BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1231
(151 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q61035|SYHC_MOUSE Histidine--tRNA ligase, cytoplasmic OS=Mus musculus GN=Hars PE=2
SV=2
Length = 509
Score = 124 bits (310), Expect = 3e-28, Method: Composition-based stats.
Identities = 63/113 (55%), Positives = 76/113 (67%), Gaps = 6/113 (5%)
Query: 5 APMADIQESIKAQGDVVRKLKSSKAPKEQIDEEVKKLLELKNQLKINDEANEDNSTHKFI 64
A A ++E ++ QG VR LK KA EQI+EEV KLL+LK QL +D KF+
Sbjct: 2 ADRAALEELVRLQGAHVRGLKEQKASAEQIEEEVTKLLKLKAQL------GQDEGKQKFV 55
Query: 65 LKTPKGTRDYGPDSTVVRNQVLDKIVKIFKKHGAVTIDTPIFELKEVLTGKYG 117
LKTPKGTRDY P VR +V D I++ FK+HGA IDTP+FELKE LTGKYG
Sbjct: 56 LKTPKGTRDYSPRQMAVREKVFDVIIRCFKRHGAEVIDTPVFELKETLTGKYG 108
>sp|Q5R4R2|SYHC_PONAB Histidine--tRNA ligase, cytoplasmic OS=Pongo abelii GN=HARS PE=2
SV=1
Length = 509
Score = 122 bits (306), Expect = 8e-28, Method: Composition-based stats.
Identities = 63/113 (55%), Positives = 75/113 (66%), Gaps = 6/113 (5%)
Query: 5 APMADIQESIKAQGDVVRKLKSSKAPKEQIDEEVKKLLELKNQLKINDEANEDNSTHKFI 64
A A ++E +K QG+ VR LK KA E I+EEV KLL+LK QL D S KF+
Sbjct: 2 AERAALEELVKLQGERVRGLKQQKASAELIEEEVAKLLKLKAQL------GPDESKQKFV 55
Query: 65 LKTPKGTRDYGPDSTVVRNQVLDKIVKIFKKHGAVTIDTPIFELKEVLTGKYG 117
LKTPKGTRDY P VR +V D I++ FK+HGA IDTP+FELKE L GKYG
Sbjct: 56 LKTPKGTRDYSPRQMAVREKVFDVIIRCFKRHGAEVIDTPVFELKETLMGKYG 108
>sp|P12081|SYHC_HUMAN Histidine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=HARS PE=1
SV=2
Length = 509
Score = 122 bits (306), Expect = 8e-28, Method: Composition-based stats.
Identities = 63/113 (55%), Positives = 75/113 (66%), Gaps = 6/113 (5%)
Query: 5 APMADIQESIKAQGDVVRKLKSSKAPKEQIDEEVKKLLELKNQLKINDEANEDNSTHKFI 64
A A ++E +K QG+ VR LK KA E I+EEV KLL+LK QL D S KF+
Sbjct: 2 AERAALEELVKLQGERVRGLKQQKASAELIEEEVAKLLKLKAQL------GPDESKQKFV 55
Query: 65 LKTPKGTRDYGPDSTVVRNQVLDKIVKIFKKHGAVTIDTPIFELKEVLTGKYG 117
LKTPKGTRDY P VR +V D I++ FK+HGA IDTP+FELKE L GKYG
Sbjct: 56 LKTPKGTRDYSPRQMAVREKVFDVIIRCFKRHGAEVIDTPVFELKETLMGKYG 108
>sp|Q2KI84|SYHC_BOVIN Histidine--tRNA ligase, cytoplasmic OS=Bos taurus GN=HARS PE=2 SV=1
Length = 509
Score = 121 bits (304), Expect = 1e-27, Method: Composition-based stats.
Identities = 62/113 (54%), Positives = 75/113 (66%), Gaps = 6/113 (5%)
Query: 5 APMADIQESIKAQGDVVRKLKSSKAPKEQIDEEVKKLLELKNQLKINDEANEDNSTHKFI 64
A A +++ ++ QG+ VR LK KA EQI+EEV KLL+LK QL D KF+
Sbjct: 2 ADRAALEDLVRVQGERVRGLKQQKASAEQIEEEVAKLLKLKAQL------GPDEGKPKFV 55
Query: 65 LKTPKGTRDYGPDSTVVRNQVLDKIVKIFKKHGAVTIDTPIFELKEVLTGKYG 117
LKTPKGTRDY P VR +V D I+ FK+HGA IDTP+FELKE LTGKYG
Sbjct: 56 LKTPKGTRDYSPRQMAVREKVFDVIISCFKRHGAEVIDTPVFELKETLTGKYG 108
>sp|P07178|SYHC_MESAU Histidine--tRNA ligase, cytoplasmic OS=Mesocricetus auratus GN=HARS
PE=2 SV=1
Length = 508
Score = 113 bits (283), Expect = 4e-25, Method: Composition-based stats.
Identities = 57/98 (58%), Positives = 66/98 (67%), Gaps = 6/98 (6%)
Query: 20 VVRKLKSSKAPKEQIDEEVKKLLELKNQLKINDEANEDNSTHKFILKTPKGTRDYGPDST 79
+VR LK KA +QI+EEV KLL+LK QL D S KF+LKTPKGTRDY P
Sbjct: 17 LVRGLKQQKASADQIEEEVAKLLKLKAQL------GHDESKQKFVLKTPKGTRDYSPRQM 70
Query: 80 VVRNQVLDKIVKIFKKHGAVTIDTPIFELKEVLTGKYG 117
VR +V D I+ FK+HGA IDTP+FELKE L GKYG
Sbjct: 71 AVREKVFDVIICCFKRHGAEVIDTPVFELKETLMGKYG 108
>sp|P70076|SYHC_TAKRU Histidine--tRNA ligase, cytoplasmic OS=Takifugu rubripes GN=hars
PE=3 SV=1
Length = 519
Score = 105 bits (262), Expect = 1e-22, Method: Composition-based stats.
Identities = 51/85 (60%), Positives = 59/85 (69%), Gaps = 6/85 (7%)
Query: 33 QIDEEVKKLLELKNQLKINDEANEDNSTHKFILKTPKGTRDYGPDSTVVRNQVLDKIVKI 92
QIDEEV KLLELK L D+ H+F+LKT KGTRDY P +R +V + IV
Sbjct: 35 QIDEEVAKLLELKAHL------GGDDGKHQFVLKTAKGTRDYNPKQMAIREKVFNTIVSC 88
Query: 93 FKKHGAVTIDTPIFELKEVLTGKYG 117
FK+HGA TIDTP+FELKE LTGKYG
Sbjct: 89 FKRHGAETIDTPVFELKETLTGKYG 113
>sp|O43011|SYH_SCHPO Histidine--tRNA ligase, mitochondrial OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=hts1 PE=1 SV=2
Length = 563
Score = 103 bits (256), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 57/114 (50%), Positives = 75/114 (65%)
Query: 4 AAPMADIQESIKAQGDVVRKLKSSKAPKEQIDEEVKKLLELKNQLKINDEANEDNSTHKF 63
A + DI E I +QG++VR LKS A KE ID+EV KLL+LKN E + F
Sbjct: 27 ADSLVDINERITSQGNLVRSLKSQGASKEDIDKEVAKLLQLKNLKLGGSEVSGKKKDTSF 86
Query: 64 ILKTPKGTRDYGPDSTVVRNQVLDKIVKIFKKHGAVTIDTPIFELKEVLTGKYG 117
LKTPKGT+D+ V+R + + +IFK+HG VT+DTP+FELKE+L+GKYG
Sbjct: 87 TLKTPKGTKDWCDKDVVLREHIFSTVTEIFKRHGGVTLDTPVFELKEILSGKYG 140
>sp|Q86AS6|SYHC_DICDI Histidine--tRNA ligase, cytoplasmic OS=Dictyostelium discoideum
GN=hisS PE=3 SV=1
Length = 481
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 37/58 (63%), Positives = 46/58 (79%)
Query: 60 THKFILKTPKGTRDYGPDSTVVRNQVLDKIVKIFKKHGAVTIDTPIFELKEVLTGKYG 117
++K LKTPKGT+DY P +R QV D I ++FK+HGAVTI+TP+FELKE LTGKYG
Sbjct: 34 SNKVQLKTPKGTQDYNPRQMTIREQVFDGIKQVFKRHGAVTIETPVFELKETLTGKYG 91
>sp|P34183|SYH_CAEEL Histidine--tRNA ligase OS=Caenorhabditis elegans GN=hrs-1 PE=2 SV=3
Length = 521
Score = 79.3 bits (194), Expect = 8e-15, Method: Composition-based stats.
Identities = 34/56 (60%), Positives = 44/56 (78%)
Query: 62 KFILKTPKGTRDYGPDSTVVRNQVLDKIVKIFKKHGAVTIDTPIFELKEVLTGKYG 117
KF+LKT KGTRDYGP + +RN VL + + F ++GA TIDTP+FEL++VL GKYG
Sbjct: 59 KFVLKTGKGTRDYGPAQSALRNSVLQTVTETFNRYGAETIDTPVFELRDVLMGKYG 114
>sp|P49590|SYHM_HUMAN Probable histidine--tRNA ligase, mitochondrial OS=Homo sapiens
GN=HARS2 PE=1 SV=1
Length = 506
Score = 79.0 bits (193), Expect = 1e-14, Method: Composition-based stats.
Identities = 42/87 (48%), Positives = 53/87 (60%), Gaps = 11/87 (12%)
Query: 31 KEQIDEEVKKLLELKNQLKINDEANEDNSTHKFILKTPKGTRDYGPDSTVVRNQVLDKIV 90
+ Q+ E V L +QLK + E FI+KTPKGTRD P VVR ++LD ++
Sbjct: 34 QSQVAEAV-----LTSQLKAHQEKP------NFIIKTPKGTRDLSPQHMVVREKILDLVI 82
Query: 91 KIFKKHGAVTIDTPIFELKEVLTGKYG 117
FK+HGA +DTP FELKE LT KYG
Sbjct: 83 SCFKRHGAKGMDTPAFELKETLTEKYG 109
>sp|Q5R5E5|SYHM_PONAB Probable histidine--tRNA ligase, mitochondrial OS=Pongo abelii
GN=HARS2 PE=2 SV=1
Length = 506
Score = 78.6 bits (192), Expect = 1e-14, Method: Composition-based stats.
Identities = 42/87 (48%), Positives = 53/87 (60%), Gaps = 11/87 (12%)
Query: 31 KEQIDEEVKKLLELKNQLKINDEANEDNSTHKFILKTPKGTRDYGPDSTVVRNQVLDKIV 90
+ Q+ E V L +QLK + E FI+KTPKGTRD P VVR ++LD ++
Sbjct: 34 QSQVAEAV-----LTSQLKAHQEKP------NFIIKTPKGTRDLSPQHMVVREKILDLVI 82
Query: 91 KIFKKHGAVTIDTPIFELKEVLTGKYG 117
FK+HGA +DTP FELKE LT KYG
Sbjct: 83 SCFKRHGAKGMDTPAFELKETLTEKYG 109
>sp|A5D7V9|SYHM_BOVIN Probable histidine--tRNA ligase, mitochondrial OS=Bos taurus
GN=HARS2 PE=2 SV=1
Length = 506
Score = 78.2 bits (191), Expect = 2e-14, Method: Composition-based stats.
Identities = 38/72 (52%), Positives = 48/72 (66%), Gaps = 6/72 (8%)
Query: 46 NQLKINDEANEDNSTHKFILKTPKGTRDYGPDSTVVRNQVLDKIVKIFKKHGAVTIDTPI 105
+QLK + E + F +KTPKGTRD P VVR ++LD +V FK+HGA +DTP
Sbjct: 44 SQLKPHQEKS------NFTIKTPKGTRDLSPQQMVVREKILDVVVSCFKRHGAKGLDTPA 97
Query: 106 FELKEVLTGKYG 117
FELKE+LT KYG
Sbjct: 98 FELKEILTEKYG 109
>sp|Q99KK9|SYHM_MOUSE Probable histidine--tRNA ligase, mitochondrial OS=Mus musculus
GN=Hars2 PE=2 SV=1
Length = 505
Score = 77.8 bits (190), Expect = 2e-14, Method: Composition-based stats.
Identities = 39/80 (48%), Positives = 50/80 (62%), Gaps = 6/80 (7%)
Query: 37 EVKKLLELKNQLKINDEANEDNSTHKFILKTPKGTRDYGPDSTVVRNQVLDKIVKIFKKH 96
+V K + QLK + E F++K PKGTRD P VVR ++LDKI+ FK+H
Sbjct: 34 QVAKAVLTSEQLKSHQEKP------NFVIKVPKGTRDLSPQQMVVREKILDKIISCFKRH 87
Query: 97 GAVTIDTPIFELKEVLTGKY 116
GA +DTP FELKE+LT KY
Sbjct: 88 GAKGLDTPAFELKEMLTEKY 107
>sp|P07263|SYH_YEAST Histidine--tRNA ligase, mitochondrial OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=HTS1 PE=1 SV=2
Length = 546
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 39/94 (41%), Positives = 53/94 (56%), Gaps = 26/94 (27%)
Query: 24 LKSSKAPKEQIDEEVKKLLELKNQLKINDEANEDNSTHKFILKTPKGTRDYGPDSTVVRN 83
LK+SKAPK K +L+++ LKTPKGT+D+ V+R
Sbjct: 40 LKASKAPK-------------KGKLQVS-------------LKTPKGTKDWADSDMVIRE 73
Query: 84 QVLDKIVKIFKKHGAVTIDTPIFELKEVLTGKYG 117
+ + +FKKHG VTIDTP+FEL+E+L GKYG
Sbjct: 74 AIFSTLSGLFKKHGGVTIDTPVFELREILAGKYG 107
>sp|P93422|SYH_ORYSJ Histidine--tRNA ligase OS=Oryza sativa subsp. japonica
GN=Os05g0150900 PE=2 SV=2
Length = 788
Score = 70.9 bits (172), Expect = 3e-12, Method: Composition-based stats.
Identities = 35/83 (42%), Positives = 51/83 (61%), Gaps = 4/83 (4%)
Query: 35 DEEVKKLLELKNQLKINDEANEDNSTHKFILKTPKGTRDYGPDSTVVRNQVLDKIVKIFK 94
D + +L+ L +++K E NE + + K PKGTRD+G + +R I +FK
Sbjct: 327 DPKCPRLVSLVDKVKEIVETNE----VRRLPKIPKGTRDFGKEQMAIREHAFSIITGVFK 382
Query: 95 KHGAVTIDTPIFELKEVLTGKYG 117
HGAV++DTP+FEL+E L GKYG
Sbjct: 383 MHGAVSLDTPVFELRETLMGKYG 405
>sp|Q6E6B4|SYHC_ANTLO Probable histidine--tRNA ligase, cytoplasmic OS=Antonospora
locustae PE=3 SV=1
Length = 445
Score = 69.3 bits (168), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 28/53 (52%), Positives = 37/53 (69%)
Query: 65 LKTPKGTRDYGPDSTVVRNQVLDKIVKIFKKHGAVTIDTPIFELKEVLTGKYG 117
L+TPKGT DYGP + N+ L + ++F+ HGA IDTP FEL+E+L KYG
Sbjct: 3 LRTPKGTHDYGPRECYLLNRFLRAVTEVFETHGAACIDTPTFELRELLCNKYG 55
>sp|C4V9J0|SYHC_NOSCE Probable histidine--tRNA ligase, cytoplasmic OS=Nosema ceranae
(strain BRL01) GN=NCER_101238 PE=3 SV=1
Length = 430
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/53 (58%), Positives = 37/53 (69%)
Query: 65 LKTPKGTRDYGPDSTVVRNQVLDKIVKIFKKHGAVTIDTPIFELKEVLTGKYG 117
LKTPKGT D PD +V ++D+ IFK HGAV IDTP+FELK +L KYG
Sbjct: 3 LKTPKGTTDLNPDDALVYEDLIDRTKNIFKLHGAVPIDTPVFELKSILLNKYG 55
>sp|Q8SRR3|SYHC_ENCCU Probable histidine--tRNA ligase, cytoplasmic OS=Encephalitozoon
cuniculi (strain GB-M1) GN=ECU06_0620 PE=3 SV=1
Length = 435
Score = 59.3 bits (142), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 36/53 (67%)
Query: 65 LKTPKGTRDYGPDSTVVRNQVLDKIVKIFKKHGAVTIDTPIFELKEVLTGKYG 117
LKTPKGT D P + +++++I ++F +GAV I TP FE+K +LT KYG
Sbjct: 4 LKTPKGTMDESPRQCFLHEEIIERIRRVFVLYGAVPISTPTFEMKSILTNKYG 56
>sp|Q11RN9|SYH_CYTH3 Histidine--tRNA ligase OS=Cytophaga hutchinsonii (strain ATCC 33406
/ NCIMB 9469) GN=hisS PE=3 SV=1
Length = 453
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 33/50 (66%)
Query: 68 PKGTRDYGPDSTVVRNQVLDKIVKIFKKHGAVTIDTPIFELKEVLTGKYG 117
PKGTRD+GP + R +L I +IF K+G + I+TP E VLTGKYG
Sbjct: 7 PKGTRDFGPAQMLKRQYLLQTIREIFTKYGFLPIETPAMENLSVLTGKYG 56
>sp|Q7NHH9|SYH_GLOVI Histidine--tRNA ligase OS=Gloeobacter violaceus (strain PCC 7421)
GN=hisS PE=3 SV=1
Length = 467
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/53 (45%), Positives = 32/53 (60%)
Query: 65 LKTPKGTRDYGPDSTVVRNQVLDKIVKIFKKHGAVTIDTPIFELKEVLTGKYG 117
L T GTRD+ PD + R V+D + IF+K+G ++TP E E L GKYG
Sbjct: 4 LGTMGGTRDFLPDEMIRREYVIDTLKTIFRKYGFEPLETPAIERWETLAGKYG 56
>sp|Q9YEB2|SYH_AERPE Histidine--tRNA ligase OS=Aeropyrum pernix (strain ATCC 700893 /
DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=hisS PE=3
SV=2
Length = 435
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 35/52 (67%)
Query: 66 KTPKGTRDYGPDSTVVRNQVLDKIVKIFKKHGAVTIDTPIFELKEVLTGKYG 117
+ P+G RD+ P+ ++R ++L ++ ++F+ +G +DTP E E L+GKYG
Sbjct: 7 RPPRGFRDFPPEVMILRKRLLSRLERVFESYGFDPLDTPAVEYWETLSGKYG 58
>sp|A0M0E2|SYH_GRAFK Histidine--tRNA ligase OS=Gramella forsetii (strain KT0803) GN=hisS
PE=3 SV=1
Length = 456
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 28/50 (56%)
Query: 68 PKGTRDYGPDSTVVRNQVLDKIVKIFKKHGAVTIDTPIFELKEVLTGKYG 117
PKGTRD+ P+ RN + + I FK G I+TP FE L GKYG
Sbjct: 8 PKGTRDFSPEEVAKRNYIFNTIQTEFKGFGFQPIETPSFENSSTLMGKYG 57
>sp|A6LIF7|SYH_PARD8 Histidine--tRNA ligase OS=Parabacteroides distasonis (strain ATCC
8503 / DSM 20701 / NCTC 11152) GN=hisS PE=3 SV=1
Length = 451
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 29/50 (58%)
Query: 68 PKGTRDYGPDSTVVRNQVLDKIVKIFKKHGAVTIDTPIFELKEVLTGKYG 117
PKGTRD+ P+ RN + + I ++F +G I+TP E L GKYG
Sbjct: 7 PKGTRDFSPEEMAKRNYIFNTIREVFHLYGFQQIETPAMENLSTLMGKYG 56
>sp|B1L6B4|SYH_KORCO Histidine--tRNA ligase OS=Korarchaeum cryptofilum (strain OPF8)
GN=hisS PE=3 SV=1
Length = 428
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 34/54 (62%)
Query: 64 ILKTPKGTRDYGPDSTVVRNQVLDKIVKIFKKHGAVTIDTPIFELKEVLTGKYG 117
++ P+G RD+ P ++R +VL KI +IF+++G I+TP E E + GK G
Sbjct: 1 MVSIPRGFRDFPPPMMILRKRVLSKIEEIFRRYGFDPIETPSLEYWETVKGKLG 54
>sp|P60920|SYH_TREDE Histidine--tRNA ligase OS=Treponema denticola (strain ATCC 35405 /
CIP 103919 / DSM 14222) GN=hisS PE=3 SV=1
Length = 448
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 32/52 (61%)
Query: 66 KTPKGTRDYGPDSTVVRNQVLDKIVKIFKKHGAVTIDTPIFELKEVLTGKYG 117
K KG RD+ P + R +++++VK+F+ +G V IDTP E E+L K G
Sbjct: 8 KVLKGFRDFLPADEIERALLMERLVKVFRDYGFVPIDTPALEYSEILLRKSG 59
>sp|B6YS23|SYH_AZOPC Histidine--tRNA ligase OS=Azobacteroides pseudotrichonymphae
genomovar. CFP2 GN=hisS PE=3 SV=1
Length = 458
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 28/53 (52%)
Query: 65 LKTPKGTRDYGPDSTVVRNQVLDKIVKIFKKHGAVTIDTPIFELKEVLTGKYG 117
L PKGTRD+ P RN + D I +F +G I+TP E L GKYG
Sbjct: 4 LSIPKGTRDFTPCEMDKRNYIFDTIRSVFYLYGFKQIETPALENLSTLLGKYG 56
>sp|Q7UZ20|SYH_RHOBA Histidine--tRNA ligase OS=Rhodopirellula baltica (strain SH1)
GN=hisS PE=3 SV=1
Length = 442
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 30/50 (60%)
Query: 66 KTPKGTRDYGPDSTVVRNQVLDKIVKIFKKHGAVTIDTPIFELKEVLTGK 115
+T KG RDY P + + R Q++ ++F+ G IDTP E E+LTGK
Sbjct: 5 RTLKGFRDYLPAAMIPREQLMQTAREVFRSFGFAPIDTPTLEHLEILTGK 54
>sp|Q2T9L8|SYMC_BOVIN Methionine--tRNA ligase, cytoplasmic OS=Bos taurus GN=MARS PE=2
SV=1
Length = 898
Score = 46.2 bits (108), Expect = 7e-05, Method: Composition-based stats.
Identities = 23/52 (44%), Positives = 35/52 (67%), Gaps = 2/52 (3%)
Query: 1 MSSAAP--MADIQESIKAQGDVVRKLKSSKAPKEQIDEEVKKLLELKNQLKI 50
+++A P + + E + QG++VR+LK+ KA K QI EV KLL+LK QL +
Sbjct: 832 LTTAGPQQIQALTEEVTKQGNIVRELKAQKADKNQIAAEVAKLLDLKKQLAL 883
>sp|P28668|SYEP_DROME Bifunctional glutamate/proline--tRNA ligase OS=Drosophila
melanogaster GN=Aats-glupro PE=1 SV=2
Length = 1714
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 32/49 (65%)
Query: 1 MSSAAPMADIQESIKAQGDVVRKLKSSKAPKEQIDEEVKKLLELKNQLK 49
+SS+ +++ I QGD+VR LKS KA K+QID VKKLL LK K
Sbjct: 739 VSSSGQASELDSQISQQGDLVRDLKSKKAAKDQIDVAVKKLLALKADYK 787
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 30/47 (63%)
Query: 3 SAAPMADIQESIKAQGDVVRKLKSSKAPKEQIDEEVKKLLELKNQLK 49
S + + + I+AQGD +RKLKS KA K ID EVK LL LK + K
Sbjct: 1041 SGSDVGSVLSKIQAQGDKIRKLKSEKAAKNVIDPEVKTLLALKGEYK 1087
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/40 (57%), Positives = 26/40 (65%)
Query: 10 IQESIKAQGDVVRKLKSSKAPKEQIDEEVKKLLELKNQLK 49
+ SI QGD+VR LK KA K +ID VK LLELK Q K
Sbjct: 820 VNASIVKQGDLVRDLKGKKASKPEIDAAVKTLLELKAQYK 859
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 1 MSSAAPMAD-IQESIKAQGDVVRKLKSSKAPKEQIDEEVKKLLELKNQLK 49
+S A+P D + + I AQG+ VR K +KA KE ID EV KLL LK + K
Sbjct: 1112 VSMASPAKDELTQEINAQGEKVRAAKGNKAAKEVIDAEVAKLLALKAKYK 1161
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 27/43 (62%)
Query: 7 MADIQESIKAQGDVVRKLKSSKAPKEQIDEEVKKLLELKNQLK 49
+A I I AQGD VR+LKS+KA K +D VK LL LK K
Sbjct: 891 VAQILSQITAQGDKVRELKSAKADKATVDAAVKTLLSLKADYK 933
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 24/36 (66%)
Query: 14 IKAQGDVVRKLKSSKAPKEQIDEEVKKLLELKNQLK 49
I QGD +R+LKS+K+ K ++ EVK LL LK K
Sbjct: 977 IAQQGDKIRQLKSAKSEKSLVEAEVKLLLALKTDYK 1012
>sp|Q8A6N7|SYH_BACTN Histidine--tRNA ligase OS=Bacteroides thetaiotaomicron (strain ATCC
29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482) GN=hisS
PE=3 SV=1
Length = 454
Score = 45.8 bits (107), Expect = 1e-04, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 28/50 (56%)
Query: 68 PKGTRDYGPDSTVVRNQVLDKIVKIFKKHGAVTIDTPIFELKEVLTGKYG 117
PKGTRD+ P RN + + I ++ +G I+TP E+ L GKYG
Sbjct: 8 PKGTRDFSPVEMAKRNYIFNTIRDVYHLYGFQQIETPSMEMLSTLMGKYG 57
>sp|Q5LAE0|SYH_BACFN Histidine--tRNA ligase OS=Bacteroides fragilis (strain ATCC 25285 /
NCTC 9343) GN=hisS PE=3 SV=1
Length = 454
Score = 45.8 bits (107), Expect = 1e-04, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 28/50 (56%)
Query: 68 PKGTRDYGPDSTVVRNQVLDKIVKIFKKHGAVTIDTPIFELKEVLTGKYG 117
PKGTRD+ P RN + + I ++ +G I+TP E+ L GKYG
Sbjct: 8 PKGTRDFSPVEMAKRNYIFNTIRDVYHLYGFQQIETPSMEMLSTLMGKYG 57
>sp|A5F9R5|SYH_FLAJ1 Histidine--tRNA ligase OS=Flavobacterium johnsoniae (strain ATCC
17061 / DSM 2064 / UW101) GN=hisS PE=3 SV=1
Length = 475
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 28/50 (56%)
Query: 68 PKGTRDYGPDSTVVRNQVLDKIVKIFKKHGAVTIDTPIFELKEVLTGKYG 117
PKGTRD+ P R ++ I F+K G I+TP FE + L GKYG
Sbjct: 8 PKGTRDFSPAEVSKRQYIIQTIKANFEKFGFQPIETPSFENSDTLMGKYG 57
>sp|P07814|SYEP_HUMAN Bifunctional glutamate/proline--tRNA ligase OS=Homo sapiens GN=EPRS
PE=1 SV=5
Length = 1512
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 31/38 (81%)
Query: 12 ESIKAQGDVVRKLKSSKAPKEQIDEEVKKLLELKNQLK 49
+ + +QG+VVRKLK+ KAPK+Q+D V++LL+LK Q K
Sbjct: 906 DKVASQGEVVRKLKTEKAPKDQVDIAVQELLQLKAQYK 943
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/36 (58%), Positives = 27/36 (75%)
Query: 14 IKAQGDVVRKLKSSKAPKEQIDEEVKKLLELKNQLK 49
+ QGDVVR+LK+ KAPKE +D VK+LL LK + K
Sbjct: 757 VAVQGDVVRELKAKKAPKEDVDAAVKQLLSLKAEYK 792
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 30/40 (75%)
Query: 10 IQESIKAQGDVVRKLKSSKAPKEQIDEEVKKLLELKNQLK 49
+ + + AQG+VVRKLK+ K+PK +I+E V+ LL LK Q K
Sbjct: 826 LYDEVAAQGEVVRKLKAEKSPKAKINEAVECLLSLKAQYK 865
>sp|Q64QS2|SYH_BACFR Histidine--tRNA ligase OS=Bacteroides fragilis (strain YCH46)
GN=hisS PE=3 SV=1
Length = 454
Score = 45.8 bits (107), Expect = 1e-04, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 28/50 (56%)
Query: 68 PKGTRDYGPDSTVVRNQVLDKIVKIFKKHGAVTIDTPIFELKEVLTGKYG 117
PKGTRD+ P RN + + I ++ +G I+TP E+ L GKYG
Sbjct: 8 PKGTRDFSPVEMAKRNYIFNTIRDVYHLYGFQQIETPSMEMLSTLMGKYG 57
>sp|Q7MTB3|SYH_PORGI Histidine--tRNA ligase OS=Porphyromonas gingivalis (strain ATCC
BAA-308 / W83) GN=hisS PE=3 SV=1
Length = 454
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 28/50 (56%)
Query: 68 PKGTRDYGPDSTVVRNQVLDKIVKIFKKHGAVTIDTPIFELKEVLTGKYG 117
PKG RD+ P RN + D I ++++ G I+TP E+ L GKYG
Sbjct: 7 PKGMRDFSPVEMSRRNYIFDTIREVYELFGFNQIETPTMEMLSTLMGKYG 56
>sp|Q638Q6|SYH1_BACCZ Histidine--tRNA ligase 1 OS=Bacillus cereus (strain ZK / E33L)
GN=hisS1 PE=3 SV=1
Length = 425
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 34/53 (64%)
Query: 65 LKTPKGTRDYGPDSTVVRNQVLDKIVKIFKKHGAVTIDTPIFELKEVLTGKYG 117
+K KGT+DY P+ V+RN++ F+++G +++TP + E+++ KYG
Sbjct: 3 MKNVKGTKDYLPEEQVLRNKIKRACEDTFERYGCKSLETPTLNMYELMSYKYG 55
>sp|P60922|SYH_NANEQ Histidine--tRNA ligase OS=Nanoarchaeum equitans (strain Kin4-M)
GN=hisS PE=3 SV=1
Length = 404
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 33/50 (66%)
Query: 68 PKGTRDYGPDSTVVRNQVLDKIVKIFKKHGAVTIDTPIFELKEVLTGKYG 117
P+GT+D+ P+ ++ +++ KI +++K+G I TPI E + L GKYG
Sbjct: 5 PRGTKDFTPELAILWKEIVSKIESVYQKYGFDPIITPIVEYWDTLKGKYG 54
>sp|Q68FL6|SYMC_MOUSE Methionine--tRNA ligase, cytoplasmic OS=Mus musculus GN=Mars PE=2
SV=1
Length = 902
Score = 45.1 bits (105), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/63 (38%), Positives = 37/63 (58%), Gaps = 9/63 (14%)
Query: 10 IQESIKAQGDVVRKLKSSKAPKEQIDEEVKKLLELKNQLKINDEANEDNSTHKFILKTPK 69
+ + + QG+VVR+LK+ KA K Q+ EV KLL+LK QL + + ++TPK
Sbjct: 847 LTDEVTKQGNVVRELKAQKADKNQVAAEVAKLLDLKKQLALAEGKP---------IETPK 897
Query: 70 GTR 72
G +
Sbjct: 898 GKK 900
>sp|P23612|SYWC_RABIT Tryptophan--tRNA ligase, cytoplasmic OS=Oryctolagus cuniculus
GN=WARS PE=2 SV=3
Length = 475
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 32/47 (68%), Gaps = 1/47 (2%)
Query: 3 SAAPMADIQESIKAQGDVVRKLKSSKAPKEQIDEEVKKLLELKNQLK 49
A+P ++ SI AQG++V+ LK+ KAPKE+ID VK LL LK K
Sbjct: 10 CASPQ-ELFSSIAAQGELVKSLKARKAPKEEIDSAVKMLLSLKTSYK 55
>sp|Q8CGC7|SYEP_MOUSE Bifunctional glutamate/proline--tRNA ligase OS=Mus musculus GN=Eprs
PE=1 SV=4
Length = 1512
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/36 (61%), Positives = 27/36 (75%)
Query: 14 IKAQGDVVRKLKSSKAPKEQIDEEVKKLLELKNQLK 49
+ QGDVVR+LK+ KAPKE ID VK+LL LK + K
Sbjct: 757 VAVQGDVVRELKAKKAPKEDIDAAVKQLLTLKAEYK 792
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 29/38 (76%)
Query: 12 ESIKAQGDVVRKLKSSKAPKEQIDEEVKKLLELKNQLK 49
+ + QG+VVRKLK+ KA K+Q+D V++LL+LK Q K
Sbjct: 906 DRVACQGEVVRKLKAEKASKDQVDSAVQELLQLKAQYK 943
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 27/36 (75%)
Query: 14 IKAQGDVVRKLKSSKAPKEQIDEEVKKLLELKNQLK 49
+ AQG+VVRKLK+ KAPK ++ E V+ LL LK + K
Sbjct: 830 VAAQGEVVRKLKAEKAPKAKVTEAVECLLSLKAEYK 865
>sp|P62367|SYH1_BACC1 Histidine--tRNA ligase 1 OS=Bacillus cereus (strain ATCC 10987)
GN=hisS1 PE=3 SV=1
Length = 436
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 33/53 (62%)
Query: 65 LKTPKGTRDYGPDSTVVRNQVLDKIVKIFKKHGAVTIDTPIFELKEVLTGKYG 117
+K KGT+DY P+ V+RN++ F+++G ++TP + E+++ KYG
Sbjct: 3 MKNVKGTKDYLPEEQVLRNKIKRACEDTFERYGCKPLETPTLNMYELMSYKYG 55
>sp|P23381|SYWC_HUMAN Tryptophan--tRNA ligase, cytoplasmic OS=Homo sapiens GN=WARS PE=1
SV=2
Length = 471
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 45/90 (50%), Gaps = 11/90 (12%)
Query: 2 SSAAPMADIQESIKAQGDVVRKLKSSKAPKEQIDEEVKKLLELKNQLKINDEANEDNSTH 61
S A + ++ SI QG++VR LK+ A K++ID VK L+ LK K A ED
Sbjct: 4 SEPASLLELFNSIATQGELVRSLKAGNASKDEIDSAVKMLVSLKMSYKA--AAGED---- 57
Query: 62 KFILKTPKG----TRDYGPDSTVVRNQVLD 87
+ P G T ++GPD+T +D
Sbjct: 58 -YKADCPPGNPAPTSNHGPDATEAEEDFVD 86
>sp|Q6HG86|SYH1_BACHK Histidine--tRNA ligase 1 OS=Bacillus thuringiensis subsp. konkukian
(strain 97-27) GN=hisS1 PE=3 SV=1
Length = 425
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 33/53 (62%)
Query: 65 LKTPKGTRDYGPDSTVVRNQVLDKIVKIFKKHGAVTIDTPIFELKEVLTGKYG 117
++ KGT+DY P+ V+RN++ F+++G ++TP + E+++ KYG
Sbjct: 3 MRNVKGTKDYLPEEQVLRNKIKRACEDTFERYGCKPLETPTLNMYELMSYKYG 55
>sp|Q81B71|SYH1_BACCR Histidine--tRNA ligase 1 OS=Bacillus cereus (strain ATCC 14579 /
DSM 31) GN=hisS-1 PE=3 SV=1
Length = 426
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 33/53 (62%)
Query: 65 LKTPKGTRDYGPDSTVVRNQVLDKIVKIFKKHGAVTIDTPIFELKEVLTGKYG 117
++ KGT+DY P+ V+RN++ F+++G ++TP + E+++ KYG
Sbjct: 4 MRNVKGTKDYLPEEQVLRNKIKRACEDTFERYGCKPLETPTLNMYELMSYKYG 56
>sp|A6KXA6|SYH_BACV8 Histidine--tRNA ligase OS=Bacteroides vulgatus (strain ATCC 8482 /
DSM 1447 / NCTC 11154) GN=hisS PE=3 SV=1
Length = 454
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 26/50 (52%)
Query: 68 PKGTRDYGPDSTVVRNQVLDKIVKIFKKHGAVTIDTPIFELKEVLTGKYG 117
PKGTRD+ P RN + + I +F G I+TP E L GKYG
Sbjct: 8 PKGTRDFSPVEMAKRNYIFNTIRDVFHLFGYQQIETPSMENLSTLMGKYG 57
>sp|P32921|SYWC_MOUSE Tryptophan--tRNA ligase, cytoplasmic OS=Mus musculus GN=Wars PE=1
SV=2
Length = 481
Score = 42.7 bits (99), Expect = 9e-04, Method: Composition-based stats.
Identities = 22/48 (45%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 2 SSAAPMADIQESIKAQGDVVRKLKSSKAPKEQIDEEVKKLLELKNQLK 49
S +P+ ++ SI QG++VR LK+ APK++ID VK LL LK K
Sbjct: 9 SCTSPL-ELFNSIATQGELVRSLKAGNAPKDEIDSAVKMLLSLKMSYK 55
>sp|P56192|SYMC_HUMAN Methionine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=MARS PE=1
SV=2
Length = 900
Score = 42.7 bits (99), Expect = 9e-04, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 35/52 (67%), Gaps = 2/52 (3%)
Query: 1 MSSAAP--MADIQESIKAQGDVVRKLKSSKAPKEQIDEEVKKLLELKNQLKI 50
+++A P + + + + QG++VR+LK+ KA K ++ EV KLL+LK QL +
Sbjct: 834 VTTAKPQQIQALMDEVTKQGNIVRELKAQKADKNEVAAEVAKLLDLKKQLAV 885
>sp|Q5R4J1|SYWC_PONAB Tryptophan--tRNA ligase, cytoplasmic OS=Pongo abelii GN=WARS PE=2
SV=2
Length = 472
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Query: 13 SIKAQGDVVRKLKSSKAPKEQIDEEVKKLLELKNQLKINDEANEDNSTHKFILKTPKGTR 72
SI QG++VR LK+ A K++ID VK LL LK K A ++ P T
Sbjct: 16 SIATQGELVRSLKAGNASKDEIDSAVKMLLSLKMSYK---AAMGEDYKANCPPGNPAPTS 72
Query: 73 DYGPDSTVVRNQVLD 87
++GPD+T +D
Sbjct: 73 NHGPDATEAEEDFVD 87
>sp|Q6P7B0|SYWC_RAT Tryptophan--tRNA ligase, cytoplasmic OS=Rattus norvegicus GN=Wars
PE=1 SV=2
Length = 481
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 22/48 (45%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Query: 2 SSAAPMADIQESIKAQGDVVRKLKSSKAPKEQIDEEVKKLLELKNQLK 49
S +P+ ++ SI AQG++VR LK+ APK++I+ VK LL LK K
Sbjct: 9 SCTSPL-ELFNSIAAQGELVRSLKAGNAPKDEIESAVKMLLSLKMNYK 55
>sp|A9A947|SYH_METM6 Histidine--tRNA ligase OS=Methanococcus maripaludis (strain C6 /
ATCC BAA-1332) GN=hisS PE=3 SV=1
Length = 418
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 31/55 (56%)
Query: 63 FILKTPKGTRDYGPDSTVVRNQVLDKIVKIFKKHGAVTIDTPIFELKEVLTGKYG 117
+ + PKGTRD+ P+ R + K+ K+F + I+TP FE E+L+ K G
Sbjct: 2 LMFQKPKGTRDFLPEEMKKRKNIEKKLRKVFDSYNFSEINTPTFESFELLSKKTG 56
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.131 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,548,322
Number of Sequences: 539616
Number of extensions: 2231751
Number of successful extensions: 9951
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 246
Number of HSP's successfully gapped in prelim test: 102
Number of HSP's that attempted gapping in prelim test: 9657
Number of HSP's gapped (non-prelim): 386
length of query: 151
length of database: 191,569,459
effective HSP length: 107
effective length of query: 44
effective length of database: 133,830,547
effective search space: 5888544068
effective search space used: 5888544068
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 56 (26.2 bits)