RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12309
(152 letters)
>3us8_A Isocitrate dehydrogenase [NADP]; PSI-biology, structural genomics;
2.25A {Sinorhizobium meliloti}
Length = 427
Score = 162 bits (411), Expect = 3e-49
Identities = 93/126 (73%), Positives = 112/126 (88%)
Query: 14 FGKPTYNVALQKKWPLYLSTKNTILKKYDGHFKDIFQEVYEKNYKSQFEQAKIWYEHRLI 73
F + ++N LQ+K P+YLSTKNTILK YDG FKDIFQ+V+++ + +QF+ K+WYEHRLI
Sbjct: 213 FARASFNYGLQRKVPVYLSTKNTILKAYDGRFKDIFQKVFDEEFAAQFKAEKLWYEHRLI 272
Query: 74 DDMVAQALKGNGGFVWACKNYDGDVQSDIVAQGYGSLGLMTSILMCPDGKTIESEAAHGT 133
DDMVA ALK +GG+VWACKNYDGDVQSDIVAQG+GSLGLMTS+LM PDGKT+E+EAAHGT
Sbjct: 273 DDMVASALKWSGGYVWACKNYDGDVQSDIVAQGFGSLGLMTSVLMTPDGKTVEAEAAHGT 332
Query: 134 VTRHYR 139
VTRHYR
Sbjct: 333 VTRHYR 338
>1lwd_A Isocitrate dehydrogenase; tricarboxylic acid cycle, oxidoreductase,
NADP; HET: ICT; 1.85A {Sus scrofa} SCOP: c.77.1.1 PDB:
1t0l_A* 1t09_A* 3mas_B* 3map_A* 3mar_A* 3mas_A* 3inm_A*
2cmj_A* 2cmv_A*
Length = 413
Score = 161 bits (409), Expect = 4e-49
Identities = 99/126 (78%), Positives = 114/126 (90%)
Query: 14 FGKPTYNVALQKKWPLYLSTKNTILKKYDGHFKDIFQEVYEKNYKSQFEQAKIWYEHRLI 73
F + A+QKKWPLY+STKNTILK YDG FKDIFQE++EK+YK+ F++ KIWYEHRLI
Sbjct: 192 FAHSCFQYAIQKKWPLYMSTKNTILKAYDGRFKDIFQEIFEKHYKTDFDKYKIWYEHRLI 251
Query: 74 DDMVAQALKGNGGFVWACKNYDGDVQSDIVAQGYGSLGLMTSILMCPDGKTIESEAAHGT 133
DDMVAQ LK +GGFVWACKNYDGDVQSDI+AQG+GSLGLMTS+L+CPDGKTIE+EAAHGT
Sbjct: 252 DDMVAQVLKSSGGFVWACKNYDGDVQSDILAQGFGSLGLMTSVLVCPDGKTIEAEAAHGT 311
Query: 134 VTRHYR 139
VTRHYR
Sbjct: 312 VTRHYR 317
>2qfy_A Isocitrate dehydrogenase [NADP]; rossmann fold, oxidoreductase;
HET: AKG; 2.10A {Saccharomyces cerevisiae} PDB: 2qfw_A*
2qfx_A* 2qfv_A*
Length = 427
Score = 161 bits (409), Expect = 5e-49
Identities = 96/126 (76%), Positives = 106/126 (84%)
Query: 14 FGKPTYNVALQKKWPLYLSTKNTILKKYDGHFKDIFQEVYEKNYKSQFEQAKIWYEHRLI 73
F ++ +A+ KK L+LSTKNTILKKYDG FKDIFQEVYE YKS+FEQ I YEHRLI
Sbjct: 208 FAHSSFKLAIDKKLNLFLSTKNTILKKYDGRFKDIFQEVYEAQYKSKFEQLGIHYEHRLI 267
Query: 74 DDMVAQALKGNGGFVWACKNYDGDVQSDIVAQGYGSLGLMTSILMCPDGKTIESEAAHGT 133
DDMVAQ +K GGF+ A KNYDGDVQSDIVAQG+GSLGLMTSIL+ PDGKT ESEAAHGT
Sbjct: 268 DDMVAQMIKSKGGFIMALKNYDGDVQSDIVAQGFGSLGLMTSILVTPDGKTFESEAAHGT 327
Query: 134 VTRHYR 139
VTRHYR
Sbjct: 328 VTRHYR 333
>2uxq_A Isocitrate dehydrogenase native; psychrophilic, cold adaptation,
thermal stability, oxidoreductase; HET: SO4 PEG; 1.75A
{Desulfotalea psychrophila} PDB: 2uxr_A*
Length = 402
Score = 153 bits (388), Expect = 4e-46
Identities = 66/137 (48%), Positives = 91/137 (66%), Gaps = 2/137 (1%)
Query: 14 FGKPTYNVALQKKWPLYLSTKNTILKKYDGHFKDIFQEVYEKNYKSQFEQAKIWYEHRLI 73
F + + +L +K + +TK+TI K+YD FK IF+E++ + YK +F A I Y + LI
Sbjct: 189 FARACFEYSLDQKIDCWFATKDTISKQYDQRFKIIFEEIFAQEYKEKFAAAGIEYFYTLI 248
Query: 74 DDMVAQALKGNGGFVWACKNYDGDVQSDIVAQGYGSLGLMTSILMCPDGKTIESEAAHGT 133
DD+VA+ +K GG +WACKNYDGDV SD+VA +GSL +M+S+L+ P G E EAAHGT
Sbjct: 249 DDVVARMMKTEGGMLWACKNYDGDVMSDMVASAFGSLAMMSSVLVSPYG-YFEYEAAHGT 307
Query: 134 VTRHYR-FLGINDINTN 149
V RHY L +TN
Sbjct: 308 VQRHYYQHLKGERTSTN 324
>4aoy_A Isocitrate dehydrogenase [NADP]; oxidoreductase, temperature
adaptation, thermophilic, psychr NADP+ selectivity,
domain movements; 2.35A {Clostridium thermocellum} PDB:
4aou_A
Length = 402
Score = 144 bits (365), Expect = 1e-42
Identities = 73/126 (57%), Positives = 89/126 (70%), Gaps = 1/126 (0%)
Query: 14 FGKPTYNVALQKKWPLYLSTKNTILKKYDGHFKDIFQEVYEKNYKSQFEQAKIWYEHRLI 73
F + +N AL L+ STK+TI K YD FKDIFQE+YE YK +FE + Y + LI
Sbjct: 190 FARACFNYALDMNQDLWFSTKDTISKTYDHRFKDIFQEIYENEYKEKFEAKNLQYFYTLI 249
Query: 74 DDMVAQALKGNGGFVWACKNYDGDVQSDIVAQGYGSLGLMTSILMCPDGKTIESEAAHGT 133
DD VA+ ++ GG VWACKNYDGDV SD+VA +GSL +MTS+L+ PDGK E EAAHGT
Sbjct: 250 DDAVARIIRSEGGMVWACKNYDGDVMSDMVASAFGSLAMMTSVLVSPDGK-YEFEAAHGT 308
Query: 134 VTRHYR 139
VTRHY
Sbjct: 309 VTRHYY 314
>1zor_A Isocitrate dehydrogenase; wild type enzyme, CIS-proline,
thermostable, oxidoreductase; 2.24A {Thermotoga
maritima}
Length = 399
Score = 143 bits (361), Expect = 3e-42
Identities = 67/137 (48%), Positives = 92/137 (67%), Gaps = 3/137 (2%)
Query: 14 FGKPTYNVALQKKWPLYLSTKNTILKKYDGHFKDIFQEVYEKNYKSQFEQAKIWYEHRLI 73
F + N A+ +K ++ +TK+TI K Y +FKDIFQE +K + + E+A + Y + LI
Sbjct: 188 FAQSCINYAISEKVDIWFATKDTISKVYHAYFKDIFQEEVDKRKE-ELEKAGVNYRYMLI 246
Query: 74 DDMVAQALKGNGGFVWACKNYDGDVQSDIVAQGYGSLGLMTSILMCPDGKTIESEAAHGT 133
DD AQ L+ GG +WAC NY+GD+ SD++A G+GSLGLMTS+L+ PDG E EAAHGT
Sbjct: 247 DDAAAQILRSEGGMLWACMNYEGDIMSDMIASGFGSLGLMTSVLVSPDG-VYEFEAAHGT 305
Query: 134 VTRHYR-FLGINDINTN 149
V RHY +L +TN
Sbjct: 306 VRRHYYRYLKGEKTSTN 322
>3blx_A Isocitrate dehydrogenase [NAD] subunit 1; TCA cycle, oxidative
metabolism, allostery, decarboxylase, allosteric enzyme,
magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_A
3blv_A*
Length = 349
Score = 57.6 bits (140), Expect = 9e-11
Identities = 24/102 (23%), Positives = 38/102 (37%), Gaps = 8/102 (7%)
Query: 33 TKNTILKKYDGHFKDIFQEVYEKNYKSQFEQAKIWYEHRLIDDMVAQALKGNGGF-VWAC 91
K I+K DG F++I E+ +K Y I ++D+ QA+ F V
Sbjct: 182 HKANIMKLGDGLFRNIITEIGQKEYP------DIDVSSIIVDNASMQAVAKPHQFDVLVT 235
Query: 92 KNYDGDVQSDIVAQGYGSLGLMTSILMCPDGKTIESEAAHGT 133
+ G + +I A G GL+ D E +
Sbjct: 236 PSMYGTILGNIGAALIGGPGLVAGANFGRDYAVFEP-GSRHV 276
>1itw_A Isocitrate dehydrogenase; greece KEY motif, oxidoreductase; HET:
ICT; 1.95A {Azotobacter vinelandii} SCOP: c.77.1.2 PDB:
1j1w_A*
Length = 741
Score = 49.3 bits (117), Expect = 7e-08
Identities = 19/129 (14%), Positives = 41/129 (31%), Gaps = 21/129 (16%)
Query: 22 ALQKKWPLYLSTKNTILKKYDGHFKDIFQEVYEKNYKSQFEQAKIWYEHRLIDDMVAQAL 81
A P L H + +V + Y ++ + + + A
Sbjct: 477 ARATNTPAVFW-----LDPARAHDAQVIAKV--ERYLKDYDTSGLDIRILSPVE----AT 525
Query: 82 KGNGGFVWACKN---YDGDVQSDIVAQGYGSLGLMTS------ILMCPDGKTIESEAAHG 132
+ + + K+ G+V D + + + L TS + + G E+ A G
Sbjct: 526 RFSLARIREGKDTISVTGNVLRDYLTDLFPIMELGTSAKMLSIVPLMSGGGLFET-GAGG 584
Query: 133 TVTRHYRFL 141
+ +H +
Sbjct: 585 SAPKHVQQF 593
>2d1c_A Isocitrate dehydrogenase; structural genomics, NPPSFA, national
project protein structural and functional analyses; HET:
NAP CIT; 1.80A {Thermus thermophilus}
Length = 496
Score = 48.9 bits (117), Expect = 9e-08
Identities = 28/101 (27%), Positives = 45/101 (44%), Gaps = 10/101 (9%)
Query: 34 KNTILKKYDGHFKDIFQEVYEKNYKSQFEQAKIWYEHRLIDDMVAQALKGNGGF-VWACK 92
K+ I+K +G K F++V + Y I H ++D+ Q +K F V
Sbjct: 191 KSNIMKLAEGTLKRAFEQV-AQEYP------DIEAVHIIVDNAAHQLVKRPEQFEVIVTT 243
Query: 93 NYDGDVQSDIVAQGYGSLGLMTSILMCPDGKTIESEAAHGT 133
N +GD+ SD+ + G LG S + + EA HG+
Sbjct: 244 NMNGDILSDLTSGLIGGLGFAPSANIGNEVAIF--EAVHGS 282
>3blx_B Isocitrate dehydrogenase [NAD] subunit 2; TCA cycle, oxidative
metabolism, allostery, decarboxylase, allosteric enzyme,
magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_B*
3blv_B
Length = 354
Score = 48.4 bits (116), Expect = 1e-07
Identities = 31/105 (29%), Positives = 47/105 (44%), Gaps = 13/105 (12%)
Query: 33 TKNTILKKYDGHFKDIFQEVYEKNYKSQFEQAKIWYEHRLIDDMVAQALKGNGGF---VW 89
K+TI + DG F ++ +E+ K Y + E LID+ V + + + V
Sbjct: 188 HKSTIQRLADGLFVNVAKELS-KEYP------DLTLETELIDNSVLKVVTNPSAYTDAVS 240
Query: 90 ACKNYDGDVQSDIVAQ-GYGSLGLMTSILMCPDGKTIESEAAHGT 133
C N GD+ SD+ + GSLGL S + EA HG+
Sbjct: 241 VCPNLYGDILSDLNSGLSAGSLGLTPSANIGHKISIF--EAVHGS 283
>2e0c_A 409AA long hypothetical NADP-dependent isocitrate dehydrogenase;
homedimer, oxidoreductase; 2.00A {Sulfolobus tokodaii
str} PDB: 2dht_A 2e5m_A*
Length = 409
Score = 48.4 bits (116), Expect = 1e-07
Identities = 29/117 (24%), Positives = 46/117 (39%), Gaps = 24/117 (20%)
Query: 34 KNTILKKYDGHFKDIFQEVYEKNY-----------KSQFEQAKIWYEHRLIDDMVAQALK 82
K ++K +G F++ EV K Y + + +Q KI R+ D+M Q +
Sbjct: 223 KGNVMKYTEGAFREWAYEVALKEYRDFIVTEEEINQGKPDQGKIILNDRIADNMFQQIII 282
Query: 83 GNGGF-VWACKNYDGDVQSDIVAQGYGSLGLMTSILMCP-----DGKTIESEAAHGT 133
+ + N +GD SD G++G M D + EA HGT
Sbjct: 283 RPEEYDIILAPNVNGDYISDAAGALIGNIG------MLGGANIGDEGGM-FEAIHGT 332
>1wpw_A 3-isopropylmalate dehydrogenase; oxidoreductase; 2.80A {Sulfolobus
tokodaii} SCOP: c.77.1.1
Length = 336
Score = 48.0 bits (115), Expect = 2e-07
Identities = 25/102 (24%), Positives = 40/102 (39%), Gaps = 14/102 (13%)
Query: 34 KNTILKKYDGHFKDIFQEVYEKNYKSQFEQAKIWYEHRLIDDMVAQALKGNGGF-VWACK 92
K +++ DG F + + V + + Y +D A ++ F V +
Sbjct: 169 KANVMRITDGLFAEACRSVLKGK---------VEYSEMYVDAAAANLVRNPQMFDVIVTE 219
Query: 93 NYDGDVQSDIVAQGYGSLGLMTSILMCPDGKTIE-SEAAHGT 133
N GD+ SD +Q GSLG+ S + G E HG
Sbjct: 220 NVYGDILSDEASQIAGSLGIAPSANI---GDKKALFEPVHGA 258
>2iv0_A Isocitrate dehydrogenase; oxidoreductase, tricarboxylic acid cycle,
domain swapping, phosphorylation, aromatic cluster,
NADP; 2.5A {Archaeoglobus fulgidus}
Length = 412
Score = 48.1 bits (115), Expect = 2e-07
Identities = 32/120 (26%), Positives = 48/120 (40%), Gaps = 27/120 (22%)
Query: 34 KNTILKKYDGHFKDIFQEVYEKNY--------------KSQFEQAKIWYEHRLIDDMVAQ 79
K I+K +G F+D EV ++ + + + KI + R+ D+M Q
Sbjct: 223 KGNIMKYTEGAFRDWGYEVAKQEFGEYCITEDELWDKYGGKQPEGKIVVKDRIADNMFQQ 282
Query: 80 ALKGNGGF-VWACKNYDGDVQSDIVAQGYGSLGLMTSILMCP-----DGKTIESEAAHGT 133
L + V A N +GD SD A G LG + P DG + E HG+
Sbjct: 283 ILTRTDEYDVIALPNLNGDYLSDAAAALIGGLG------IAPGSNIGDGIGV-FEPVHGS 335
>1tyo_A Isocitrate dehydrogenase; enzyme-ethenonadp complex,
oxidoreductase; HET: ENP; 2.15A {Aeropyrum pernix} PDB:
1v94_A 1xgv_A 1xkd_A*
Length = 435
Score = 46.6 bits (111), Expect = 6e-07
Identities = 29/120 (24%), Positives = 44/120 (36%), Gaps = 27/120 (22%)
Query: 34 KNTILKKYDGHFKDIFQEV--------------YEKNYKSQFEQAKIWYEHRLIDDMVAQ 79
K I+K +G F EV ++ Y + KI R+ D+M+ Q
Sbjct: 233 KGNIMKYTEGAFMRWAYEVALEKFREHVVTEQEVQEKYGGVRPEGKILVNDRIADNMLQQ 292
Query: 80 ALKGNGGF-VWACKNYDGDVQSDIVAQGYGSLGLMTSILMCP-----DGKTIESEAAHGT 133
+ + V N +GD SD + G +G M DG + +E HGT
Sbjct: 293 IITRPWDYQVIVAPNLNGDYISDAASALVGGIG------MAAGMNMGDGIAV-AEPVHGT 345
>3dms_A Isocitrate dehydrogenase [NADP]; struc genomics, seattle structural
genomics center for infectious ssgcid, glyoxylate
bypass, manganese; 1.65A {Burkholderia pseudomallei}
PDB: 1pb1_A* 1ai3_A* 1ika_A* 1ai2_A* 1p8f_A* 1pb3_A
1sjs_A 3icd_A 3lcb_C* 4icd_A* 5icd_A* 9icd_A* 1bl5_A*
1cw7_A* 1idd_A 1ide_A* 1hj6_A* 7icd_A 8icd_A* 6icd_A ...
Length = 427
Score = 46.5 bits (111), Expect = 7e-07
Identities = 28/119 (23%), Positives = 46/119 (38%), Gaps = 26/119 (21%)
Query: 34 KNTILKKYDGHFKDIFQEVYEKNYKSQF-------------EQAKIWYEHRLIDDMVAQA 80
K I+K +G F+D + +K + ++ +I + + D + Q
Sbjct: 240 KGNIMKFTEGAFRDAGYALAQKEFGAELIDGGPWMKFKNPKTGNEIVVKDSIADAFLQQI 299
Query: 81 LKGNGGF-VWACKNYDGDVQSDIVAQGYGSLGLMTSILMCP-----DGKTIESEAAHGT 133
L + V A N +GD SD +A G +G + P D + EA HGT
Sbjct: 300 LLRPAEYDVIATLNLNGDYISDALAAQVGGIG------IAPGANLSDSVAM-FEATHGT 351
>1x0l_A Homoisocitrate dehydrogenase; oxidoreductase, decarboxylating
dehydrogenase, lysine biosyn; 1.85A {Thermus
thermophilus} PDB: 3asj_A* 3ah3_A
Length = 333
Score = 45.2 bits (108), Expect = 2e-06
Identities = 26/104 (25%), Positives = 41/104 (39%), Gaps = 14/104 (13%)
Query: 33 TKNTILKKYDGHFKDIFQEVYEKNYKSQFEQAKIWYEHRLIDDMVAQALKGNGGF-VWAC 91
K +L G F D +EV K++ + + ++D+ Q + F V
Sbjct: 169 HKANVLPLTQGLFLDTVKEVA-KDFPL------VNVQDIIVDNCAMQLVMRPERFDVIVT 221
Query: 92 KNYDGDVQSDIVAQGYGSLGLMTSILMCPDGKTIES--EAAHGT 133
N GD+ SD+ A G LGL S + + E HG+
Sbjct: 222 TNLLGDILSDLAAGLVGGLGLAPSGNIGDTT----AVFEPVHGS 261
>3ty4_A Probable homoisocitrate dehydrogenase; B-hydroxyacid oxidative
decarboxylase, amino-acid biosynthes lysine
biosynthesis; 1.55A {Schizosaccharomyces pombe} PDB:
3ty3_A
Length = 366
Score = 43.4 bits (103), Expect = 7e-06
Identities = 25/113 (22%), Positives = 44/113 (38%), Gaps = 29/113 (25%)
Query: 33 TKNTILKKYDGHFKDIFQEVYE--KNYKSQFEQAKIWYEHRLIDDMVAQALKGNGGFVWA 90
K+ ++ DG F++ + +Y S I + +++D MV +
Sbjct: 199 HKSNVMSVTDGLFRESCRHAQSLDPSYAS------INVDEQIVDSMVYR-------LFRE 245
Query: 91 CKNYD--------GDVQSDIVAQGYGSLGLMTSILMCPDGKTIES--EAAHGT 133
+ +D GD+ SD A GSLGL+ S + + E HG+
Sbjct: 246 PECFDVVVAPNLYGDILSDGAASLIGSLGLVPSANVGDNF----VMSEPVHGS 294
>1hqs_A Isocitrate dehydrogenase; glyoxylate bypass, bsidh, tricarboxylic
acid cycle, oxidoreductase, protein phosphorylation,
NADP; HET: CME CIT; 1.55A {Bacillus subtilis} SCOP:
c.77.1.1
Length = 423
Score = 42.7 bits (101), Expect = 1e-05
Identities = 31/128 (24%), Positives = 45/128 (35%), Gaps = 27/128 (21%)
Query: 33 TKNTILKKYDGHFKDIFQEVYEKNYKSQF--------------------------EQAKI 66
K I+K +G FK+ E+ EK Y + KI
Sbjct: 220 HKGNIMKFTEGAFKNWGYELAEKEYGDKVFTWAQYDRIAEEQGKDAANKAQSEAEAAGKI 279
Query: 67 WYEHRLIDDMVAQALKGNGGF-VWACKNYDGDVQSDIVAQGYGSLGLMTSILMCPDGKTI 125
+ + D + Q L F V A N +GD SD +A G +G+ + +
Sbjct: 280 IIKDSIADIFLQQILTRPNEFDVVATMNLNGDYISDALAAQVGGIGIAPGANINYETGHA 339
Query: 126 ESEAAHGT 133
EA HGT
Sbjct: 340 IFEATHGT 347
>2d4v_A Isocitrate dehydrogenase; alpha and beta protein,
isocitrate/isopropylmalate dehydrogenase-like fold,
oxidoreductase; HET: FLC NAD; 1.90A {Acidithiobacillus
thiooxidans}
Length = 429
Score = 41.6 bits (98), Expect = 3e-05
Identities = 34/145 (23%), Positives = 52/145 (35%), Gaps = 40/145 (27%)
Query: 22 ALQKKWP-LYLSTKNTILKKYDGHFKDIFQEVYEKNYKSQ-------------------- 60
AL+ P + L K I+K +G F+D + E+ + +
Sbjct: 217 ALEHGKPSVSLVHKGNIMKFTEGGFRDWGYALAEREFAGRVFTWRQKAAISKAEGKAAGQ 276
Query: 61 ------FEQAKIWYEHRLIDDMVAQALKGNGGF-VWACKNYDGDVQSDIVAQGYGSLGLM 113
K+ + + D+ + Q L + V A N +GD SD +A G +G
Sbjct: 277 KAEQQAIADGKLIIKDVIADNFLQQILLRPEDYSVVATLNLNGDYVSDALAAEVGGIG-- 334
Query: 114 TSILMCP-----DGKTIESEAAHGT 133
M P D I EA HGT
Sbjct: 335 ----MAPGANLSDTHAI-FEATHGT 354
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.5 bits (73), Expect = 0.053
Identities = 17/82 (20%), Positives = 31/82 (37%), Gaps = 19/82 (23%)
Query: 23 LQKK-------WPLYLSTKNTI--LKKYDGHFKDIFQEVYE------KNYKSQFEQAKIW 67
L++K W S NT+ LK Y + D YE ++ + E+ I
Sbjct: 503 LEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDN-DPKYERLVNAILDFLPKIEENLIC 561
Query: 68 YEHRLIDDMVAQALKGNGGFVW 89
++ D++ AL ++
Sbjct: 562 SKYT---DLLRIALMAEDEAIF 580
Score = 30.2 bits (67), Expect = 0.29
Identities = 14/90 (15%), Positives = 27/90 (30%), Gaps = 27/90 (30%)
Query: 7 PEST---FWIFGKPTYNV----------ALQKKWP---------LYLSTKNTILKKYDGH 44
P W F +V +L +K P +YL K + +Y H
Sbjct: 388 PTILLSLIW-FDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALH 446
Query: 45 FKDI----FQEVYEKNYKSQFEQAKIWYEH 70
+ + ++ + + +Y H
Sbjct: 447 RSIVDHYNIPKTFDSDDLIPPYLDQYFYSH 476
>1vlc_A 3-isopropylmalate dehydrogenase; TM0556, structural genomics PSI,
protein structure initiative, joint center for structu
genomics; 1.90A {Thermotoga maritima} SCOP: c.77.1.1
Length = 366
Score = 30.2 bits (69), Expect = 0.22
Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 68 YEHRLIDDMVAQALKGNGGF-VWACKNYDGDVQSDIVAQGYGSLGLMTS 115
H +D+ Q + F V N GD+ SD A GSLGL+ S
Sbjct: 225 LTHIYVDNAAMQLILKPSQFDVILTTNMFGDILSDESAALPGSLGLLPS 273
>3flk_A Tartrate dehydrogenase/decarboxylase; cytoplasm, lyase, magnesium,
manganese, NAD, oxidoreductase; HET: NAD; 2.00A
{Pseudomonas putida} PDB: 3fmx_X*
Length = 364
Score = 30.2 bits (69), Expect = 0.22
Identities = 21/103 (20%), Positives = 42/103 (40%), Gaps = 11/103 (10%)
Query: 33 TKNTILKKYDGHFKDIFQEVYEKNYKSQFEQAKIWYEHRLIDDMVAQALKGNGGF-VWAC 91
TK+ + ++ + + +Y + ++ + ID + A+ + F V
Sbjct: 191 TKSNGMAISMPYWDKRTEAM-AAHYPH------VSWDKQHIDILCARFVLQPERFDVVVA 243
Query: 92 KNYDGDVQSDIVAQGYGSLGLMTSILMCPDGKTIES--EAAHG 132
N GD+ SD+ G++G+ S + P+ S E HG
Sbjct: 244 SNLFGDILSDLGPACAGTIGIAPSANLNPERNFP-SLFEPVHG 285
>3udu_A 3-isopropylmalate dehydrogenase; structural genomics, center for
structural genomics of infec diseases, csgid,
oxidoreductase; 1.85A {Campylobacter jejuni} PDB: 3udo_A
Length = 361
Score = 29.8 bits (68), Expect = 0.29
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 68 YEHRLIDDMVAQALKGNGGF-VWACKNYDGDVQSDIVAQGYGSLGLMTS 115
E+ +D+ Q +K F V C N GD+ SD +A GSLGL++S
Sbjct: 218 LEYMYVDNAAMQIVKNPSIFDVMLCSNLFGDILSDELAAINGSLGLLSS 266
>3u1h_A 3-isopropylmalate dehydrogenase; oxidored; 2.80A {Bacillus SP} PDB:
2ayq_A 1v53_A 1v5b_A
Length = 390
Score = 29.5 bits (67), Expect = 0.40
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 68 YEHRLIDDMVAQALKGNGGF-VWACKNYDGDVQSDIVAQGYGSLGLMTS 115
EH L+D+ Q ++ F V +N GD+ SD + GSLG++ S
Sbjct: 237 LEHMLVDNAAMQLIRNPRQFDVIVTENMFGDILSDEASMITGSLGMLPS 285
>1cnz_A IPMDH, IMDH, protein (3-isopropylmalate dehydrogenase);
oxidoreductase, leucine biosynthetic pathway,
NAD-dependant enzyme; 1.76A {Salmonella typhimurium}
SCOP: c.77.1.1 PDB: 1cm7_A
Length = 363
Score = 29.4 bits (67), Expect = 0.40
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 68 YEHRLIDDMVAQALKGNGGF-VWACKNYDGDVQSDIVAQGYGSLGLMTS 115
H ID+ Q +K F V C N GD+ SD A GS+G++ S
Sbjct: 221 LAHMYIDNATMQLIKDPSQFDVLLCSNLFGDILSDECAMITGSMGMLPS 269
>3vmk_A 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating
dehydrogenase; HET: IPM; 1.48A {Shewanella benthica}
PDB: 3vmj_A* 3vl2_A* 3vkz_A* 3vl4_A* 3vl6_A* 3vl7_A*
3vl3_A*
Length = 375
Score = 29.1 bits (66), Expect = 0.47
Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 68 YEHRLIDDMVAQALKGNGGF-VWACKNYDGDVQSDIVAQGYGSLGLMTS 115
EH ID+ Q L+ F V C N GD+ SD +A GS+GL+ S
Sbjct: 230 LEHIYIDNATMQLLRRPNEFDVMLCSNLFGDIVSDEIAMLTGSMGLLAS 278
>3r8w_A 3-isopropylmalate dehydrogenase 2, chloroplastic; dimer, isocitrate
and isopropylmalate dehydrogenases family, biosynthesis;
2.25A {Arabidopsis thaliana}
Length = 405
Score = 29.1 bits (66), Expect = 0.51
Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 68 YEHRLIDDMVAQALKGNGGF-VWACKNYDGDVQSDIVAQGYGSLGLMTS 115
H +D+ Q ++ F N GD+ SD + GS+G++ S
Sbjct: 258 LSHMYVDNAAMQLVRDPKQFDTIVTNNIFGDILSDEASMITGSIGMLPS 306
>1a05_A IPMDH, IMDH, 3-isopropylmalate dehydrogenase; oxidoreductase,
decarboxylating dehydrogenase, leucine biosynthesis;
HET: IPM; 2.00A {Acidithiobacillus ferrooxidans} SCOP:
c.77.1.1
Length = 358
Score = 29.0 bits (66), Expect = 0.56
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 68 YEHRLIDDMVAQALKGNGGF-VWACKNYDGDVQSDIVAQGYGSLGLMTS 115
H +D+ Q ++ F V N GD+ SD +Q GS+G++ S
Sbjct: 216 LSHMYVDNAAMQLIRAPAQFDVLLTGNMFGDILSDEASQLTGSIGMLPS 264
>2y3z_A 3-isopropylmalate dehydrogenase; oxidoreductase, LEUB, leucine
biosynthesis; HET: 2PE; 1.83A {Thermus thermophilus}
PDB: 2y40_A 2y41_A* 2y42_A* 1xaa_A 1osi_A 1hex_A 1xab_A
2ztw_A* 1g2u_A 1gc9_A 1osj_A 1ipd_A 1gc8_A 1wal_A 1dpz_A
1dr0_A 1dr8_A 1idm_A 1xac_A 1xad_A
Length = 359
Score = 28.7 bits (65), Expect = 0.64
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 68 YEHRLIDDMVAQALKGNGGF-VWACKNYDGDVQSDIVAQGYGSLGLMTS 115
EH+ +D M ++ F V N GD+ SD+ + GSLGL+ S
Sbjct: 214 LEHQYVDAMAMHLVRSPARFDVVVTGNIFGDILSDLASVLPGSLGLLPS 262
>1zbo_A Hypothetical protein BPP1347; alpha-beta protein, structural
genomics, PSI, protein struct initiative; 2.60A
{Bordetella parapertussis} SCOP: b.122.1.10
Length = 210
Score = 26.7 bits (59), Expect = 2.5
Identities = 6/51 (11%), Positives = 14/51 (27%), Gaps = 3/51 (5%)
Query: 75 DMVAQALKGNGGFVWACKNYDGDVQSDIVAQG---YGSLGLMTSILMCPDG 122
DMV + + F +V+ + G++ +
Sbjct: 30 DMVRRCIADGSEFGVVVLEQGTEVRRPDGREVLARAGTMARIDHWEAPMPA 80
>1w0d_A 3-isopropylmalate dehydrogenase; oxidoreductase, leucine
biosynthesis, NAD, ST genomics, PSI, protein structure
initiative; 1.65A {Mycobacterium tuberculosis} SCOP:
c.77.1.1 PDB: 2g4o_A
Length = 337
Score = 27.1 bits (61), Expect = 2.7
Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 4/67 (5%)
Query: 69 EHRLIDDMVAQALKGNGGF-VWACKNYDGDVQSDIVAQGYGSLGLMTSILMCPDGKTIES 127
++ +D + G F V N GD+ +D+ A G +GL S + S
Sbjct: 207 AYQHVDAATIHMITDPGRFDVIVTDNLFGDIITDLAAAVCGGIGLAASGNIDATRANP-S 265
Query: 128 --EAAHG 132
E HG
Sbjct: 266 MFEPVHG 272
>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase,
transferase-transferase inhibitor; HET: SUC 3CX FPP 778;
2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B*
3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B*
Length = 520
Score = 26.4 bits (57), Expect = 5.2
Identities = 13/63 (20%), Positives = 20/63 (31%)
Query: 72 LIDDMVAQALKGNGGFVWACKNYDGDVQSDIVAQGYGSLGLMTSILMCPDGKTIESEAAH 131
L+D + + L FV AC+ Y+G P + +EA
Sbjct: 208 LLDIITPELLHNVDKFVSACQTYEGGFACASFPFPSVVPSTSAFPTSEPSCRVSMAEAHG 267
Query: 132 GTV 134
G
Sbjct: 268 GYT 270
>3qt4_A Cathepsin-L-like midgut cysteine proteinase; hydrolase, zymogen,
intramolecular DISS bonds, insect larVal midgut; HET:
PG4 PG6; 2.11A {Tenebrio molitor}
Length = 329
Score = 26.1 bits (58), Expect = 6.0
Identities = 10/51 (19%), Positives = 23/51 (45%), Gaps = 5/51 (9%)
Query: 41 YDGHFKDIFQEVYEKNYKSQFEQAK---IWYE-HRLIDDMVAQALKGNGGF 87
+ + F+ ++K+Y S E+ + I+ + I + A+ KG +
Sbjct: 23 FQEQWSQ-FKLTHKKSYSSPIEEIRRQLIFKDNVAKIAEHNAKFEKGEVTY 72
>1by8_A Protein (procathepsin K); hydrolase(sulfhydryl proteinase),
papain; 2.60A {Homo sapiens} SCOP: d.3.1.1 PDB: 7pck_A
Length = 314
Score = 25.3 bits (56), Expect = 8.5
Identities = 9/51 (17%), Positives = 23/51 (45%), Gaps = 5/51 (9%)
Query: 41 YDGHFKDIFQEVYEKNYKSQFEQAK---IWYE-HRLIDDMVAQALKGNGGF 87
D H++ +++ + K Y ++ ++ IW + + I +A G +
Sbjct: 7 LDTHWEL-WKKTHRKQYNNKVDEISRRLIWEKNLKYISIHNLEASLGVHTY 56
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.136 0.425
Gapped
Lambda K H
0.267 0.0507 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,404,245
Number of extensions: 134317
Number of successful extensions: 358
Number of sequences better than 10.0: 1
Number of HSP's gapped: 341
Number of HSP's successfully gapped: 44
Length of query: 152
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 67
Effective length of database: 4,328,508
Effective search space: 290010036
Effective search space used: 290010036
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.7 bits)