAMFEPVHGSAPDIAGKGIANPIAMILS 296 (348)
T ss_dssp SGGGESEEEEEHHHHHHHHHHHHHHHTSGGGEEEEEEETSS-EEEEEESSTTTGGGTTSSHS-THHHHHH
T ss_pred CCcceeEEeecchhHHHHHHHhhhcCCChhhhhhhccCccc-cccccccccccccccCCcccCcHHHHHH
Confidence 99999 99999999999999999999999999999999654 8999999999999999999999998765
No 25
>KOG0785|consensus
Probab=100.00 E-value=1.4e-56 Score=377.87 Aligned_cols=138 Identities=26% Similarity=0.296 Sum_probs=133.0
Q ss_pred ccchHHHHHHHHHHHHHHHhCCC-CEEEEeCCCcccccchHHHHHHHHHHHhhcccccccCCeEEeeeeHHHHHHHHHhC
Q psy12309 5 SRPESTFWIFGKPTYNVALQKKW-PLYLSTKNTILKKYDGHFKDIFQEVYEKNYKSQFEQAKIWYEHRLIDDMVAQALKG 83 (152)
Q Consensus 5 ~~t~~~~eRiar~AF~~A~~r~~-~Vt~v~KaNvl~~~dglf~~v~~eva~~~yp~~f~~~~I~~~~~~iD~~~~~lv~~ 83 (152)
.+|+.+++||++|||+||++++| +||++||+|||+.+||||+++|+|++ ++|| +|+++++++|++|++|+++
T Consensus 174 ~IT~~AS~Ria~~AF~yAr~~~R~~vtvvHKaNImr~tDGLFle~cre~a-~~y~------dI~~eE~~lDt~~l~lv~~ 246 (365)
T KOG0785|consen 174 LITEAASRRIAEYAFEYARQNGRKRVTVVHKANIMRMTDGLFLECCREVA-KKYP------DIKFEEQYLDTCCLKLVRN 246 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCceEEEehhhhhhhcchHHHHHHHHHh-hhCC------ccchhHHHHHHHHHHHhcC
Confidence 57999999999999999999988 79999999999999999999999997 8999 9999999999999999999
Q ss_pred CCCe-EEEecCCchhhhhhhhhhhcCCCccccccccCCCCCeEEEecCCCCcccccccccCCccccccC
Q psy12309 84 NGGF-VWACKNYDGDVQSDIVAQGYGSLGLMTSILMCPDGKTIESEAAHGTVTRHYRFLGINDINTNVS 151 (152)
Q Consensus 84 P~~f-Viv~~Nl~GDIlSDlaa~l~GglGl~psanig~~~~~a~fEp~HGsApdiagk~~anp~~~~~~ 151 (152)
|..| |+||||||||||||+||+|+||||++||+||| ++ .++||++||||||||||++|||+|+..|
T Consensus 247 P~~~DVlV~PNLYGDIlSD~~agLvGgLGltPS~NiG-~g-~~~~e~vHGsAPDIAGkdlANPtAlllS 313 (365)
T KOG0785|consen 247 PSCFDVLVMPNLYGDILSDLCAGLVGGLGLTPSANIG-DG-IVIFEAVHGSAPDIAGKDLANPTALLLS 313 (365)
T ss_pred chhceEEeccchhHHHHHHHHHHhccCcccCCCcccC-CC-eeeeecccCCCcccccCCcCCcHHHHHH
Confidence 9999 99999999999999999999999999999999 55 7999999999999999999999998765
No 26
>PRK07362 isocitrate dehydrogenase; Validated
Probab=100.00 E-value=6.7e-56 Score=390.08 Aligned_cols=146 Identities=23% Similarity=0.262 Sum_probs=132.5
Q ss_pred cccchHHHHHHHHHHHHHHHhCC---CCEEEEeCCCcccccchHHHHHHHHHHHhhccc---------------cccc--
Q psy12309 4 DSRPESTFWIFGKPTYNVALQKK---WPLYLSTKNTILKKYDGHFKDIFQEVYEKNYKS---------------QFEQ-- 63 (152)
Q Consensus 4 ~~~t~~~~eRiar~AF~~A~~r~---~~Vt~v~KaNvl~~~dglf~~v~~eva~~~yp~---------------~f~~-- 63 (152)
+.+|++++|||+|+||+||++|+ ++||++||+|||+.++|+||+|+.|+|+++|+. +|++
T Consensus 206 k~iTr~g~eRI~r~AFe~A~~r~~~rkkVT~VhKaNVlk~t~glf~~~~~evA~~~~~~~~v~~~~~~~~~~~~~~p~v~ 285 (474)
T PRK07362 206 KPVSKTGSQRHIRRAIEHALRLPGDKRHVTLVHKGNIMKYTEGAFRDWGYELATTEFRDECVTERESWILSNKEKNPNIS 285 (474)
T ss_pred eeccHHHHHHHHHHHHHHHHhcCCCCCeEEEEECCcccccchhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccccCcccc
Confidence 57899999999999999999983 479999999999999999999888998535521 1221
Q ss_pred --------------------------------------------CCeEEeeeeHHHHHHHHHhCCCCe-EEEecCCchhh
Q psy12309 64 --------------------------------------------AKIWYEHRLIDDMVAQALKGNGGF-VWACKNYDGDV 98 (152)
Q Consensus 64 --------------------------------------------~~I~~~~~~iD~~~~~lv~~P~~f-Viv~~Nl~GDI 98 (152)
.+|.+++++||++|||||++|++| ||||+||||||
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~vDa~a~~lv~~P~~FDVIVt~NLfGDI 365 (474)
T PRK07362 286 IEDNARMIEPGYDSLTPEKKAAICAEVKEVLDSIWSSHGNGKWKEKVLVDDRIADSIFQQIQTRPQEYSILATLNLNGDY 365 (474)
T ss_pred ccccccccccccccccccccccccccccccccchhhccccccCCCcceeehHHHHHHHHHHHhChhhCCEEEEccccchh
Confidence 258899999999999999999999 99999999999
Q ss_pred hhhhhhhhcCCCccccccccCCCCCeEEEecCCCCcccccccccCCccccccC
Q psy12309 99 QSDIVAQGYGSLGLMTSILMCPDGKTIESEAAHGTVTRHYRFLGINDINTNVS 151 (152)
Q Consensus 99 lSDlaa~l~GglGl~psanig~~~~~a~fEp~HGsApdiagk~~anp~~~~~~ 151 (152)
|||++|+|+|||||+||+|+|++ ++||||+||||||||||++|||++++.|
T Consensus 366 LSDlaA~lvGglGlaPSANiG~~--~a~FEpvHGSAPdIAGk~iANP~A~ILS 416 (474)
T PRK07362 366 ISDAAAAIVGGLGMAPGANIGDN--AAIFEATHGTAPKHAGLDRINPGSVILS 416 (474)
T ss_pred hhHHHHHhcCCccccceeeeCCC--ceeeecCCCCchhhcCCCCcCcHHHHHH
Confidence 99999999999999999999987 6999999999999999999999999875
No 27
>TIGR02088 LEU3_arch isopropylmalate/isohomocitrate dehydrogenases. This family is closely related to both the LeuB genes found in TIGR00169 and the mitochondrial eukaryotic isocitrate dehydratases found in TIGR00175. All of these are included within the broader subfamily model, pfam00180.
Probab=100.00 E-value=1.3e-55 Score=375.85 Aligned_cols=138 Identities=23% Similarity=0.251 Sum_probs=132.5
Q ss_pred cccchHHHHHHHHHHHHHHHhCCCCEEEEeCCCcccccchHHHHHHHHHHHhhcccccccCCeEEeeeeHHHHHHHHHhC
Q psy12309 4 DSRPESTFWIFGKPTYNVALQKKWPLYLSTKNTILKKYDGHFKDIFQEVYEKNYKSQFEQAKIWYEHRLIDDMVAQALKG 83 (152)
Q Consensus 4 ~~~t~~~~eRiar~AF~~A~~r~~~Vt~v~KaNvl~~~dglf~~v~~eva~~~yp~~f~~~~I~~~~~~iD~~~~~lv~~ 83 (152)
.++|++++|||+|+||+||++|+++||++||+|||+.++|||+++|+|++ ++|| |+++|++||++||+||++
T Consensus 136 ~~~tr~~~eRi~r~AF~~A~~r~~~Vt~v~KaNvl~~t~glf~~~~~eva-~~yp-------v~~~~~~vDa~~~~lv~~ 207 (322)
T TIGR02088 136 RVITREGSERIARFAFNLAKERNRKVTCVHKANVLKGTDGLFREVCREIA-KRYG-------VEYRDMYVDSAAMNLVKD 207 (322)
T ss_pred EEecHHHHHHHHHHHHHHHHHcCCcEEEEeCCcchhhhHHHHHHHHHHHH-HhCC-------eeeeeeeHHHHHHHHhhC
Confidence 46899999999999999999998899999999999999999999999998 7887 999999999999999999
Q ss_pred CCCe-EEEecCCchhhhhhhhhhhcCCCccccccccCCCCCeEEEecCCCCcccccccccCCccccccC
Q psy12309 84 NGGF-VWACKNYDGDVQSDIVAQGYGSLGLMTSILMCPDGKTIESEAAHGTVTRHYRFLGINDINTNVS 151 (152)
Q Consensus 84 P~~f-Viv~~Nl~GDIlSDlaa~l~GglGl~psanig~~~~~a~fEp~HGsApdiagk~~anp~~~~~~ 151 (152)
|++| ||||+|||||||||++|+++||+||+||+|+|++ ++||||.|||||||+||+++||+++..|
T Consensus 208 P~~fdViv~~NlfGDIlSDlaa~l~GglGl~pSanig~~--~a~fep~hGsa~diaG~~~aNp~a~i~A 274 (322)
T TIGR02088 208 PWRFDVIVTTNMFGDILSDLASALAGSLGLAPSANIGDR--KALFEPVHGSAPDIAGKGIANPTAAILS 274 (322)
T ss_pred CcCceEEEecCcccchhhHHHHhhcCCCCCCceeEEcCC--ceEEecCCCChhHhCCCCCCChHHHHHH
Confidence 9999 9999999999999999999999999999999987 6999999999999999999999998643
No 28
>COG0538 Icd Isocitrate dehydrogenases [Energy production and conversion]
Probab=100.00 E-value=2e-45 Score=316.59 Aligned_cols=144 Identities=33% Similarity=0.379 Sum_probs=134.8
Q ss_pred cchHHHHHHHHHHHHHHHhCCC-CEEEEeCCCcccccchHHHHHHHHHHHhh--------cccccccCC----eEEeeee
Q psy12309 6 RPESTFWIFGKPTYNVALQKKW-PLYLSTKNTILKKYDGHFKDIFQEVYEKN--------YKSQFEQAK----IWYEHRL 72 (152)
Q Consensus 6 ~t~~~~eRiar~AF~~A~~r~~-~Vt~v~KaNvl~~~dglf~~v~~eva~~~--------yp~~f~~~~----I~~~~~~ 72 (152)
++.++++|++|.||+||++++| +||++||.||||.|+|.|++|+.|||+++ |..+|+.++ |.+++++
T Consensus 191 ~s~~~s~Rlvr~ai~yAi~~~r~~VtlvhKgnImK~teGaFkdw~yeva~~~ef~~~~~~~~~~~~~~~~~gkI~~~dri 270 (407)
T COG0538 191 ISKEGSIRLVRAAIEYAIENKRKSVTLVHKGNIMKFTEGAFKDWGYEVAEEEEFGDEVVTGKEKFELKGPKGKIVYKDRI 270 (407)
T ss_pred cCchhhHHHHHHHHHHHHHcCCceEEEEecCeeeecccchHHHHHHHHHhhhcccccccccchhhhccCcCceEEEehhh
Confidence 4578899999999999999996 79999999999999999999999999764 566777778 9999999
Q ss_pred HHHHHHHHHhCCCCe-EEEecCCchhhhhhhhhhhcCCCccccccccCCCCCeEEEecCCCCcccccccccCCccccccC
Q psy12309 73 IDDMVAQALKGNGGF-VWACKNYDGDVQSDIVAQGYGSLGLMTSILMCPDGKTIESEAAHGTVTRHYRFLGINDINTNVS 151 (152)
Q Consensus 73 iD~~~~~lv~~P~~f-Viv~~Nl~GDIlSDlaa~l~GglGl~psanig~~~~~a~fEp~HGsApdiagk~~anp~~~~~~ 151 (152)
+|+|.+|++++|+.| ||+|+||.||++||.+|+++|||||+||+|||+. +++|||+|||||+||||+.+||++.++|
T Consensus 271 aD~mlqQil~r~~eydViA~~NlnGDy~SDa~Aa~vGglGi~pgani~~~--~~~fEA~HGTapk~aG~~~~Np~a~Ils 348 (407)
T COG0538 271 ADDMLQQILLRPGEYDVIATKNLNGDYISDALAAQVGGLGLAPGANIGDG--TAEFEATHGTAPKYAGKDSTNPIASILS 348 (407)
T ss_pred HHHHHHHHhcCCCCceEEEeccCCccHHHHHHHHhcCCccccccceecCc--eEEEEeccCccccccCcCCCCcHHHHHH
Confidence 999999999999999 9999999999999999999999999999999943 8999999999999999999999998765
No 29
>KOG0784|consensus
Probab=100.00 E-value=3.7e-45 Score=311.18 Aligned_cols=138 Identities=23% Similarity=0.190 Sum_probs=130.0
Q ss_pred cccchHHHHHHHHHHHHHHHhCCC-CEEEEeCCCcccccchHHHHHHHHHHHhhcccccccCCeEEeeeeHHHHHHHHHh
Q psy12309 4 DSRPESTFWIFGKPTYNVALQKKW-PLYLSTKNTILKKYDGHFKDIFQEVYEKNYKSQFEQAKIWYEHRLIDDMVAQALK 82 (152)
Q Consensus 4 ~~~t~~~~eRiar~AF~~A~~r~~-~Vt~v~KaNvl~~~dglf~~v~~eva~~~yp~~f~~~~I~~~~~~iD~~~~~lv~ 82 (152)
.+.|++.+|||+||||+||.+.+| |||+|||+|+||.+||||+++|+||+ +.|| +|+++.++||++|||||+
T Consensus 179 KVvT~~kseRIaryAF~yA~k~gRKkVTaVHKAnimKL~DGlFle~~~eva-~~Yp------~I~~e~miVDN~~MQlvs 251 (375)
T KOG0784|consen 179 KVVTRFKSERIARYAFEYAKKNGRKKVTAVHKANIMKLGDGLFLESCQEVA-KKYP------DITFEEMIVDNACMQLVS 251 (375)
T ss_pred eeehhhhhHHHHHHHHHHHHHhCCceEEEEeccCceecchhhHHHHHHHHH-hcCC------CccHHHhhHHHhHHHhhc
Confidence 368999999999999999999988 79999999999999999999999998 5699 999999999999999999
Q ss_pred CCCCe-EEEecCCchhhhhhhhhhhcCCCccccccccCCCCCeEEEec--CCCCcccccccccCCccccccC
Q psy12309 83 GNGGF-VWACKNYDGDVQSDIVAQGYGSLGLMTSILMCPDGKTIESEA--AHGTVTRHYRFLGINDINTNVS 151 (152)
Q Consensus 83 ~P~~f-Viv~~Nl~GDIlSDlaa~l~GglGl~psanig~~~~~a~fEp--~HGsApdiagk~~anp~~~~~~ 151 (152)
+|++| |+|+|||||.|+|.+|++|+||.|+.|++|+|++ |++||| .|+. .+++||++|||+|+..|
T Consensus 252 ~P~qFDvmv~pnlYgniisNiaaGlvGG~Glv~G~n~G~~--yAVFE~g~r~~~-~~~~g~~~aNPtA~lls 320 (375)
T KOG0784|consen 252 RPQQFDVMVMPNLYGNIISNIAAGLVGGAGLVSGANYGDD--YAVFEPGARHTG-TSIAGKNIANPTAMLLS 320 (375)
T ss_pred CchheeeEechHHHHHHHHHHHHHhcCCCCcccccccccc--eEEecccccccc-hhhhcccccCcHHHHHH
Confidence 99999 9999999999999999999999999999999999 899999 4554 56999999999998654
No 30
>KOG0786|consensus
Probab=100.00 E-value=1.6e-44 Score=299.89 Aligned_cols=140 Identities=21% Similarity=0.230 Sum_probs=131.8
Q ss_pred cccchHHHHHHHHHHHHHHHhCCC--CEEEEeCCCcccccchHHHHHHHHHHHhhcccccccCCeEEeeeeHHHHHHHHH
Q psy12309 4 DSRPESTFWIFGKPTYNVALQKKW--PLYLSTKNTILKKYDGHFKDIFQEVYEKNYKSQFEQAKIWYEHRLIDDMVAQAL 81 (152)
Q Consensus 4 ~~~t~~~~eRiar~AF~~A~~r~~--~Vt~v~KaNvl~~~dglf~~v~~eva~~~yp~~f~~~~I~~~~~~iD~~~~~lv 81 (152)
..++.+++.||+|.||+.|++|+. +++++||+||+. ++.|||+.+.+..++||| ++++.|++||+++|+||
T Consensus 158 e~Ya~~Ev~RIaR~Aa~~A~~~~pp~pl~slDKANVLa-aSrLWRKtV~~~~k~EyP------~l~l~hqliDsAAM~Lv 230 (363)
T KOG0786|consen 158 EIYAAHEVDRIARVAAETARKRRPPGPLCSLDKANVLA-ASRLWRKTVTKALKSEYP------DLELSHQLIDSAAMQLV 230 (363)
T ss_pred ccccHHHHHHHHHHHHHHHHhhCCCCCccccchhhHHH-HHHHHHHHHHHHHHhhCC------CcchhhhhhhHHHHHHh
Confidence 457889999999999999999884 799999999998 679999999988789999 99999999999999999
Q ss_pred hCCCCe--EEEecCCchhhhhhhhhhhcCCCccccccccC-----CCCCeEEEecCCCCcccccccccCCccccccC
Q psy12309 82 KGNGGF--VWACKNYDGDVQSDIVAQGYGSLGLMTSILMC-----PDGKTIESEAAHGTVTRHYRFLGINDINTNVS 151 (152)
Q Consensus 82 ~~P~~f--Viv~~Nl~GDIlSDlaa~l~GglGl~psanig-----~~~~~a~fEp~HGsApdiagk~~anp~~~~~~ 151 (152)
++|.+| +||+.|+||||+||.++.+.||+||.||++++ ..+ +.+|||+|||||||+||+++||++|++|
T Consensus 231 k~P~~lng~ivT~NiFGDIiSDEASvIpGSlGlLPSASLs~v~~~es~-~gL~EPiHGSAPDiagk~kvNPlaTILS 306 (363)
T KOG0786|consen 231 KDPKQLNGTIVTNNIFGDIISDEASVIPGSLGLLPSASLSGVVSEESG-PGLFEPIHGSAPDIAGKDKVNPLATILS 306 (363)
T ss_pred cCchhcCceEEeccchhhhhccccccccCccccccchhhcCCcccccC-CcccccCCCCCCCcCCCCccChHHHHHH
Confidence 999999 99999999999999999999999999999998 334 7899999999999999999999999876
No 31
>KOG1526|consensus
Probab=100.00 E-value=2.3e-34 Score=243.71 Aligned_cols=147 Identities=73% Similarity=1.202 Sum_probs=139.6
Q ss_pred ccccchHHHHHHHHHHHHHHHhCCCCEEEEeCCCcccccchHHHHHHHHHHHhhcccccccCCeEEeeeeHHHHHHHHHh
Q psy12309 3 ADSRPESTFWIFGKPTYNVALQKKWPLYLSTKNTILKKYDGHFKDIFQEVYEKNYKSQFEQAKIWYEHRLIDDMVAQALK 82 (152)
Q Consensus 3 ~~~~t~~~~eRiar~AF~~A~~r~~~Vt~v~KaNvl~~~dglf~~v~~eva~~~yp~~f~~~~I~~~~~~iD~~~~~lv~ 82 (152)
+++||.++++-+|+.+|++|++++.++++.+|.+|||.+||.|+++|+|+++.+|+.+|++.+|+|||++||+|++|+++
T Consensus 191 ~m~~~dds~~~FAhssf~~Al~kk~pLylsTKNTILKkYDgrFKdiFqeiye~~yk~kfe~~~IwYEHRLIDDmVAqa~K 270 (422)
T KOG1526|consen 191 MMYNTDDSIRGFAHSSFQYALQKKWPLYLSTKNTILKKYDGRFKDIFQEIYEKQYKSKFEALGIWYEHRLIDDMVAQAMK 270 (422)
T ss_pred EEeeccchhhHHHHHHHHHHHHhcCceeeeccchHHHHhCChHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHh
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEecCCchhhhhhhhhhhcCCCccccccccCCCCCeEEEecCCCCcccccccccC-Cccccc
Q psy12309 83 GNGGFVWACKNYDGDVQSDIVAQGYGSLGLMTSILMCPDGKTIESEAAHGTVTRHYRFLGI-NDINTN 149 (152)
Q Consensus 83 ~P~~fViv~~Nl~GDIlSDlaa~l~GglGl~psanig~~~~~a~fEp~HGsApdiagk~~a-np~~~~ 149 (152)
+-++|||.|.|++||+-||..|+..|||||+.|..+.|||++...|++|||..+++.+++. +++.||
T Consensus 271 S~GGfvwAcKNYDGDVqSD~vAQg~GSLGlMTSVLv~pdGKT~EaEAAHGTVtRHyr~hqkG~eTSTN 338 (422)
T KOG1526|consen 271 SEGGFVWACKNYDGDVQSDIVAQGYGSLGLMTSVLVCPDGKTVEAEAAHGTVTRHYRMHQKGQETSTN 338 (422)
T ss_pred cCCceEEEeecCCCchhhhHHHhcccchhhheeEEEcCCCCeeeeeccccchhHHHHHHhcCCCccCc
Confidence 9999999999999999999999999999999999999999888999999999999998776 334333
No 32
>PF04166 PdxA: Pyridoxal phosphate biosynthetic protein PdxA; InterPro: IPR005255 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents 4-hydroxythreonine-4-phosphate dehydrogenase (PdxA, 1.1.1.262 from EC). PdxA takes part in vitamin B6 biosynthesis, forming pyridoxine 5'-phosphate from 4-(phosphohydroxy)-L-threonine and 1-deoxy-D-xylulose-5-phosphate.; GO: 0050570 4-hydroxythreonine-4-phosphate dehydrogenase activity, 0051287 NAD binding, 0008615 pyridoxine biosynthetic process, 0055114 oxidation-reduction process; PDB: 1YXO_A 1PS6_A 1PS7_C 1PTM_B 1R8K_B 2HI1_A 3LXY_A 3TSN_B.
Probab=91.62 E-value=0.062 Score=46.06 Aligned_cols=24 Identities=17% Similarity=0.008 Sum_probs=18.2
Q ss_pred EEEecCCCCcccccccccCCcccc
Q psy12309 125 IESEAAHGTVTRHYRFLGINDINT 148 (152)
Q Consensus 125 a~fEp~HGsApdiagk~~anp~~~ 148 (152)
.---|.||||-|||||++|||..+
T Consensus 267 iRTS~DHGTAfDIAGkg~A~~~s~ 290 (298)
T PF04166_consen 267 IRTSPDHGTAFDIAGKGIADPSSM 290 (298)
T ss_dssp EEEEESS-S-CCGTTTTTS-THHH
T ss_pred eeecCCCCchhhhhCCCCCChHHH
Confidence 456899999999999999999765
No 33
>COG1995 PdxA Pyridoxal phosphate biosynthesis protein [Coenzyme metabolism]
Probab=89.21 E-value=0.12 Score=45.09 Aligned_cols=39 Identities=13% Similarity=-0.069 Sum_probs=27.1
Q ss_pred ccccccccCCCCCeEEEecCCCCcccccccccCCccccc
Q psy12309 111 GLMTSILMCPDGKTIESEAAHGTVTRHYRFLGINDINTN 149 (152)
Q Consensus 111 Gl~psanig~~~~~a~fEp~HGsApdiagk~~anp~~~~ 149 (152)
|+--+.|+.-.=-..---|-||||-|||||++|||..+.
T Consensus 278 ~Fd~~VNvtlGLPfiRTS~DHGTAfDiAgkGiA~~~S~~ 316 (332)
T COG1995 278 GFDRGVNVTLGLPFIRTSVDHGTAFDIAGKGIADPGSLI 316 (332)
T ss_pred ccccceEEecCCCeeeecCCccchhhhhcCCcCCchHHH
Confidence 444555654210034567899999999999999997654
No 34
>PRK03371 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase 2; Provisional
Probab=88.83 E-value=0.14 Score=44.54 Aligned_cols=24 Identities=21% Similarity=0.076 Sum_probs=20.9
Q ss_pred EEEecCCCCcccccccccCCcccc
Q psy12309 125 IESEAAHGTVTRHYRFLGINDINT 148 (152)
Q Consensus 125 a~fEp~HGsApdiagk~~anp~~~ 148 (152)
.---|.||||-|||||++|||..+
T Consensus 292 iRTS~DHGTAfDIAGkG~A~~~S~ 315 (326)
T PRK03371 292 IRTSADHGTAFDIAWTGKAKSESM 315 (326)
T ss_pred eEecCCCCchhhhhcCCcCCHHHH
Confidence 455789999999999999999765
No 35
>PRK00232 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed
Probab=88.63 E-value=0.14 Score=44.60 Aligned_cols=24 Identities=17% Similarity=-0.068 Sum_probs=20.9
Q ss_pred EEEecCCCCcccccccccCCcccc
Q psy12309 125 IESEAAHGTVTRHYRFLGINDINT 148 (152)
Q Consensus 125 a~fEp~HGsApdiagk~~anp~~~ 148 (152)
.---|.||||-|||||++|||..+
T Consensus 293 iRTS~DHGTAfDIAGkg~A~~~S~ 316 (332)
T PRK00232 293 IRTSVDHGTALDLAGKGIADVGSF 316 (332)
T ss_pred eEeCCCCcchhhhhcCCCCCHHHH
Confidence 355789999999999999999765
No 36
>PRK01909 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Validated
Probab=87.77 E-value=0.17 Score=44.04 Aligned_cols=131 Identities=8% Similarity=-0.111 Sum_probs=64.8
Q ss_pred ccchHHHHHHHHHHHHHHHhC-C--C-CE-EEEeCCCcccccchHH-HHHHHHHHHhhcccccccCCeEEe-eeeHHHHH
Q psy12309 5 SRPESTFWIFGKPTYNVALQK-K--W-PL-YLSTKNTILKKYDGHF-KDIFQEVYEKNYKSQFEQAKIWYE-HRLIDDMV 77 (152)
Q Consensus 5 ~~t~~~~eRiar~AF~~A~~r-~--~-~V-t~v~KaNvl~~~dglf-~~v~~eva~~~yp~~f~~~~I~~~-~~~iD~~~ 77 (152)
..|.+.+.+.++...+.-++. + + ++ .+.-.... --+|+| +|-.+.+.-. - ++..+.++.++ ..-.|++-
T Consensus 173 ~it~e~i~~~i~l~~~~l~~~~gi~~PrIaV~GLNPHA--GE~G~~G~EE~~iI~PA-i-~~~~~~Gi~v~GP~paDt~F 248 (329)
T PRK01909 173 ALTIDGLVETLAIIDRDLRRDFGLAAPRILVTGLNPHA--GENGYLGREEIDVIEPA-L-ARARAAGIDARGPYPADTLF 248 (329)
T ss_pred HhCHHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCCCC--CCCCCCcHHHHHHHHHH-H-HHHHHCCCCccCCCCchhhc
Confidence 356777777777777655522 2 2 32 22222222 224666 5543332200 0 00111244433 44456554
Q ss_pred HHHHhCCCCe-EEEecCCchhhhhhhhhhhcCCCccccccccCCCCC-eEEEecCCCCcccccccccCCcccc
Q psy12309 78 AQALKGNGGF-VWACKNYDGDVQSDIVAQGYGSLGLMTSILMCPDGK-TIESEAAHGTVTRHYRFLGINDINT 148 (152)
Q Consensus 78 ~~lv~~P~~f-Viv~~Nl~GDIlSDlaa~l~GglGl~psanig~~~~-~a~fEp~HGsApdiagk~~anp~~~ 148 (152)
.+..+ +.| ++||. | =|.+---.=-+++-.+.|+-- |. ..---|.||||-|||||++|||..+
T Consensus 249 ~~~~~--~~~D~vvaM--Y----HDQGliP~K~l~F~~gVNvTl-GLP~iRTSvDHGTAfDIAGkg~A~~~S~ 312 (329)
T PRK01909 249 QPRYL--EDADCVLAM--F----HDQGLPVLKYATFGEGINVTL-GLPIIRTSVDHGTALDLAGTGRADPGSM 312 (329)
T ss_pred ccccc--cCCCEEEEc--c----ccccchhheecccCcceEEec-CCCeeEeCCCCcchhhhhcCCCCCHHHH
Confidence 44433 457 55552 3 234222222333334444421 11 3455789999999999999999765
No 37
>PRK03743 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Validated
Probab=87.73 E-value=0.17 Score=44.04 Aligned_cols=24 Identities=13% Similarity=0.117 Sum_probs=21.0
Q ss_pred EEEecCCCCcccccccccCCcccc
Q psy12309 125 IESEAAHGTVTRHYRFLGINDINT 148 (152)
Q Consensus 125 a~fEp~HGsApdiagk~~anp~~~ 148 (152)
.---|.||||-|||||++|||.++
T Consensus 293 iRTS~DHGTAfDIAGkg~A~~~S~ 316 (332)
T PRK03743 293 LRTSVDHGTAFDIAGTGKASSVSM 316 (332)
T ss_pred eEeCCCCcchhhhhcCCCCCHHHH
Confidence 456789999999999999999765
No 38
>TIGR00557 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase. This model represents PdxA, an NAD+-dependent 4-hydroxythreonine 4-phosphate dehydrogenase (EC 1.1.1.262) active in pyridoxal phosphate biosynthesis.
Probab=87.67 E-value=0.18 Score=43.74 Aligned_cols=24 Identities=17% Similarity=0.008 Sum_probs=20.7
Q ss_pred EEEecCCCCcccccccccCCcccc
Q psy12309 125 IESEAAHGTVTRHYRFLGINDINT 148 (152)
Q Consensus 125 a~fEp~HGsApdiagk~~anp~~~ 148 (152)
.---|.||||-|||||++|||..+
T Consensus 286 iRTS~DHGTAfDIAGkg~A~~~S~ 309 (320)
T TIGR00557 286 IRTSPDHGTAFDIAGKGKADPGSL 309 (320)
T ss_pred eEeCCCCcchhhhhcCCCCCHHHH
Confidence 345789999999999999999764
No 39
>PRK03946 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=87.59 E-value=0.18 Score=43.55 Aligned_cols=24 Identities=17% Similarity=0.054 Sum_probs=20.9
Q ss_pred EEEecCCCCcccccccc-cCCcccc
Q psy12309 125 IESEAAHGTVTRHYRFL-GINDINT 148 (152)
Q Consensus 125 a~fEp~HGsApdiagk~-~anp~~~ 148 (152)
.---|.||||-|||||+ +|||..+
T Consensus 269 iRTSpDHGTAfDIAGkg~~A~~~S~ 293 (307)
T PRK03946 269 LRTSVDHGTAFDIAYKNAKANTKSY 293 (307)
T ss_pred eEecCCCCchhhhcCCCCcCCHHHH
Confidence 34578999999999999 9999765
No 40
>PRK05312 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=87.49 E-value=0.18 Score=43.99 Aligned_cols=24 Identities=17% Similarity=-0.056 Sum_probs=20.8
Q ss_pred EEEecCCCCcccccccccCCcccc
Q psy12309 125 IESEAAHGTVTRHYRFLGINDINT 148 (152)
Q Consensus 125 a~fEp~HGsApdiagk~~anp~~~ 148 (152)
.---|.||||-|||||++|||..+
T Consensus 298 iRTSvDHGTAfDIAGkg~A~~~S~ 321 (336)
T PRK05312 298 IRTSPDHGTAFDIAGKGIARPDSL 321 (336)
T ss_pred eEeCCCCcchhhhhcCCCCCHHHH
Confidence 345789999999999999999765
No 41
>PRK02746 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=87.20 E-value=0.19 Score=44.00 Aligned_cols=76 Identities=11% Similarity=-0.111 Sum_probs=42.6
Q ss_pred eEEe-eeeHHHHHHHHHhC------CCCe-EEEecCCchhhhhhhhhhhcCCCccccccccCCCCC-eEEEecCCCCccc
Q psy12309 66 IWYE-HRLIDDMVAQALKG------NGGF-VWACKNYDGDVQSDIVAQGYGSLGLMTSILMCPDGK-TIESEAAHGTVTR 136 (152)
Q Consensus 66 I~~~-~~~iD~~~~~lv~~------P~~f-Viv~~Nl~GDIlSDlaa~l~GglGl~psanig~~~~-~a~fEp~HGsApd 136 (152)
+.+. ..-.|++-.+-.+. .+.| ++||. | =|.+--=.=-+++-.+.|+-- |. ..---|.||||-|
T Consensus 245 ~~v~GP~paDt~F~~~~~~~~~~~~~~~~D~vvaM--Y----HDQGliP~K~l~F~~gVNvTl-GLP~iRTS~DHGTAfD 317 (345)
T PRK02746 245 IQLLGPIPPDTCWVSPAQAWYGKGVAEAPDGYLAL--Y----HDQGLIPVKLMAFDRAVNTTI-GLPFIRTSPDHGTAFD 317 (345)
T ss_pred ceeeCCCCchhhccccccccccccccCCCCEEEEC--c----ccCCChhheeeccCcceEEec-CCCeeEeCCCCcchhh
Confidence 4443 44556655554442 2467 66663 3 233222222233444445421 11 3455789999999
Q ss_pred ccccccCCcccc
Q psy12309 137 HYRFLGINDINT 148 (152)
Q Consensus 137 iagk~~anp~~~ 148 (152)
||||++|||..+
T Consensus 318 IAGkg~A~~~S~ 329 (345)
T PRK02746 318 IAGKGIARPQSM 329 (345)
T ss_pred hhcCCCCCHHHH
Confidence 999999999765
No 42
>PF03971 IDH: Monomeric isocitrate dehydrogenase; InterPro: IPR004436 This family of enzymes catalyses the NADP(+)-dependent oxidative decarboxylation of isocitrate to form 2-oxoglutarate, CO2, and NADPH within the Krebs cycle (1.1.1.42 from EC). Thus this enzyme supplies the cell with a key intermediate in energy metabolism, and precursors for biosynthetic pathways. The activity of this enzyme, which is controlled by phosphorylation, helps regulate carbon flux between the Krebs cycle and the glyoxylate bypass, which is an alternate route that accumulates carbon for biosynthesis when acetate is the sole carbon source for growth []. The phosphorylation state of this enzyme is controlled by isocitrate dehydrogenase kinase/phosphatase. This family has been found in a number of bacterial species including Azotobacter vinelandii, Corynebacterium glutamicum, Rhodomicrobium vannielii, and Neisseria meningitidis. The structure of isocitrate dehydrogenase from Azotobacter vinelandii (P16100 from SWISSPROT) has been determined []. This molecule consists of two distinct domains, a small domain and a large domain, with a folding topology similar to that of dimeric isocitrate dehydrogenase from Escherichia coli (P08200 from SWISSPROT). The structure of the large domain repeats a motif observed in the dimeric enzyme. Such a fusional structure by domain duplication enables a single polypeptide chain to form a structure at the catalytic site that is homologous to the dimeric enzyme, the catalytic site of which is located at the interface of two identical subunits.; GO: 0004450 isocitrate dehydrogenase (NADP+) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process; PDB: 1ITW_D 1J1W_A 3MBC_A 2B0T_A.
Probab=64.15 E-value=33 Score=32.76 Aligned_cols=123 Identities=18% Similarity=0.201 Sum_probs=63.9
Q ss_pred hHHHHHHHHHHHHHHHhCCCC-EEEEeCCCcccccchHHHHHHHHHHHhhcccccccCCeEEeeee-HHHHHHHH--HhC
Q psy12309 8 ESTFWIFGKPTYNVALQKKWP-LYLSTKNTILKKYDGHFKDIFQEVYEKNYKSQFEQAKIWYEHRL-IDDMVAQA--LKG 83 (152)
Q Consensus 8 ~~~~eRiar~AF~~A~~r~~~-Vt~v~KaNvl~~~dglf~~v~~eva~~~yp~~f~~~~I~~~~~~-iD~~~~~l--v~~ 83 (152)
+.-++.+++.|.+.|+..+.+ |.-.|+.- .-| ++..+.| ++|=....-.|+.++-+- +|++-.-| ++.
T Consensus 459 D~pI~DWVkLAV~Rar~tg~paiFWLD~~R---AHD---a~lI~kV--~~yL~~hdt~gldi~Im~P~~A~~~sler~r~ 530 (735)
T PF03971_consen 459 DAPIRDWVKLAVNRARATGTPAIFWLDENR---AHD---AELIKKV--EKYLKDHDTSGLDIRIMSPVEATRFSLERIRA 530 (735)
T ss_dssp HHHHHHHHHHHHHHHHHHT--EEEE--TTS---HHH---HHHHHHH--HHHHTTS--TT--EEEE-HHHHHHHHHHHHHT
T ss_pred CchHHHHHHHHHHHHHhhCCCeEEecCCCC---ccH---HHHHHHH--HHHHHhcCCCCCceEeeCHHHHHHHHHHHHHc
Confidence 456888999999999998886 55555432 223 3444444 233323333467766654 44443333 333
Q ss_pred CCCeEEEecCCchhhhhhhhhhh-cCCCcccccc--ccCCCCCeEEEec-CCCCcccccccc
Q psy12309 84 NGGFVWACKNYDGDVQSDIVAQG-YGSLGLMTSI--LMCPDGKTIESEA-AHGTVTRHYRFL 141 (152)
Q Consensus 84 P~~fViv~~Nl~GDIlSDlaa~l-~GglGl~psa--nig~~~~~a~fEp-~HGsApdiagk~ 141 (152)
-..-+=|+-|..=|+|+||.--| .|.-.-+-|. .+. | -++||. +-||||+|.-|-
T Consensus 531 G~dTISVTGNVLRDYLTDLFPILELGTSAKMLSIVPLm~--G-GGLFETGAGGSAPKHVqQf 589 (735)
T PF03971_consen 531 GKDTISVTGNVLRDYLTDLFPILELGTSAKMLSIVPLMN--G-GGLFETGAGGSAPKHVQQF 589 (735)
T ss_dssp T---EEEE-HHHHHHHHHHHHHHHHS-STTSEEEEEBTT--S--EEEES-SS---HHHHHHH
T ss_pred CCCeEEeechHHHhhhcchhhhhhhccchhhhhhhhccc--C-CceeccCCCCCccHHHHHH
Confidence 33338999999999999998776 2322211111 111 2 279999 557999997653
No 43
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=59.57 E-value=92 Score=25.09 Aligned_cols=93 Identities=15% Similarity=0.145 Sum_probs=63.9
Q ss_pred chHHHHHHHHHHHHHHHhCCCCEEEEeCCCcccccchHHHHHHHHHHHhhcccccccCCeEEee-eeHHHHHHHHHhCCC
Q psy12309 7 PESTFWIFGKPTYNVALQKKWPLYLSTKNTILKKYDGHFKDIFQEVYEKNYKSQFEQAKIWYEH-RLIDDMVAQALKGNG 85 (152)
Q Consensus 7 t~~~~eRiar~AF~~A~~r~~~Vt~v~KaNvl~~~dglf~~v~~eva~~~yp~~f~~~~I~~~~-~~iD~~~~~lv~~P~ 85 (152)
.-+..||++--|.+.|.+. ..|.++|---=|...+.-|++..+++...+=| =|..-| ..-|-...++-+.+.
T Consensus 82 ~v~~le~i~~~al~rA~~~-aDvIIIDEIGpMElks~~f~~~ve~vl~~~kp------liatlHrrsr~P~v~~ik~~~~ 154 (179)
T COG1618 82 NVEGLEEIAIPALRRALEE-ADVIIIDEIGPMELKSKKFREAVEEVLKSGKP------LIATLHRRSRHPLVQRIKKLGG 154 (179)
T ss_pred eHHHHHHHhHHHHHHHhhc-CCEEEEecccchhhccHHHHHHHHHHhcCCCc------EEEEEecccCChHHHHhhhcCC
Confidence 4567999999999999875 57999999888998899999999999855444 344444 323333334333333
Q ss_pred CeEEEecCCchhhhhhhhhhh
Q psy12309 86 GFVWACKNYDGDVQSDIVAQG 106 (152)
Q Consensus 86 ~fViv~~Nl~GDIlSDlaa~l 106 (152)
-+|++++-=-+-|+.++.+.|
T Consensus 155 v~v~lt~~NR~~i~~~Il~~L 175 (179)
T COG1618 155 VYVFLTPENRNRILNEILSVL 175 (179)
T ss_pred EEEEEccchhhHHHHHHHHHh
Confidence 336477644447777766655
No 44
>TIGR00178 monomer_idh isocitrate dehydrogenase, NADP-dependent, monomeric type. The monomeric type of isocitrate dehydrogenase has been found so far in a small number of species, including Azotobacter vinelandii, Corynebacterium glutamicum, Rhodomicrobium vannielii, and Neisseria meningitidis. It is NADP-specific.
Probab=59.04 E-value=53 Score=31.44 Aligned_cols=120 Identities=16% Similarity=0.137 Sum_probs=70.6
Q ss_pred hHHHHHHHHHHHHHHHhCCCC-EEEEeCCCcccccchHHHHHHHHHHHhhcccccccCCeEEeeee-HHHHH--HHHHhC
Q psy12309 8 ESTFWIFGKPTYNVALQKKWP-LYLSTKNTILKKYDGHFKDIFQEVYEKNYKSQFEQAKIWYEHRL-IDDMV--AQALKG 83 (152)
Q Consensus 8 ~~~~eRiar~AF~~A~~r~~~-Vt~v~KaNvl~~~dglf~~v~~eva~~~yp~~f~~~~I~~~~~~-iD~~~--~~lv~~ 83 (152)
+.-++.+++.|.+.|+..+.+ |.-.|+.-. -| ++..+.| +.|=....-.|+.++-+- ++++- +.-+++
T Consensus 463 D~pI~DWVkLAV~Rar~sg~pavFWLD~~Ra---HD---a~lI~kV--~~yL~~hdt~gldi~Im~p~~A~~~slerir~ 534 (741)
T TIGR00178 463 DAPIQDWVKLAVTRARATGTPAVFWLDPARA---HD---AQLIKKV--ETYLKDHDTEGLDIQILSPVEATRFSLARIRR 534 (741)
T ss_pred CchHHHHHHHHHHHHHhcCCCeEEEeCCCch---hH---HHHHHHH--HHHHHhcCCCCCceEeeCHHHHHHHHHHHHHc
Confidence 455888999999999998886 555554321 23 2333333 112111112266666553 34433 233344
Q ss_pred CCCeEEEecCCchhhhhhhhhhhcCCCcccccccc---CC--CCCeEEEec-CCCCccccccc
Q psy12309 84 NGGFVWACKNYDGDVQSDIVAQGYGSLGLMTSILM---CP--DGKTIESEA-AHGTVTRHYRF 140 (152)
Q Consensus 84 P~~fViv~~Nl~GDIlSDlaa~l~GglGl~psani---g~--~~~~a~fEp-~HGsApdiagk 140 (152)
-+.-+=|+-|..=|+|+||.--|- |-+|+-+ =| .| -++||. +-||||+|.-|
T Consensus 535 G~dTISVTGNVLRDYLTDLFPILE----lGTSAKMLSIVPLm~G-GGLFETGAGGSAPKHVqQ 592 (741)
T TIGR00178 535 GEDTISVTGNVLRDYLTDLFPILE----LGTSAKMLSIVPLMAG-GGLFETGAGGSAPKHVQQ 592 (741)
T ss_pred CCCeEEEechhHHhhhcchhhhhh----hccchhhhhhhhcccC-CceecCCCCCCccHHHHH
Confidence 444488999999999999987762 2233321 01 12 279999 45799999655
No 45
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=55.71 E-value=15 Score=24.97 Aligned_cols=26 Identities=8% Similarity=-0.148 Sum_probs=20.8
Q ss_pred hHHHHHHHHHHHHHHHhCCCCEEEEe
Q psy12309 8 ESTFWIFGKPTYNVALQKKWPLYLST 33 (152)
Q Consensus 8 ~~~~eRiar~AF~~A~~r~~~Vt~v~ 33 (152)
.+.+++.+++|.++|...+.+|+++|
T Consensus 12 ~~~~~~al~~a~~la~~~~~~i~~l~ 37 (140)
T PF00582_consen 12 SEESRRALRFALELAKRSGAEITLLH 37 (140)
T ss_dssp SHHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred CHHHHHHHHHHHHHHHhhCCeEEEEE
Confidence 45678999999999999777765554
No 46
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=52.54 E-value=21 Score=24.68 Aligned_cols=26 Identities=8% Similarity=-0.171 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHhCCCCEEEEeC
Q psy12309 9 STFWIFGKPTYNVALQKKWPLYLSTK 34 (152)
Q Consensus 9 ~~~eRiar~AF~~A~~r~~~Vt~v~K 34 (152)
+.+++++++|..+|...+.+|+++|=
T Consensus 10 ~~~~~~l~~a~~la~~~~~~v~ll~v 35 (132)
T cd01988 10 NTARDLLELAAALARAQNGEIIPLNV 35 (132)
T ss_pred hhHHHHHHHHHHHhhcCCCeEEEEEE
Confidence 67899999999999987777766653
No 47
>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed
Probab=49.41 E-value=2.1e+02 Score=27.87 Aligned_cols=97 Identities=5% Similarity=-0.064 Sum_probs=60.1
Q ss_pred chHHHHHHHHHHHHHHHhCCC--CEEEE---eCCCcccccchHHHHHHHHHHHhhcccccccCCeEEe-eeeHHHHHHHH
Q psy12309 7 PESTFWIFGKPTYNVALQKKW--PLYLS---TKNTILKKYDGHFKDIFQEVYEKNYKSQFEQAKIWYE-HRLIDDMVAQA 80 (152)
Q Consensus 7 t~~~~eRiar~AF~~A~~r~~--~Vt~v---~KaNvl~~~dglf~~v~~eva~~~yp~~f~~~~I~~~-~~~iD~~~~~l 80 (152)
|.+.-..|++.+-++|+.-+. +|-+. ++.+---.+...-++..+-+ ++++| ++.++ +.-.|++.-.-
T Consensus 602 taeqLa~IA~~aa~~ar~lGiePRVALLS~Sn~Gse~~k~~~~vreA~~ll-k~~~~------~l~~dGemq~D~Al~~~ 674 (752)
T PRK07232 602 TAEELAEIALMAAEEVRRFGIEPRVALLSHSNFGSSDSPSARKMREAVELL-RERAP------DLEVDGEMHGDAALNEE 674 (752)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCCeEEEEeccccCCCCCCcHHHHHHHHHHH-HhhCC------CcEEEEechHHHhCCHH
Confidence 345556678888889987654 57666 66664322444556666544 46677 77776 34456553211
Q ss_pred ---HhCCC-----Ce-EEEecCCc-hhhhhhhhhhhcCCC
Q psy12309 81 ---LKGNG-----GF-VWACKNYD-GDVQSDIVAQGYGSL 110 (152)
Q Consensus 81 ---v~~P~-----~f-Viv~~Nl~-GDIlSDlaa~l~Ggl 110 (152)
.+-|. .- |+|.||+. |+|+--+.-.+.|+.
T Consensus 675 va~~K~p~s~vaG~ANVLIfPdLeaGNI~yKllq~l~g~~ 714 (752)
T PRK07232 675 IRKDLYPFSRLKGPANVLVMPNLEAANISYNLLKELGGGV 714 (752)
T ss_pred HHHhhCCCCccCCcCCEEEeCCchhhHHHHHHHHHhcCCe
Confidence 12222 22 99999997 899888877775553
No 48
>KOG1671|consensus
Probab=49.06 E-value=13 Score=30.53 Aligned_cols=39 Identities=15% Similarity=-0.020 Sum_probs=31.4
Q ss_pred CCccccccccCCCCCeEEEecCCCCcccccccccCCccccc
Q psy12309 109 SLGLMTSILMCPDGKTIESEAAHGTVTRHYRFLGINDINTN 149 (152)
Q Consensus 109 glGl~psanig~~~~~a~fEp~HGsApdiagk~~anp~~~~ 149 (152)
-||..|-+|-|+-| ..|-|.|||-=|+.|+=-.+|--.|
T Consensus 155 hLGCVp~~~AGd~g--g~~CPCHGSHYdasGRIrkGPAPln 193 (210)
T KOG1671|consen 155 HLGCVPIANAGDYG--GYYCPCHGSHYDASGRIRKGPAPLN 193 (210)
T ss_pred cccccccccccccC--ceecccccccccccCceecCCCCCc
Confidence 35888999999776 6999999999999998766764443
No 49
>KOG1014|consensus
Probab=47.64 E-value=42 Score=29.21 Aligned_cols=35 Identities=14% Similarity=0.294 Sum_probs=26.5
Q ss_pred HHHHHHHHhCCCCEEEEeCCCcccccchHHHHHHHHHHHhhcc
Q psy12309 16 KPTYNVALQKKWPLYLSTKNTILKKYDGHFKDIFQEVYEKNYK 58 (152)
Q Consensus 16 r~AF~~A~~r~~~Vt~v~KaNvl~~~dglf~~v~~eva~~~yp 58 (152)
.||+|+|+ ||.+|.++- + +..-...+.+|+. ++|+
T Consensus 64 ayA~eLAk-rG~nvvLIs-----R-t~~KL~~v~kEI~-~~~~ 98 (312)
T KOG1014|consen 64 AYARELAK-RGFNVVLIS-----R-TQEKLEAVAKEIE-EKYK 98 (312)
T ss_pred HHHHHHHH-cCCEEEEEe-----C-CHHHHHHHHHHHH-HHhC
Confidence 58999997 688888754 4 5667788888886 6665
No 50
>COG0723 QcrA Rieske Fe-S protein [Energy production and conversion]
Probab=46.37 E-value=22 Score=27.51 Aligned_cols=47 Identities=11% Similarity=-0.121 Sum_probs=34.3
Q ss_pred hhhhhhhhhcCCCccccccc-cCCCCCeEEEecCCCCcccccccccCCcccccc
Q psy12309 98 VQSDIVAQGYGSLGLMTSIL-MCPDGKTIESEAAHGTVTRHYRFLGINDINTNV 150 (152)
Q Consensus 98 IlSDlaa~l~GglGl~psan-ig~~~~~a~fEp~HGsApdiagk~~anp~~~~~ 150 (152)
.+|.+|..| |..|+.| -+.+ ..+|-|.|||.=|..|+-+.+|--.++
T Consensus 103 a~~~iCtHl----GC~~~~~~~~~~--~~~~CPCHGS~yd~~g~vv~GPA~~~L 150 (177)
T COG0723 103 AYSAICTHL----GCTVPWNNAGAE--GGFFCPCHGSRYDPDGGVVKGPAPRPL 150 (177)
T ss_pred EEeeeccCC----CCccCcccCCCC--CeEEccCCCCeEcCCCCeeCCCCCCCc
Confidence 455555554 7888886 2233 369999999999999998888866554
No 51
>TIGR00651 pta phosphate acetyltransferase. Model contains a gene from E.coli coding for ethanolamine utilization protein (euti) and also contains similarity to malate oxidoreductases
Probab=44.57 E-value=1.3e+02 Score=25.64 Aligned_cols=96 Identities=11% Similarity=0.051 Sum_probs=54.8
Q ss_pred chHHHHHHHHHHHHHHHhCC-C--CE---EEEeCCCcccccchHHHHHHHHHHHhhcccccccCCeEEe-eeeHHHHHHH
Q psy12309 7 PESTFWIFGKPTYNVALQKK-W--PL---YLSTKNTILKKYDGHFKDIFQEVYEKNYKSQFEQAKIWYE-HRLIDDMVAQ 79 (152)
Q Consensus 7 t~~~~eRiar~AF~~A~~r~-~--~V---t~v~KaNvl~~~dglf~~v~~eva~~~yp~~f~~~~I~~~-~~~iD~~~~~ 79 (152)
|.+....|+..|.++|+.-+ . || ..++|.|---.+...-++.++-+ ++++| ++.++ ++-.|++.-.
T Consensus 157 ~~e~l~~ia~~a~~~a~~lg~~~PkVAlLs~S~~gs~~~~~~~kv~eA~~l~-~~~~~------~~~vdG~l~~D~Al~~ 229 (303)
T TIGR00651 157 NAEQLAEIAIQSAKSAKSFGEIEPKVALLSYSTKGSGSGEDVEKVREATRIA-KEKRP------DLTIDGELQFDAAFVE 229 (303)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCCEEEEEeccCCCCCCCCccHHHHHHHHHH-hccCC------CeEEEecCchhhhCCH
Confidence 34455667888888998765 2 43 33445553222334556666544 45777 66665 3334654311
Q ss_pred H---HhCCC-----Ce-EEEecCCc-hhhhhhhhhhhcCC
Q psy12309 80 A---LKGNG-----GF-VWACKNYD-GDVQSDIVAQGYGS 109 (152)
Q Consensus 80 l---v~~P~-----~f-Viv~~Nl~-GDIlSDlaa~l~Gg 109 (152)
= .+-|. .- |+|+||++ |+|+--+.-.+.|+
T Consensus 230 ~~a~~K~~~s~v~G~AdvLV~Pnl~aGNi~~K~~~~~~~~ 269 (303)
T TIGR00651 230 KVAEKKAPNSPVAGSANVFVFPDLDAGNIGYKIVQRLGDA 269 (303)
T ss_pred HHHHhhCCCCccCCcCCEEEeCCchHHHHHHHHHHHhcCC
Confidence 1 22232 22 99999988 78877766655443
No 52
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=43.65 E-value=24 Score=25.27 Aligned_cols=25 Identities=12% Similarity=-0.201 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHhCCCCEEEEe
Q psy12309 9 STFWIFGKPTYNVALQKKWPLYLST 33 (152)
Q Consensus 9 ~~~eRiar~AF~~A~~r~~~Vt~v~ 33 (152)
+.+++.+++|+++|...+.+|+++|
T Consensus 10 ~~s~~al~~a~~~a~~~~~~l~ll~ 34 (146)
T cd01989 10 KKSKNALKWALDNLATKGQTIVLVH 34 (146)
T ss_pred cccHHHHHHHHHhccCCCCcEEEEE
Confidence 4678899999999988777877766
No 53
>COG0280 Pta Phosphotransacetylase [Energy production and conversion]
Probab=43.42 E-value=1.9e+02 Score=25.28 Aligned_cols=103 Identities=11% Similarity=0.090 Sum_probs=59.0
Q ss_pred chHHHHHHHHHHHHHHHhCCC--C---EEEEeCCCcccccchHHHHHHHHHHHhhcc-cccccCCeEEeeeeHHHHHHH-
Q psy12309 7 PESTFWIFGKPTYNVALQKKW--P---LYLSTKNTILKKYDGHFKDIFQEVYEKNYK-SQFEQAKIWYEHRLIDDMVAQ- 79 (152)
Q Consensus 7 t~~~~eRiar~AF~~A~~r~~--~---Vt~v~KaNvl~~~dglf~~v~~eva~~~yp-~~f~~~~I~~~~~~iD~~~~~- 79 (152)
|.++..-|+..|.+.|++-+- | +..+++.+---..-.--++..+ ++++..| +.--++++.+|--+.-..+.+
T Consensus 174 taeeladIa~~sa~~a~~fgi~PkVAlLS~St~gs~~~~~~~kv~ea~~-i~~~~~~~dl~vDGelq~DaA~~~~va~~k 252 (327)
T COG0280 174 TAEELADIAENAAETARRFGIEPKVALLSYSTFGSGKGPSTDKVREATK-ILRERAPPDLEVDGELQFDAALVEKVAAKK 252 (327)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCceEEEEeecCCCCCCccHHHHHHHHH-HHHhcCCccceeccCcchhhhcCHHHHHhh
Confidence 345556677788888887764 3 5556666643222224444443 4445555 333344444444444333333
Q ss_pred HHhCCCCe---EEEecCCc-hhhhhhhhhhhcCCC
Q psy12309 80 ALKGNGGF---VWACKNYD-GDVQSDIVAQGYGSL 110 (152)
Q Consensus 80 lv~~P~~f---Viv~~Nl~-GDIlSDlaa~l~Ggl 110 (152)
.-.+|-.- |+|.|||. |+|.--+.-.+.|..
T Consensus 253 ~p~s~vaG~ANvlVfP~LeagNI~yK~lq~~~~a~ 287 (327)
T COG0280 253 APDSPLAGSANVLVFPDLEAGNIGYKLLQRLGGAL 287 (327)
T ss_pred CCCCCcCCCCCEEEcCCchHHHHHHHHHHHhcCCc
Confidence 33345444 99999996 888888777766663
No 54
>PRK15005 universal stress protein F; Provisional
Probab=40.86 E-value=40 Score=23.98 Aligned_cols=23 Identities=9% Similarity=-0.291 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHhCCCCEEEEe
Q psy12309 11 FWIFGKPTYNVALQKKWPLYLST 33 (152)
Q Consensus 11 ~eRiar~AF~~A~~r~~~Vt~v~ 33 (152)
+++.+++|+++|++.+.+|+++|
T Consensus 17 ~~~a~~~a~~la~~~~~~l~ll~ 39 (144)
T PRK15005 17 TQRVISHVEAEAKIDDAEVHFLT 39 (144)
T ss_pred HHHHHHHHHHHHhccCCeEEEEE
Confidence 57899999999988777766554
No 55
>PRK09982 universal stress protein UspD; Provisional
Probab=40.44 E-value=34 Score=24.89 Aligned_cols=26 Identities=12% Similarity=-0.037 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHhCCCCEEEEeC
Q psy12309 9 STFWIFGKPTYNVALQKKWPLYLSTK 34 (152)
Q Consensus 9 ~~~eRiar~AF~~A~~r~~~Vt~v~K 34 (152)
+.+++.+++|+++|++.+-+|+++|=
T Consensus 14 ~~s~~al~~A~~lA~~~~a~l~llhV 39 (142)
T PRK09982 14 EEDALLVNKALELARHNDAHLTLIHI 39 (142)
T ss_pred cchHHHHHHHHHHHHHhCCeEEEEEE
Confidence 35689999999999987778777763
No 56
>PRK12862 malic enzyme; Reviewed
Probab=38.56 E-value=1.7e+02 Score=28.42 Aligned_cols=96 Identities=7% Similarity=0.070 Sum_probs=60.6
Q ss_pred cchHHHHHHHHHHHHHHHhCCC--CEEEEeCCCcc---cccchHHHHHHHHHHHhhcccccccCCeEEe-eeeHHHHHHH
Q psy12309 6 RPESTFWIFGKPTYNVALQKKW--PLYLSTKNTIL---KKYDGHFKDIFQEVYEKNYKSQFEQAKIWYE-HRLIDDMVAQ 79 (152)
Q Consensus 6 ~t~~~~eRiar~AF~~A~~r~~--~Vt~v~KaNvl---~~~dglf~~v~~eva~~~yp~~f~~~~I~~~-~~~iD~~~~~ 79 (152)
.|.+...++++.+.+++++-|. ||-+.--+|+- ......-++.++.. ++++| ++.++ ++-.|++.-.
T Consensus 609 pt~e~La~ia~~aa~~ar~~GIePRVAvLshs~~Gs~~~ee~~~i~pAiell-r~~~~------g~~VdGPl~aDtAf~~ 681 (763)
T PRK12862 609 PTAEELAEITILAAEEVRRFGIEPKVALLSHSNFGSSDSPSARKMREALEIL-RERAP------DLEVDGEMHGDAALDE 681 (763)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCCeEEEEcccccCCCCCchHHHHHHHHHHH-HhcCC------CcEEEcCCCHHHHcCH
Confidence 4677788899999999986553 56666222332 22333455666555 46778 77776 4556776544
Q ss_pred HHhC---C-----CCe-EEEecCCc-hhhhhhhhhhhcC
Q psy12309 80 ALKG---N-----GGF-VWACKNYD-GDVQSDIVAQGYG 108 (152)
Q Consensus 80 lv~~---P-----~~f-Viv~~Nl~-GDIlSDlaa~l~G 108 (152)
-+.. | +.+ |+|+||+. |+|.--+..-+.|
T Consensus 682 ~~~~~K~~~s~vaG~aDvLV~P~~DqGNI~~Kll~f~~g 720 (763)
T PRK12862 682 ELRDRIFPDSRLEGEANLLVFPNLDAANIAYNLLKTAAG 720 (763)
T ss_pred HHHhhcCCCCccCCCCCEEEecChhHhhHHHHHHHHhcc
Confidence 2222 2 347 99999997 8887776665543
No 57
>PRK12861 malic enzyme; Reviewed
Probab=38.11 E-value=3.9e+02 Score=26.10 Aligned_cols=94 Identities=7% Similarity=-0.014 Sum_probs=56.0
Q ss_pred hHHHHHHHHHHHHHHHhCCC--CEEEEe---CCCcccccchHHHHHHHHHHHhhcccccccCCeEEe-eeeHHHHHHHH-
Q psy12309 8 ESTFWIFGKPTYNVALQKKW--PLYLST---KNTILKKYDGHFKDIFQEVYEKNYKSQFEQAKIWYE-HRLIDDMVAQA- 80 (152)
Q Consensus 8 ~~~~eRiar~AF~~A~~r~~--~Vt~v~---KaNvl~~~dglf~~v~~eva~~~yp~~f~~~~I~~~-~~~iD~~~~~l- 80 (152)
.+....|+..|.++|+.-|. ||-+.. +.+.--......++..+- .++++| ++.++ ++-.|++.-.-
T Consensus 612 aeqla~Ia~~aa~~ak~lGiePkVAlLS~St~GS~~~~~~~km~eA~~l-~~~~~p------d~~vdGemq~DaAl~~e~ 684 (764)
T PRK12861 612 AEQIAEFTIAAARQMEWLNLTPKVALLSRSNFGSGSAASGVKMRRALEI-VREQAP------DLEADGEMHGDCALDEGL 684 (764)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCeEEEEeccccCCCCCCchhHHHHHHHH-HHhhCC------CcEEEecCcHHHhCCHHH
Confidence 34455567777788876654 455443 433322233466666664 456788 66666 34456443221
Q ss_pred --HhCCC-----Ce-EEEecCC-chhhhhhhhhhhcC
Q psy12309 81 --LKGNG-----GF-VWACKNY-DGDVQSDIVAQGYG 108 (152)
Q Consensus 81 --v~~P~-----~f-Viv~~Nl-~GDIlSDlaa~l~G 108 (152)
.+-|. .- |+|+||+ -|+|+-.+.-.+.|
T Consensus 685 a~~K~p~s~vaG~ANVLVfPnLeAGNI~yKll~~l~g 721 (764)
T PRK12861 685 RARLLPMSPLKGAANLLVCPNVDAGNIAYNLLKTEAG 721 (764)
T ss_pred HHhcCCCCcCCCcCCEEEECCcchhhHHHHHHHHHcC
Confidence 12222 22 9999999 89999888777765
No 58
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=37.74 E-value=53 Score=21.91 Aligned_cols=26 Identities=12% Similarity=-0.238 Sum_probs=21.5
Q ss_pred hHHHHHHHHHHHHHHHhCCCCEEEEe
Q psy12309 8 ESTFWIFGKPTYNVALQKKWPLYLST 33 (152)
Q Consensus 8 ~~~~eRiar~AF~~A~~r~~~Vt~v~ 33 (152)
.+.+.++.++|.++|..++.++++++
T Consensus 9 ~~~~~~~l~~a~~~a~~~~~~i~~l~ 34 (130)
T cd00293 9 SEESERALRWAARLARRLGAELVLLH 34 (130)
T ss_pred CHHHHHHHHHHHHHHHhcCCEEEEEE
Confidence 56788899999999999877777665
No 59
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=34.63 E-value=78 Score=28.54 Aligned_cols=25 Identities=8% Similarity=0.032 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHhCCCCEEEEeCCC
Q psy12309 12 WIFGKPTYNVALQKKWPLYLSTKNT 36 (152)
Q Consensus 12 eRiar~AF~~A~~r~~~Vt~v~KaN 36 (152)
-|++|..|++|+++...+.++|--.
T Consensus 230 aRlVRelF~lArekaPsIIFiDEID 254 (406)
T COG1222 230 ARLVRELFELAREKAPSIIFIDEID 254 (406)
T ss_pred hHHHHHHHHHHhhcCCeEEEEechh
Confidence 4899999999988766677776544
No 60
>COG2838 Icd Monomeric isocitrate dehydrogenase [Energy production and conversion]
Probab=34.49 E-value=3.2e+02 Score=25.98 Aligned_cols=124 Identities=15% Similarity=0.071 Sum_probs=68.5
Q ss_pred ccchHHHHHHHHHHHHHHHhCCCCEEEEeCCCcccccchHHHHHHHHHHHhhcccccccCCeEEeee-eHHHHHHH--HH
Q psy12309 5 SRPESTFWIFGKPTYNVALQKKWPLYLSTKNTILKKYDGHFKDIFQEVYEKNYKSQFEQAKIWYEHR-LIDDMVAQ--AL 81 (152)
Q Consensus 5 ~~t~~~~eRiar~AF~~A~~r~~~Vt~v~KaNvl~~~dglf~~v~~eva~~~yp~~f~~~~I~~~~~-~iD~~~~~--lv 81 (152)
...+.-++.+++.|.+.|+..+-++.+---.+ +..|.-...-++..- +++- -.|+.+.-+ .+.++-.- .+
T Consensus 462 q~kdapi~dWVkLaV~RarlS~~pavFWLDp~--Rahd~~li~kV~~yL-kdhd----t~GldI~Ilsp~ea~~~sl~rl 534 (744)
T COG2838 462 QVKDAPIRDWVKLAVTRARLSGMPAVFWLDPY--RAHDKELIKKVEAYL-KDHD----TNGLDIQILSPVEAMRYSLERL 534 (744)
T ss_pred hcccchHHHHHHHHHHHHhhcCCceEEEeCcC--ccchHHHHHHHHHHh-hhcC----CCCcceEEecHHHHHHHHHHHH
Confidence 34556688899999999988887643322222 223333332232221 1111 124444433 23333322 33
Q ss_pred hCCCCeEEEecCCchhhhhhhhhhhcCCCcccccccc---CC--CCCeEEEecC-CCCccccccc
Q psy12309 82 KGNGGFVWACKNYDGDVQSDIVAQGYGSLGLMTSILM---CP--DGKTIESEAA-HGTVTRHYRF 140 (152)
Q Consensus 82 ~~P~~fViv~~Nl~GDIlSDlaa~l~GglGl~psani---g~--~~~~a~fEp~-HGsApdiagk 140 (152)
++-+.-+-|+-|..-|+|+||.--|- |-+|+-+ =| .| -+|||.. .||||++.-|
T Consensus 535 ~~G~DtIsvTGNvLRDYlTDLFPIlE----LGTSAKMLSiVPlmaG-GgmfETGAGGSAPKhVqQ 594 (744)
T COG2838 535 RRGEDTISVTGNVLRDYLTDLFPILE----LGTSAKMLSIVPLMAG-GGMFETGAGGSAPKHVQQ 594 (744)
T ss_pred HcCCceeEecchHHHHHHhhhhhHhh----cccccchheeeeeccC-CceeecCCCCCCcHHHHH
Confidence 34344488999999999999987763 2233321 01 12 2799995 5799998554
No 61
>cd03470 Rieske_cytochrome_bc1 Iron-sulfur protein (ISP) component of the bc(1) complex family, Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. The bc(1) complex is a multisubunit enzyme found in many different organisms including uni- and multi-cellular eukaryotes, plants (in their mitochondria) and bacteria. The cytochrome bc(1) and b6f complexes are central components of the respiratory and photosynthetic electron transport chains, respectively, which carry out similar core electron and proton transfer steps. The bc(1) and b6f complexes share a common core structure of three catalytic subunits: cyt b, the Rieske ISP, and either a cyt c1 in the bc(1) complex or cyt f in the b6f complex, which are arranged in an integral membrane-bound dimeric complex. While the core of the b6f complex is similar to that of the bc(1) complex, the domain arrangement outside the core and the complement of prosthetic groups are strikingly different.
Probab=34.40 E-value=46 Score=24.76 Aligned_cols=26 Identities=12% Similarity=-0.105 Sum_probs=22.0
Q ss_pred EEEecCCCCcccccccccCCcccccc
Q psy12309 125 IESEAAHGTVTRHYRFLGINDINTNV 150 (152)
Q Consensus 125 a~fEp~HGsApdiagk~~anp~~~~~ 150 (152)
.++.|.|||.-|+.|+.+.+|--.|+
T Consensus 85 ~~~CPcHgs~Fdl~G~~~~gPa~~~L 110 (126)
T cd03470 85 GFFCPCHGSHYDASGRIRKGPAPLNL 110 (126)
T ss_pred EEEecCcCCEECCCCeEecCCCCCCC
Confidence 69999999999999998887765554
No 62
>PF01515 PTA_PTB: Phosphate acetyl/butaryl transferase; InterPro: IPR002505 This entry contains both phosphate acetyltransferase 2.3.1.8 from EC: Acetyl-CoA + phosphate = CoA + acetyl phosphate and phosphate butaryltransferase 2.3.1.19 from EC: Butanoyl-CoA + phosphate = CoA + butanoyl phosphate These enzymes catalyse the transfer of an acetyl or butaryl group to orthophosphate.; GO: 0016746 transferase activity, transferring acyl groups, 0008152 metabolic process; PDB: 2AF3_D 1QZT_D 2AF4_D 1VMI_A 3UF6_B 3U9E_A 3TNG_A 4E4R_A 1R5J_A 1YCO_A ....
Probab=34.12 E-value=3e+02 Score=23.61 Aligned_cols=93 Identities=10% Similarity=0.093 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHHhCC-C--CEEEEeCCCccc---ccchHHHHHHHHHHHhhcccccccCCeEEe-eeeHHHHHHHHH
Q psy12309 9 STFWIFGKPTYNVALQKK-W--PLYLSTKNTILK---KYDGHFKDIFQEVYEKNYKSQFEQAKIWYE-HRLIDDMVAQAL 81 (152)
Q Consensus 9 ~~~eRiar~AF~~A~~r~-~--~Vt~v~KaNvl~---~~dglf~~v~~eva~~~yp~~f~~~~I~~~-~~~iD~~~~~lv 81 (152)
+....|+..+.+.|+.-+ . ||-++.=+|.-. .+.---++.. +++++.+| +..+| ++-+|.+.-.-+
T Consensus 175 e~la~Ia~~aa~~~~~~g~~~PkvA~LS~s~~gs~~~~s~~~~~~a~-~~~~~~~~------~~~vdGe~q~D~Al~~~~ 247 (319)
T PF01515_consen 175 EQLAEIAENAAETARRFGIEEPKVALLSYSEFGSPKGPSTDKVREAV-EIAREKQP------DLIVDGEMQFDAALSPEV 247 (319)
T ss_dssp HHHHHHHHHHHHHHHHTTSSS-EEEEE-SSSTTSSTSHHHHHHHHHH-HHHHHHCT------TSEEEEEE-HHHHH-HHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCCeEEEEeCccCCCCCCchHHHHHHHH-HHHHhhCC------CceecCccccchhcCHHH
Confidence 444556777788888776 3 455544444322 1222334444 45667888 77777 567787663222
Q ss_pred h---CC-----CCe-EEEecCCc-hhhhhhhhhhhcC
Q psy12309 82 K---GN-----GGF-VWACKNYD-GDVQSDIVAQGYG 108 (152)
Q Consensus 82 ~---~P-----~~f-Viv~~Nl~-GDIlSDlaa~l~G 108 (152)
. -| +.- |+|.|||. |+|+.-+.-.+.|
T Consensus 248 ~~~k~~~s~v~G~AnvLIfPnl~agNi~~K~l~~~~~ 284 (319)
T PF01515_consen 248 AAKKYPFSPVAGDANVLIFPNLEAGNIAYKLLQRLGG 284 (319)
T ss_dssp HHHHSTTSSTTTC-SEEE-SSHHHHHHHHHHHHHTTT
T ss_pred HHHhCCCCccCCcCCEEEeCChhHhHHHHHHHHHhhC
Confidence 2 22 233 99999996 7887777766655
No 63
>PRK09732 hypothetical protein; Provisional
Probab=33.69 E-value=76 Score=24.06 Aligned_cols=34 Identities=6% Similarity=0.008 Sum_probs=27.9
Q ss_pred cccchHHHHHHHHHHHHHHHhCCCC--EEEEeCCCc
Q psy12309 4 DSRPESTFWIFGKPTYNVALQKKWP--LYLSTKNTI 37 (152)
Q Consensus 4 ~~~t~~~~eRiar~AF~~A~~r~~~--Vt~v~KaNv 37 (152)
...|.+..+++++.|.+.|++++.+ |.++|..-.
T Consensus 5 ~~Ltl~~A~~~~~aA~~~A~~~g~~v~iaVvD~~G~ 40 (134)
T PRK09732 5 VILSQQMASAIIAAGQEEAQKNNWSVSIAVADDGGH 40 (134)
T ss_pred ccCCHHHHHHHHHHHHHHHHHhCCCEEEEEEcCCCC
Confidence 3478899999999999999999875 677777643
No 64
>KOG3040|consensus
Probab=33.14 E-value=88 Score=26.37 Aligned_cols=81 Identities=16% Similarity=0.027 Sum_probs=59.0
Q ss_pred HHHHHHHHHHhCCC-CEEEEeCCCcccccchHHHHHHHHHHHhhcccccccCCeEEe------eeeHHHHHHHHHhCCCC
Q psy12309 14 FGKPTYNVALQKKW-PLYLSTKNTILKKYDGHFKDIFQEVYEKNYKSQFEQAKIWYE------HRLIDDMVAQALKGNGG 86 (152)
Q Consensus 14 iar~AF~~A~~r~~-~Vt~v~KaNvl~~~dglf~~v~~eva~~~yp~~f~~~~I~~~------~~~iD~~~~~lv~~P~~ 86 (152)
..-.||++-++.++ ++..+||.--.+..+||-...--=++.-||-. +++.. ..+...+.+-+=-+|++
T Consensus 126 ~ln~AFrvL~e~~k~~LIai~kgryykr~~Gl~lgpG~fv~aLeyat-----g~~a~vvGKP~~~fFe~al~~~gv~p~~ 200 (262)
T KOG3040|consen 126 RLNRAFRVLLEMKKPLLIAIGKGRYYKRVDGLCLGPGPFVAALEYAT-----GCEATVVGKPSPFFFESALQALGVDPEE 200 (262)
T ss_pred HHHHHHHHHHcCCCCeEEEecCceeeeeccccccCchHHHHHhhhcc-----CceEEEecCCCHHHHHHHHHhcCCChHH
Confidence 44569999999876 69999999999999999988766666567762 55543 33455555555567888
Q ss_pred eEEEecCCchhhh
Q psy12309 87 FVWACKNYDGDVQ 99 (152)
Q Consensus 87 fViv~~Nl~GDIl 99 (152)
-||+-.-+-+|+.
T Consensus 201 aVMIGDD~~dDvg 213 (262)
T KOG3040|consen 201 AVMIGDDLNDDVG 213 (262)
T ss_pred heEEccccccchh
Confidence 8998776665554
No 65
>COG3193 GlcG Uncharacterized protein, possibly involved in utilization of glycolate and propanediol [General function prediction only]
Probab=33.00 E-value=74 Score=24.64 Aligned_cols=30 Identities=10% Similarity=-0.168 Sum_probs=24.2
Q ss_pred ccchHHHHHHHHHHHHHHHhCCCCEE--EEeC
Q psy12309 5 SRPESTFWIFGKPTYNVALQKKWPLY--LSTK 34 (152)
Q Consensus 5 ~~t~~~~eRiar~AF~~A~~r~~~Vt--~v~K 34 (152)
+.|.+.++++++.|++-|++.+.+|| +||-
T Consensus 7 ~Ls~e~a~~ii~aA~a~a~~~g~~VtvaVVD~ 38 (141)
T COG3193 7 VLSLELANKIIAAAVAEAQQLGVPVTVAVVDA 38 (141)
T ss_pred ccCHHHHHHHHHHHHHHHHHhCCceEEEEECC
Confidence 46788899999999999999988644 4543
No 66
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=31.84 E-value=63 Score=22.33 Aligned_cols=25 Identities=16% Similarity=0.038 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHhCCCCEEEEe
Q psy12309 9 STFWIFGKPTYNVALQKKWPLYLST 33 (152)
Q Consensus 9 ~~~eRiar~AF~~A~~r~~~Vt~v~ 33 (152)
+..++..++|.++|.+.+.+++++|
T Consensus 10 ~~s~~al~~a~~la~~~~~~l~ll~ 34 (124)
T cd01987 10 PNAERLIRRAARLADRLKAPWYVVY 34 (124)
T ss_pred cchHHHHHHHHHHHHHhCCCEEEEE
Confidence 4578899999999998777777766
No 67
>PF14542 Acetyltransf_CG: GCN5-related N-acetyl-transferase; PDB: 2H5M_A 2Q44_A 1XMT_A 2Q4Y_A 2IL4_A 2EVN_A 1R57_A.
Probab=31.71 E-value=50 Score=22.29 Aligned_cols=32 Identities=6% Similarity=-0.040 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHhCCCCEEEEeCCCcccccchHHHHHHHH
Q psy12309 11 FWIFGKPTYNVALQKKWPLYLSTKNTILKKYDGHFKDIFQE 51 (152)
Q Consensus 11 ~eRiar~AF~~A~~r~~~Vt~v~KaNvl~~~dglf~~v~~e 51 (152)
...+++.|+++|++++.+|. + ++..-+..+++
T Consensus 40 a~~L~~~~l~~a~~~~~kv~--------p-~C~y~~~~~~~ 71 (78)
T PF14542_consen 40 AKKLVEAALDYARENGLKVV--------P-TCSYVAKYFRR 71 (78)
T ss_dssp HHHHHHHHHHHHHHTT-EEE--------E-TSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCEEE--------E-ECHHHHHHHHh
Confidence 56799999999999998776 3 34455665554
No 68
>KOG1502|consensus
Probab=30.97 E-value=2.8e+02 Score=24.25 Aligned_cols=76 Identities=8% Similarity=0.215 Sum_probs=50.8
Q ss_pred HHHH-HHHHHHHhCCCCEEEEeCCCcc--------cccchHHHHHHHHHHHhhcccccccCCeEEeeeeHHHHHHHHH--
Q psy12309 13 IFGK-PTYNVALQKKWPLYLSTKNTIL--------KKYDGHFKDIFQEVYEKNYKSQFEQAKIWYEHRLIDDMVAQAL-- 81 (152)
Q Consensus 13 Riar-~AF~~A~~r~~~Vt~v~KaNvl--------~~~dglf~~v~~eva~~~yp~~f~~~~I~~~~~~iD~~~~~lv-- 81 (152)
-+|+ .|+++|.+++..++++.-.-|+ ..+--.+.+.+...+ +.|| +.++-...||+.+.-.+
T Consensus 169 ~lAEkaAw~fa~e~~~~lv~inP~lV~GP~l~~~l~~s~~~~l~~i~G~~-~~~~------n~~~~~VdVrDVA~AHv~a 241 (327)
T KOG1502|consen 169 TLAEKAAWEFAKENGLDLVTINPGLVFGPGLQPSLNSSLNALLKLIKGLA-ETYP------NFWLAFVDVRDVALAHVLA 241 (327)
T ss_pred HHHHHHHHHHHHhCCccEEEecCCceECCCcccccchhHHHHHHHHhccc-ccCC------CCceeeEeHHHHHHHHHHH
Confidence 3443 4699999988776655544432 223446677777765 7788 77777899999884433
Q ss_pred -hCC---CCeEEEecCCc
Q psy12309 82 -KGN---GGFVWACKNYD 95 (152)
Q Consensus 82 -~~P---~~fViv~~Nl~ 95 (152)
.+| ++|.++.++++
T Consensus 242 ~E~~~a~GRyic~~~~~~ 259 (327)
T KOG1502|consen 242 LEKPSAKGRYICVGEVVS 259 (327)
T ss_pred HcCcccCceEEEecCccc
Confidence 345 56688888888
No 69
>COG1533 SplB DNA repair photolyase [DNA replication, recombination, and repair]
Probab=30.69 E-value=85 Score=26.81 Aligned_cols=34 Identities=15% Similarity=0.342 Sum_probs=29.3
Q ss_pred ccchHHHHHHHHHHHHHHHhCCCCEEEEeCCCcc
Q psy12309 5 SRPESTFWIFGKPTYNVALQKKWPLYLSTKNTIL 38 (152)
Q Consensus 5 ~~t~~~~eRiar~AF~~A~~r~~~Vt~v~KaNvl 38 (152)
|...+...++.|...+...+++-+|.++||+...
T Consensus 95 yqp~E~~~~ltR~ilei~~~~~~~v~I~TKS~lv 128 (297)
T COG1533 95 YQPIEKEYRLTRKILEILLKYGFPVSIVTKSALV 128 (297)
T ss_pred CCcchHHHHHHHHHHHHHHHcCCcEEEEECCcch
Confidence 3455788999999999999998899999999853
No 70
>PF07820 TraC: TraC-like protein; InterPro: IPR012930 The members of this family are sequences that are similar to TraC (Q84HT8 from SWISSPROT) from Rhizobium etli. The gene encoding this protein is one of a group of genes found on plasmid p42a of Rhizobium etli (strain CFN 42/ATCC 51251) that are thought to be involved in the process of plasmid self-transmission. Mobilisation of plasmid p42a is of importance as it is required for transfer of plasmid p42d, the symbiotic plasmid which carries most of the genes required for nodulation and nitrogen fixation by this symbiotic bacterium. The predicted protein products of p42a are similar to known transfer proteins of Agrobacterium tumefaciens plasmid pTiC58 []. ; GO: 0000746 conjugation
Probab=28.62 E-value=92 Score=22.51 Aligned_cols=37 Identities=14% Similarity=0.249 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHhCCCCEEEEeCCCcccccchHHHHHHHHHHHhhcc
Q psy12309 9 STFWIFGKPTYNVALQKKWPLYLSTKNTILKKYDGHFKDIFQEVYEKNYK 58 (152)
Q Consensus 9 ~~~eRiar~AF~~A~~r~~~Vt~v~KaNvl~~~dglf~~v~~eva~~~yp 58 (152)
...|||.|.|.+ -| +. + |..+|.-|+.+|++|+ .+|.
T Consensus 24 keaERigr~AlK----aG--L~-----e-ieI~d~eL~~~FeeIa-~RFr 60 (92)
T PF07820_consen 24 KEAERIGRIALK----AG--LG-----E-IEISDAELQAAFEEIA-ARFR 60 (92)
T ss_pred HHHHHHHHHHHH----cc--cc-----c-ccCCHHHHHHHHHHHH-HHHh
Confidence 456788777643 33 11 2 4457889999999998 7776
No 71
>PF07993 NAD_binding_4: Male sterility protein; InterPro: IPR013120 This family represents the C-terminal NAD-binding region of the male sterility protein from Arabidopsis and Drosophila. A sequence-related jojoba acyl CoA reductase is also included.; PDB: 4DQV_A.
Probab=28.17 E-value=2.5e+02 Score=22.27 Aligned_cols=73 Identities=8% Similarity=-0.072 Sum_probs=34.7
Q ss_pred chHHHHHHHHHHHHHHHhC-CCCEEEEeCCCccc--------ccchHHHHHHHHHHHhhcccccccCCeEEeeeeHHHHH
Q psy12309 7 PESTFWIFGKPTYNVALQK-KWPLYLSTKNTILK--------KYDGHFKDIFQEVYEKNYKSQFEQAKIWYEHRLIDDMV 77 (152)
Q Consensus 7 t~~~~eRiar~AF~~A~~r-~~~Vt~v~KaNvl~--------~~dglf~~v~~eva~~~yp~~f~~~~I~~~~~~iD~~~ 77 (152)
....++.++|.-.+-|.++ +.+++++-=++|.- ..+..|+-+..-+....+|......+..++-.-||.++
T Consensus 167 gY~~SK~~aE~~l~~a~~~~g~p~~I~Rp~~i~g~~~~G~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~vPVD~va 246 (249)
T PF07993_consen 167 GYEQSKWVAERLLREAAQRHGLPVTIYRPGIIVGDSRTGWWNSDDFFPYLLRSCIALGAFPDLPGDPDARLDLVPVDYVA 246 (249)
T ss_dssp -HHHHHHHHHHHHHHHHHHH---EEEEEE-EEE-SSSSS---TTBHHHHHHHHHHHH-EEES-SB---TT--EEEHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhcCCceEEEEecCcccccCCCceeeccchHHHHHHHHHHcCCcccccCCCCceEeEECHHHHH
Confidence 3444555555555555554 55665555444443 34435555555555456776666555668888899876
Q ss_pred HH
Q psy12309 78 AQ 79 (152)
Q Consensus 78 ~~ 79 (152)
.-
T Consensus 247 ~a 248 (249)
T PF07993_consen 247 RA 248 (249)
T ss_dssp HH
T ss_pred hh
Confidence 43
No 72
>COG4862 MecA Negative regulator of genetic competence, sporulation and motility [Posttranslational modification, protein turnover, chaperones / Signal transduction mechanisms / Cell motility and secretion]
Probab=27.35 E-value=84 Score=26.18 Aligned_cols=54 Identities=20% Similarity=0.410 Sum_probs=39.7
Q ss_pred CcccccchHHHHHHHHHHHhhcccccccCC-eEEeeeeHHHHHHHHHhCCCCe-EEEec-CCchhhhhhhh
Q psy12309 36 TILKKYDGHFKDIFQEVYEKNYKSQFEQAK-IWYEHRLIDDMVAQALKGNGGF-VWACK-NYDGDVQSDIV 103 (152)
Q Consensus 36 Nvl~~~dglf~~v~~eva~~~yp~~f~~~~-I~~~~~~iD~~~~~lv~~P~~f-Viv~~-Nl~GDIlSDla 103 (152)
|.-| +..+|++++.|+ +.|+.|...| ++++-+ .-|.+. |+|+. ++-|++.+|..
T Consensus 33 n~ek-~EE~F~~mMdEl---~~ee~F~~~GpL~iqV~----------al~~GleviVTK~~i~~~~~~d~~ 89 (224)
T COG4862 33 NREK-TEELFYEMMDEL---NLEEDFKDEGPLWIQVQ----------ALPQGLEVIVTKSKIEGEGPDDLD 89 (224)
T ss_pred chHH-HHHHHHHHHHhc---CCccccccCCceEEEEE----------EcCCceEEEEEhhhhcCccccchh
Confidence 5444 788999999985 4677887666 554432 357888 99998 88888877774
No 73
>PF03928 DUF336: Domain of unknown function (DUF336); InterPro: IPR005624 This entry contains uncharacterised proteins, including GlcG P45504 from SWISSPROT. The alignment contains many conserved motifs that are suggestive of cofactor binding and enzymatic activity.; PDB: 2A2L_D 3FPW_A 3FPV_E.
Probab=27.18 E-value=91 Score=22.84 Aligned_cols=32 Identities=16% Similarity=0.271 Sum_probs=24.4
Q ss_pred ccchHHHHHHHHHHHHHHHhCCCC--EEEEeCCC
Q psy12309 5 SRPESTFWIFGKPTYNVALQKKWP--LYLSTKNT 36 (152)
Q Consensus 5 ~~t~~~~eRiar~AF~~A~~r~~~--Vt~v~KaN 36 (152)
..|.+..++++..|.+.|++++.+ |.++|..-
T Consensus 2 ~l~~~~A~~l~~~a~~~a~~~g~~v~iaVvd~~G 35 (132)
T PF03928_consen 2 SLTLEDAWKLGDAAVEEARERGLPVSIAVVDAGG 35 (132)
T ss_dssp EE-HHHHHHHHHHHHHHHHHTT---EEEEEETTS
T ss_pred CcCHHHHHHHHHHHHHHHHHhCCCeEEEEEECCC
Confidence 357888999999999999999864 77777654
No 74
>PRK09653 eutD phosphotransacetylase; Reviewed
Probab=26.28 E-value=4.1e+02 Score=22.66 Aligned_cols=95 Identities=12% Similarity=0.049 Sum_probs=55.5
Q ss_pred chHHHHHHHHHHHHHHHhCCC--CEEE---EeCCCc-ccccchHHHHHHHHHHHhhcccccccCCeEEe-eeeHHHHHHH
Q psy12309 7 PESTFWIFGKPTYNVALQKKW--PLYL---STKNTI-LKKYDGHFKDIFQEVYEKNYKSQFEQAKIWYE-HRLIDDMVAQ 79 (152)
Q Consensus 7 t~~~~eRiar~AF~~A~~r~~--~Vt~---v~KaNv-l~~~dglf~~v~~eva~~~yp~~f~~~~I~~~-~~~iD~~~~~ 79 (152)
|.+....|+..|-++|+.-|. ||-+ ++|.+- ++ +...-++..+-. ++++| ++.++ ++-.|++.-.
T Consensus 173 ~~e~l~~ia~~a~~~ar~lG~~PkVAlLs~s~~Gs~~~~-~~~~~~ea~~ll-~~~~~------~~~vdGel~~D~A~~~ 244 (324)
T PRK09653 173 TAEQLAEIAINSAETAKAFGIDPKVAMLSFSTKGSAKGP-EVDKVQEATEIA-KELAP------DLKIDGELQFDAAFVP 244 (324)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCeEEEEeccccCCCCCC-cHHHHHHHHHHH-HhhCC------CCeEEecchHHHhCCH
Confidence 445566678888888886554 4433 344442 33 334566666544 56777 66666 3445665311
Q ss_pred -H--HhCC-----CCe-EEEecCCc-hhhhhhhhhhhcCC
Q psy12309 80 -A--LKGN-----GGF-VWACKNYD-GDVQSDIVAQGYGS 109 (152)
Q Consensus 80 -l--v~~P-----~~f-Viv~~Nl~-GDIlSDlaa~l~Gg 109 (152)
+ .+-| ++- |+|.||+. |+|+--+.-.+.|+
T Consensus 245 ~~~~~k~~~s~v~G~AnvLi~P~l~agNi~yK~l~~~~~~ 284 (324)
T PRK09653 245 EVAAKKAPGSPVAGKANVFVFPSLEAGNIGYKIAQRLGGF 284 (324)
T ss_pred HHHHhhCCCCccCCcCCEEEcCChHHhHHHHHHHHHhcCC
Confidence 1 2223 222 99999997 78877766655444
No 75
>KOG2244|consensus
Probab=26.02 E-value=2.4e+02 Score=27.11 Aligned_cols=93 Identities=18% Similarity=0.292 Sum_probs=60.6
Q ss_pred HHHHHHHHHHhCCCCEEEEeCC------CcccccchHHHHHHHHHHHhhcccccccCCeEEeee---eHHHHHHHHHhC-
Q psy12309 14 FGKPTYNVALQKKWPLYLSTKN------TILKKYDGHFKDIFQEVYEKNYKSQFEQAKIWYEHR---LIDDMVAQALKG- 83 (152)
Q Consensus 14 iar~AF~~A~~r~~~Vt~v~Ka------Nvl~~~dglf~~v~~eva~~~yp~~f~~~~I~~~~~---~iD~~~~~lv~~- 83 (152)
+-..||+-|+..++++.+.+-. .+|+.-+ +--+...++..++|- .|+++.+ -||-..|+.|.-
T Consensus 100 wgqeaf~kar~enkpifLsvgystchwchvmekes-feneet~~ilnenfv------~ikVDREERPDVDK~YM~Fv~as 172 (786)
T KOG2244|consen 100 WGQEAFNKARAENKPIFLSVGYSTCHWCHVMEKES-FENEETGEILNENFV------KIKVDREERPDVDKLYMAFVVAS 172 (786)
T ss_pred chHHHHHHHHhcCCCEEEEcccccchheeeeeccc-ccCHHHHHHHhhhhh------hhccChhhcCchHHHHHHHHHhc
Confidence 4567999999999887665433 3555322 222222233335655 6666533 689988887763
Q ss_pred --CCCe---EEEecCCchhhhhhhhhhhcCCCccccccccCCCC
Q psy12309 84 --NGGF---VWACKNYDGDVQSDIVAQGYGSLGLMTSILMCPDG 122 (152)
Q Consensus 84 --P~~f---Viv~~Nl~GDIlSDlaa~l~GglGl~psanig~~~ 122 (152)
-+++ |+++|||- -++||-=+-|--|+|--|
T Consensus 173 sg~GGWPmsV~LTPdL~---------PlvgGTYFPP~d~~g~~g 207 (786)
T KOG2244|consen 173 SGGGGWPMSVFLTPDLK---------PLVGGTYFPPNDNYGRPG 207 (786)
T ss_pred cCCCCCceeEEeCCCcc---------cccCCcccCCCCCCCCcc
Confidence 3455 99999986 678888788888877443
No 76
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=25.99 E-value=1.9e+02 Score=20.93 Aligned_cols=75 Identities=13% Similarity=0.113 Sum_probs=42.9
Q ss_pred cchHHHHHHHHHHHHHHHhCCCCEEEEeCCCcccccchHHHHHHHHHHHhhcccccccCCeEEeeeeHHHHHHHHHhCCC
Q psy12309 6 RPESTFWIFGKPTYNVALQKKWPLYLSTKNTILKKYDGHFKDIFQEVYEKNYKSQFEQAKIWYEHRLIDDMVAQALKGNG 85 (152)
Q Consensus 6 ~t~~~~eRiar~AF~~A~~r~~~Vt~v~KaNvl~~~dglf~~v~~eva~~~yp~~f~~~~I~~~~~~iD~~~~~lv~~P~ 85 (152)
.....++++++++-+.+.+++-.+.+++=.+. .. .+|......- ..+++ -++.. ...+..-.
T Consensus 11 r~~~~t~~l~~~~~~~l~~~g~e~~~i~l~~~-~~--p~~~~~~~~~--~~~~d------------~~~~~-~~~l~~aD 72 (152)
T PF03358_consen 11 RKNSNTRKLAEAVAEQLEEAGAEVEVIDLADY-PL--PCCDGDFECP--CYIPD------------DVQEL-YDKLKEAD 72 (152)
T ss_dssp STTSHHHHHHHHHHHHHHHTTEEEEEEECTTS-HC--HHHHHHHHHT--GCTSH------------HHHHH-HHHHHHSS
T ss_pred CCCCHHHHHHHHHHHHHHHcCCEEEEEecccc-ch--hhcccccccc--cCCcH------------HHHHH-HhceecCC
Confidence 34577899999999999888767777764443 11 1222111100 11121 11222 34445556
Q ss_pred CeEEEecCCchhh
Q psy12309 86 GFVWACKNYDGDV 98 (152)
Q Consensus 86 ~fViv~~Nl~GDI 98 (152)
.+|+++|.++|.+
T Consensus 73 ~iI~~sP~y~~~~ 85 (152)
T PF03358_consen 73 GIIFASPVYNGSV 85 (152)
T ss_dssp EEEEEEEEBTTBE
T ss_pred eEEEeecEEcCcC
Confidence 6699999999987
No 77
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=23.93 E-value=3.7e+02 Score=25.98 Aligned_cols=74 Identities=19% Similarity=0.393 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHhCCCCEEEEe------CCCcccccchHH-HHHHHHHHHhhcccccccCCeEEeee---eHHHHHH---H
Q psy12309 13 IFGKPTYNVALQKKWPLYLST------KNTILKKYDGHF-KDIFQEVYEKNYKSQFEQAKIWYEHR---LIDDMVA---Q 79 (152)
Q Consensus 13 Riar~AF~~A~~r~~~Vt~v~------KaNvl~~~dglf-~~v~~eva~~~yp~~f~~~~I~~~~~---~iD~~~~---~ 79 (152)
-+-+.||+-|++++++|.+.- =-+||.+ .-| -+-+.++-.+.|= -|+++.. -||+..| |
T Consensus 30 pW~~eAf~~A~~edkPIflSIGys~CHWChVM~~--ESf~d~eiA~~lN~~FV------~IKVDREERPDvD~~Ym~~~q 101 (667)
T COG1331 30 PWGEEAFAKAKEEDKPILLSIGYSTCHWCHVMAH--ESFEDPEIAAILNENFV------PVKVDREERPDVDSLYMNASQ 101 (667)
T ss_pred ccCHHHHHHHHHhCCCEEEEeccccccchHHHhh--hcCCCHHHHHHHHhCce------eeeEChhhccCHHHHHHHHHH
Confidence 345779999999999866532 2223321 011 0111122222333 5777633 6888776 5
Q ss_pred HHhCCCCe---EEEecCC
Q psy12309 80 ALKGNGGF---VWACKNY 94 (152)
Q Consensus 80 lv~~P~~f---Viv~~Nl 94 (152)
+++-.+++ |++||+.
T Consensus 102 ~~tG~GGWPLtVfLTPd~ 119 (667)
T COG1331 102 AITGQGGWPLTVFLTPDG 119 (667)
T ss_pred HhccCCCCceeEEECCCC
Confidence 55566677 9999863
No 78
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=23.84 E-value=1.1e+02 Score=21.73 Aligned_cols=26 Identities=8% Similarity=-0.087 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHhCCCCEEEEeC
Q psy12309 9 STFWIFGKPTYNVALQKKWPLYLSTK 34 (152)
Q Consensus 9 ~~~eRiar~AF~~A~~r~~~Vt~v~K 34 (152)
+.+++.+++|.++|+..+-+|+++|=
T Consensus 14 ~~s~~al~~a~~la~~~~a~l~ll~v 39 (144)
T PRK15118 14 PESKVLVEKAVSMARPYNAKVSLIHV 39 (144)
T ss_pred hhHHHHHHHHHHHHHhhCCEEEEEEE
Confidence 35678889999999877778888774
No 79
>KOG0174|consensus
Probab=23.71 E-value=1.2e+02 Score=25.02 Aligned_cols=34 Identities=15% Similarity=0.125 Sum_probs=27.5
Q ss_pred cchHHHHHHHHHHHHHHHhCCC------CEEEEeCCCccc
Q psy12309 6 RPESTFWIFGKPTYNVALQKKW------PLYLSTKNTILK 39 (152)
Q Consensus 6 ~t~~~~eRiar~AF~~A~~r~~------~Vt~v~KaNvl~ 39 (152)
.|.++|+|+.+.|..+|..|.. ++.++.|+-|-+
T Consensus 166 Mt~EE~~~fvk~Av~lAi~rDGsSGGviR~~~I~~~Gver 205 (224)
T KOG0174|consen 166 MTLEECVRFVKNAVSLAIERDGSSGGVIRLVIINKAGVER 205 (224)
T ss_pred CCHHHHHHHHHHHHHHHHhccCCCCCEEEEEEEccCCceE
Confidence 4789999999999999999843 577777777654
No 80
>COG3689 Predicted membrane protein [Function unknown]
Probab=23.58 E-value=66 Score=27.50 Aligned_cols=32 Identities=31% Similarity=0.620 Sum_probs=26.5
Q ss_pred cccccchHHHHHHHHHHHhhcccccccCCeEEee
Q psy12309 37 ILKKYDGHFKDIFQEVYEKNYKSQFEQAKIWYEH 70 (152)
Q Consensus 37 vl~~~dglf~~v~~eva~~~yp~~f~~~~I~~~~ 70 (152)
=.+.||.-|.+++++++ .||++|.-++|++.-
T Consensus 151 pi~~Tdenyl~~m~~iy--~~pdef~Gk~Ie~tG 182 (271)
T COG3689 151 PIKRTDENYLDTMEEIY--NYPDEFAGKKIEFTG 182 (271)
T ss_pred ceeeehhHHHHHHHHHh--cCchhhcCceEEEEE
Confidence 34568899999999886 799999988888864
No 81
>PF00175 NAD_binding_1: Oxidoreductase NAD-binding domain ; InterPro: IPR001433 Bacterial ferredoxin-NADP+ reductase may be bound to the thylakoid membrane or anchored to the thylakoid-bound phycobilisomes. Chloroplast ferredoxin-NADP+ reductase (1.18.1.2 from EC) may play a key role in regulating the relative amounts of cyclic and non-cyclic electron flow to meet the demands of the plant for ATP and reducing power. It is involved in the final step in the linear photosynthetic electron transport chain and has also been implicated in cyclic electron flow around photosystem I where its role would be to return electrons from ferredoxin to the cytochrome B-F complex. This domain is present in a variety of proteins that include, bacterial flavohemoprotein, mammalian NADH-cytochrome b5 reductase, eukaryotic NADPH-cytochrome P450 reductase, nitrate reductase from plants, nitric-oxide synthase, bacterial vanillate demethylase, as well as others.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1UMK_A 1CNE_A 2CND_A 1CNF_A 4FK8_A 4F7D_A 2XNJ_B 1FDR_A 1JB9_A 3LVB_A ....
Probab=23.17 E-value=2.4e+02 Score=18.85 Aligned_cols=74 Identities=14% Similarity=0.144 Sum_probs=39.3
Q ss_pred HHHHHHHHHHhCCCCEEEEeCCCcccccchHHHHHHHHHHHhhccccc-------ccCCeEEeeeeHHHHH-HHHHh---
Q psy12309 14 FGKPTYNVALQKKWPLYLSTKNTILKKYDGHFKDIFQEVYEKNYKSQF-------EQAKIWYEHRLIDDMV-AQALK--- 82 (152)
Q Consensus 14 iar~AF~~A~~r~~~Vt~v~KaNvl~~~dglf~~v~~eva~~~yp~~f-------~~~~I~~~~~~iD~~~-~~lv~--- 82 (152)
++++..+. +..++|++++=..- ..|-+|++.+++.. +++|.+| .+.+.....-+|+... ..++.
T Consensus 14 ~l~~~~~~--~~~~~v~l~~~~r~--~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~ 88 (109)
T PF00175_consen 14 MLRYLLER--NDNRKVTLFYGART--PEDLLFRDELEALA-QEYPNRFHVVYVSSPDDGWDGFKGRVTDLLLEDLLPEKI 88 (109)
T ss_dssp HHHHHHHH--TCTSEEEEEEEESS--GGGSTTHHHHHHHH-HHSTTCEEEEEETTTTSSTTSEESSHHHHHHHHHHHHHH
T ss_pred HHHHHHHh--CCCCCEEEEEEEcc--cccccchhHHHHHH-hhcccccccccccccccccCCceeehhHHHHHhhccccc
Confidence 44444333 33456777763322 24678899999986 7888421 1111112233444443 55555
Q ss_pred CCCCe-EEEec
Q psy12309 83 GNGGF-VWACK 92 (152)
Q Consensus 83 ~P~~f-Viv~~ 92 (152)
++... |++|-
T Consensus 89 ~~~~~~v~iCG 99 (109)
T PF00175_consen 89 DPDDTHVYICG 99 (109)
T ss_dssp CTTTEEEEEEE
T ss_pred CCCCCEEEEEC
Confidence 45555 77773
No 82
>KOG4236|consensus
Probab=23.14 E-value=1.8e+02 Score=28.02 Aligned_cols=67 Identities=10% Similarity=0.072 Sum_probs=49.5
Q ss_pred EEEEeCCCcccccchHHHHHHHHHHHhhcccccccCCeEEeeeeHHHHHHHHHhCCCCeEEEecCCchhhhhhhhhhhcC
Q psy12309 29 LYLSTKNTILKKYDGHFKDIFQEVYEKNYKSQFEQAKIWYEHRLIDDMVAQALKGNGGFVWACKNYDGDVQSDIVAQGYG 108 (152)
Q Consensus 29 Vt~v~KaNvl~~~dglf~~v~~eva~~~yp~~f~~~~I~~~~~~iD~~~~~lv~~P~~fViv~~Nl~GDIlSDlaa~l~G 108 (152)
|-+++|--.-+..+...|..+.=.-+-.+| ||---+ .|...|++..+|++-|.||+|--+.++=-|
T Consensus 594 vKvIdKlrFp~kqesqlR~EVaILq~l~HP------GiV~le--------~M~ET~ervFVVMEKl~GDMLEMILSsEkg 659 (888)
T KOG4236|consen 594 VKVIDKLRFPTKQESQLRNEVAILQNLHHP------GIVNLE--------CMFETPERVFVVMEKLHGDMLEMILSSEKG 659 (888)
T ss_pred eeeeecccCCCchHHHHHHHHHHHHhcCCC------CeeEEE--------EeecCCceEEEEehhhcchHHHHHHHhhcc
Confidence 888999988776777777766544345788 865433 567889999889999999998777665544
Q ss_pred C
Q psy12309 109 S 109 (152)
Q Consensus 109 g 109 (152)
-
T Consensus 660 R 660 (888)
T KOG4236|consen 660 R 660 (888)
T ss_pred c
Confidence 3
No 83
>COG4782 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.06 E-value=1.2e+02 Score=27.14 Aligned_cols=105 Identities=16% Similarity=0.214 Sum_probs=59.1
Q ss_pred CccccchHHHHHHHHHHHHHHHhC---CC---CEEEEeCCCcccccchHH--HHHHHHHHHhhcccccccCCeEEeeeeH
Q psy12309 2 FADSRPESTFWIFGKPTYNVALQK---KW---PLYLSTKNTILKKYDGHF--KDIFQEVYEKNYKSQFEQAKIWYEHRLI 73 (152)
Q Consensus 2 ~~~~~t~~~~eRiar~AF~~A~~r---~~---~Vt~v~KaNvl~~~dglf--~~v~~eva~~~yp~~f~~~~I~~~~~~i 73 (152)
+|+-++|+++ +..|-|++-.+++ .+ +|+ |+.++.|-| .+..++++-+.+. .
T Consensus 161 ~~Yn~DreS~-~~Sr~aLe~~lr~La~~~~~~~I~------ilAHSMGtwl~~e~LrQLai~~~~------~-------- 219 (377)
T COG4782 161 LGYNYDREST-NYSRPALERLLRYLATDKPVKRIY------LLAHSMGTWLLMEALRQLAIRADR------P-------- 219 (377)
T ss_pred eecccchhhh-hhhHHHHHHHHHHHHhCCCCceEE------EEEecchHHHHHHHHHHHhccCCc------c--------
Confidence 3455555544 4777787776653 22 455 477888888 4566666533222 1
Q ss_pred HHHHHHHHhCCCCe---EEEecCCchhhhhhhhhhhcCCCccccccccCCC-CCeEEEecCCCCcccc
Q psy12309 74 DDMVAQALKGNGGF---VWACKNYDGDVQSDIVAQGYGSLGLMTSILMCPD-GKTIESEAAHGTVTRH 137 (152)
Q Consensus 74 D~~~~~lv~~P~~f---Viv~~Nl~GDIlSDlaa~l~GglGl~psanig~~-~~~a~fEp~HGsApdi 137 (152)
-|..| |+.+|-.+=|..+..-.. +|.++.-=..-++.| +-..+--+.+|..|++
T Consensus 220 ---------l~~ki~nViLAaPDiD~DVF~~Q~~~-mg~~~~~ft~~~s~dDral~~s~~i~g~~~Rl 277 (377)
T COG4782 220 ---------LPAKIKNVILAAPDIDVDVFSSQIAA-MGKPDPPFTLFVSRDDRALALSRRISGDVPRL 277 (377)
T ss_pred ---------hhhhhhheEeeCCCCChhhHHHHHHH-hcCCCCCeeEEecccchhhccccccccCCccc
Confidence 23444 677777777777766555 677654333333322 1124555666666654
No 84
>KOG1638|consensus
Probab=22.94 E-value=61 Score=27.47 Aligned_cols=34 Identities=24% Similarity=0.232 Sum_probs=22.2
Q ss_pred eeHHHHHHHHHhC-------CCCe---EEEecCCchhhhhhhhh
Q psy12309 71 RLIDDMVAQALKG-------NGGF---VWACKNYDGDVQSDIVA 104 (152)
Q Consensus 71 ~~iD~~~~~lv~~-------P~~f---Viv~~Nl~GDIlSDlaa 104 (152)
.+=|...++|=++ |.+. .|-|||+||.|+-=++-
T Consensus 164 ~~sD~iL~~LRk~~~~~YkIP~GglFeyVsCPNYfgEiieW~Gy 207 (257)
T KOG1638|consen 164 IYSDNILRTLRKPGGKGYKIPRGGLFEYVSCPNYFGEIIEWIGY 207 (257)
T ss_pred hhhHHHHHHhhcCCCCceecCCCceEEEeecchHHHHHHHHHHH
Confidence 3345555555443 5554 99999999999865543
No 85
>PRK13695 putative NTPase; Provisional
Probab=22.08 E-value=3.4e+02 Score=20.22 Aligned_cols=79 Identities=16% Similarity=0.132 Sum_probs=46.0
Q ss_pred hHHHHHHHHHHHHHHHhCCCCEEEEeCCCcccccchHHHHHHHHHHHhhcccccccCCeEEee-eeHHHHHHHHHhCCCC
Q psy12309 8 ESTFWIFGKPTYNVALQKKWPLYLSTKNTILKKYDGHFKDIFQEVYEKNYKSQFEQAKIWYEH-RLIDDMVAQALKGNGG 86 (152)
Q Consensus 8 ~~~~eRiar~AF~~A~~r~~~Vt~v~KaNvl~~~dglf~~v~~eva~~~yp~~f~~~~I~~~~-~~iD~~~~~lv~~P~~ 86 (152)
.++.+++.......+.+ +.+|.++|..-.+..-+.-|++.+.++. + ++.. =|-+-| ..+...+-.+...|..
T Consensus 79 lsgle~~~~~l~~~~l~-~~~~lllDE~~~~e~~~~~~~~~l~~~~-~-~~~~----~i~v~h~~~~~~~~~~i~~~~~~ 151 (174)
T PRK13695 79 LEDLERIGIPALERALE-EADVIIIDEIGKMELKSPKFVKAVEEVL-D-SEKP----VIATLHRRSVHPFVQEIKSRPGG 151 (174)
T ss_pred hHHHHHHHHHHHHhccC-CCCEEEEECCCcchhhhHHHHHHHHHHH-h-CCCe----EEEEECchhhHHHHHHHhccCCc
Confidence 34455554444443332 4479999975444444567888888876 2 3310 233333 3445567888999998
Q ss_pred e-EEEecC
Q psy12309 87 F-VWACKN 93 (152)
Q Consensus 87 f-Viv~~N 93 (152)
. +-+|+.
T Consensus 152 ~i~~~~~~ 159 (174)
T PRK13695 152 RVYELTPE 159 (174)
T ss_pred EEEEEcch
Confidence 8 555553
No 86
>PRK10116 universal stress protein UspC; Provisional
Probab=21.51 E-value=1.3e+02 Score=21.29 Aligned_cols=27 Identities=11% Similarity=-0.112 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHhCCCCEEEEeCC
Q psy12309 9 STFWIFGKPTYNVALQKKWPLYLSTKN 35 (152)
Q Consensus 9 ~~~eRiar~AF~~A~~r~~~Vt~v~Ka 35 (152)
+..++..++|.++|++.+-+|+++|=.
T Consensus 14 ~~s~~al~~A~~lA~~~~a~l~ll~v~ 40 (142)
T PRK10116 14 PESQQLLAKAVSIARPVNGKISLITLA 40 (142)
T ss_pred cchHHHHHHHHHHHHHhCCEEEEEEEc
Confidence 456788899999998877777777543
No 87
>PRK02487 hypothetical protein; Provisional
Probab=21.43 E-value=1.8e+02 Score=22.37 Aligned_cols=34 Identities=12% Similarity=0.250 Sum_probs=26.2
Q ss_pred cccchHHHHHHHHHHHHHHHhCCCC--EEEEeCCCc
Q psy12309 4 DSRPESTFWIFGKPTYNVALQKKWP--LYLSTKNTI 37 (152)
Q Consensus 4 ~~~t~~~~eRiar~AF~~A~~r~~~--Vt~v~KaNv 37 (152)
.+.|.+...+++..|.+.|++++.+ |.+++-.|+
T Consensus 21 ~~l~~~~A~~l~~~a~~~A~~~g~~v~IaVv~~G~~ 56 (163)
T PRK02487 21 PHFDNDDAWQLGSLLVELARERGLPIAIDITLNGQP 56 (163)
T ss_pred CCCCHHHHHHHHHHHHHHHHHcCCCEEEEEEECCcE
Confidence 4678889999999999999998876 444554443
No 88
>PRK00730 rnpA ribonuclease P; Reviewed
Probab=20.56 E-value=3.7e+02 Score=20.57 Aligned_cols=53 Identities=9% Similarity=0.163 Sum_probs=34.3
Q ss_pred ccchHHHHHHHHHHHHHHHhC--CCCEEEEeCCCcccccchHHHHHHHHHHHhhcc
Q psy12309 5 SRPESTFWIFGKPTYNVALQK--KWPLYLSTKNTILKKYDGHFKDIFQEVYEKNYK 58 (152)
Q Consensus 5 ~~t~~~~eRiar~AF~~A~~r--~~~Vt~v~KaNvl~~~dglf~~v~~eva~~~yp 58 (152)
-..|--+.|++|.+|+.-... +..+.++.|.++......|-.++...+. +.+|
T Consensus 59 AV~RNRiKR~lREafR~~~~~l~g~DiVviaR~~~~~~f~~L~~~l~~~~~-~~~~ 113 (138)
T PRK00730 59 AHQRNRFKRIVREAFRHVRHNLPGCQIVVSPKGNSQPDFLKLLQDFLQQIP-EALP 113 (138)
T ss_pred chhHHHHHHHHHHHHHHhhcccCCceEEEEeccccCCCHHHHHHHHHHHHH-HHhh
Confidence 345778999999999987543 3468888998876433444444444332 4455
No 89
>COG4837 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.18 E-value=1.3e+02 Score=22.18 Aligned_cols=23 Identities=13% Similarity=0.281 Sum_probs=16.3
Q ss_pred HHHHHHHHhhcccccccCCeEEeeeeHHH
Q psy12309 47 DIFQEVYEKNYKSQFEQAKIWYEHRLIDD 75 (152)
Q Consensus 47 ~v~~eva~~~yp~~f~~~~I~~~~~~iD~ 75 (152)
+|.+..-+..|| +..++.++||-
T Consensus 30 eWLeaalkRKyp------~~~F~~~YiDI 52 (106)
T COG4837 30 EWLEAALKRKYP------NQPFKYTYIDI 52 (106)
T ss_pred HHHHHHHhccCC------CCCcEEEEEEc
Confidence 444443357899 88888888886
Done!