BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1231
(151 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4G85|A Chain A, Crystal Structure Of Human Hisrs
pdb|4G85|B Chain B, Crystal Structure Of Human Hisrs
Length = 517
Score = 121 bits (304), Expect = 1e-28, Method: Composition-based stats.
Identities = 63/113 (55%), Positives = 75/113 (66%), Gaps = 6/113 (5%)
Query: 5 APMADIQESIKAQGDVVRKLKSSKAPKEQIDEEVKKLLELKNQLKINDEANEDNSTHKFI 64
A A ++E +K QG+ VR LK KA E I+EEV KLL+LK QL D S KF+
Sbjct: 13 AERAALEELVKLQGERVRGLKQQKASAELIEEEVAKLLKLKAQL------GPDESKQKFV 66
Query: 65 LKTPKGTRDYGPDSTVVRNQVLDKIVKIFKKHGAVTIDTPIFELKEVLTGKYG 117
LKTPKGTRDY P VR +V D I++ FK+HGA IDTP+FELKE L GKYG
Sbjct: 67 LKTPKGTRDYSPRQMAVREKVFDVIIRCFKRHGAEVIDTPVFELKETLMGKYG 119
>pdb|4G84|A Chain A, Crystal Structure Of Human Hisrs
pdb|4G84|B Chain B, Crystal Structure Of Human Hisrs
Length = 464
Score = 84.7 bits (208), Expect = 2e-17, Method: Composition-based stats.
Identities = 36/56 (64%), Positives = 43/56 (76%)
Query: 62 KFILKTPKGTRDYGPDSTVVRNQVLDKIVKIFKKHGAVTIDTPIFELKEVLTGKYG 117
+F+LKTPKGTRDY P VR +V D I++ FK+HGA IDTP+FELKE L GKYG
Sbjct: 11 QFVLKTPKGTRDYSPRQMAVREKVFDVIIRCFKRHGAEVIDTPVFELKETLMGKYG 66
>pdb|1X59|A Chain A, Solution Structures Of The Whep-Trs Domain Of Human
Histidyl-Trna Synthetase
Length = 73
Score = 57.0 bits (136), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 44/77 (57%), Gaps = 10/77 (12%)
Query: 2 SSAAPMADIQESIKAQGDVVRKLKSSKAPKEQIDEEVKKLLELKNQLKINDEANEDNSTH 61
S A A ++E +K QG+ VR LK KA E I+EEV KLL+LK QL D S
Sbjct: 6 SGMAERAALEELVKLQGERVRGLKQQKASAELIEEEVAKLLKLKAQL------GPDESKQ 59
Query: 62 KFILKTPKGTRDYGPDS 78
KF+LKTPK GP S
Sbjct: 60 KFVLKTPK----SGPSS 72
>pdb|2AZX|A Chain A, Charged And Uncharged Trnas Adopt Distinct Conformations
When Complexed With Human Tryptophanyl-Trna Synthetase
pdb|2AZX|B Chain B, Charged And Uncharged Trnas Adopt Distinct Conformations
When Complexed With Human Tryptophanyl-Trna Synthetase
Length = 477
Score = 45.4 bits (106), Expect = 1e-05, Method: Composition-based stats.
Identities = 30/86 (34%), Positives = 43/86 (50%), Gaps = 3/86 (3%)
Query: 2 SSAAPMADIQESIKAQGDVVRKLKSSKAPKEQIDEEVKKLLELKNQLKINDEANEDNSTH 61
S A + ++ SI QG++VR LK+ A K++ID VK L+ LK K A ED
Sbjct: 4 SEPASLLELFNSIATQGELVRSLKAGNASKDEIDSAVKXLVSLKXSYKA--AAGEDYKA- 60
Query: 62 KFILKTPKGTRDYGPDSTVVRNQVLD 87
P T ++GPD+T +D
Sbjct: 61 DCPPGNPAPTSNHGPDATEAEEDFVD 86
>pdb|1R6T|A Chain A, Crystal Structure Of Human Tryptophanyl-Trna Synthetase
pdb|1R6T|B Chain B, Crystal Structure Of Human Tryptophanyl-Trna Synthetase
Length = 477
Score = 45.4 bits (106), Expect = 1e-05, Method: Composition-based stats.
Identities = 30/86 (34%), Positives = 43/86 (50%), Gaps = 3/86 (3%)
Query: 2 SSAAPMADIQESIKAQGDVVRKLKSSKAPKEQIDEEVKKLLELKNQLKINDEANEDNSTH 61
S A + ++ SI QG++VR LK+ A K++ID VK L+ LK K A ED
Sbjct: 4 SEPASLLELFNSIATQGELVRSLKAGNASKDEIDSAVKXLVSLKXSYKA--AAGEDYKA- 60
Query: 62 KFILKTPKGTRDYGPDSTVVRNQVLD 87
P T ++GPD+T +D
Sbjct: 61 DCPPGNPAPTSNHGPDATEAEEDFVD 86
>pdb|2QUH|A Chain A, Crystal Structures Of Human Tryptophanyl-Trna Synthetase
In Complex With Trp
pdb|2QUI|A Chain A, Crystal Structures Of Human Tryptophanyl-Trna Synthetase
In Complex With Tryptophanamide And Atp
pdb|2QUI|B Chain B, Crystal Structures Of Human Tryptophanyl-Trna Synthetase
In Complex With Tryptophanamide And Atp
pdb|2QUJ|A Chain A, Crystal Structures Of Human Tryptophanyl-Trna Synthetase
In Complex With Trpamp
pdb|2QUK|A Chain A, Crystal Structures Of Human Tryptophanyl-Trna Synthetase
In Complex With Atp(Putative)
pdb|2QUH|B Chain B, Crystal Structures Of Human Tryptophanyl-Trna Synthetase
In Complex With Trp
Length = 477
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 45/90 (50%), Gaps = 11/90 (12%)
Query: 2 SSAAPMADIQESIKAQGDVVRKLKSSKAPKEQIDEEVKKLLELKNQLKINDEANEDNSTH 61
S A + ++ SI QG++VR LK+ A K++ID VK L+ LK K A ED
Sbjct: 4 SEPASLLELFNSIATQGELVRSLKAGNASKDEIDSAVKMLVSLKMSYKA--AAGED---- 57
Query: 62 KFILKTPKG----TRDYGPDSTVVRNQVLD 87
+ P G T ++GPD+T +D
Sbjct: 58 -YKADCPPGNPAPTSNHGPDATEAEEDFVD 86
>pdb|1FYJ|A Chain A, Solution Structure Of Multi-Functional Peptide Motif-1
Present In Human Glutamyl-Prolyl Trna Synthetase (Eprs)
Length = 57
Score = 43.5 bits (101), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/36 (58%), Positives = 27/36 (75%)
Query: 14 IKAQGDVVRKLKSSKAPKEQIDEEVKKLLELKNQLK 49
+ QGDVVR+LK+ KAPKE +D VK+LL LK + K
Sbjct: 9 VAVQGDVVRELKAKKAPKEDVDAAVKQLLSLKAEYK 44
>pdb|1R1B|A Chain A, Eprs Second Repeated Element, Nmr, Minimized Average
Structure
pdb|1D2D|A Chain A, Hamster Eprs Second Repeated Element. Nmr, 5 Structures
Length = 59
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 29/40 (72%)
Query: 10 IQESIKAQGDVVRKLKSSKAPKEQIDEEVKKLLELKNQLK 49
+ + I AQG+VVRKLK+ KAPK ++ E V+ LL LK + K
Sbjct: 2 VYDKIAAQGEVVRKLKAEKAPKAKVTEAVECLLSLKAEYK 41
>pdb|2Q5H|A Chain A, Crystal Structure Of Apo-Wildtype Glycyl-Trna Synthetase
Length = 691
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 19/99 (19%)
Query: 7 MADIQESIKAQGDVVRKLKSSKAPKEQIDEEVKKL-----------LELKNQLKINDEAN 55
+A ++ +++ QGD+VRKLK KAP+ +D+ V +L L L+ + I D A
Sbjct: 10 LAPLRLAVRQQGDLVRKLKEDKAPQVDVDKAVAELKARKRVLEAKELALQPKDDIVDRAK 69
Query: 56 -EDNSTHKF-------ILKTPKGTRDYGPDSTVVRNQVL 86
ED +F I G D+GP ++N ++
Sbjct: 70 MEDTLKRRFFYDQAFAIYGGVSGLYDFGPVGCALKNNII 108
>pdb|2Q5I|A Chain A, Crystal Structure Of Apo S581l Glycyl-Trna Synthetase
Mutant
Length = 691
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 19/99 (19%)
Query: 7 MADIQESIKAQGDVVRKLKSSKAPKEQIDEEVKKL-----------LELKNQLKINDEAN 55
+A ++ +++ QGD+VRKLK KAP+ +D+ V +L L L+ + I D A
Sbjct: 10 LAPLRLAVRQQGDLVRKLKEDKAPQVDVDKAVAELKARKRVLEAKELALQPKDDIVDRAK 69
Query: 56 -EDNSTHKF-------ILKTPKGTRDYGPDSTVVRNQVL 86
ED +F I G D+GP ++N ++
Sbjct: 70 MEDTLKRRFFYDQAFAIYGGVSGLYDFGPVGCALKNNII 108
>pdb|2PME|A Chain A, The Apo Crystal Structure Of The Glycyl-Trna Synthetase
pdb|2ZT5|A Chain A, Crystal Structure Of Human Glycyl-Trna Synthetase (Glyrs)
In Complex With Ap4a (Cocrystallized With Atp)
pdb|2ZT6|A Chain A, Crystal Structure Of Human Glycyl-Trna Synthetase (Glyrs)
In Complex With Ampcpp
pdb|2ZT7|A Chain A, Crystal Structure Of Human Glycyl-Trna Synthetase (Glyrs)
In Complex With Glycine And Atp
pdb|2ZT8|A Chain A, Crystal Structure Of Human Glycyl-Trna Synthetase (Glyrs)
In Complex With Gly-Amp Analog
pdb|2ZXF|A Chain A, Crystal Structure Of Human Glycyl-Trna Synthetase (Glyrs)
In Complex With Ap4a (Cocrystallized With Ap4a)
Length = 693
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 19/99 (19%)
Query: 7 MADIQESIKAQGDVVRKLKSSKAPKEQIDEEVKKL-----------LELKNQLKINDEAN 55
+A ++ +++ QGD+VRKLK KAP+ +D+ V +L L L+ + I D A
Sbjct: 10 LAPLRLAVRQQGDLVRKLKEDKAPQVDVDKAVAELKARKRVLEAKELALQPKDDIVDRAK 69
Query: 56 -EDNSTHKF-------ILKTPKGTRDYGPDSTVVRNQVL 86
ED +F I G D+GP ++N ++
Sbjct: 70 MEDTLKRRFFYDQAFAIYGGVSGLYDFGPVGCALKNNII 108
>pdb|2PMF|A Chain A, The Crystal Structure Of A Human Glycyl-trna Synthetase
Mutant
Length = 693
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 19/99 (19%)
Query: 7 MADIQESIKAQGDVVRKLKSSKAPKEQIDEEVKKL-----------LELKNQLKINDEAN 55
+A ++ +++ QGD+VRKLK KAP+ +D+ V +L L L+ + I D A
Sbjct: 10 LAPLRLAVRQQGDLVRKLKEDKAPQVDVDKAVAELKARKRVLEAKELALQPKDDIVDRAK 69
Query: 56 -EDNSTHKF-------ILKTPKGTRDYGPDSTVVRNQVL 86
ED +F I G D+GP ++N ++
Sbjct: 70 MEDTLKRRFFYDQAFAIYGGVSGLYDFGPVGCALKNNII 108
>pdb|2DJV|A Chain A, Solution Structures Of The Whep-Trs Domain Of Human
Methionyl-Trna Synthetase
Length = 79
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 30/43 (69%)
Query: 10 IQESIKAQGDVVRKLKSSKAPKEQIDEEVKKLLELKNQLKIND 52
+ + + QG++VR+LK+ KA K ++ EV KLL+LK QL + +
Sbjct: 18 LMDEVTKQGNIVRELKAQKADKNEVAAEVAKLLDLKKQLAVAE 60
>pdb|3NET|A Chain A, Crystal Structure Of Histidyl-Trna Synthetase From Nostoc
Sp. Pcc 7120
pdb|3NET|B Chain B, Crystal Structure Of Histidyl-Trna Synthetase From Nostoc
Sp. Pcc 7120
Length = 465
Score = 34.3 bits (77), Expect = 0.029, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 29/62 (46%)
Query: 54 ANEDNSTHKFILKTPKGTRDYGPDSTVVRNQVLDKIVKIFKKHGAVTIDTPIFELKEVLT 113
+N K TP G ++ P + +LD I ++++ +G I+TP E EVL
Sbjct: 1 SNAXAKNDKINFSTPSGFPEFLPSEKRLELYLLDTIRRVYESYGFTPIETPAVERLEVLQ 60
Query: 114 GK 115
K
Sbjct: 61 AK 62
>pdb|1EYY|A Chain A, Crystal Structure Of The Nadp+ Dependent Aldehyde
Dehydrogenase From Vibrio Harveyi.
pdb|1EYY|B Chain B, Crystal Structure Of The Nadp+ Dependent Aldehyde
Dehydrogenase From Vibrio Harveyi.
pdb|1EYY|C Chain C, Crystal Structure Of The Nadp+ Dependent Aldehyde
Dehydrogenase From Vibrio Harveyi.
pdb|1EYY|D Chain D, Crystal Structure Of The Nadp+ Dependent Aldehyde
Dehydrogenase From Vibrio Harveyi.
pdb|1EZ0|A Chain A, Crystal Structure Of The Nadp+ Dependent Aldehyde
Dehydrogenase From Vibrio Harveyi.
pdb|1EZ0|B Chain B, Crystal Structure Of The Nadp+ Dependent Aldehyde
Dehydrogenase From Vibrio Harveyi.
pdb|1EZ0|C Chain C, Crystal Structure Of The Nadp+ Dependent Aldehyde
Dehydrogenase From Vibrio Harveyi.
pdb|1EZ0|D Chain D, Crystal Structure Of The Nadp+ Dependent Aldehyde
Dehydrogenase From Vibrio Harveyi
Length = 510
Score = 31.6 bits (70), Expect = 0.20, Method: Composition-based stats.
Identities = 23/92 (25%), Positives = 42/92 (45%), Gaps = 5/92 (5%)
Query: 4 AAPMADIQESIKAQGD--VVRKLKSSKAPKEQIDEEVKKLLELKNQLKINDEANEDNSTH 61
A+ + I ++A+ D + R + P+ ++ E+ + NQL++ + S H
Sbjct: 55 ASLLRTIASELEARSDDIIARAHLETALPEVRLTGEIART---ANQLRLFADVVNSGSYH 111
Query: 62 KFILKTPKGTRDYGPDSTVVRNQVLDKIVKIF 93
+ IL TP TR P + R Q+ V +F
Sbjct: 112 QAILDTPNPTRAPLPKPDIRRQQIALGPVAVF 143
>pdb|3HRI|A Chain A, Histidyl-Trna Synthetase (Apo) From Trypanosoma Brucei
pdb|3HRI|B Chain B, Histidyl-Trna Synthetase (Apo) From Trypanosoma Brucei
pdb|3HRI|C Chain C, Histidyl-Trna Synthetase (Apo) From Trypanosoma Brucei
pdb|3HRI|D Chain D, Histidyl-Trna Synthetase (Apo) From Trypanosoma Brucei
pdb|3HRI|E Chain E, Histidyl-Trna Synthetase (Apo) From Trypanosoma Brucei
pdb|3HRI|F Chain F, Histidyl-Trna Synthetase (Apo) From Trypanosoma Brucei
Length = 456
Score = 30.8 bits (68), Expect = 0.28, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 25/49 (51%)
Query: 69 KGTRDYGPDSTVVRNQVLDKIVKIFKKHGAVTIDTPIFELKEVLTGKYG 117
+G RD+ P++ +R + D +K G D+P+ E +E+ K G
Sbjct: 33 QGCRDFPPETMRLRKYLFDVFHSTARKFGFEEYDSPVLESEELYIRKAG 81
>pdb|3HRK|A Chain A, Histidyl-Trna Synthetase From Trypanosoma Cruzi
(Histidyl-Adenylate Complex)
pdb|3HRK|B Chain B, Histidyl-Trna Synthetase From Trypanosoma Cruzi
(Histidyl-Adenylate Complex)
pdb|3LC0|A Chain A, Histidyl-Trna Synthetase From Trypanosoma Cruzi (Histidine
Complex)
Length = 456
Score = 28.9 bits (63), Expect = 1.2, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 22/49 (44%)
Query: 69 KGTRDYGPDSTVVRNQVLDKIVKIFKKHGAVTIDTPIFELKEVLTGKYG 117
+G RD+ P++ R + D K G D P+ E +E+ K G
Sbjct: 33 QGCRDFPPEAMRCRRHLFDVFHATAKTFGFEEYDAPVLESEELYIRKAG 81
>pdb|4AG5|A Chain A, Structure Of Virb4 Of Thermoanaerobacter Pseudethanolicus
pdb|4AG5|B Chain B, Structure Of Virb4 Of Thermoanaerobacter Pseudethanolicus
pdb|4AG5|C Chain C, Structure Of Virb4 Of Thermoanaerobacter Pseudethanolicus
pdb|4AG5|D Chain D, Structure Of Virb4 Of Thermoanaerobacter Pseudethanolicus
Length = 392
Score = 27.7 bits (60), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/46 (26%), Positives = 22/46 (47%)
Query: 63 FILKTPKGTRDYGPDSTVVRNQVLDKIVKIFKKHGAVTIDTPIFEL 108
F+ T K R Y V+ V+D + +++G +D P ++L
Sbjct: 285 FLRDTSKRIRKYNGSLIVISQNVIDFLAPEVQRYGQALLDNPTYKL 330
>pdb|4AG6|A Chain A, Structure Of Virb4 Of Thermoanaerobacter Pseudethanolicus
pdb|4AG6|B Chain B, Structure Of Virb4 Of Thermoanaerobacter Pseudethanolicus
pdb|4AG6|C Chain C, Structure Of Virb4 Of Thermoanaerobacter Pseudethanolicus
pdb|4AG6|D Chain D, Structure Of Virb4 Of Thermoanaerobacter Pseudethanolicus
Length = 392
Score = 27.7 bits (60), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/46 (26%), Positives = 22/46 (47%)
Query: 63 FILKTPKGTRDYGPDSTVVRNQVLDKIVKIFKKHGAVTIDTPIFEL 108
F+ T K R Y V+ V+D + +++G +D P ++L
Sbjct: 285 FLRDTSKRIRKYNGSLIVISQNVIDFLAPEVQRYGQALLDNPTYKL 330
>pdb|3F3B|A Chain A, Structure Of The Phage-Like Element Pbsx Protein Xkdh From
Bacillus Subtilus. Northeast Structural Genomics
Consortium Target Sr352
Length = 126
Score = 27.7 bits (60), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 44 LKNQLKINDEANEDNSTHKFILKTPKGTRDYGPDSTVVRNQVL 86
L +++ND+ +N HK+ILK PK R + + VR++ L
Sbjct: 78 LSADIRVNDKIIWEN--HKYILKLPKRIRHHHWEVVAVRDESL 118
>pdb|3DTP|A Chain A, Tarantula Heavy Meromyosin Obtained By Flexible Docking To
Tarantula Muscle Thick Filament Cryo-Em 3d-Map
Length = 971
Score = 27.3 bits (59), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 26/35 (74%)
Query: 24 LKSSKAPKEQIDEEVKKLLELKNQLKINDEANEDN 58
L+ S+A +++++E++ LL+ KN L++ +A +DN
Sbjct: 873 LEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDN 907
>pdb|3DTP|B Chain B, Tarantula Heavy Meromyosin Obtained By Flexible Docking To
Tarantula Muscle Thick Filament Cryo-Em 3d-Map
Length = 973
Score = 27.3 bits (59), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 26/35 (74%)
Query: 24 LKSSKAPKEQIDEEVKKLLELKNQLKINDEANEDN 58
L+ S+A +++++E++ LL+ KN L++ +A +DN
Sbjct: 873 LEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDN 907
>pdb|3A4W|A Chain A, Crystal Structures Of Catalytic Site Mutants Of Active
Domain 2 Of Thermostable Chitinase From Pyrococcus
Furiosus Complexed With Chito- Oligosaccharides
pdb|3A4W|B Chain B, Crystal Structures Of Catalytic Site Mutants Of Active
Domain 2 Of Thermostable Chitinase From Pyrococcus
Furiosus Complexed With Chito- Oligosaccharides
Length = 311
Score = 26.9 bits (58), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 8 ADIQESIKAQGDVVRKLKSSKAPKEQIDEEVKKLLELKNQLKINDE 53
++ + +IK +V R+LK + E+ DEE+ K++ L + +ND+
Sbjct: 188 SNAENAIKVAENVFRQLK--QIYPEKSDEEIWKMIGLTPMIGVNDD 231
>pdb|3A4X|A Chain A, Crystal Structures Of Catalytic Site Mutants Of Active
Domain 2 Of Thermostable Chitinase From Pyrococcus
Furiosus Complexed With Chito- Oligosaccharides
pdb|3A4X|B Chain B, Crystal Structures Of Catalytic Site Mutants Of Active
Domain 2 Of Thermostable Chitinase From Pyrococcus
Furiosus Complexed With Chito- Oligosaccharides
pdb|3AFB|A Chain A, Crystal Structures Of Catalytic Site Mutants Of Active
Domain 2 Of Chitinase From Pyrococcus Furiosus
pdb|3AFB|B Chain B, Crystal Structures Of Catalytic Site Mutants Of Active
Domain 2 Of Chitinase From Pyrococcus Furiosus
Length = 311
Score = 26.9 bits (58), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 8 ADIQESIKAQGDVVRKLKSSKAPKEQIDEEVKKLLELKNQLKINDE 53
++ + +IK +V R+LK + E+ DEE+ K++ L + +ND+
Sbjct: 188 SNAENAIKVAENVFRQLK--QIYPEKSDEEIWKMIGLTPMIGVNDD 231
>pdb|2DSK|A Chain A, Crystal Structure Of Catalytic Domain Of Hyperthermophilic
Chitinase From Pyrococcus Furiosus
pdb|2DSK|B Chain B, Crystal Structure Of Catalytic Domain Of Hyperthermophilic
Chitinase From Pyrococcus Furiosus
Length = 311
Score = 26.9 bits (58), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 8 ADIQESIKAQGDVVRKLKSSKAPKEQIDEEVKKLLELKNQLKINDE 53
++ + +IK +V R+LK + E+ DEE+ K++ L + +ND+
Sbjct: 188 SNAENAIKVAENVFRQLK--QIYPEKSDEEIWKMIGLTPMIGVNDD 231
>pdb|1FS9|A Chain A, Cytochrome C Nitrite Reductase From Wolinella
Succinogenes-Azide Complex
Length = 507
Score = 26.2 bits (56), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 88 KIVKIFKKHGAVTIDTPIFELKE 110
K+VK+ K+GA+ P FE KE
Sbjct: 427 KLVKVLAKYGAIDYVAPDFETKE 449
>pdb|1FS7|A Chain A, Cytochrome C Nitrite Reductase From Wolinella Succinogenes
pdb|1FS8|A Chain A, Cytochrome C Nitrite Reductase From Wolinella
Succinogenes-Sulfate Complex
pdb|2E80|A Chain A, Cytochrome C Nitrite Reductase From Wolinella Succinogenes
With Bound Substrate Nitrite
pdb|2E81|A Chain A, Cytochrome C Nitrite Reductase From Wolinella Succinogenes
With Bound Intermediate Hydroxylamine
pdb|3BNF|A Chain A, W. Succinogenes Nrfa Sulfite Complex
Length = 485
Score = 26.2 bits (56), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 88 KIVKIFKKHGAVTIDTPIFELKE 110
K+VK+ K+GA+ P FE KE
Sbjct: 405 KLVKVLAKYGAIDYVAPDFETKE 427
>pdb|3BNG|A Chain A, W. Succinogenes Nrfa Y218f
pdb|3BNH|A Chain A, W. Succinogenes Nrfa Y218f Nitrite Complex
pdb|3BNJ|A Chain A, W. Succinogenes Nrfa Y218f Sulfite Complex
Length = 485
Score = 25.8 bits (55), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 88 KIVKIFKKHGAVTIDTPIFELKE 110
K+VK+ K+GA+ P FE KE
Sbjct: 405 KLVKVLAKYGAIDYVAPDFETKE 427
>pdb|4DVZ|A Chain A, Crystal Structure Of The Helicobacter Pylori Caga
Oncoprotein
Length = 569
Score = 25.8 bits (55), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 49/102 (48%), Gaps = 12/102 (11%)
Query: 1 MSSAAPMADIQESIKAQGDVVRKLKSSKAPKEQIDEEVKKLLELKNQLKINDEANEDNST 60
++ A + E KAQ D+ + L+ +E +++EV+K LE K+ K EA ++
Sbjct: 340 VAEAKSTGNYDEVKKAQKDLEKSLR----KREHLEKEVEKKLESKSGNKNKMEAKAQANS 395
Query: 61 HK---FILKTPKGTRD-----YGPDSTVVRNQVLDKIVKIFK 94
K F L + RD Y + ++ ++ DK+ KI K
Sbjct: 396 QKDEIFALINKEANRDARAIAYTQNLKGIKRELSDKLEKISK 437
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.131 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,553,513
Number of Sequences: 62578
Number of extensions: 177998
Number of successful extensions: 619
Number of sequences better than 100.0: 52
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 586
Number of HSP's gapped (non-prelim): 52
length of query: 151
length of database: 14,973,337
effective HSP length: 90
effective length of query: 61
effective length of database: 9,341,317
effective search space: 569820337
effective search space used: 569820337
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.7 bits)