RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12309
(152 letters)
>d1lwda_ c.77.1.1 (A:) NADP-dependent isocitrate dehydrogenase {Pig
(Sus scrofa) [TaxId: 9823]}
Length = 413
Score = 103 bits (257), Expect = 2e-27
Identities = 98/125 (78%), Positives = 112/125 (89%)
Query: 20 NVALQKKWPLYLSTKNTILKKYDGHFKDIFQEVYEKNYKSQFEQAKIWYEHRLIDDMVAQ 79
A+QKKWPLY+STKNTILK YDG FKDIFQE++EK+YK+ F++ KIWYEHRLIDDMVAQ
Sbjct: 198 QYAIQKKWPLYMSTKNTILKAYDGRFKDIFQEIFEKHYKTDFDKYKIWYEHRLIDDMVAQ 257
Query: 80 ALKGNGGFVWACKNYDGDVQSDIVAQGYGSLGLMTSILMCPDGKTIESEAAHGTVTRHYR 139
LK +GGFVWACKNYDGDVQSDI+AQG+GSLGLMTS+L+CPDGKTIE+EAAHGTVTRHYR
Sbjct: 258 VLKSSGGFVWACKNYDGDVQSDILAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYR 317
Query: 140 FLGIN 144
Sbjct: 318 EHQKG 322
>d1t0la_ c.77.1.1 (A:) NADP-dependent isocitrate dehydrogenase
{Human (Homo sapiens) [TaxId: 9606]}
Length = 414
Score = 99 bits (248), Expect = 3e-26
Identities = 100/122 (81%), Positives = 111/122 (90%)
Query: 19 YNVALQKKWPLYLSTKNTILKKYDGHFKDIFQEVYEKNYKSQFEQAKIWYEHRLIDDMVA 78
+ +AL K WPLYLSTKNTILKKYDG FKDIFQE+Y+K YKSQFE KIWYEHRLIDDMVA
Sbjct: 197 FQMALSKGWPLYLSTKNTILKKYDGRFKDIFQEIYDKQYKSQFEAQKIWYEHRLIDDMVA 256
Query: 79 QALKGNGGFVWACKNYDGDVQSDIVAQGYGSLGLMTSILMCPDGKTIESEAAHGTVTRHY 138
QA+K GGF+WACKNYDGDVQSD VAQGYGSLG+MTS+L+CPDGKT+E+EAAHGTVTRHY
Sbjct: 257 QAMKSEGGFIWACKNYDGDVQSDSVAQGYGSLGMMTSVLVCPDGKTVEAEAAHGTVTRHY 316
Query: 139 RF 140
R
Sbjct: 317 RM 318
>d1hqsa_ c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Bacillus
subtilis [TaxId: 1423]}
Length = 423
Score = 72.0 bits (176), Expect = 3e-16
Identities = 30/145 (20%), Positives = 49/145 (33%), Gaps = 9/145 (6%)
Query: 2 FADSRPESTFWIFGKPT---YNVALQKKWPLYLSTKNTILKKYDGHFKDIF-----QEVY 53
+A + + K + K W L+ K K + D ++
Sbjct: 207 YAIEHGRKSVTLVHKGNIMKFTEGAFKNWGYELAEKEYGDKVFTWAQYDRIAEEQGKDAA 266
Query: 54 EKNYKSQFEQAKIWYEHRLIDDMVAQALKGNGGF-VWACKNYDGDVQSDIVAQGYGSLGL 112
K KI + + D + Q L F V A N +GD SD +A G +G+
Sbjct: 267 NKAQSEAEAAGKIIIKDSIADIFLQQILTRPNEFDVVATMNLNGDYISDALAAQVGGIGI 326
Query: 113 MTSILMCPDGKTIESEAAHGTVTRH 137
+ + EA HGT ++
Sbjct: 327 APGANINYETGHAIFEATHGTAPKY 351
>d1pb1a_ c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Escherichia
coli [TaxId: 562]}
Length = 416
Score = 58.2 bits (140), Expect = 2e-11
Identities = 28/129 (21%), Positives = 49/129 (37%), Gaps = 16/129 (12%)
Query: 24 QKKWPLYLSTKNTILKKYDGHFKDIFQEVYEKNYKSQFEQAKIW-------------YEH 70
+ + L K I+K +G FKD ++ + + + W +
Sbjct: 220 NDRDSVTLVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPWLKVKNPNTGKEIVIKD 279
Query: 71 RLIDDMVAQALKGNGGF-VWACKNYDGDVQSDIVAQGYGSLGLMTSILMCPDGKTIESEA 129
+ D + Q L + V AC N +GD SD +A G +G+ + + EA
Sbjct: 280 VIADAFLQQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAPGANIGDECALF--EA 337
Query: 130 AHGTVTRHY 138
HGT ++
Sbjct: 338 THGTAPKYA 346
>d1vlca_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH
{Thermotoga maritima [TaxId: 2336]}
Length = 362
Score = 54.3 bits (130), Expect = 5e-10
Identities = 26/122 (21%), Positives = 42/122 (34%), Gaps = 12/122 (9%)
Query: 19 YNVALQKKWPLYLSTKNTILKKYDGHFKDIFQEVYEKNYKSQFEQAKIWYEHRLIDDMVA 78
+ +A ++ + K +L ++ + EV E + H +D+
Sbjct: 180 FEIAKNRRKKVTSVDKANVLYS-SMLWRKVVNEVAR-------EYPDVELTHIYVDNAAM 231
Query: 79 QALKGNGGF-VWACKNYDGDVQSDIVAQGYGSLGLMTSILMCPDGKTIESEAAHGTVTRH 137
Q + F V N GD+ SD A GSLGL+ S E A G+
Sbjct: 232 QLILKPSQFDVILTTNMFGDILSDESAALPGSLGLLPSASFGDK---NLYEPAGGSAPDI 288
Query: 138 YR 139
Sbjct: 289 AG 290
>d1itwa_ c.77.1.2 (A:) Monomeric isocitrate dehydrogenase
{Azotobacter vinelandii [TaxId: 354]}
Length = 740
Score = 48.6 bits (116), Expect = 5e-08
Identities = 16/109 (14%), Positives = 33/109 (30%), Gaps = 8/109 (7%)
Query: 38 LKKYDGHFKDIFQEVYEKNYKSQFEQAKIWYEHRLIDDMVAQALKGNGGFVWACKNYDGD 97
L H D + Y ++ + + + +L + G+
Sbjct: 487 LDPARAH--DAQVIAKVERYLKDYDTSGLDIRILSPVEATRFSLARIREGKD-TISVTGN 543
Query: 98 VQSDIVAQGYGSLGL-----MTSILMCPDGKTIESEAAHGTVTRHYRFL 141
V D + + + L M SI+ G + A G+ +H +
Sbjct: 544 VLRDYLTDLFPIMELGTSAKMLSIVPLMSGGGLFETGAGGSAPKHVQQF 592
>d1wpwa_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH
{Sulfolobus tokodaii [TaxId: 111955]}
Length = 336
Score = 44.0 bits (103), Expect = 2e-06
Identities = 21/113 (18%), Positives = 41/113 (36%), Gaps = 8/113 (7%)
Query: 19 YNVALQKKWPLYLSTKNTILKKYDGHFKDIFQEVYEKNYKSQFEQAKIWYEHRLIDDMVA 78
N AL+++ + K +++ DG F + + V + + + + + +
Sbjct: 154 LNFALRRRKKVTCVHKANVMRITDGLFAEACRSVLKGKVEYSEMYVDAAAANLVRNPQMF 213
Query: 79 QALKGNGGFVWACKNYDGDVQSDIVAQGYGSLGLMTSILMCPDGKTIESEAAH 131
V +N GD+ SD +Q GSLG+ S + E
Sbjct: 214 D--------VIVTENVYGDILSDEASQIAGSLGIAPSANIGDKKALFEPVHGA 258
>d1w0da_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 337
Score = 30.2 bits (67), Expect = 0.074
Identities = 16/91 (17%), Positives = 28/91 (30%), Gaps = 2/91 (2%)
Query: 45 FKDIFQEVYEKNYKSQFEQAKIWYEHRLIDDMVAQALKGNGGF-VWACKNYDGDVQSDIV 103
+ + ++ +D + G F V N GD+ +D+
Sbjct: 183 LTFAGGLWLRTVDEVGECYPDVEVAYQHVDAATIHMITDPGRFDVIVTDNLFGDIITDLA 242
Query: 104 AQGYGSLGLMTSILMCPDGKTIE-SEAAHGT 133
A G +GL S + E HG+
Sbjct: 243 AAVCGGIGLAASGNIDATRANPSMFEPVHGS 273
>d2fiua1 d.58.4.16 (A:1-95) Hypothetical protein Atu0297
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 95
Score = 24.8 bits (54), Expect = 3.0
Identities = 10/69 (14%), Positives = 25/69 (36%), Gaps = 13/69 (18%)
Query: 11 FWIFGKPTYNVALQKKWPLYLSTKNTILKKYDGHF--KDIFQEVYEKNYKSQ-------- 60
+WI +V +++ Y+ST +++ +F + E +++
Sbjct: 5 YWIA---QVDVRDSERYKDYVSTAKPAFERFGANFLARGGSVTELEGTARARNVVIEFPS 61
Query: 61 FEQAKIWYE 69
+ A Y
Sbjct: 62 VQHAIDCYN 70
>d1nkta3 c.37.1.19 (A:-15-225,A:350-396) Translocation ATPase SecA,
nucleotide-binding domains {Mycobacterium tuberculosis
[TaxId: 1773]}
Length = 288
Score = 24.9 bits (54), Expect = 4.3
Identities = 12/57 (21%), Positives = 21/57 (36%), Gaps = 1/57 (1%)
Query: 76 MVAQALKGNGGFVWACKNYDGDVQSDIVAQGYGSLGLMTSILMCPDGKTIESEAAHG 132
AL GNG + +Y S+ + + + LGL ++ E A+
Sbjct: 131 AYLNALAGNGVHIVTVNDYLAKRDSEWMGRVHRFLGLQVGVI-LATMTPDERRVAYN 186
>d1i7ha_ d.15.4.1 (A:) Adrenodoxin-like ferredoxin {Escherichia coli
[TaxId: 562]}
Length = 109
Score = 24.2 bits (52), Expect = 5.8
Identities = 5/18 (27%), Positives = 11/18 (61%)
Query: 112 LMTSILMCPDGKTIESEA 129
++ +CPDG +E+ +
Sbjct: 5 ILPHQDLCPDGAVLEANS 22
>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon
Thermoplasma acidophilum [TaxId: 2303]}
Length = 360
Score = 24.4 bits (51), Expect = 8.2
Identities = 12/133 (9%), Positives = 30/133 (22%), Gaps = 2/133 (1%)
Query: 4 DSRPESTFWIFGKPTYNVALQKKWPLYLSTKNTILKKYDGHFKDIFQEVYEKNYKSQFEQ 63
D + + + + L P + G +
Sbjct: 206 DRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGD 265
Query: 64 AKIWYEHRLIDDMVAQALKGNGGFVWACKNYDGDVQSDIVAQG--YGSLGLMTSILMCPD 121
++ + + + G + G + V +T + + D
Sbjct: 266 YRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVKNNLTDLRLSAD 325
Query: 122 GKTIESEAAHGTV 134
KT+ G +
Sbjct: 326 RKTVMVRKDDGKI 338
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.136 0.425
Gapped
Lambda K H
0.267 0.0373 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 600,632
Number of extensions: 26924
Number of successful extensions: 89
Number of sequences better than 10.0: 1
Number of HSP's gapped: 86
Number of HSP's successfully gapped: 17
Length of query: 152
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 74
Effective length of database: 1,336,656
Effective search space: 98912544
Effective search space used: 98912544
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.6 bits)