Query psy1231
Match_columns 151
No_of_seqs 244 out of 1229
Neff 5.9
Searched_HMMs 46136
Date Fri Aug 16 15:46:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1231.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1231hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1936|consensus 99.9 4E-27 8.7E-32 204.7 8.6 135 7-145 6-147 (518)
2 COG0124 HisS Histidyl-tRNA syn 99.7 3E-18 6.6E-23 150.4 4.0 87 63-149 2-99 (429)
3 PLN02972 Histidyl-tRNA synthet 99.7 1.3E-17 2.8E-22 154.3 6.7 124 8-145 284-414 (763)
4 PLN02530 histidine-tRNA ligase 99.6 4.5E-16 9.6E-21 138.1 4.4 88 60-147 65-160 (487)
5 PRK12292 hisZ ATP phosphoribos 99.5 3.1E-15 6.8E-20 129.2 3.5 84 64-147 2-94 (391)
6 PRK12421 ATP phosphoribosyltra 99.5 3.7E-15 8E-20 129.2 3.3 80 65-144 7-95 (392)
7 PRK12420 histidyl-tRNA synthet 99.5 7.6E-15 1.6E-19 127.7 4.5 84 63-146 2-95 (423)
8 CHL00201 syh histidine-tRNA sy 99.5 7.6E-15 1.7E-19 128.4 3.8 82 65-146 4-96 (430)
9 PRK12293 hisZ ATP phosphoribos 99.5 1.1E-14 2.5E-19 121.4 2.8 82 65-146 5-90 (281)
10 TIGR00442 hisS histidyl-tRNA s 99.3 1E-12 2.3E-17 112.9 3.9 82 66-147 1-93 (397)
11 PF13393 tRNA-synt_His: Histid 99.3 6E-13 1.3E-17 110.5 2.0 77 70-146 1-84 (311)
12 PRK00037 hisS histidyl-tRNA sy 99.3 1.5E-12 3.3E-17 112.2 3.7 84 63-146 2-96 (412)
13 cd00938 HisRS_RNA HisRS_RNA bi 99.3 8.7E-12 1.9E-16 77.8 4.7 42 9-50 2-43 (45)
14 cd00939 MetRS_RNA MetRS_RNA bi 99.2 1.9E-11 4.2E-16 76.3 4.1 41 10-50 1-41 (45)
15 COG3705 HisZ ATP phosphoribosy 99.1 1.5E-11 3.2E-16 107.1 2.6 81 63-143 1-89 (390)
16 PLN02734 glycyl-tRNA synthetas 99.1 4.1E-10 9E-15 103.8 8.9 112 6-118 8-148 (684)
17 TIGR00443 hisZ_biosyn_reg ATP 99.1 6.5E-11 1.4E-15 99.5 2.8 72 72-144 1-80 (314)
18 PF00458 WHEP-TRS: WHEP-TRS do 99.1 2.9E-10 6.2E-15 74.3 4.8 41 10-50 1-41 (56)
19 cd00774 GlyRS-like_core Glycyl 98.9 9.4E-10 2E-14 90.2 3.4 85 64-149 17-107 (254)
20 PRK00413 thrS threonyl-tRNA sy 98.8 2.9E-09 6.2E-14 96.8 4.3 112 29-145 223-345 (638)
21 PRK12295 hisZ ATP phosphoribos 98.7 3.3E-09 7.2E-14 91.8 1.7 65 80-144 5-77 (373)
22 cd00779 ProRS_core_prok Prolyl 98.7 2E-08 4.4E-13 82.4 4.5 55 63-118 15-69 (255)
23 cd00773 HisRS-like_core Class 98.6 2.2E-08 4.7E-13 81.8 1.8 69 78-146 1-77 (261)
24 cd00772 ProRS_core Prolyl-tRNA 98.5 4.1E-08 8.9E-13 81.2 2.1 80 65-145 18-112 (264)
25 PRK12305 thrS threonyl-tRNA sy 98.5 1.1E-07 2.3E-12 85.8 4.3 52 66-118 193-244 (575)
26 PRK12294 hisZ ATP phosphoribos 98.5 5.6E-08 1.2E-12 81.2 2.2 67 77-144 5-80 (272)
27 PRK09194 prolyl-tRNA synthetas 98.4 7.3E-08 1.6E-12 87.2 2.0 53 63-115 31-83 (565)
28 cd00771 ThrRS_core Threonyl-tR 98.4 3E-07 6.5E-12 77.1 4.2 52 66-118 17-68 (298)
29 TIGR00418 thrS threonyl-tRNA s 98.4 2.8E-07 6.2E-12 82.8 4.2 49 67-115 188-236 (563)
30 cd01200 WHEPGMRS_RNA EPRS-like 98.3 7.9E-07 1.7E-11 54.1 4.2 39 12-50 2-40 (42)
31 cd00936 WEPRS_RNA WEPRS_RNA bi 98.3 6E-07 1.3E-11 57.0 3.6 41 10-50 1-41 (50)
32 PRK14799 thrS threonyl-tRNA sy 98.3 2.4E-07 5.2E-12 84.0 2.4 80 66-146 155-243 (545)
33 cd00778 ProRS_core_arch_euk Pr 98.2 1.9E-06 4.1E-11 71.0 4.3 53 65-117 18-70 (261)
34 TIGR00408 proS_fam_I prolyl-tR 98.1 9.1E-07 2E-11 78.8 2.1 80 65-145 24-118 (472)
35 TIGR00409 proS_fam_II prolyl-t 98.1 2.8E-06 6E-11 77.4 4.1 53 63-115 31-83 (568)
36 PRK12444 threonyl-tRNA synthet 98.1 3.2E-06 7E-11 77.5 3.8 52 66-118 261-312 (639)
37 PRK08661 prolyl-tRNA synthetas 97.9 9.5E-06 2.1E-10 72.3 4.3 51 65-115 30-80 (477)
38 PRK12325 prolyl-tRNA synthetas 97.9 1.2E-05 2.6E-10 70.9 4.2 52 66-118 34-85 (439)
39 PLN02908 threonyl-tRNA synthet 97.8 2.2E-05 4.7E-10 72.9 4.5 78 66-144 308-394 (686)
40 cd00670 Gly_His_Pro_Ser_Thr_tR 97.7 1.2E-05 2.7E-10 63.7 1.8 67 79-145 2-81 (235)
41 PRK04173 glycyl-tRNA synthetas 97.7 4.7E-05 1E-09 67.7 4.2 54 64-118 23-78 (456)
42 cd00935 GlyRS_RNA GlyRS_RNA bi 97.7 0.00011 2.5E-09 46.4 4.9 43 8-50 2-44 (51)
43 KOG2298|consensus 97.5 9.7E-05 2.1E-09 66.3 3.7 59 59-118 25-85 (599)
44 PRK04172 pheS phenylalanyl-tRN 97.4 6.5E-05 1.4E-09 67.2 1.9 38 72-109 225-262 (489)
45 COG0423 GRS1 Glycyl-tRNA synth 97.1 0.00039 8.5E-09 63.0 3.5 54 64-118 25-80 (558)
46 TIGR02367 PylS pyrrolysyl-tRNA 96.9 0.00039 8.4E-09 62.0 1.8 67 80-146 240-313 (453)
47 TIGR00389 glyS_dimeric glycyl- 96.7 0.0019 4.1E-08 59.0 4.1 54 64-118 22-76 (551)
48 PF00587 tRNA-synt_2b: tRNA sy 95.8 0.008 1.7E-07 46.0 2.8 37 81-118 1-38 (173)
49 PRK14894 glycyl-tRNA synthetas 95.4 0.015 3.3E-07 52.9 3.4 54 64-118 25-80 (539)
50 cd00770 SerRS_core Seryl-tRNA 95.2 0.023 4.9E-07 47.8 3.9 45 70-114 43-87 (297)
51 PRK09350 poxB regulator PoxA; 94.9 0.021 4.5E-07 48.3 2.8 35 78-112 4-38 (306)
52 cd00776 AsxRS_core Asx tRNA sy 94.8 0.028 6E-07 47.9 3.2 36 74-109 19-54 (322)
53 TIGR00462 genX lysyl-tRNA synt 94.4 0.036 7.8E-07 46.8 3.0 30 80-109 2-31 (304)
54 PRK09537 pylS pyrolysyl-tRNA s 94.3 0.026 5.6E-07 50.2 2.0 32 82-113 206-237 (417)
55 cd00768 class_II_aaRS-like_cor 93.9 0.046 9.9E-07 41.8 2.6 33 82-114 2-34 (211)
56 cd00669 Asp_Lys_Asn_RS_core As 91.8 0.12 2.7E-06 43.0 2.4 30 80-109 2-31 (269)
57 PLN02837 threonine-tRNA ligase 90.8 0.27 5.9E-06 45.4 3.8 49 67-115 235-283 (614)
58 KOG1035|consensus 89.8 0.23 4.9E-06 49.5 2.5 73 72-145 925-1001(1351)
59 TIGR00468 pheS phenylalanyl-tR 87.7 1.7 3.8E-05 36.5 6.2 46 62-109 56-101 (294)
60 COG0441 ThrS Threonyl-tRNA syn 87.5 0.37 8.1E-06 44.6 2.2 50 66-115 207-256 (589)
61 cd00777 AspRS_core Asp tRNA sy 87.4 0.43 9.2E-06 40.0 2.3 29 80-108 2-30 (280)
62 PRK06462 asparagine synthetase 86.5 0.68 1.5E-05 39.7 3.1 35 75-109 26-60 (335)
63 TIGR00414 serS seryl-tRNA synt 86.2 1 2.2E-05 39.8 4.2 45 71-115 165-209 (418)
64 PTZ00417 lysine-tRNA ligase; P 85.5 0.74 1.6E-05 42.6 3.0 32 78-109 252-283 (585)
65 PRK00488 pheS phenylalanyl-tRN 85.3 2.3 5E-05 36.9 5.8 45 62-108 92-136 (339)
66 PRK05159 aspC aspartyl-tRNA sy 85.1 0.89 1.9E-05 40.3 3.3 31 77-107 134-164 (437)
67 cd00775 LysRS_core Lys_tRNA sy 84.6 1 2.2E-05 38.5 3.3 31 79-109 8-38 (329)
68 COG2269 Truncated, possibly in 84.5 1.2 2.6E-05 38.3 3.6 33 77-109 14-46 (322)
69 TIGR00458 aspS_arch aspartyl-t 84.4 1 2.2E-05 40.0 3.3 31 77-107 131-161 (428)
70 cd00677 S15_NS1_EPRS_RNA-bind 84.4 1.6 3.5E-05 26.7 3.3 38 12-49 2-46 (46)
71 PRK12445 lysyl-tRNA synthetase 83.6 1.1 2.3E-05 40.8 3.1 31 78-108 183-213 (505)
72 COG0442 ProS Prolyl-tRNA synth 83.5 1.3 2.7E-05 40.5 3.6 52 62-113 30-81 (500)
73 PF00152 tRNA-synt_2: tRNA syn 83.2 1.1 2.5E-05 37.8 3.0 32 78-109 21-52 (335)
74 KOG1885|consensus 83.2 1 2.2E-05 41.1 2.7 32 78-109 224-255 (560)
75 PRK03932 asnC asparaginyl-tRNA 83.0 1.3 2.7E-05 39.6 3.3 33 77-109 131-163 (450)
76 PRK00484 lysS lysyl-tRNA synth 82.9 1.2 2.6E-05 40.2 3.2 31 77-107 170-200 (491)
77 PLN02603 asparaginyl-tRNA synt 82.6 1.2 2.6E-05 41.1 3.1 32 78-109 225-256 (565)
78 TIGR00499 lysS_bact lysyl-tRNA 82.6 1.2 2.7E-05 40.3 3.1 32 77-108 170-201 (496)
79 PRK03991 threonyl-tRNA synthet 82.5 1.3 2.7E-05 41.3 3.2 46 68-113 216-261 (613)
80 TIGR00459 aspS_bact aspartyl-t 82.2 1.3 2.8E-05 41.1 3.1 31 78-108 137-167 (583)
81 PTZ00385 lysyl-tRNA synthetase 82.0 1.3 2.8E-05 41.7 3.1 30 78-107 232-261 (659)
82 TIGR00457 asnS asparaginyl-tRN 81.4 1.5 3.2E-05 39.3 3.2 32 78-109 135-166 (453)
83 PRK12820 bifunctional aspartyl 81.0 1.6 3.5E-05 41.4 3.4 32 77-108 154-185 (706)
84 PLN02502 lysyl-tRNA synthetase 80.8 1.6 3.4E-05 40.2 3.2 31 78-108 228-258 (553)
85 COG1190 LysU Lysyl-tRNA synthe 80.7 1.7 3.6E-05 39.7 3.2 30 80-109 181-210 (502)
86 PRK05431 seryl-tRNA synthetase 80.3 2.2 4.7E-05 37.8 3.8 46 70-115 161-207 (425)
87 PLN02532 asparagine-tRNA synth 80.2 1.6 3.5E-05 40.8 3.1 34 76-109 232-265 (633)
88 PRK00476 aspS aspartyl-tRNA sy 79.9 1.7 3.7E-05 40.2 3.1 32 77-108 139-170 (588)
89 PRK00960 seryl-tRNA synthetase 78.9 2.2 4.8E-05 39.0 3.5 50 66-115 210-260 (517)
90 PTZ00425 asparagine-tRNA ligas 78.5 2 4.3E-05 39.9 3.1 36 75-110 211-246 (586)
91 PLN02850 aspartate-tRNA ligase 78.5 2.1 4.6E-05 39.1 3.3 28 79-106 225-252 (530)
92 KOG1637|consensus 78.2 2.4 5.3E-05 38.7 3.4 50 66-115 179-228 (560)
93 PRK02983 lysS lysyl-tRNA synth 77.8 2.1 4.5E-05 42.5 3.2 29 79-107 770-798 (1094)
94 PLN02221 asparaginyl-tRNA synt 76.9 2.4 5.3E-05 39.2 3.2 33 77-109 169-201 (572)
95 PTZ00401 aspartyl-tRNA synthet 76.8 2.5 5.5E-05 38.9 3.2 31 78-108 212-242 (550)
96 COG0173 AspS Aspartyl-tRNA syn 76.7 2.2 4.7E-05 39.5 2.8 33 75-107 137-169 (585)
97 COG0016 PheS Phenylalanyl-tRNA 75.7 7.8 0.00017 33.7 5.8 45 62-108 95-139 (335)
98 PLN02903 aminoacyl-tRNA ligase 72.0 3.4 7.4E-05 38.9 2.9 31 77-107 201-232 (652)
99 PLN02320 seryl-tRNA synthetase 70.3 5.6 0.00012 36.4 3.8 50 68-118 220-271 (502)
100 PLN02678 seryl-tRNA synthetase 68.9 6.8 0.00015 35.2 4.0 40 76-115 171-210 (448)
101 TIGR00415 serS_MJ seryl-tRNA s 68.5 6 0.00013 36.3 3.6 50 66-115 210-260 (520)
102 PF05565 Sipho_Gp157: Siphovir 66.6 39 0.00085 25.9 7.4 60 20-109 45-104 (162)
103 KOG0554|consensus 64.6 6.1 0.00013 35.4 2.8 39 73-111 126-164 (446)
104 COG0017 AsnS Aspartyl/asparagi 63.6 7.1 0.00015 35.1 3.0 34 76-109 131-164 (435)
105 KOG2324|consensus 61.6 13 0.00029 33.1 4.3 74 63-136 36-128 (457)
106 cd00496 PheRS_alpha_core Pheny 55.7 11 0.00024 30.0 2.7 28 82-109 3-30 (218)
107 KOG2411|consensus 51.0 14 0.00031 34.2 2.8 36 78-118 177-213 (628)
108 PF01409 tRNA-synt_2d: tRNA sy 46.8 17 0.00037 29.9 2.5 29 80-108 17-45 (247)
109 PF02556 SecB: Preprotein tran 43.4 32 0.00069 25.6 3.4 37 80-116 108-144 (149)
110 KOG3910|consensus 38.3 64 0.0014 30.0 4.9 62 9-91 540-604 (632)
111 PF08984 DUF1858: Domain of un 31.8 31 0.00066 21.9 1.4 17 89-105 17-33 (59)
112 PLN02221 asparaginyl-tRNA synt 28.4 60 0.0013 30.2 3.2 43 6-48 236-278 (572)
113 COG0172 SerS Seryl-tRNA synthe 28.4 80 0.0017 28.5 3.9 45 70-114 165-209 (429)
114 PF10469 AKAP7_NLS: AKAP7 2'5' 28.0 2.5E+02 0.0054 21.8 6.3 73 30-105 54-138 (209)
115 PRK08099 bifunctional DNA-bind 27.2 87 0.0019 27.6 3.9 43 68-112 341-383 (399)
116 PRK11552 putative DNA-binding 26.9 63 0.0014 25.5 2.7 24 79-103 12-35 (225)
117 cd00769 PheRS_beta_core Phenyl 25.8 63 0.0014 25.0 2.5 30 83-112 3-32 (198)
118 PTZ00326 phenylalanyl-tRNA syn 25.4 70 0.0015 29.3 3.0 36 72-107 221-257 (494)
119 COG4904 Uncharacterized protei 25.2 1E+02 0.0023 24.1 3.5 21 84-104 67-87 (174)
120 KOG2509|consensus 24.0 1E+02 0.0023 28.0 3.8 47 68-114 172-220 (455)
121 TIGR03384 betaine_BetI transcr 21.9 1E+02 0.0022 22.7 2.9 25 79-103 7-31 (189)
122 PF08134 cIII: cIII protein fa 21.3 1.3E+02 0.0029 18.4 2.7 24 71-94 12-35 (44)
123 PF12469 DUF3692: CRISPR-assoc 20.8 40 0.00087 24.4 0.5 54 65-118 14-67 (117)
No 1
>KOG1936|consensus
Probab=99.94 E-value=4e-27 Score=204.65 Aligned_cols=135 Identities=44% Similarity=0.607 Sum_probs=121.6
Q ss_pred hHHHHHHHHHhhHHHHhhhcCCCChhhHHHHHHHHHHHHHhhchhhhcccccccCcccccCCCccccCChhhHHHHHHHH
Q psy1231 7 MADIQESIKAQGDVVRKLKSSKAPKEQIDEEVKKLLELKNQLKINDEANEDNSTHKFILKTPKGTRDYGPDSTVVRNQVL 86 (151)
Q Consensus 7 ~~~l~~~i~~qg~~VR~LK~~ka~k~~I~~~V~kLl~LK~ql~~~~~~~~~~~~~~~~~~~pkGtrD~lP~e~~~~~~I~ 86 (151)
...+...++.||+++|.|++++++...|+++|++++++++++.. + +.-.+.++.+++|+|||||.|++|.+|++|+
T Consensus 6 ~~~~~~~~~~~~~llr~l~~~~a~~~~~~~~va~~~~~~~~~~~-~---~~~~~~k~~lKtPKGTrD~~p~qm~lRe~if 81 (518)
T KOG1936|consen 6 LVTTRESISFQGILLRDLKSSCASPEQISEEVALILALKNGLGR-S---GSIFKKKFSLKTPKGTRDFSPEQMALREKIF 81 (518)
T ss_pred HHHHHHHHhhhHHHHhhhhhccCChhHhhHHHHHHHHHhcccCC-C---CCCcCcceeecCCCCCCcCCHHHHHHHHHHH
Confidence 56678899999999999999999999999999999999999854 2 1224678899999999999999999999999
Q ss_pred HHHHHHHHHcCCccccCCccccHHhhhcccCCccc------cc-chhhhhhHHhhCCCcchhhhhc
Q psy1231 87 DKIVKIFKKHGAVTIDTPIFELKEVLTGKYGVYWT------GY-STAVGFLMIHSVPSAPLWINWT 145 (151)
Q Consensus 87 ~~i~~~f~~~Gy~~IeTPv~E~~evf~~~~Ge~~~------~~-~~~~~~~~~~~~~~~~~~~~~~ 145 (151)
+++.++|++||+..|+||+||..++|+++||||++ |+ -.-+.+||+|+||.||+++.++
T Consensus 82 ~~i~~vFkrhGa~~iDTPVFElkeiL~gKYGEdskLiYdlkDQGGEl~SLRYDLTVPfARylAmNk 147 (518)
T KOG1936|consen 82 STIKEVFKRHGAETIDTPVFELKEILTGKYGEDSKLIYDLKDQGGELCSLRYDLTVPFARYLAMNK 147 (518)
T ss_pred HHHHHHHHHcCCeeccccchhHHHHHhhhcccccceeEehhhcCCcEEEeecccccHHHHHHHHcc
Confidence 99999999999999999999999999999999872 22 5567899999999999999884
No 2
>COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.72 E-value=3e-18 Score=150.36 Aligned_cols=87 Identities=26% Similarity=0.376 Sum_probs=79.5
Q ss_pred ccccCCCccccCChhhHHHHHHHHHHHHHHHHHcCCccccCCccccHHhhhcccCCcc---ccc--------chhhhhhH
Q psy1231 63 FILKTPKGTRDYGPDSTVVRNQVLDKIVKIFKKHGAVTIDTPIFELKEVLTGKYGVYW---TGY--------STAVGFLM 131 (151)
Q Consensus 63 ~~~~~pkGtrD~lP~e~~~~~~I~~~i~~~f~~~Gy~~IeTPv~E~~evf~~~~Ge~~---~~~--------~~~~~~~~ 131 (151)
+.++.|+||+|++|+++..|++|+++++++|++|||.+|+||+||++++|.+++|+++ ... .+.+++|.
T Consensus 2 ~~~~~prG~~D~lp~d~~~~~~i~~~~~~v~~~yGf~eI~TPifE~telf~r~~Ge~td~v~kemY~F~Dkggr~laLRp 81 (429)
T COG0124 2 MKIQRPRGTRDFLPEDMALREYIESTIRKVFESYGFSEIRTPIFEYTELFARKSGEETDVVEKEMYTFKDKGGRSLALRP 81 (429)
T ss_pred CCccCCCCccccChHHHHHHHHHHHHHHHHHHHcCCEeccCccccchhHhhhccCCcccccccceEEEEeCCCCEEEecc
Confidence 4578899999999999999999999999999999999999999999999999999862 122 88999999
Q ss_pred HhhCCCcchhhhhccccC
Q psy1231 132 IHSVPSAPLWINWTNHLG 149 (151)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~ 149 (151)
++++|.+|+++++.+.++
T Consensus 82 e~Tapv~R~~~en~~~~~ 99 (429)
T COG0124 82 ELTAPVARAVAENKLDLP 99 (429)
T ss_pred cCcHHHHHHHHhcccccc
Confidence 999999999999887665
No 3
>PLN02972 Histidyl-tRNA synthetase
Probab=99.70 E-value=1.3e-17 Score=154.29 Aligned_cols=124 Identities=27% Similarity=0.399 Sum_probs=100.6
Q ss_pred HHHHHHHHHhhHHHHhhhcCCCChhhHHHHHHHHHHHHHhhchhhhcccccccCcccccCCCccccCChhhHHHHHHHHH
Q psy1231 8 ADIQESIKAQGDVVRKLKSSKAPKEQIDEEVKKLLELKNQLKINDEANEDNSTHKFILKTPKGTRDYGPDSTVVRNQVLD 87 (151)
Q Consensus 8 ~~l~~~i~~qg~~VR~LK~~ka~k~~I~~~V~kLl~LK~ql~~~~~~~~~~~~~~~~~~~pkGtrD~lP~e~~~~~~I~~ 87 (151)
..+......++..++..+..+.....+.+.++++.. . ...++.+++|+||||++|+++..+++|++
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~--------~~~~~~~k~PkGtrD~lP~e~~~re~I~~ 349 (763)
T PLN02972 284 DSLQVLAEWATQLLLLFDPKCPGFDSLVDKVKEIVE------S--------NEVRRLPKIPKGTRDFAKEQMAIREKAFS 349 (763)
T ss_pred hHHHHHHhhccchhhcccccccchhHHHHHHHHhhc------c--------cchhcccCCCCCCccCCHHHHHHHHHHHH
Confidence 335556677777777777776666666666666521 1 11367789999999999999999999999
Q ss_pred HHHHHHHHcCCccccCCccccHHhhhcccCCcccc------c-chhhhhhHHhhCCCcchhhhhc
Q psy1231 88 KIVKIFKKHGAVTIDTPIFELKEVLTGKYGVYWTG------Y-STAVGFLMIHSVPSAPLWINWT 145 (151)
Q Consensus 88 ~i~~~f~~~Gy~~IeTPv~E~~evf~~~~Ge~~~~------~-~~~~~~~~~~~~~~~~~~~~~~ 145 (151)
+++++|++|||.+|+||+||++|+|.+++|+++.. . .+.+++|+++++|.+|+++.+.
T Consensus 350 ~L~~vFk~hGy~eI~TPvfE~~Ell~~k~Ged~k~mY~f~D~gGr~LaLRPDlTvPiAR~vA~n~ 414 (763)
T PLN02972 350 IITSVFKRHGATALDTPVFELRETLMGKYGEDSKLIYDLADQGGELCSLRYDLTVPFARYVAMNG 414 (763)
T ss_pred HHHHHHHHcCCEEccCCcccchHHhhcccCcchhheEEEECCCCCEEEeCCCChHHHHHHHHhCC
Confidence 99999999999999999999999999999987531 1 4578999999999999999764
No 4
>PLN02530 histidine-tRNA ligase
Probab=99.60 E-value=4.5e-16 Score=138.15 Aligned_cols=88 Identities=25% Similarity=0.340 Sum_probs=78.2
Q ss_pred cCcccccCCCccccCChhhHHHHHHHHHHHHHHHHHcCCccccCCccccHHhhhcccCCccccc--------chhhhhhH
Q psy1231 60 THKFILKTPKGTRDYGPDSTVVRNQVLDKIVKIFKKHGAVTIDTPIFELKEVLTGKYGVYWTGY--------STAVGFLM 131 (151)
Q Consensus 60 ~~~~~~~~pkGtrD~lP~e~~~~~~I~~~i~~~f~~~Gy~~IeTPv~E~~evf~~~~Ge~~~~~--------~~~~~~~~ 131 (151)
++.+.+++|+||||++|+++..+++|++.++++|++|||++|+||+||++|+|.++.|+++.+. .+.+++|.
T Consensus 65 ~~~~~~~~p~G~~D~lp~~~~~~~~i~~~~~~~~~~~Gy~~I~tP~lE~~el~~~~~g~~~~~~~y~f~D~~g~~l~LRp 144 (487)
T PLN02530 65 KPKIDVNPPKGTRDFPPEDMRLRNWLFDHFREVSRLFGFEEVDAPVLESEELYIRKAGEEITDQLYNFEDKGGRRVALRP 144 (487)
T ss_pred ccccccCCCCCcCcCCHHHHHHHHHHHHHHHHHHHHcCCEeccccccchHHHhccccCcccccceEEEECCCCCEEecCC
Confidence 4444589999999999999999999999999999999999999999999999999988875432 45799999
Q ss_pred HhhCCCcchhhhhccc
Q psy1231 132 IHSVPSAPLWINWTNH 147 (151)
Q Consensus 132 ~~~~~~~~~~~~~~~~ 147 (151)
+++.|.+|+++...+.
T Consensus 145 D~T~~iaR~~~~~~~~ 160 (487)
T PLN02530 145 ELTPSLARLVLQKGKS 160 (487)
T ss_pred CCcHHHHHHHHhcccc
Confidence 9999999999986554
No 5
>PRK12292 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=99.54 E-value=3.1e-15 Score=129.19 Aligned_cols=84 Identities=17% Similarity=0.265 Sum_probs=73.8
Q ss_pred cccCCCccccCChhhHHHHHHHHHHHHHHHHHcCCccccCCccccHHhhhcccCCccccc---------chhhhhhHHhh
Q psy1231 64 ILKTPKGTRDYGPDSTVVRNQVLDKIVKIFKKHGAVTIDTPIFELKEVLTGKYGVYWTGY---------STAVGFLMIHS 134 (151)
Q Consensus 64 ~~~~pkGtrD~lP~e~~~~~~I~~~i~~~f~~~Gy~~IeTPv~E~~evf~~~~Ge~~~~~---------~~~~~~~~~~~ 134 (151)
.+++|+||||++|+++..+++|++.++++|++|||.+|+||+||++++|.++.|++.... .+.+++|.|++
T Consensus 2 ~~~~p~G~~D~lp~~~~~~~~i~~~l~~~f~~~Gy~~i~tP~lE~~e~~~~~~g~~~~~~~~~f~d~~~g~~l~LRpD~T 81 (391)
T PRK12292 2 MWQLPEGIRDLLPEEARKIEEIRRRLLDLFRRWGYEEVITPTLEYLDTLLAGGGAILDLRTFKLVDQLSGRTLGLRPDMT 81 (391)
T ss_pred CCCCCCcchhcCHHHHHHHHHHHHHHHHHHHHcCCceeeCcchhhHHHHhccCCccchhhhEEEeecCCCCEEEECCCCc
Confidence 357899999999999999999999999999999999999999999999998887654322 34689999999
Q ss_pred CCCcchhhhhccc
Q psy1231 135 VPSAPLWINWTNH 147 (151)
Q Consensus 135 ~~~~~~~~~~~~~ 147 (151)
+|.+|+++...++
T Consensus 82 ~~iaR~~a~~~~~ 94 (391)
T PRK12292 82 AQIARIAATRLAN 94 (391)
T ss_pred HHHHHHHHHhccC
Confidence 9999999876433
No 6
>PRK12421 ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=99.53 E-value=3.7e-15 Score=129.22 Aligned_cols=80 Identities=16% Similarity=0.192 Sum_probs=71.7
Q ss_pred ccCCCccccCChhhHHHHHHHHHHHHHHHHHcCCccccCCccccHHhhhcccCCccc-------cc--chhhhhhHHhhC
Q psy1231 65 LKTPKGTRDYGPDSTVVRNQVLDKIVKIFKKHGAVTIDTPIFELKEVLTGKYGVYWT-------GY--STAVGFLMIHSV 135 (151)
Q Consensus 65 ~~~pkGtrD~lP~e~~~~~~I~~~i~~~f~~~Gy~~IeTPv~E~~evf~~~~Ge~~~-------~~--~~~~~~~~~~~~ 135 (151)
.++|+||||++|+++..+++|++.++++|++|||.+|+||+||++|+|.++.|++.. |. .+.+++|.+.++
T Consensus 7 ~~~p~G~rD~lp~e~~~~~~i~~~l~~~f~~~Gy~~I~tP~~E~~e~~~~~~g~~~~~~~y~f~D~~~g~~l~LRpD~T~ 86 (392)
T PRK12421 7 WLLPDGVADVLPEEAQKIERLRRRLLDLFASRGYQLVMPPLIEYLESLLTGAGQDLKLQTFKLIDQLSGRLMGVRADITP 86 (392)
T ss_pred cCCCCcccccCHHHHHHHHHHHHHHHHHHHHcCCEEeeCcchhhHHHHhccCCccchhceEEEEcCCCCcEEEECCcCCH
Confidence 468999999999999999999999999999999999999999999999998887542 21 356899999999
Q ss_pred CCcchhhhh
Q psy1231 136 PSAPLWINW 144 (151)
Q Consensus 136 ~~~~~~~~~ 144 (151)
|.+|+++..
T Consensus 87 ~iaR~~a~~ 95 (392)
T PRK12421 87 QVARIDAHL 95 (392)
T ss_pred HHHHHHHhh
Confidence 999998765
No 7
>PRK12420 histidyl-tRNA synthetase; Provisional
Probab=99.52 E-value=7.6e-15 Score=127.74 Aligned_cols=84 Identities=24% Similarity=0.430 Sum_probs=72.5
Q ss_pred ccccCCCccccCChhhHHHHHHHHHHHHHHHHHcCCccccCCccccHHhhhcccC--Cccccc--------chhhhhhHH
Q psy1231 63 FILKTPKGTRDYGPDSTVVRNQVLDKIVKIFKKHGAVTIDTPIFELKEVLTGKYG--VYWTGY--------STAVGFLMI 132 (151)
Q Consensus 63 ~~~~~pkGtrD~lP~e~~~~~~I~~~i~~~f~~~Gy~~IeTPv~E~~evf~~~~G--e~~~~~--------~~~~~~~~~ 132 (151)
|.+++|+||||++|+++.++++|++.++++|++|||.+|+||+||++|+|.+++| +++.+. .+.+++|.+
T Consensus 2 ~~~~~p~G~~d~~p~~~~~~~~i~~~l~~~f~~~Gy~~i~tP~lE~~~~~~~~~~~~~~~~~~~~~~~D~~g~~l~LRpD 81 (423)
T PRK12420 2 MEMRNVKGTKDYLPEEQVLRNKIKRALEDVFERYGCKPLETPTLNMYELMSSKYGGGDEILKEIYTLTDQGKRDLALRYD 81 (423)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCEeccccccchHHHHhcccCCCcccccceEEEecCCCceeccccc
Confidence 3468899999999999999999999999999999999999999999999987654 333221 456999999
Q ss_pred hhCCCcchhhhhcc
Q psy1231 133 HSVPSAPLWINWTN 146 (151)
Q Consensus 133 ~~~~~~~~~~~~~~ 146 (151)
++.|-||+++...+
T Consensus 82 ~T~~iaR~va~~~~ 95 (423)
T PRK12420 82 LTIPFAKVVAMNPN 95 (423)
T ss_pred ccHHHHHHHHhCcC
Confidence 99999999997643
No 8
>CHL00201 syh histidine-tRNA synthetase; Provisional
Probab=99.51 E-value=7.6e-15 Score=128.36 Aligned_cols=82 Identities=18% Similarity=0.196 Sum_probs=72.0
Q ss_pred ccCCCccccCChhhHHHHHHHHHHHHHHHHHcCCccccCCccccHHhhhcccCCccc----------cc-chhhhhhHHh
Q psy1231 65 LKTPKGTRDYGPDSTVVRNQVLDKIVKIFKKHGAVTIDTPIFELKEVLTGKYGVYWT----------GY-STAVGFLMIH 133 (151)
Q Consensus 65 ~~~pkGtrD~lP~e~~~~~~I~~~i~~~f~~~Gy~~IeTPv~E~~evf~~~~Ge~~~----------~~-~~~~~~~~~~ 133 (151)
+++|+||||++|+++..+++|++.++++|++|||.+|+||+||++|+|.+++|++.. |. ...+++|.+.
T Consensus 4 ~~~p~G~~D~lp~~~~~~~~i~~~i~~~~~~~Gy~~I~TP~~E~~e~~~~~~G~~~~~~~~~my~~~d~~g~~l~LRpd~ 83 (430)
T CHL00201 4 IQAIRGTKDILPDEINYWQFIHDKALTLLSLANYSEIRTPIFENSSLYDRGIGETTDIVNKEMYRFTDRSNRDITLRPEG 83 (430)
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCeeecCcccchHHHHhcccCCcccccccceEEEEcCCCCEEEeCCCC
Confidence 578999999999999999999999999999999999999999999999998886531 11 3568999999
Q ss_pred hCCCcchhhhhcc
Q psy1231 134 SVPSAPLWINWTN 146 (151)
Q Consensus 134 ~~~~~~~~~~~~~ 146 (151)
++|.+|++....+
T Consensus 84 T~~iaR~~~~~~~ 96 (430)
T CHL00201 84 TAGIVRAFIENKM 96 (430)
T ss_pred cHHHHHHHHHccc
Confidence 9999999766543
No 9
>PRK12293 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=99.49 E-value=1.1e-14 Score=121.38 Aligned_cols=82 Identities=12% Similarity=0.145 Sum_probs=69.0
Q ss_pred ccCCCccccCChhhHHHHHHHHHHHHHHHHHcCCccccCCccccHHhhhcccCCcc---ccc-chhhhhhHHhhCCCcch
Q psy1231 65 LKTPKGTRDYGPDSTVVRNQVLDKIVKIFKKHGAVTIDTPIFELKEVLTGKYGVYW---TGY-STAVGFLMIHSVPSAPL 140 (151)
Q Consensus 65 ~~~pkGtrD~lP~e~~~~~~I~~~i~~~f~~~Gy~~IeTPv~E~~evf~~~~Ge~~---~~~-~~~~~~~~~~~~~~~~~ 140 (151)
.++|+||||++|+++..+++|++.++++|++|||++|+||+||++|+|......+. .|. .+.+++|.+.++|.||+
T Consensus 5 ~~~p~G~rD~lp~e~~~~~~i~~~l~~vf~~~Gy~~I~tP~lE~~e~~~~~~~~~~y~~~D~~g~~l~LRpD~T~~iaR~ 84 (281)
T PRK12293 5 HEIPQGSKLYFGKSAKLKREIENVASEILYENGFEEIVTPFFSYHQHQSIADEKELIRFSDEKNHQISLRADSTLDVVRI 84 (281)
T ss_pred CCCCCcccccCcHHHHHHHHHHHHHHHHHHHcCCeEeeccceeehhhhcccchhceEEEECCCCCEEEECCcCCHHHHHH
Confidence 67899999999999999999999999999999999999999999999955222222 111 34789999999999999
Q ss_pred hhhhcc
Q psy1231 141 WINWTN 146 (151)
Q Consensus 141 ~~~~~~ 146 (151)
.+...+
T Consensus 85 ~a~~~~ 90 (281)
T PRK12293 85 VTKRLG 90 (281)
T ss_pred HHHhcc
Confidence 987543
No 10
>TIGR00442 hisS histidyl-tRNA synthetase. This model finds a histidyl-tRNA synthetase in every completed genome. Apparent second copies from Bacillus subtilis, Synechocystis sp., and Aquifex aeolicus are slightly shorter, more closely related to each other than to other hisS proteins, and actually serve as regulatory subunits for an enzyme of histidine biosynthesis. They were excluded from the seed alignment and score much lower than do single copy histidyl-tRNA synthetases of other genomes not included in the seed alignment. These putative second copies of HisS score below the trusted cutoff. The regulatory protein kinase GCN2 of Saccharomyces cerevisiae (YDR283c), and related proteins from other species designated eIF-2 alpha kinase, have a domain closely related to histidyl-tRNA synthetase that may serve to detect and respond to uncharged tRNA(his), an indicator of amino acid starvation; these regulatory proteins are not orthologous and so score below the noise cutoff.
Probab=99.32 E-value=1e-12 Score=112.85 Aligned_cols=82 Identities=26% Similarity=0.359 Sum_probs=71.6
Q ss_pred cCCCccccCChhhHHHHHHHHHHHHHHHHHcCCccccCCccccHHhhhcccCCcc----------ccc-chhhhhhHHhh
Q psy1231 66 KTPKGTRDYGPDSTVVRNQVLDKIVKIFKKHGAVTIDTPIFELKEVLTGKYGVYW----------TGY-STAVGFLMIHS 134 (151)
Q Consensus 66 ~~pkGtrD~lP~e~~~~~~I~~~i~~~f~~~Gy~~IeTPv~E~~evf~~~~Ge~~----------~~~-~~~~~~~~~~~ 134 (151)
++|+|++|++|.++..+++|++.++++|.+|||.+|+||+||+.++|..+.|++. .|. .+.+++|.+.+
T Consensus 1 ~~p~G~~d~~p~~~~~~~~i~~~i~~~f~~~Gy~~i~~P~le~~~~~~~~~g~~~~~~~~~~~~~~d~~g~~l~LRpD~T 80 (397)
T TIGR00442 1 QAPRGTRDFLPEEMIKWQYIEETIREVFELYGFKEIRTPIFEYTELFARKVGEETDIVEKEMYTFKDKGGRSLTLRPEGT 80 (397)
T ss_pred CCCCCcCCCCHHHHHHHHHHHHHHHHHHHHcCCeEecCcccchHHHhhhccCccccccccceEEEECCCCCEEeecCCCc
Confidence 4799999999999999999999999999999999999999999999988876542 111 46789999999
Q ss_pred CCCcchhhhhccc
Q psy1231 135 VPSAPLWINWTNH 147 (151)
Q Consensus 135 ~~~~~~~~~~~~~ 147 (151)
+|.+|+|++..+.
T Consensus 81 ~~iaR~~~~~~~~ 93 (397)
T TIGR00442 81 APVARAVIENKLL 93 (397)
T ss_pred HHHHHHHHhcccc
Confidence 9999999876543
No 11
>PF13393 tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI_E 3HRK_A 3LC0_A 1Z7N_A 1Z7M_D 3NET_A 1H4V_B 3OD1_A 4E51_B 3RAC_A ....
Probab=99.31 E-value=6e-13 Score=110.55 Aligned_cols=77 Identities=26% Similarity=0.365 Sum_probs=60.1
Q ss_pred ccccCChhhHHHHHHHHHHHHHHHHHcCCccccCCccccHHhhhcccCCccccc-------chhhhhhHHhhCCCcchhh
Q psy1231 70 GTRDYGPDSTVVRNQVLDKIVKIFKKHGAVTIDTPIFELKEVLTGKYGVYWTGY-------STAVGFLMIHSVPSAPLWI 142 (151)
Q Consensus 70 GtrD~lP~e~~~~~~I~~~i~~~f~~~Gy~~IeTPv~E~~evf~~~~Ge~~~~~-------~~~~~~~~~~~~~~~~~~~ 142 (151)
||+|++|+++..+++|++++.++|++|||.+|+||+||+.++|....|++..+- .+-++++.|+++|.+|..+
T Consensus 1 G~~d~~~~~~~~~~~i~~~l~~~f~~~Gy~~i~~P~le~~~~~~~~~~~~~~~~~~~~D~~G~~l~LR~D~T~~iaR~~a 80 (311)
T PF13393_consen 1 GFRDLLPEEARKRERIESKLREVFERHGYEEIETPLLEYYELFLDKSGEDSDNMYRFLDRSGRVLALRPDLTVPIARYVA 80 (311)
T ss_dssp T---B-HHHHHHHHHHHHHHHHHHHHTT-EE-B--SEEEHHHHHCHSSTTGGCSEEEECTTSSEEEE-SSSHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHHHHHHHHHcCCEEEECCeEeecHHhhhccccchhhhEEEEecCCcEeccCCCCcHHHHHHHH
Confidence 899999999999999999999999999999999999999999998877754332 4568999999999999999
Q ss_pred hhcc
Q psy1231 143 NWTN 146 (151)
Q Consensus 143 ~~~~ 146 (151)
...|
T Consensus 81 ~~~~ 84 (311)
T PF13393_consen 81 RNLN 84 (311)
T ss_dssp HCCG
T ss_pred HhcC
Confidence 8753
No 12
>PRK00037 hisS histidyl-tRNA synthetase; Reviewed
Probab=99.29 E-value=1.5e-12 Score=112.23 Aligned_cols=84 Identities=26% Similarity=0.371 Sum_probs=72.4
Q ss_pred ccccCCCccccCChhhHHHHHHHHHHHHHHHHHcCCccccCCccccHHhhhcccCCcc---c-------cc-chhhhhhH
Q psy1231 63 FILKTPKGTRDYGPDSTVVRNQVLDKIVKIFKKHGAVTIDTPIFELKEVLTGKYGVYW---T-------GY-STAVGFLM 131 (151)
Q Consensus 63 ~~~~~pkGtrD~lP~e~~~~~~I~~~i~~~f~~~Gy~~IeTPv~E~~evf~~~~Ge~~---~-------~~-~~~~~~~~ 131 (151)
|.+++|+||+|++|.++..++.|++.++++|.+|||.+|.||+||+.++|..+.|+.. . |. .+.++++.
T Consensus 2 ~~~~~p~G~~d~~p~~~~~~~~i~~~i~~~~~~~Gy~ei~tP~le~~~~~~~~~g~~~~~~~~~~~~~~d~~g~~l~LRp 81 (412)
T PRK00037 2 MKIQAPRGTRDILPEESAKWQYVEDTIREVFERYGFSEIRTPIFEYTELFKRKVGEETDIVEKEMYTFQDKGGRSLTLRP 81 (412)
T ss_pred CCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCeEeeccccchHHHhccccCcccccccceeEEEEcCCCCEEEecC
Confidence 3578999999999999999999999999999999999999999999999988777653 1 21 45788999
Q ss_pred HhhCCCcchhhhhcc
Q psy1231 132 IHSVPSAPLWINWTN 146 (151)
Q Consensus 132 ~~~~~~~~~~~~~~~ 146 (151)
+.+.|.++..+...+
T Consensus 82 d~T~~~ar~~~~~~~ 96 (412)
T PRK00037 82 EGTAPVVRAVIEHKL 96 (412)
T ss_pred CCcHHHHHHHHhCCC
Confidence 999999998876543
No 13
>cd00938 HisRS_RNA HisRS_RNA binding domain. This short RNA-binding domain is found at the N-terminus of HisRS in several higher eukaryote aminoacyl-tRNA synthetases (aaRSs). This domain consists of a helix- turn- helix structure, which is similar to other RNA-binding proteins. It is involved in both protein-RNA interactions by binding tRNA and protein-protein interactions, which are important for the formation of aaRSs into multienzyme complexes.
Probab=99.26 E-value=8.7e-12 Score=77.82 Aligned_cols=42 Identities=62% Similarity=0.798 Sum_probs=40.1
Q ss_pred HHHHHHHHhhHHHHhhhcCCCChhhHHHHHHHHHHHHHhhch
Q psy1231 9 DIQESIKAQGDVVRKLKSSKAPKEQIDEEVKKLLELKNQLKI 50 (151)
Q Consensus 9 ~l~~~i~~qg~~VR~LK~~ka~k~~I~~~V~kLl~LK~ql~~ 50 (151)
.+...|+.||+.||.||+++|++++|+++|++||+||+||+.
T Consensus 2 ~l~~~I~~QGe~VRkLKa~KA~k~~i~~eV~~LL~LKaqlg~ 43 (45)
T cd00938 2 KLEEAVKLQGELVRKLKAEKASKEQIAEEVAKLLELKAQLGG 43 (45)
T ss_pred cHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhCC
Confidence 478899999999999999999999999999999999999986
No 14
>cd00939 MetRS_RNA MetRS_RNA binding domain. This short RNA-binding domain is found at the C-terminus of MetRS in several higher eukaryote aminoacyl-tRNA synthetases (aaRSs). It is repeated in Drosophila MetRS. This domain consists of a helix-turn-helix structure, which is similar to other RNA-binding proteins. It is involved in both protein-RNA interactions by binding tRNA and protein-protein interactions, which are important for the formation of aaRSs into multienzyme complexes.
Probab=99.20 E-value=1.9e-11 Score=76.30 Aligned_cols=41 Identities=49% Similarity=0.686 Sum_probs=38.7
Q ss_pred HHHHHHHhhHHHHhhhcCCCChhhHHHHHHHHHHHHHhhch
Q psy1231 10 IQESIKAQGDVVRKLKSSKAPKEQIDEEVKKLLELKNQLKI 50 (151)
Q Consensus 10 l~~~i~~qg~~VR~LK~~ka~k~~I~~~V~kLl~LK~ql~~ 50 (151)
|...|+.||+.||.||+++|+++.|+++|++||+||++|+.
T Consensus 1 l~~~I~~QGekVR~LKa~ka~k~~i~~eV~~LL~LK~~~k~ 41 (45)
T cd00939 1 LEKEVAEQGNKVRKLKASKADKSVWQPEVNKLLDLKKQLAL 41 (45)
T ss_pred ChHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHH
Confidence 35789999999999999999999999999999999999986
No 15
>COG3705 HisZ ATP phosphoribosyltransferase involved in histidine biosynthesis [Amino acid transport and metabolism]
Probab=99.15 E-value=1.5e-11 Score=107.11 Aligned_cols=81 Identities=20% Similarity=0.337 Sum_probs=67.4
Q ss_pred ccccCCCccccCChhhHHHHHHHHHHHHHHHHHcCCccccCCccccHHhhhcccCCccccc--------chhhhhhHHhh
Q psy1231 63 FILKTPKGTRDYGPDSTVVRNQVLDKIVKIFKKHGAVTIDTPIFELKEVLTGKYGVYWTGY--------STAVGFLMIHS 134 (151)
Q Consensus 63 ~~~~~pkGtrD~lP~e~~~~~~I~~~i~~~f~~~Gy~~IeTPv~E~~evf~~~~Ge~~~~~--------~~~~~~~~~~~ 134 (151)
|+..+|.|+||.+|.++..+++|++.+.+.|.+|||+.|+||++|++|.|....|++.... ...+++|-+.+
T Consensus 1 ~~~~lp~g~rd~Lp~e~~~~~~i~~~l~~~f~~~Gy~~v~tP~lE~~d~~l~~~g~~l~~~~f~l~d~~g~~l~LRpD~T 80 (390)
T COG3705 1 MTWQLPEGIRDVLPLEARRKEEIRDQLLALFRAWGYERVETPTLEPADPLLDGAGEDLRRRLFKLEDETGGRLGLRPDFT 80 (390)
T ss_pred CCCcCCCcchhcchhHHhhHHHHHHHHHHHHHHhCCccccccccchhhhhhhccchhhhhhheEEecCCCCeEEeccccc
Confidence 4578999999999999999999999999999999999999999999999988877764332 33367777777
Q ss_pred CCCcchhhh
Q psy1231 135 VPSAPLWIN 143 (151)
Q Consensus 135 ~~~~~~~~~ 143 (151)
.|-+|.++.
T Consensus 81 ~pVaR~~~~ 89 (390)
T COG3705 81 IPVARIHAT 89 (390)
T ss_pred HHHHHHHHH
Confidence 766666543
No 16
>PLN02734 glycyl-tRNA synthetase
Probab=99.08 E-value=4.1e-10 Score=103.81 Aligned_cols=112 Identities=30% Similarity=0.422 Sum_probs=93.3
Q ss_pred chHHHHHHHHHhhHHHHhhhcCCCChhhHHHHHHHHHHHHHhhchhhhc-c----------cc----------------c
Q psy1231 6 PMADIQESIKAQGDVVRKLKSSKAPKEQIDEEVKKLLELKNQLKINDEA-N----------ED----------------N 58 (151)
Q Consensus 6 ~~~~l~~~i~~qg~~VR~LK~~ka~k~~I~~~V~kLl~LK~ql~~~~~~-~----------~~----------------~ 58 (151)
++..+...|+.||+.||.||.++|++..++++|++|..+|.++..++.. + +. .
T Consensus 8 ~~~~~~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~krRgF 87 (684)
T PLN02734 8 ALAEKQAAVTAQGNAVRALKASKADKAEIDAAIEKLKALKLEKSALEKELQAAVGAGGDGAASKEAFRQAVVNTLERRLF 87 (684)
T ss_pred HHHHHHHHHHHhHHHHhhhhhccCchHHHHHHHHHHHHHHHhhhhhhhhhhhhcccccccccchhHHHHHHHHHHHhcCC
Confidence 4667789999999999999999999999999999999998887652110 0 00 1
Q ss_pred ccCcc-cccCCCccccCChhhHHHHHHHHHHHHHHHHH-cCCccccCCccccHHhhhcccCC
Q psy1231 59 STHKF-ILKTPKGTRDYGPDSTVVRNQVLDKIVKIFKK-HGAVTIDTPIFELKEVLTGKYGV 118 (151)
Q Consensus 59 ~~~~~-~~~~pkGtrD~lP~e~~~~~~I~~~i~~~f~~-~Gy~~IeTPv~E~~evf~~~~Ge 118 (151)
.-+++ .|..+.|++||+|..|+++++|.+.|++.|.. .++.+|+||++-+..||.++ |.
T Consensus 88 ~~pSfeIYGGvaG~yDyGP~G~~lK~ni~~~Wr~~fv~~e~mleid~~~i~p~~V~kAS-GH 148 (684)
T PLN02734 88 YIPSFKIYGGVAGLYDYGPPGCAVKSNVLAFWRQHFVLEENMLEVECPCVTPEVVLKAS-GH 148 (684)
T ss_pred ccccccccCCcccccccCcchHHHHHHHHHHHHHHHhccCCeeEeeccccCCHhHeeec-CC
Confidence 12244 67899999999999999999999999999975 67789999999999999874 66
No 17
>TIGR00443 hisZ_biosyn_reg ATP phosphoribosyltransferase, regulatory subunit. Apparant second copies of histidyl-tRNA synthetase, found in Bacillus subtilis, Synechocystis sp., Aquifex aeolicus, and others, are in fact a regulatory subunit of ATP phosphoribosyltransferase, and usually encoded by a gene adjacent to that encoding the catalytic subunit.
Probab=99.06 E-value=6.5e-11 Score=99.53 Aligned_cols=72 Identities=19% Similarity=0.278 Sum_probs=63.9
Q ss_pred ccCChhhHHHHHHHHHHHHHHHHHcCCccccCCccccHHhhhcccCCccccc--------chhhhhhHHhhCCCcchhhh
Q psy1231 72 RDYGPDSTVVRNQVLDKIVKIFKKHGAVTIDTPIFELKEVLTGKYGVYWTGY--------STAVGFLMIHSVPSAPLWIN 143 (151)
Q Consensus 72 rD~lP~e~~~~~~I~~~i~~~f~~~Gy~~IeTPv~E~~evf~~~~Ge~~~~~--------~~~~~~~~~~~~~~~~~~~~ 143 (151)
||++|+++..+++|++.++++|++|||.+|+||+||+.++|.++.| +..+. .+.+++|.|.++|.++..+.
T Consensus 1 ~D~~p~~~~~~~~i~~~l~~~~~~~Gy~~i~tP~le~~~~~~~~~~-~~~~~~~~~~d~~g~~l~LRpD~T~~iaR~~~~ 79 (314)
T TIGR00443 1 RDLLPEEAARKEEIERQLQDVFRSWGYQEIITPTLEYLDTLSAGGG-ILNEDLFKLFDSLGRVLGLRPDMTTPIARAVST 79 (314)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCeeccCcchhhHHHhcccCC-cchhceEEEECCCCCEEeecCcCcHHHHHHHHH
Confidence 6999999999999999999999999999999999999999988766 33332 45689999999999999886
Q ss_pred h
Q psy1231 144 W 144 (151)
Q Consensus 144 ~ 144 (151)
.
T Consensus 80 ~ 80 (314)
T TIGR00443 80 R 80 (314)
T ss_pred h
Confidence 5
No 18
>PF00458 WHEP-TRS: WHEP-TRS domain; InterPro: IPR000738 A conserved domain of 46 amino acids, called WHEP-TRS has been shown [] to exist in a number of higher eukaryote aminoacyl-transfer RNA synthetases. This domain is present one to six times in the several enzymes. There are three copies in mammalian multifunctional aminoacyl-tRNA synthetase in a region that separates the N-terminal glutamyl-tRNA synthetase domain from the C-terminal prolyl-tRNA synthetase domain, and six copies in the intercatalytic region of the Drosophila enzyme. The domain is found at the N-terminal extremity of the mammalian tryptophanyl- tRNA synthetase and histidyl-tRNA synthetase, and the mammalian, insect, nematode and plant glycyl- tRNA synthetases []. This domain could contain a central alpha-helical region and may play a role in the association of tRNA-synthetases into multienzyme complexes.; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation; PDB: 1R1B_A 1D2D_A 1X59_A 1FYJ_A 2ZT8_A 2ZXF_A 2ZT7_A 2ZT6_A 2PME_A 2ZT5_A ....
Probab=99.05 E-value=2.9e-10 Score=74.31 Aligned_cols=41 Identities=61% Similarity=0.779 Sum_probs=37.3
Q ss_pred HHHHHHHhhHHHHhhhcCCCChhhHHHHHHHHHHHHHhhch
Q psy1231 10 IQESIKAQGDVVRKLKSSKAPKEQIDEEVKKLLELKNQLKI 50 (151)
Q Consensus 10 l~~~i~~qg~~VR~LK~~ka~k~~I~~~V~kLl~LK~ql~~ 50 (151)
|+..|+.||+.||.||++++++.+|+++|++|++||++|+.
T Consensus 1 L~~~I~~QG~~VR~LKa~ka~k~~i~~aV~~Ll~LK~~~~~ 41 (56)
T PF00458_consen 1 LEAQIAAQGDKVRKLKAEKADKEEIDAAVAKLLELKAELKE 41 (56)
T ss_dssp HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999976
No 19
>cd00774 GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-like class II core catalytic domain. GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP binding and hydrolysis. This alignment contains only sequences from the GlyRS form which homodimerizes. The heterotetramer glyQ is in a different family of class II aaRS. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the N-terminus of the accessory subunit of mitochondrial polymerase gamma (Pol gamma b). Pol gamma b stimulates processive DNA synthesis and is functional as a homodimer, which can associate with the catalytic subunit Pol gamma alpha to form a heterotrimer. Despite significant both structural and sequence similarity with Gly
Probab=98.89 E-value=9.4e-10 Score=90.25 Aligned_cols=85 Identities=20% Similarity=0.139 Sum_probs=63.8
Q ss_pred cccCCCccccCChhhHHHHHHHHHHHHHHHHHcC--CccccCCccccHHhhhcccCCcccccchhhhhhHHhh----CCC
Q psy1231 64 ILKTPKGTRDYGPDSTVVRNQVLDKIVKIFKKHG--AVTIDTPIFELKEVLTGKYGVYWTGYSTAVGFLMIHS----VPS 137 (151)
Q Consensus 64 ~~~~pkGtrD~lP~e~~~~~~I~~~i~~~f~~~G--y~~IeTPv~E~~evf~~~~Ge~~~~~~~~~~~~~~~~----~~~ 137 (151)
.+..|+|++||+|..+.++++|.+.|++.|.++| |.+|+||++++.++|..+.|+.- +..+.+.++-... ++.
T Consensus 17 iy~~~~G~~d~~P~g~~l~~~i~~~~~~~~~~~g~~~~~i~tP~i~~~~mf~~~~g~~d-~~~~~~~Lrp~~~~~~~~~~ 95 (254)
T cd00774 17 IYGGVAGFYDYGPLGVELKNNIKSAWRKSFVLEEEDMLEIDSPIITPELMFKTSIGPVE-SGGNLGYLRPETAQGIFVNF 95 (254)
T ss_pred hccChhcccccCchHHHHHHHHHHHHHHHHHhcCCCeEEEeccccCCHHHheeeecccC-CCCcccccCCcccchHHHHH
Confidence 5677999999999999999999999999999996 99999999999999998877631 1223344444444 444
Q ss_pred cchhhhhccccC
Q psy1231 138 APLWINWTNHLG 149 (151)
Q Consensus 138 ~~~~~~~~~~~~ 149 (151)
++.+..+...||
T Consensus 96 ~~~~~~~~~~lP 107 (254)
T cd00774 96 KNLLEFNRRKLP 107 (254)
T ss_pred HHHHHHhCCCCC
Confidence 444444443443
No 20
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed
Probab=98.82 E-value=2.9e-09 Score=96.85 Aligned_cols=112 Identities=15% Similarity=0.181 Sum_probs=74.3
Q ss_pred CChhhHHHHHHHHHHHHHhhchhhhcccccccCcc-cccCCCccccCChhhHHHHHHHHHHHHHHHHHcCCccccCCccc
Q psy1231 29 APKEQIDEEVKKLLELKNQLKINDEANEDNSTHKF-ILKTPKGTRDYGPDSTVVRNQVLDKIVKIFKKHGAVTIDTPIFE 107 (151)
Q Consensus 29 a~k~~I~~~V~kLl~LK~ql~~~~~~~~~~~~~~~-~~~~pkGtrD~lP~e~~~~~~I~~~i~~~f~~~Gy~~IeTPv~E 107 (151)
+++.+..+-++.|.+++..-.. . -+ ..-..+ .-..|+||+||+|.++.+++.|++.++++|.+|||.+|.||+||
T Consensus 223 ~~~~~l~~~~~~~~e~~~~~h~-~-l~--~~~~~~~~~~~~~G~~~~lp~~~~~~~~i~~~~~~~~~~~Gy~ei~tP~le 298 (638)
T PRK00413 223 ADKKELDAYLHRLEEAKKRDHR-K-LG--KELDLFHFQEEAPGLPFWHPKGWTIRRELERYIRRKLRKAGYQEVKTPQIL 298 (638)
T ss_pred CCHHHHHHHHHHHHHhccccHH-H-HH--HhcCEEEecCCCCcceEEcccHHHHHHHHHHHHHHHHHHCCCEEEECCeeC
Confidence 4556666666666655432111 0 00 001122 23567999999999999999999999999999999999999999
Q ss_pred cHHhhhcccCC-cc-c-------cc-chhhhhhHHhhCCCcchhhhhc
Q psy1231 108 LKEVLTGKYGV-YW-T-------GY-STAVGFLMIHSVPSAPLWINWT 145 (151)
Q Consensus 108 ~~evf~~~~Ge-~~-~-------~~-~~~~~~~~~~~~~~~~~~~~~~ 145 (151)
+.++|.++ |. +. . +. ...++++.....+-++.+++|.
T Consensus 299 ~~~l~~~~-g~~~~~~~~my~~~d~~~~~~~LRP~~~~~~~r~~~~~~ 345 (638)
T PRK00413 299 DRELWETS-GHWDHYRENMFPTTESDGEEYALKPMNCPGHVQIYKQGL 345 (638)
T ss_pred CHHHHHhc-CChhhhhhccceeecCCCcEEEEecCCcHHHHHHHhCcC
Confidence 99999885 63 21 1 11 2446666644434366666654
No 21
>PRK12295 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=98.73 E-value=3.3e-09 Score=91.82 Aligned_cols=65 Identities=17% Similarity=0.202 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHHHHcCCccccCCccccHHhhhcccCCccccc--------chhhhhhHHhhCCCcchhhhh
Q psy1231 80 VVRNQVLDKIVKIFKKHGAVTIDTPIFELKEVLTGKYGVYWTGY--------STAVGFLMIHSVPSAPLWINW 144 (151)
Q Consensus 80 ~~~~~I~~~i~~~f~~~Gy~~IeTPv~E~~evf~~~~Ge~~~~~--------~~~~~~~~~~~~~~~~~~~~~ 144 (151)
...++|.+.++++|++|||.+|+||+||++++|..++|+++.+. .+.+++|.|+++|.+|++...
T Consensus 5 ~~~~~i~~~i~~~f~~~Gy~~I~tP~lE~~e~~~~~~g~~~~~~~~~f~D~~G~~l~LRpD~T~piaR~~~~~ 77 (373)
T PRK12295 5 SASAAAAEALLASFEAAGAVRVDPPILQPAEPFLDLSGEDIRRRIFVTSDENGEELCLRPDFTIPVCRRHIAT 77 (373)
T ss_pred hhHHHHHHHHHHHHHHcCCEEeeCCccccHHHhhhccCchhhcceEEEECCCCCEEeeCCCCcHHHHHHHHHc
Confidence 34679999999999999999999999999999999888875433 457899999999999998764
No 22
>cd00779 ProRS_core_prok Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from prokaryotes and from the mitochondria of eukaryotes.
Probab=98.67 E-value=2e-08 Score=82.40 Aligned_cols=55 Identities=27% Similarity=0.326 Sum_probs=50.6
Q ss_pred ccccCCCccccCChhhHHHHHHHHHHHHHHHHHcCCccccCCccccHHhhhcccCC
Q psy1231 63 FILKTPKGTRDYGPDSTVVRNQVLDKIVKIFKKHGAVTIDTPIFELKEVLTGKYGV 118 (151)
Q Consensus 63 ~~~~~pkGtrD~lP~e~~~~~~I~~~i~~~f~~~Gy~~IeTPv~E~~evf~~~~Ge 118 (151)
+....++|++|++|.++.++++|++.+.++|.++||.+|.||+||+.++|.++ |.
T Consensus 15 ~~~~~~~G~~~~lP~g~~l~~~i~~~~~~~~~~~G~~ei~~P~l~~~~~~~~s-g~ 69 (255)
T cd00779 15 FIRQTSSGLYSWLPLGLRVLKKIENIIREEMNKIGAQEILMPILQPAELWKES-GR 69 (255)
T ss_pred CcccCCCceEEECchHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHHhc-CC
Confidence 44567999999999999999999999999999999999999999999999775 54
No 23
>cd00773 HisRS-like_core Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain. HisRS is a homodimer. It is responsible for the attachment of histidine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ. HisZ along with HisG catalyze the first reaction in histidine biosynthesis. HisZ is found only in a subset of bacteria and differs from HisRS in lacking a C-terminal anti-codon binding domain.
Probab=98.57 E-value=2.2e-08 Score=81.84 Aligned_cols=69 Identities=22% Similarity=0.264 Sum_probs=58.5
Q ss_pred hHHHHHHHHHHHHHHHHHcCCccccCCccccHHhhhcccCCccccc--------chhhhhhHHhhCCCcchhhhhcc
Q psy1231 78 STVVRNQVLDKIVKIFKKHGAVTIDTPIFELKEVLTGKYGVYWTGY--------STAVGFLMIHSVPSAPLWINWTN 146 (151)
Q Consensus 78 e~~~~~~I~~~i~~~f~~~Gy~~IeTPv~E~~evf~~~~Ge~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~ 146 (151)
++..+++|++.++++|++|||.+|+||+||+.+++.++.|+...+. .+.++++.+.+.|.+++++.+..
T Consensus 1 ~~~~~~~l~~~l~~~f~~~Gy~~v~tP~le~~~~~~~~~~~~~~~~~~~~~d~~g~~l~LRpd~T~~iaR~~a~~~~ 77 (261)
T cd00773 1 EAALRRYIEDTLREVFERYGYEEIDTPVFEYTELFLRKSGDEVSKEMYRFKDKGGRDLALRPDLTAPVARAVAENLL 77 (261)
T ss_pred ChHHHHHHHHHHHHHHHHcCCEEeeccceeeHHHhcccccccccceEEEEECCCCCEEEeCCCCcHHHHHHHHhcCc
Confidence 4678999999999999999999999999999999987655543222 35789999999999999998765
No 24
>cd00772 ProRS_core Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain.
Probab=98.52 E-value=4.1e-08 Score=81.19 Aligned_cols=80 Identities=18% Similarity=0.238 Sum_probs=65.4
Q ss_pred ccCCCccccCChhhHHHHHHHHHHHHHHHHHcCCccccCCccccHHhhhcccCCccccc----------c-----hhhhh
Q psy1231 65 LKTPKGTRDYGPDSTVVRNQVLDKIVKIFKKHGAVTIDTPIFELKEVLTGKYGVYWTGY----------S-----TAVGF 129 (151)
Q Consensus 65 ~~~pkGtrD~lP~e~~~~~~I~~~i~~~f~~~Gy~~IeTPv~E~~evf~~~~Ge~~~~~----------~-----~~~~~ 129 (151)
...|+|++|++|..+.++++|++.+++.+.++||++|.||+|++.+++. +.|.....+ . ..+.+
T Consensus 18 ~~~~~G~~~~lP~g~~i~~~I~~~i~~~~~~~G~~ev~~P~l~~~~~~~-~~g~~~~~~~~e~~~~~~~~~~~~~~~l~L 96 (264)
T cd00772 18 QGPGRGIINFLPLAKAILDKIENVLDKMFKEHGAQNALFPFFILASFLE-KEAEHDEGFSKELAVFKDAGDEELEEDFAL 96 (264)
T ss_pred ccCCCCEEEECCcHHHHHHHHHHHHHHHHHHcCCeEEECCeeccHHHHh-hcCCcccccCccceEEEeCCCCccCceEEE
Confidence 4559999999999999999999999999999999999999999999995 445432111 1 45677
Q ss_pred hHHhhCCCcchhhhhc
Q psy1231 130 LMIHSVPSAPLWINWT 145 (151)
Q Consensus 130 ~~~~~~~~~~~~~~~~ 145 (151)
+....+|.+.++.+|.
T Consensus 97 rPt~e~~~~~~~~~~i 112 (264)
T cd00772 97 RPTLEENIGEIAAKFI 112 (264)
T ss_pred CCCCCHHHHHHHHhhh
Confidence 7777888888888875
No 25
>PRK12305 thrS threonyl-tRNA synthetase; Reviewed
Probab=98.49 E-value=1.1e-07 Score=85.82 Aligned_cols=52 Identities=19% Similarity=0.288 Sum_probs=48.7
Q ss_pred cCCCccccCChhhHHHHHHHHHHHHHHHHHcCCccccCCccccHHhhhcccCC
Q psy1231 66 KTPKGTRDYGPDSTVVRNQVLDKIVKIFKKHGAVTIDTPIFELKEVLTGKYGV 118 (151)
Q Consensus 66 ~~pkGtrD~lP~e~~~~~~I~~~i~~~f~~~Gy~~IeTPv~E~~evf~~~~Ge 118 (151)
..++|++||+|.++.+++.|++.++++|.+|||.+|.||+||+.++|.++ |.
T Consensus 193 ~~~~G~~~~~p~~~~~~~~l~~~~~~~~~~~Gy~ev~tP~le~~~l~~~s-g~ 244 (575)
T PRK12305 193 EIGPGLPVWHPKGAIIRREIEDYLRKEHLKRGYEFVYTPHIGKSDLWKTS-GH 244 (575)
T ss_pred ccCCcceEEeccHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHhhc-CC
Confidence 45899999999999999999999999999999999999999999999873 54
No 26
>PRK12294 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=98.49 E-value=5.6e-08 Score=81.17 Aligned_cols=67 Identities=7% Similarity=-0.033 Sum_probs=54.0
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCccccCCccccHHhhhcccCCcccc---------cchhhhhhHHhhCCCcchhhhh
Q psy1231 77 DSTVVRNQVLDKIVKIFKKHGAVTIDTPIFELKEVLTGKYGVYWTG---------YSTAVGFLMIHSVPSAPLWINW 144 (151)
Q Consensus 77 ~e~~~~~~I~~~i~~~f~~~Gy~~IeTPv~E~~evf~~~~Ge~~~~---------~~~~~~~~~~~~~~~~~~~~~~ 144 (151)
+....+++|++.+.++|++|||++|+||+||++|+|.. .|+++.. .-+.+++|.|.+.|-||+++..
T Consensus 5 ~~~~~~~~ie~~l~~~f~~~GY~~I~tP~~E~~d~~~~-~~~~~~~~~~~~~~~~~Gr~laLRpD~T~~iAR~~a~~ 80 (272)
T PRK12294 5 EQLIALKESETAFLKYFNKADYELVDFSVIEKLDWKQL-NHEDLQQMGERSFWQHEHQIYALRNDFTDQLLRYYSMY 80 (272)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCeEeeCCcchhHHhhhc-cccchhhhheeeeecCCCCEEEEcCCCCHHHHHHHHhc
Confidence 45566899999999999999999999999999999843 3433322 1467889999999999988754
No 27
>PRK09194 prolyl-tRNA synthetase; Provisional
Probab=98.45 E-value=7.3e-08 Score=87.24 Aligned_cols=53 Identities=21% Similarity=0.263 Sum_probs=49.6
Q ss_pred ccccCCCccccCChhhHHHHHHHHHHHHHHHHHcCCccccCCccccHHhhhcc
Q psy1231 63 FILKTPKGTRDYGPDSTVVRNQVLDKIVKIFKKHGAVTIDTPIFELKEVLTGK 115 (151)
Q Consensus 63 ~~~~~pkGtrD~lP~e~~~~~~I~~~i~~~f~~~Gy~~IeTPv~E~~evf~~~ 115 (151)
+.-+.++|++||+|.++.++++|++.+++.|.++||++|.||+|++.++|.++
T Consensus 31 ~i~~~~~G~~~~lP~g~~~~~~i~~~i~~~~~~~G~~ei~~P~l~~~~l~~~s 83 (565)
T PRK09194 31 YIRKLASGIYTYLPLGLRVLRKIENIVREEMNKIGAQEVLMPALQPAELWQES 83 (565)
T ss_pred CccccCCCeeEECccHHHHHHHHHHHHHHHHHHcCCEEEECcccCcHHHHhhc
Confidence 44567899999999999999999999999999999999999999999999765
No 28
>cd00771 ThrRS_core Threonyl-tRNA synthetase (ThrRS) class II core catalytic domain. ThrRS is a homodimer. It is responsible for the attachment of threonine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain.
Probab=98.39 E-value=3e-07 Score=77.08 Aligned_cols=52 Identities=25% Similarity=0.406 Sum_probs=48.6
Q ss_pred cCCCccccCChhhHHHHHHHHHHHHHHHHHcCCccccCCccccHHhhhcccCC
Q psy1231 66 KTPKGTRDYGPDSTVVRNQVLDKIVKIFKKHGAVTIDTPIFELKEVLTGKYGV 118 (151)
Q Consensus 66 ~~pkGtrD~lP~e~~~~~~I~~~i~~~f~~~Gy~~IeTPv~E~~evf~~~~Ge 118 (151)
..++|++|++|.++.+++.|++.++++|..+||.+|.||+||+.++|.++ |.
T Consensus 17 ~~~~G~~~~~p~g~~l~~~l~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~s-g~ 68 (298)
T cd00771 17 EAGPGLPFWLPKGAIIRNELEDFLRELQRKRGYQEVETPIIYNKELWETS-GH 68 (298)
T ss_pred CCCCcceEEcccHHHHHHHHHHHHHHHHHHcCCEEEECCeecCHHHHhhC-CC
Confidence 36899999999999999999999999999999999999999999999874 53
No 29
>TIGR00418 thrS threonyl-tRNA synthetase. This model represents the threonyl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. Note that B. subtilis has closely related isozymes thrS and thrZ. The N-terminal regions are quite dissimilar between archaeal and eubacterial forms, while some eukaryotic forms are missing sequence there altogether..
Probab=98.38 E-value=2.8e-07 Score=82.84 Aligned_cols=49 Identities=22% Similarity=0.219 Sum_probs=47.3
Q ss_pred CCCccccCChhhHHHHHHHHHHHHHHHHHcCCccccCCccccHHhhhcc
Q psy1231 67 TPKGTRDYGPDSTVVRNQVLDKIVKIFKKHGAVTIDTPIFELKEVLTGK 115 (151)
Q Consensus 67 ~pkGtrD~lP~e~~~~~~I~~~i~~~f~~~Gy~~IeTPv~E~~evf~~~ 115 (151)
.++||+|++|.++.+++.|++.+++.|.+|||.+|.||+||+.++|.++
T Consensus 188 ~~~G~~~~~p~g~~~~~~i~~~~~~~~~~~G~~ev~tP~l~~~~l~~~s 236 (563)
T TIGR00418 188 IGPGLPFWLPKGATIRNLLEDFVRQKQIKYGYMEVETPIMYDLELWEIS 236 (563)
T ss_pred cCCcceEEeccHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHHhc
Confidence 4899999999999999999999999999999999999999999999885
No 30
>cd01200 WHEPGMRS_RNA EPRS-like_RNA binding domain. This short RNA-binding domain is found in several higher eukaryote aminoacyl-tRNA synthetases (aaRSs). It is found in three copies in the mammalian bifunctional EPRS in a region that separates the N-terminal GluRS from the C-terminal ProRS. In the Drosophila EPRS, this domain is repeated six times. It is found at the N-terminus of TrpRS, HisRS and GlyR and at the C-terminus of MetRS. This domain consists of a helix- turn- helix structure, which is similar to other RNA-binding proteins. It is involved in both protein-RNA interactions by binding tRNA and protein-protein interactions, which are important for the formation of aaRSs into multienzyme complexes.
Probab=98.34 E-value=7.9e-07 Score=54.08 Aligned_cols=39 Identities=67% Similarity=0.865 Sum_probs=36.5
Q ss_pred HHHHHhhHHHHhhhcCCCChhhHHHHHHHHHHHHHhhch
Q psy1231 12 ESIKAQGDVVRKLKSSKAPKEQIDEEVKKLLELKNQLKI 50 (151)
Q Consensus 12 ~~i~~qg~~VR~LK~~ka~k~~I~~~V~kLl~LK~ql~~ 50 (151)
..|..||+.||.||..++++..|+.+|.+|++||++|+.
T Consensus 2 ~~i~~qg~~vR~lK~~~a~k~~~~~~v~~L~~lK~~~~~ 40 (42)
T cd01200 2 EKIAEQGDLVRKLKAEKAPKEEIDAAVKKLLALKAQYKE 40 (42)
T ss_pred cHHHHhHHHHHhccccCCCHHHHHHHHHHHHHHHHHhhh
Confidence 478999999999999999999999999999999999975
No 31
>cd00936 WEPRS_RNA WEPRS_RNA binding domain. This short RNA-binding domain is found in several higher eukaryote aminoacyl-tRNA synthetases (aaRSs). It is found in multiple copies in eukaryotic bifunctional glutamyl-prolyl-tRNA synthetases (EPRS) in a region that separates the N-terminal glutamyl-tRNA synthetase (GluRS) from the C-terminal prolyl-tRNA synthetase (ProRS). It is also found at the N-terminus of vertebrate tryptophanyl-tRNA synthetases (TrpRS). This domain consists of a helix-turn-helix structure, which is similar to other RNA-binding proteins. It is involved in both protein-RNA interactions by binding tRNA and protein-protein interactions, which are important for the formation of aaRSs into multienzyme complexes.
Probab=98.33 E-value=6e-07 Score=56.95 Aligned_cols=41 Identities=59% Similarity=0.800 Sum_probs=38.2
Q ss_pred HHHHHHHhhHHHHhhhcCCCChhhHHHHHHHHHHHHHhhch
Q psy1231 10 IQESIKAQGDVVRKLKSSKAPKEQIDEEVKKLLELKNQLKI 50 (151)
Q Consensus 10 l~~~i~~qg~~VR~LK~~ka~k~~I~~~V~kLl~LK~ql~~ 50 (151)
|...|+.||+.||.||.+++++..|+.+|+.|++||.+|+.
T Consensus 1 ~~~~i~~qge~VR~LK~~~a~k~~~~~av~~Ll~lK~~~k~ 41 (50)
T cd00936 1 LYKKIAAQGDLVRELKAKKAPKEEIDAAVKKLLALKADYKE 41 (50)
T ss_pred ChHHHHhchHHHhhhccccCchHHHHHHHHHHHHHHHHHHH
Confidence 35789999999999999999999999999999999999986
No 32
>PRK14799 thrS threonyl-tRNA synthetase; Provisional
Probab=98.33 E-value=2.4e-07 Score=83.99 Aligned_cols=80 Identities=13% Similarity=0.178 Sum_probs=68.0
Q ss_pred cCCCccccCChhhHHHHHHHHHHHHHHHHHcCCccccCCccccHHhhhcccCCc--cccc-------chhhhhhHHhhCC
Q psy1231 66 KTPKGTRDYGPDSTVVRNQVLDKIVKIFKKHGAVTIDTPIFELKEVLTGKYGVY--WTGY-------STAVGFLMIHSVP 136 (151)
Q Consensus 66 ~~pkGtrD~lP~e~~~~~~I~~~i~~~f~~~Gy~~IeTPv~E~~evf~~~~Ge~--~~~~-------~~~~~~~~~~~~~ 136 (151)
..++|+++|+|.++.+++.|++.+++.+.++||++|.||+|+..+++.. +|.. ..+. ...++++.....|
T Consensus 155 ~~~~G~~~~lP~G~~i~~~L~~~~r~~~~~~Gy~eV~TP~i~~~eL~k~-SGh~~~y~~~mf~~~~~~e~~~LrPm~cp~ 233 (545)
T PRK14799 155 EAGSGLVLFHPKGQTIRNELIAFMREINDSMGYQEVYTSHVFKTDIWKI-SGHYTLYRDKLIVFNMEGDEYGVKPMNCPA 233 (545)
T ss_pred ccCCcceEEcChHHHHHHHHHHHHHHHHHHcCCeEEECCccchHHHHhh-ccccccchhhcceeeccCceEEeccCCCHH
Confidence 5689999999999999999999999999999999999999999999987 5664 2221 4567788888888
Q ss_pred Ccchhhhhcc
Q psy1231 137 SAPLWINWTN 146 (151)
Q Consensus 137 ~~~~~~~~~~ 146 (151)
.++.+.+|..
T Consensus 234 ~~~~~~~~~~ 243 (545)
T PRK14799 234 HILIYKSKPR 243 (545)
T ss_pred HHHHHhcccc
Confidence 8888888755
No 33
>cd00778 ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from archaea, the cytoplasm of eukaryotes and some bacteria.
Probab=98.17 E-value=1.9e-06 Score=70.97 Aligned_cols=53 Identities=15% Similarity=0.181 Sum_probs=48.5
Q ss_pred ccCCCccccCChhhHHHHHHHHHHHHHHHHHcCCccccCCccccHHhhhcccC
Q psy1231 65 LKTPKGTRDYGPDSTVVRNQVLDKIVKIFKKHGAVTIDTPIFELKEVLTGKYG 117 (151)
Q Consensus 65 ~~~pkGtrD~lP~e~~~~~~I~~~i~~~f~~~Gy~~IeTPv~E~~evf~~~~G 117 (151)
+..++|+++++|..+.+++.|++.+++.+.++||++|.||++++.+++..+.|
T Consensus 18 ~~~~~G~~~~lP~g~~l~~~l~~~~~~~~~~~G~~ev~~P~l~~~~~~~~~sg 70 (261)
T cd00778 18 YGPVKGCMVFRPYGYAIWENIQKILDKEIKETGHENVYFPLLIPESELEKEKE 70 (261)
T ss_pred cCCCCCeEEEcccHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHhhhhhc
Confidence 44688999999999999999999999999999999999999999999965444
No 34
>TIGR00408 proS_fam_I prolyl-tRNA synthetase, family I. Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent families. This family includes the archaeal enzyme, the Pro-specific domain of a human multifunctional tRNA ligase, and the enzyme from the spirochete Borrelia burgdorferi. The other family includes enzymes from Escherichia coli, Bacillus subtilis, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae.
Probab=98.15 E-value=9.1e-07 Score=78.77 Aligned_cols=80 Identities=13% Similarity=0.219 Sum_probs=62.0
Q ss_pred ccCCCccccCChhhHHHHHHHHHHHHHHHHHcCCccccCCccccHHhhhcccCCccccc---------------chhhhh
Q psy1231 65 LKTPKGTRDYGPDSTVVRNQVLDKIVKIFKKHGAVTIDTPIFELKEVLTGKYGVYWTGY---------------STAVGF 129 (151)
Q Consensus 65 ~~~pkGtrD~lP~e~~~~~~I~~~i~~~f~~~Gy~~IeTPv~E~~evf~~~~Ge~~~~~---------------~~~~~~ 129 (151)
+..++|+++++|..+.+++.|++.+++.|+++||++|.||+|++.+++... |+.+.++ +..+++
T Consensus 24 ~~~~~G~~~~lP~g~~i~~~I~~~i~~~~~~~G~~ev~~P~l~~~~~~~~~-~~h~~~f~~e~f~v~~~g~~~~~e~l~L 102 (472)
T TIGR00408 24 YYPVKGCYVWLPYGFKIWKNIQKILRNILDEIGHEEVYFPMLIPESELAKE-KDHIKGFEPEVYWITHGGLSKLDEPLAL 102 (472)
T ss_pred ccCCCceEEECcCHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHHhh-cchhhhcchhcEEEecCCCCccCCcEEE
Confidence 467999999999999999999999999999999999999999999999874 4333221 134555
Q ss_pred hHHhhCCCcchhhhhc
Q psy1231 130 LMIHSVPSAPLWINWT 145 (151)
Q Consensus 130 ~~~~~~~~~~~~~~~~ 145 (151)
+.....|.++.+.+|.
T Consensus 103 rPt~e~~i~~~~~~~i 118 (472)
T TIGR00408 103 RPTSETAMYPMFKKWV 118 (472)
T ss_pred eCCCcHHHHHHHhccc
Confidence 5555555555555553
No 35
>TIGR00409 proS_fam_II prolyl-tRNA synthetase, family II. Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent groups. This group includes enzymes from Escherichia coli, Bacillus subtilis, Aquifex aeolicus, the spirochete Treponema pallidum, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae. The other group includes the Pro-specific domain of a human multifunctional tRNA ligase and the prolyl-tRNA synthetases from the Archaea, the Mycoplasmas, and the spirochete Borrelia burgdorferi.
Probab=98.09 E-value=2.8e-06 Score=77.42 Aligned_cols=53 Identities=21% Similarity=0.292 Sum_probs=49.5
Q ss_pred ccccCCCccccCChhhHHHHHHHHHHHHHHHHHcCCccccCCccccHHhhhcc
Q psy1231 63 FILKTPKGTRDYGPDSTVVRNQVLDKIVKIFKKHGAVTIDTPIFELKEVLTGK 115 (151)
Q Consensus 63 ~~~~~pkGtrD~lP~e~~~~~~I~~~i~~~f~~~Gy~~IeTPv~E~~evf~~~ 115 (151)
|.-+.++|++||+|.++.++++|++.+++.+.++||++|.||+|++.+++..+
T Consensus 31 ~i~~~~~G~~~~lP~g~rv~~~I~~~i~~~~~~~G~~ei~~P~l~~~el~~~s 83 (568)
T TIGR00409 31 FIRRLGSGLYNWLPLGLRVLKKVENIVREEMNKDGAIEVLLPALQPAELWQES 83 (568)
T ss_pred CccccCCceEEECChHHHHHHHHHHHHHHHHHHcCCEEEECCccchHHHHhhc
Confidence 44567899999999999999999999999999999999999999999999875
No 36
>PRK12444 threonyl-tRNA synthetase; Reviewed
Probab=98.06 E-value=3.2e-06 Score=77.47 Aligned_cols=52 Identities=21% Similarity=0.307 Sum_probs=48.9
Q ss_pred cCCCccccCChhhHHHHHHHHHHHHHHHHHcCCccccCCccccHHhhhcccCC
Q psy1231 66 KTPKGTRDYGPDSTVVRNQVLDKIVKIFKKHGAVTIDTPIFELKEVLTGKYGV 118 (151)
Q Consensus 66 ~~pkGtrD~lP~e~~~~~~I~~~i~~~f~~~Gy~~IeTPv~E~~evf~~~~Ge 118 (151)
..++||+||+|.++.+++.|.+.+++.+.++||.+|.||+|++.++|.++ |.
T Consensus 261 ~~~~G~~~~~p~g~~~~~~i~~~~~~~~~~~G~~~v~tP~l~~~~l~~~s-G~ 312 (639)
T PRK12444 261 EEAPGMPFYLPKGQIIRNELEAFLREIQKEYNYQEVRTPFMMNQELWERS-GH 312 (639)
T ss_pred cccCcceEEeeCHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHhhc-CC
Confidence 45889999999999999999999999999999999999999999999885 54
No 37
>PRK08661 prolyl-tRNA synthetase; Provisional
Probab=97.93 E-value=9.5e-06 Score=72.34 Aligned_cols=51 Identities=18% Similarity=0.275 Sum_probs=47.9
Q ss_pred ccCCCccccCChhhHHHHHHHHHHHHHHHHHcCCccccCCccccHHhhhcc
Q psy1231 65 LKTPKGTRDYGPDSTVVRNQVLDKIVKIFKKHGAVTIDTPIFELKEVLTGK 115 (151)
Q Consensus 65 ~~~pkGtrD~lP~e~~~~~~I~~~i~~~f~~~Gy~~IeTPv~E~~evf~~~ 115 (151)
+..++|+++++|..+.++++|++.+.+.|.++||++|.||+|++.++|...
T Consensus 30 ~~~v~G~~~~~P~g~~i~~~i~~~~~~~~~~~G~~ev~~P~l~~~~~~~~~ 80 (477)
T PRK08661 30 YSPVKGCMVIKPYGYAIWENIQKILDKLFKETGHENVYFPLLIPESLLEKE 80 (477)
T ss_pred cCCCCceEEECccHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHhhh
Confidence 445899999999999999999999999999999999999999999999765
No 38
>PRK12325 prolyl-tRNA synthetase; Provisional
Probab=97.89 E-value=1.2e-05 Score=70.91 Aligned_cols=52 Identities=15% Similarity=0.234 Sum_probs=48.4
Q ss_pred cCCCccccCChhhHHHHHHHHHHHHHHHHHcCCccccCCccccHHhhhcccCC
Q psy1231 66 KTPKGTRDYGPDSTVVRNQVLDKIVKIFKKHGAVTIDTPIFELKEVLTGKYGV 118 (151)
Q Consensus 66 ~~pkGtrD~lP~e~~~~~~I~~~i~~~f~~~Gy~~IeTPv~E~~evf~~~~Ge 118 (151)
..++|+++|+|..+.+++.|++.+++.+.++||++|.||+|++.+++..+ |.
T Consensus 34 ~~~~G~~~~lP~g~~i~~~i~~~i~~~~~~~G~~ev~~P~l~~~~l~~~s-g~ 85 (439)
T PRK12325 34 QQAAGIYSWLPLGLKVLKKIENIVREEQNRAGAIEILMPTIQPADLWRES-GR 85 (439)
T ss_pred ccCCceEEECCcHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHhhc-CC
Confidence 45899999999999999999999999999999999999999999999764 44
No 39
>PLN02908 threonyl-tRNA synthetase
Probab=97.80 E-value=2.2e-05 Score=72.90 Aligned_cols=78 Identities=13% Similarity=0.177 Sum_probs=59.4
Q ss_pred cCCCccccCChhhHHHHHHHHHHHHHHHHHcCCccccCCccccHHhhhcccCCc--cccc-------chhhhhhHHhhCC
Q psy1231 66 KTPKGTRDYGPDSTVVRNQVLDKIVKIFKKHGAVTIDTPIFELKEVLTGKYGVY--WTGY-------STAVGFLMIHSVP 136 (151)
Q Consensus 66 ~~pkGtrD~lP~e~~~~~~I~~~i~~~f~~~Gy~~IeTPv~E~~evf~~~~Ge~--~~~~-------~~~~~~~~~~~~~ 136 (151)
..++|+++|+|..+.+++.|.+.+++.+.++||.+|.||+|+..+++.. +|.. ..+. ....+++.....|
T Consensus 308 ~~~~G~~~~lP~g~~i~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~-sGh~~~~~~~mf~~~~~~~~~~Lrp~~~~~ 386 (686)
T PLN02908 308 ELSPGSCFFLPHGARIYNKLMDFIREQYWERGYDEVITPNIYNMDLWET-SGHAAHYKENMFVFEIEKQEFGLKPMNCPG 386 (686)
T ss_pred CCCCcceEEechHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHhh-cCCccccchhccEEecCCeeEEEcCCCcHH
Confidence 4578999999999999999999999999999999999999999999986 5653 1111 2344455444455
Q ss_pred Ccchhhhh
Q psy1231 137 SAPLWINW 144 (151)
Q Consensus 137 ~~~~~~~~ 144 (151)
.++...+|
T Consensus 387 ~~~~~~~~ 394 (686)
T PLN02908 387 HCLMFAHR 394 (686)
T ss_pred HHHHHhcc
Confidence 55444444
No 40
>cd00670 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain. This domain is the core catalytic domain of tRNA synthetases of the subgroup containing glycyl, histidyl, prolyl, seryl and threonyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. These enzymes belong to class II aminoacyl-tRNA synthetases (aaRS) based upon their structure and the presence of three characteristic sequence motifs in the core domain. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ and the accessory subunit of mitochondrial polymerase gamma (Pol gamma b) . Most class II tRNA synthetases are dimers, with this subgroup consisting of mostly homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=97.75 E-value=1.2e-05 Score=63.66 Aligned_cols=67 Identities=9% Similarity=-0.064 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHHHcCCccccCCccccHHhhhccc-CCccccc------------chhhhhhHHhhCCCcchhhhhc
Q psy1231 79 TVVRNQVLDKIVKIFKKHGAVTIDTPIFELKEVLTGKY-GVYWTGY------------STAVGFLMIHSVPSAPLWINWT 145 (151)
Q Consensus 79 ~~~~~~I~~~i~~~f~~~Gy~~IeTPv~E~~evf~~~~-Ge~~~~~------------~~~~~~~~~~~~~~~~~~~~~~ 145 (151)
+.+++.|.+.+.+.|.++||.+|+||+||+.++|..+. ++...+. ...+.++-...+|.++...+|.
T Consensus 2 ~~~~~~l~~~~~~~~~~~G~~ei~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LrP~~~~~i~~~~~~~~ 81 (235)
T cd00670 2 TALWRALERFLDDRMAEYGYQEILFPFLAPTVLFFKGGHLDGYRKEMYTFEDKGRELRDTDLVLRPAACEPIYQIFSGEI 81 (235)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEECCeEcCHHHHhhcCCcccchhhcCeeccCcccccCCeEEEecCCCHHHHHHHhccC
Confidence 46789999999999999999999999999999997653 2322111 2456777777777777777664
No 41
>PRK04173 glycyl-tRNA synthetase; Provisional
Probab=97.66 E-value=4.7e-05 Score=67.73 Aligned_cols=54 Identities=31% Similarity=0.423 Sum_probs=50.4
Q ss_pred cccCCCccccCChhhHHHHHHHHHHHHHHHHH--cCCccccCCccccHHhhhcccCC
Q psy1231 64 ILKTPKGTRDYGPDSTVVRNQVLDKIVKIFKK--HGAVTIDTPIFELKEVLTGKYGV 118 (151)
Q Consensus 64 ~~~~pkGtrD~lP~e~~~~~~I~~~i~~~f~~--~Gy~~IeTPv~E~~evf~~~~Ge 118 (151)
.|..+.|++||+|..+.+++.|++.|++.|.. +||.+|+||++-+.+|+.++ |.
T Consensus 23 iy~~~~g~~d~~P~G~~l~~~i~~~~r~~~~~~~~~~~ev~tp~i~~~~l~~~S-GH 78 (456)
T PRK04173 23 IYGGLAGFWDYGPLGVELKNNIKRAWWKSFVQEREDVVGIDSPIIMPPEVWEAS-GH 78 (456)
T ss_pred cccchhcccccChhhHHHHHHHHHHHHHHHHhccCCEEEEeccccCCHHHHhhc-CC
Confidence 67889999999999999999999999999988 89999999999999999764 64
No 42
>cd00935 GlyRS_RNA GlyRS_RNA binding domain. This short RNA-binding domain is found at the N-terminus of GlyRS in several higher eukaryote aminoacyl-tRNA synthetases (aaRSs). This domain consists of a helix-turn-helix structure , which is similar to other RNA-binding proteins. It is involved in both protein-RNA interactions by binding tRNA and protein-protein interactions, which are important for the formation of aaRSs into multienzyme complexes.
Probab=97.66 E-value=0.00011 Score=46.39 Aligned_cols=43 Identities=40% Similarity=0.543 Sum_probs=39.3
Q ss_pred HHHHHHHHHhhHHHHhhhcCCCChhhHHHHHHHHHHHHHhhch
Q psy1231 8 ADIQESIKAQGDVVRKLKSSKAPKEQIDEEVKKLLELKNQLKI 50 (151)
Q Consensus 8 ~~l~~~i~~qg~~VR~LK~~ka~k~~I~~~V~kLl~LK~ql~~ 50 (151)
..+...|..||+.||.||..++++..++.+|..|..+|..++.
T Consensus 2 ~~l~~~v~~qg~~vR~lk~~~a~~~~~~~a~~~L~~~k~~l~~ 44 (51)
T cd00935 2 APLRAAVKEQGDLVRKLKEEGAPDVDIKKAVAELKARKKLLED 44 (51)
T ss_pred hHHHHHHHHhhHHHHhhccccCcHHHHHHHHHHHHHHHHHhhh
Confidence 4578999999999999999999999999999999999998865
No 43
>KOG2298|consensus
Probab=97.48 E-value=9.7e-05 Score=66.34 Aligned_cols=59 Identities=22% Similarity=0.380 Sum_probs=53.5
Q ss_pred ccCcc-cccCCCccccCChhhHHHHHHHHHHHHHHHHH-cCCccccCCccccHHhhhcccCC
Q psy1231 59 STHKF-ILKTPKGTRDYGPDSTVVRNQVLDKIVKIFKK-HGAVTIDTPIFELKEVLTGKYGV 118 (151)
Q Consensus 59 ~~~~~-~~~~pkGtrD~lP~e~~~~~~I~~~i~~~f~~-~Gy~~IeTPv~E~~evf~~~~Ge 118 (151)
..++| .|..+.|.+||+|..|+++.+|.+.|+++|.. .++.+|+||++.+.+||.++ |.
T Consensus 25 y~~sf~IYgGVsGLyD~GP~Gcalk~Nil~~WRkhFilEE~MlEvdct~ltP~~VlkaS-GH 85 (599)
T KOG2298|consen 25 YDPSFAIYGGVSGLYDFGPPGCALKSNILSLWRKHFILEEDMLEVDCTMLTPEPVLKAS-GH 85 (599)
T ss_pred eccchhhhcCcccccccCCCchhhHHhHHHHHHHHHhhhhcceeeccCcCCcHHHhhcc-cc
Confidence 34566 78999999999999999999999999999987 99999999999999999774 65
No 44
>PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional
Probab=97.42 E-value=6.5e-05 Score=67.20 Aligned_cols=38 Identities=16% Similarity=0.282 Sum_probs=36.6
Q ss_pred ccCChhhHHHHHHHHHHHHHHHHHcCCccccCCccccH
Q psy1231 72 RDYGPDSTVVRNQVLDKIVKIFKKHGAVTIDTPIFELK 109 (151)
Q Consensus 72 rD~lP~e~~~~~~I~~~i~~~f~~~Gy~~IeTPv~E~~ 109 (151)
+|++|.++..+++|++.++++|..+||.+|+||++|..
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~f~~~Gf~e~~~p~vE~~ 262 (489)
T PRK04172 225 PKIYPGKKHPYREFIDEVRDILVEMGFEEMKGPLVETE 262 (489)
T ss_pred CCCCCCCCChHHHHHHHHHHHHHHCCCEEeeCCeeeec
Confidence 99999999999999999999999999999999999943
No 45
>COG0423 GRS1 Glycyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=97.12 E-value=0.00039 Score=63.00 Aligned_cols=54 Identities=33% Similarity=0.455 Sum_probs=50.5
Q ss_pred cccCCCccccCChhhHHHHHHHHHHHHHHHHH--cCCccccCCccccHHhhhcccCC
Q psy1231 64 ILKTPKGTRDYGPDSTVVRNQVLDKIVKIFKK--HGAVTIDTPIFELKEVLTGKYGV 118 (151)
Q Consensus 64 ~~~~pkGtrD~lP~e~~~~~~I~~~i~~~f~~--~Gy~~IeTPv~E~~evf~~~~Ge 118 (151)
.|...+|+.||.|-.+.++++|.+.|++.|.. -|+.+|+||++-+.+||.++ |.
T Consensus 25 IYGG~~GfyDYGPlG~~LK~nI~~~Wrk~fV~~~e~~~eIdtpii~p~~V~kAS-GH 80 (558)
T COG0423 25 IYGGLAGFYDYGPLGVELKNNIKEAWRKSFVTEREDVVEIDTPIILPEEVWKAS-GH 80 (558)
T ss_pred eecCcccccccCCccHHHHHHHHHHHHHHHeeccCCeEEecccccCcHHHhhhc-Cc
Confidence 78999999999999999999999999999986 68999999999999999875 65
No 46
>TIGR02367 PylS pyrrolysyl-tRNA synthetase. PylS is the archaeal enzyme responsible for charging the pyrrolysine tRNA, PylT, by ligating a free molecule of pyrrolysine. Pyrrolysine is encoded at an in-frame UAG (amber) at least in several corrinoid-dependent methyltransferases of the archaeal genera Methanosarcina and Methanococcoides, such as trimethylamine methyltransferase.
Probab=96.94 E-value=0.00039 Score=62.01 Aligned_cols=67 Identities=13% Similarity=0.089 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHcCCccccCCcc---ccHHhhhcccCCcccc----cchhhhhhHHhhCCCcchhhhhcc
Q psy1231 80 VVRNQVLDKIVKIFKKHGAVTIDTPIF---ELKEVLTGKYGVYWTG----YSTAVGFLMIHSVPSAPLWINWTN 146 (151)
Q Consensus 80 ~~~~~I~~~i~~~f~~~Gy~~IeTPv~---E~~evf~~~~Ge~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 146 (151)
.-.+.+++.++++|..|||.+|.||+| |++|.+....|.++.+ .+....+|-++..+++++..+++.
T Consensus 240 ~~~~~Led~IRevfvg~GFqEV~TPtLt~eE~~E~m~~~~g~eI~n~Iyk~ee~lvLRPdLTPsLaR~La~N~~ 313 (453)
T TIGR02367 240 DYLGKLERDITKFFVDRGFLEIKSPILIPAEYIERMGIDNDTELSKQIFRVDKNFCLRPMLAPNLYNYLRKLDR 313 (453)
T ss_pred cHHHHHHHHHHHHHHHCCCEEEECCeecchHHHHhhcCccCCcccccceEecCceEecccCHHHHHHHHHHhhh
Confidence 457999999999999999999999999 5666665544432221 133467777777778887776543
No 47
>TIGR00389 glyS_dimeric glycyl-tRNA synthetase, dimeric type. This model describes a glycyl-tRNA synthetase distinct from the two alpha and two beta chains of the tetrameric E. coli glycyl-tRNA synthetase. This enzyme is a homodimeric class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes His, Ser, Pro, and this set of glycyl-tRNA synthetases.
Probab=96.67 E-value=0.0019 Score=59.03 Aligned_cols=54 Identities=35% Similarity=0.538 Sum_probs=49.7
Q ss_pred cccCCCccccCChhhHHHHHHHHHHHHHHHH-HcCCccccCCccccHHhhhcccCC
Q psy1231 64 ILKTPKGTRDYGPDSTVVRNQVLDKIVKIFK-KHGAVTIDTPIFELKEVLTGKYGV 118 (151)
Q Consensus 64 ~~~~pkGtrD~lP~e~~~~~~I~~~i~~~f~-~~Gy~~IeTPv~E~~evf~~~~Ge 118 (151)
.|....|+.||+|-.+.++++|.+.|++.|. ..|+.+|+||++-+.+|+.++ |.
T Consensus 22 IYgG~~g~~dygP~G~~lk~ni~~~wr~~~v~~~~~~ei~~~~i~~~~v~~aS-Gh 76 (551)
T TIGR00389 22 IYGGLAGFWDYGPLGAVLKNNIKNAWRKFFIKNERVLEIDTPIITPEEVLKAS-GH 76 (551)
T ss_pred hccCccceeccCcchHHHHHHHHHHHHHHHHhcCCceEeeccccCCHHHHHhc-CC
Confidence 5778999999999999999999999999996 689999999999999999874 55
No 48
>PF00587 tRNA-synt_2b: tRNA synthetase class II core domain (G, H, P, S and T) This Prosite entry contains all class II enzymes. seryl tRNA synthetase structure; InterPro: IPR002314 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain includes the glycine, histidine, proline, threonine and serine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3UH0_A 3UGT_C 3UGQ_A 1B76_B 1GGM_B 1ATI_A 1ADY_C 1ADJ_C 2I4O_A 2I4M_B ....
Probab=95.77 E-value=0.008 Score=45.98 Aligned_cols=37 Identities=35% Similarity=0.397 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHH-HcCCccccCCccccHHhhhcccCC
Q psy1231 81 VRNQVLDKIVKIFK-KHGAVTIDTPIFELKEVLTGKYGV 118 (151)
Q Consensus 81 ~~~~I~~~i~~~f~-~~Gy~~IeTPv~E~~evf~~~~Ge 118 (151)
++++|.+.+.+.+. ++||.+|+||+|...+++.+ .|.
T Consensus 1 l~~~l~~~~~~~~~~~~G~~ev~~P~l~~~~~~~~-sg~ 38 (173)
T PF00587_consen 1 LRNALERFIREEFVLKFGFQEVDTPILIPSEVWEK-SGH 38 (173)
T ss_dssp HHHHHHHHHHHHHHHHTTEEEEB--SEEEHHHHHH-HSH
T ss_pred CHHHHHHHHHHHhHHhcCCEEEECCeEEehHHhhh-ccc
Confidence 57899999999999 99999999999999999987 454
No 49
>PRK14894 glycyl-tRNA synthetase; Provisional
Probab=95.35 E-value=0.015 Score=52.91 Aligned_cols=54 Identities=20% Similarity=0.294 Sum_probs=49.2
Q ss_pred cccCCCccccCChhhHHHHHHHHHHHHHHHH--HcCCccccCCccccHHhhhcccCC
Q psy1231 64 ILKTPKGTRDYGPDSTVVRNQVLDKIVKIFK--KHGAVTIDTPIFELKEVLTGKYGV 118 (151)
Q Consensus 64 ~~~~pkGtrD~lP~e~~~~~~I~~~i~~~f~--~~Gy~~IeTPv~E~~evf~~~~Ge 118 (151)
.|....|++||.|-.+.++++|.+.|.+.|. +-++.+|+||++-+..|+..+ |.
T Consensus 25 iYgg~~g~~DyGPlG~~lk~ni~~~W~~~~v~~~~~~~~id~~il~~~~v~~aS-GH 80 (539)
T PRK14894 25 IYGGLQGVYDYGPLGVELKNNIIADWWRTNVYERDDMEGLDAAILMNRLVWKYS-GH 80 (539)
T ss_pred ccCCcccccCcCchhHHHHHHHHHHHHHHHeeccCCEEEeeccccCCHhHeeec-cC
Confidence 6889999999999999999999999999995 678889999999999999775 55
No 50
>cd00770 SerRS_core Seryl-tRNA synthetase (SerRS) class II core catalytic domain. SerRS is responsible for the attachment of serine to the 3' OH group of ribose of the appropriate tRNA. This domain It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. SerRS synthetase is a homodimer.
Probab=95.24 E-value=0.023 Score=47.77 Aligned_cols=45 Identities=18% Similarity=0.305 Sum_probs=42.8
Q ss_pred ccccCChhhHHHHHHHHHHHHHHHHHcCCccccCCccccHHhhhc
Q psy1231 70 GTRDYGPDSTVVRNQVLDKIVKIFKKHGAVTIDTPIFELKEVLTG 114 (151)
Q Consensus 70 GtrD~lP~e~~~~~~I~~~i~~~f~~~Gy~~IeTPv~E~~evf~~ 114 (151)
|+.-+.|..+.+++.|.+.+.+.+.+.||.+|.||.|.+.+++.+
T Consensus 43 g~~~~~p~g~~l~~~l~~~~~~~~~~~G~~ev~~P~l~~~~l~~~ 87 (297)
T cd00770 43 RFYYLKGDGALLERALINFALDFLTKRGFTPVIPPFLVRKEVMEG 87 (297)
T ss_pred ceeEECCHHHHHHHHHHHHHHHHHHHCCCEEEECcccccHHHHhh
Confidence 578899999999999999999999999999999999999999965
No 51
>PRK09350 poxB regulator PoxA; Provisional
Probab=94.91 E-value=0.021 Score=48.32 Aligned_cols=35 Identities=23% Similarity=0.537 Sum_probs=31.2
Q ss_pred hHHHHHHHHHHHHHHHHHcCCccccCCccccHHhh
Q psy1231 78 STVVRNQVLDKIVKIFKKHGAVTIDTPIFELKEVL 112 (151)
Q Consensus 78 e~~~~~~I~~~i~~~f~~~Gy~~IeTPv~E~~evf 112 (151)
-...+..|.+.+++.|..+||.+|+||+|+.+.+.
T Consensus 4 ~l~~r~~i~~~ir~~f~~~gf~EV~TP~l~~~~~~ 38 (306)
T PRK09350 4 NLLKRAKIIAEIRRFFADRGVLEVETPILSQATVT 38 (306)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCeEecccCC
Confidence 45678999999999999999999999999987654
No 52
>cd00776 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class II core domain. Assignment to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs in the core domain. This family includes AsnRS as well as a subgroup of AspRS. AsnRS and AspRS are homodimers, which attach either asparagine or aspartate to the 3'OH group of ribose of the appropriate tRNA. While archaea lack asnRS, they possess a non-discriminating aspRS, which can mischarge Asp-tRNA with Asn. Subsequently, a tRNA-dependent aspartate amidotransferase converts the bound aspartate to asparagine. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=94.77 E-value=0.028 Score=47.86 Aligned_cols=36 Identities=17% Similarity=0.262 Sum_probs=31.4
Q ss_pred CChhhHHHHHHHHHHHHHHHHHcCCccccCCccccH
Q psy1231 74 YGPDSTVVRNQVLDKIVKIFKKHGAVTIDTPIFELK 109 (151)
Q Consensus 74 ~lP~e~~~~~~I~~~i~~~f~~~Gy~~IeTPv~E~~ 109 (151)
..-.-+.++..|.+.+++.|..+||.+|+||+++..
T Consensus 19 ~~~~~~~~rs~i~~~ir~~f~~~gf~eV~TP~l~~~ 54 (322)
T cd00776 19 KVQAIFRIRSEVLRAFREFLRENGFTEVHTPKITST 54 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCEEeeCCceecC
Confidence 344566789999999999999999999999999873
No 53
>TIGR00462 genX lysyl-tRNA synthetase-like protein GenX. Many Gram-negative bacteria have a protein closely homologous to the C-terminal region of lysyl-tRNA synthetase (LysS). Multiple sequence alignment of these proteins with the homologous regions of collected LysS proteins shows that these proteins form a distinct set rather than just similar truncations of LysS. The protein is termed GenX after its designation in E. coli. Interestingly, genX often is located near a homolog of lysine-2,3-aminomutase. Its function is unknown.
Probab=94.36 E-value=0.036 Score=46.85 Aligned_cols=30 Identities=23% Similarity=0.520 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHcCCccccCCccccH
Q psy1231 80 VVRNQVLDKIVKIFKKHGAVTIDTPIFELK 109 (151)
Q Consensus 80 ~~~~~I~~~i~~~f~~~Gy~~IeTPv~E~~ 109 (151)
.+|.+|.+.++++|..+||.+|+||+|+..
T Consensus 2 ~~rs~i~~~ir~~f~~~gF~EV~TP~l~~~ 31 (304)
T TIGR00462 2 RARARLLAAIRAFFAERGVLEVETPLLSPA 31 (304)
T ss_pred hHHHHHHHHHHHHHHHCCCEEEECCeEecC
Confidence 468999999999999999999999999866
No 54
>PRK09537 pylS pyrolysyl-tRNA synthetase; Reviewed
Probab=94.29 E-value=0.026 Score=50.16 Aligned_cols=32 Identities=25% Similarity=0.406 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHcCCccccCCccccHHhhh
Q psy1231 82 RNQVLDKIVKIFKKHGAVTIDTPIFELKEVLT 113 (151)
Q Consensus 82 ~~~I~~~i~~~f~~~Gy~~IeTPv~E~~evf~ 113 (151)
...|.+.++++|..+||.+|.||+|+..+.|.
T Consensus 206 ~s~Le~aIR~~f~~~GF~EV~TPtLt~ee~~e 237 (417)
T PRK09537 206 LGKLERDITKFFVDRGFLEIKSPILIPAEYIE 237 (417)
T ss_pred HHHHHHHHHHHHHHCCCEEEECCeeecHHHHH
Confidence 68999999999999999999999997766654
No 55
>cd00768 class_II_aaRS-like_core Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA. PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. These enzymes are usually homodimers. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. The substrate specificity of this reaction is further determined by additional domains. Intererestingly, this domain is also found is asparagine synthase A (AsnA), in the accessory subunit of mitochondrial polymerase gamma and in the bacterial ATP phosphoribosyltransferase regulatory subunit HisZ.
Probab=93.95 E-value=0.046 Score=41.76 Aligned_cols=33 Identities=24% Similarity=0.465 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHcCCccccCCccccHHhhhc
Q psy1231 82 RNQVLDKIVKIFKKHGAVTIDTPIFELKEVLTG 114 (151)
Q Consensus 82 ~~~I~~~i~~~f~~~Gy~~IeTPv~E~~evf~~ 114 (151)
++.+.+.+++.|..+||.+|.||+|+..+.+..
T Consensus 2 ~~~~~~~~r~~l~~~Gf~Ev~t~~l~~~~~~~~ 34 (211)
T cd00768 2 RSKIEQKLRRFMAELGFQEVETPIVEREPLLEK 34 (211)
T ss_pred HHHHHHHHHHHHHHcCCEEeEcceecHHHHHHH
Confidence 678999999999999999999999999987753
No 56
>cd00669 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase class II core domain. This domain is the core catalytic domain of class II aminoacyl-tRNA synthetases of the subgroup containing aspartyl, lysyl, and asparaginyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. Nearly all class II tRNA synthetases are dimers and enzymes in this subgroup are homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=91.77 E-value=0.12 Score=42.95 Aligned_cols=30 Identities=20% Similarity=0.505 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHcCCccccCCccccH
Q psy1231 80 VVRNQVLDKIVKIFKKHGAVTIDTPIFELK 109 (151)
Q Consensus 80 ~~~~~I~~~i~~~f~~~Gy~~IeTPv~E~~ 109 (151)
.++..|.+.+++.|..+||.+|+||+++..
T Consensus 2 ~~rs~i~~~ir~~f~~~gf~ev~tP~l~~~ 31 (269)
T cd00669 2 KVRSKIIKAIRDFMDDRGFLEVETPMLQKI 31 (269)
T ss_pred cHHHHHHHHHHHHHHHCCCEEEECCEEecc
Confidence 468899999999999999999999999865
No 57
>PLN02837 threonine-tRNA ligase
Probab=90.78 E-value=0.27 Score=45.39 Aligned_cols=49 Identities=20% Similarity=0.265 Sum_probs=45.5
Q ss_pred CCCccccCChhhHHHHHHHHHHHHHHHHHcCCccccCCccccHHhhhcc
Q psy1231 67 TPKGTRDYGPDSTVVRNQVLDKIVKIFKKHGAVTIDTPIFELKEVLTGK 115 (151)
Q Consensus 67 ~pkGtrD~lP~e~~~~~~I~~~i~~~f~~~Gy~~IeTPv~E~~evf~~~ 115 (151)
.-.|+.-|+|..+.+++.|.+.+++....+||.+|.||.+=..+++...
T Consensus 235 ~g~G~~~~~p~G~~l~~~L~~~~~~~~~~~G~~~v~tP~l~~~~l~~~s 283 (614)
T PLN02837 235 AGGGLVFWHPKGAIVRHIIEDSWKKMHFEHGYDLLYTPHVAKADLWKTS 283 (614)
T ss_pred cCCcceEEechHHHHHHHHHHHHHHHHHHCCCEEEECCccCCHHHHhhc
Confidence 3579999999999999999999999999999999999999999999653
No 58
>KOG1035|consensus
Probab=89.79 E-value=0.23 Score=49.46 Aligned_cols=73 Identities=25% Similarity=0.343 Sum_probs=52.2
Q ss_pred ccCChhhHHHHHHHHHHHHHHHHHcCCccccCCccccHHh---hhcccCCccccc-chhhhhhHHhhCCCcchhhhhc
Q psy1231 72 RDYGPDSTVVRNQVLDKIVKIFKKHGAVTIDTPIFELKEV---LTGKYGVYWTGY-STAVGFLMIHSVPSAPLWINWT 145 (151)
Q Consensus 72 rD~lP~e~~~~~~I~~~i~~~f~~~Gy~~IeTPv~E~~ev---f~~~~Ge~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 145 (151)
+++.+-...+++++...+.++|++||+.+++||-+-...- +.++.- +..+. -+-|.+.||||.|-+||++-++
T Consensus 925 ~~~~~~~~~l~~~v~e~~~~ifr~Hga~~l~tpp~~~~~~~~~~~~~~v-~~ld~sG~~v~Lp~DLr~pfar~vs~N~ 1001 (1351)
T KOG1035|consen 925 IQYTEINNELREYVVEEVVKIFRKHGAIELETPPLSLRNACAYFSRKAV-ELLDHSGDVVELPYDLRLPFARYVSRNS 1001 (1351)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHhcceeccCCccccccccchhcccee-eeecCCCCEEEeeccccchHHHHhhhch
Confidence 6777888889999999999999999999999994422210 001100 11111 3457899999999999998765
No 59
>TIGR00468 pheS phenylalanyl-tRNA synthetase, alpha subunit. Most phenylalanyl-tRNA synthetases are heterodimeric, with 2 alpha (pheS) and 2 beta (pheT) subunits. This model describes the alpha subunit, which shows some similarity to class II aminoacyl-tRNA ligases. Mitochondrial phenylalanyl-tRNA synthetase is a single polypeptide chain, active as a monomer, and similar to this chain rather than to the beta chain, but excluded from this model. An interesting feature of the alignment of all sequences captured by this model is a deep split between non-spirochete bacterial examples and all other examples; supporting this split is a relative deletion of about 50 residues in the former set between two motifs well conserved throughout the alignment.
Probab=87.72 E-value=1.7 Score=36.51 Aligned_cols=46 Identities=24% Similarity=0.267 Sum_probs=34.3
Q ss_pred cccccCCCccccCChhhHHHHHHHHHHHHHHHHHcCCccccCCccccH
Q psy1231 62 KFILKTPKGTRDYGPDSTVVRNQVLDKIVKIFKKHGAVTIDTPIFELK 109 (151)
Q Consensus 62 ~~~~~~pkGtrD~lP~e~~~~~~I~~~i~~~f~~~Gy~~IeTPv~E~~ 109 (151)
.+.+..|.+. ..+......+.+.+.++++|...||.++.||.|+..
T Consensus 56 ~~d~tlp~~~--~~~g~~~p~~~~~~~ir~~l~~~Gf~Ev~~~~~~s~ 101 (294)
T TIGR00468 56 TYDVTLPGTK--IYPGSLHPLTRVIDEIRDIFLGLGFTEEKGPEVETD 101 (294)
T ss_pred cCcccCCCCC--CCCCCcCHHHHHHHHHHHHHHHCCCEEeeCCceecc
Confidence 4455555432 233355557888999999999999999999999876
No 60
>COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=87.48 E-value=0.37 Score=44.64 Aligned_cols=50 Identities=18% Similarity=0.266 Sum_probs=46.7
Q ss_pred cCCCccccCChhhHHHHHHHHHHHHHHHHHcCCccccCCccccHHhhhcc
Q psy1231 66 KTPKGTRDYGPDSTVVRNQVLDKIVKIFKKHGAVTIDTPIFELKEVLTGK 115 (151)
Q Consensus 66 ~~pkGtrD~lP~e~~~~~~I~~~i~~~f~~~Gy~~IeTPv~E~~evf~~~ 115 (151)
....|+.=|+|..+.+++.+++-++.....+||.+|.||++-..++...+
T Consensus 207 ~~~~G~~~~~pkG~~ir~~le~y~~~~~~~~Gy~~V~TP~~~~~~l~~~S 256 (589)
T COG0441 207 EEGPGLPFWHPKGATIRNLLEDYVRTKLRSYGYQEVKTPVLADLELWELS 256 (589)
T ss_pred ccCCcceEECCCcccHHHHHHHHHHHHHHhcCceEecCCeeeecccchhc
Confidence 47889999999999999999999999999999999999999999998654
No 61
>cd00777 AspRS_core Asp tRNA synthetase (aspRS) class II core domain. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. AspRS is a homodimer, which attaches a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. AspRS in this family differ from those found in the AsxRS family by a GAD insert in the core domain.
Probab=87.38 E-value=0.43 Score=39.97 Aligned_cols=29 Identities=31% Similarity=0.576 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHcCCccccCCcccc
Q psy1231 80 VVRNQVLDKIVKIFKKHGAVTIDTPIFEL 108 (151)
Q Consensus 80 ~~~~~I~~~i~~~f~~~Gy~~IeTPv~E~ 108 (151)
.+|..|...+++.|...||.+|+||++-.
T Consensus 2 ~~Rs~i~~~iR~f~~~~gfiEV~TP~L~~ 30 (280)
T cd00777 2 RLRSRVIKAIRNFLDEQGFVEIETPILTK 30 (280)
T ss_pred chHHHHHHHHHHHHHHCCCEEEeCCeeec
Confidence 46889999999999999999999999964
No 62
>PRK06462 asparagine synthetase A; Reviewed
Probab=86.47 E-value=0.68 Score=39.67 Aligned_cols=35 Identities=17% Similarity=0.205 Sum_probs=30.0
Q ss_pred ChhhHHHHHHHHHHHHHHHHHcCCccccCCccccH
Q psy1231 75 GPDSTVVRNQVLDKIVKIFKKHGAVTIDTPIFELK 109 (151)
Q Consensus 75 lP~e~~~~~~I~~~i~~~f~~~Gy~~IeTPv~E~~ 109 (151)
.-.-..+|..|...+++.|...||.+|+||++-..
T Consensus 26 ~~~il~~Rs~i~~~iR~ff~~~~f~EV~TP~l~~~ 60 (335)
T PRK06462 26 YRKVLKVQSSILRYTREFLDGRGFVEVLPPIISPS 60 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEEeCCeEecC
Confidence 34456788999999999999999999999998643
No 63
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=86.21 E-value=1 Score=39.81 Aligned_cols=45 Identities=18% Similarity=0.289 Sum_probs=41.7
Q ss_pred cccCChhhHHHHHHHHHHHHHHHHHcCCccccCCccccHHhhhcc
Q psy1231 71 TRDYGPDSTVVRNQVLDKIVKIFKKHGAVTIDTPIFELKEVLTGK 115 (151)
Q Consensus 71 trD~lP~e~~~~~~I~~~i~~~f~~~Gy~~IeTPv~E~~evf~~~ 115 (151)
+.=+.|..+.+++.|.+.+.+.+..+||.+|.||.|=..+++.+.
T Consensus 165 ~~~~~p~g~~l~~aL~~~~~~~~~~~G~~~v~~P~lv~~~~~~~~ 209 (418)
T TIGR00414 165 FYYLKNDGAKLERALINFMLDLLEKNGYQEIYPPYLVNEESLDGT 209 (418)
T ss_pred eeeeccHHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHhhc
Confidence 667999999999999999999999999999999999999999653
No 64
>PTZ00417 lysine-tRNA ligase; Provisional
Probab=85.47 E-value=0.74 Score=42.65 Aligned_cols=32 Identities=16% Similarity=0.511 Sum_probs=28.1
Q ss_pred hHHHHHHHHHHHHHHHHHcCCccccCCccccH
Q psy1231 78 STVVRNQVLDKIVKIFKKHGAVTIDTPIFELK 109 (151)
Q Consensus 78 e~~~~~~I~~~i~~~f~~~Gy~~IeTPv~E~~ 109 (151)
-..+|..|...+++.|...||.+|+||++-..
T Consensus 252 ifr~RS~Ii~aiR~Ff~~rGFlEVeTPiL~~~ 283 (585)
T PTZ00417 252 TFITRTKIINYLRNFLNDRGFIEVETPTMNLV 283 (585)
T ss_pred HHHHHHHHHHHHHHHHHHCCeEEEeCCeeecc
Confidence 34578999999999999999999999999654
No 65
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated
Probab=85.26 E-value=2.3 Score=36.94 Aligned_cols=45 Identities=22% Similarity=0.228 Sum_probs=35.2
Q ss_pred cccccCCCccccCChhhHHHHHHHHHHHHHHHHHcCCccccCCcccc
Q psy1231 62 KFILKTPKGTRDYGPDSTVVRNQVLDKIVKIFKKHGAVTIDTPIFEL 108 (151)
Q Consensus 62 ~~~~~~pkGtrD~lP~e~~~~~~I~~~i~~~f~~~Gy~~IeTPv~E~ 108 (151)
.+.+..|. +-+.+....-.+.+.+.++++|...||.++++|.+|.
T Consensus 92 ~~d~t~p~--~~~~~G~~HPl~~~~~~Ir~if~~mGF~ev~gpeIes 136 (339)
T PRK00488 92 TIDVTLPG--RRIELGSLHPITQTIEEIEDIFVGMGFEVAEGPEIET 136 (339)
T ss_pred cccccCCC--CCCCCCCCCHHHHHHHHHHHHHHhCCCEEEeCCcccc
Confidence 35555553 4455556667889999999999999999999999985
No 66
>PRK05159 aspC aspartyl-tRNA synthetase; Provisional
Probab=85.12 E-value=0.89 Score=40.31 Aligned_cols=31 Identities=23% Similarity=0.275 Sum_probs=27.7
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCccccCCccc
Q psy1231 77 DSTVVRNQVLDKIVKIFKKHGAVTIDTPIFE 107 (151)
Q Consensus 77 ~e~~~~~~I~~~i~~~f~~~Gy~~IeTPv~E 107 (151)
.-+.+|..|...+++.|...||.+|+||++-
T Consensus 134 ~~l~~Rs~i~~~iR~ff~~~gf~EV~TP~L~ 164 (437)
T PRK05159 134 AIFKIRSEVLRAFREFLYENGFTEIFTPKIV 164 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEeCCccc
Confidence 4556789999999999999999999999993
No 67
>cd00775 LysRS_core Lys_tRNA synthetase (LysRS) class II core domain. Class II LysRS is a dimer which attaches a lysine to the 3' OH group of ribose of the appropriate tRNA. Its assignment to class II aaRS is based upon its structure and the presence of three characteristic sequence motifs in the core domain. It is found in eukaryotes as well as some prokaryotes and archaea. However, LysRS belongs to class I aaRS's in some prokaryotes and archaea. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=84.57 E-value=1 Score=38.45 Aligned_cols=31 Identities=23% Similarity=0.530 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHcCCccccCCccccH
Q psy1231 79 TVVRNQVLDKIVKIFKKHGAVTIDTPIFELK 109 (151)
Q Consensus 79 ~~~~~~I~~~i~~~f~~~Gy~~IeTPv~E~~ 109 (151)
..++..|...+++.|...||.+|+||++-..
T Consensus 8 l~~Rs~i~~~iR~ff~~~gf~EV~TP~L~~~ 38 (329)
T cd00775 8 FIVRSKIISYIRKFLDDRGFLEVETPMLQPI 38 (329)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEECCccccC
Confidence 4578899999999999999999999999433
No 68
>COG2269 Truncated, possibly inactive, lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=84.54 E-value=1.2 Score=38.27 Aligned_cols=33 Identities=21% Similarity=0.556 Sum_probs=28.6
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCccccCCccccH
Q psy1231 77 DSTVVRNQVLDKIVKIFKKHGAVTIDTPIFELK 109 (151)
Q Consensus 77 ~e~~~~~~I~~~i~~~f~~~Gy~~IeTPv~E~~ 109 (151)
+....|..|.+.|+..|...||.+|+||++-..
T Consensus 14 ~~ll~Ra~i~~~iR~FF~erg~lEVeTp~Ls~a 46 (322)
T COG2269 14 DNLLKRAAIIAAIRRFFAERGVLEVETPALSVA 46 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHcCceEecchHhhcC
Confidence 346679999999999999999999999987443
No 69
>TIGR00458 aspS_arch aspartyl-tRNA synthetase, archaeal type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_arch, represents aspartyl-tRNA synthetases from the eukaryotic cytosol and from the Archaea. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn).
Probab=84.44 E-value=1 Score=39.96 Aligned_cols=31 Identities=19% Similarity=0.399 Sum_probs=27.3
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCccccCCccc
Q psy1231 77 DSTVVRNQVLDKIVKIFKKHGAVTIDTPIFE 107 (151)
Q Consensus 77 ~e~~~~~~I~~~i~~~f~~~Gy~~IeTPv~E 107 (151)
.-..++..|...+++.|...||.+|+||++-
T Consensus 131 ~~~r~Rs~i~~~iR~ff~~~gf~EV~TP~L~ 161 (428)
T TIGR00458 131 AIFRIRSGVLESVREFLAEEGFIEVHTPKLV 161 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEeCCcee
Confidence 4456788999999999999999999999974
No 70
>cd00677 S15_NS1_EPRS_RNA-bind S15/NS1/EPRS_RNA-binding domain. This short domain consists of a helix-turn-helix structure, which can bind to several types of RNA. It is found in the ribosomal protein S15, the influenza A viral nonstructural protein (NSA) and in several eukaryotic aminoacyl tRNA synthetases (aaRSs), where it occurs as a single or a repeated unit. It is involved in both protein-RNA interactions by binding tRNA and protein-protein interactions in the formation of tRNA-synthetases into multienzyme complexes. While this domain lacks significant sequence similarity between the subgroups in which it is found, they share similar electrostatic surface potentials and thus are likely to bind to RNA via the same mechanism.
Probab=84.38 E-value=1.6 Score=26.67 Aligned_cols=38 Identities=34% Similarity=0.324 Sum_probs=31.2
Q ss_pred HHHHHhhHHHHhhhcCCC-------ChhhHHHHHHHHHHHHHhhc
Q psy1231 12 ESIKAQGDVVRKLKSSKA-------PKEQIDEEVKKLLELKNQLK 49 (151)
Q Consensus 12 ~~i~~qg~~VR~LK~~ka-------~k~~I~~~V~kLl~LK~ql~ 49 (151)
.+|+.++..++.|++..+ ++..+...|+++..|++.|+
T Consensus 2 vqia~lt~~i~~L~~hl~~~~kD~~~kr~L~~~v~kr~rLl~ylk 46 (46)
T cd00677 2 VQIALLTERIRNLKEHLAKNKKDKHSKRGLDLLVSKRLRLLKYLK 46 (46)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHHHHHhC
Confidence 467888999999887765 78889999999998887763
No 71
>PRK12445 lysyl-tRNA synthetase; Reviewed
Probab=83.56 E-value=1.1 Score=40.77 Aligned_cols=31 Identities=26% Similarity=0.576 Sum_probs=27.4
Q ss_pred hHHHHHHHHHHHHHHHHHcCCccccCCcccc
Q psy1231 78 STVVRNQVLDKIVKIFKKHGAVTIDTPIFEL 108 (151)
Q Consensus 78 e~~~~~~I~~~i~~~f~~~Gy~~IeTPv~E~ 108 (151)
-..+|..|...+++.|...||.+|+||++-.
T Consensus 183 ~~r~Rs~i~~~iR~f~~~~gFiEVeTPiL~~ 213 (505)
T PRK12445 183 TFVVRSKILAAIRQFMVARGFMEVETPMMQV 213 (505)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEeeCCeeEe
Confidence 4557899999999999999999999999943
No 72
>COG0442 ProS Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=83.52 E-value=1.3 Score=40.46 Aligned_cols=52 Identities=23% Similarity=0.183 Sum_probs=46.3
Q ss_pred cccccCCCccccCChhhHHHHHHHHHHHHHHHHHcCCccccCCccccHHhhh
Q psy1231 62 KFILKTPKGTRDYGPDSTVVRNQVLDKIVKIFKKHGAVTIDTPIFELKEVLT 113 (151)
Q Consensus 62 ~~~~~~pkGtrD~lP~e~~~~~~I~~~i~~~f~~~Gy~~IeTPv~E~~evf~ 113 (151)
-|.-+..+|++-|+|-...++++|.+.+++-+.+.|.++|--|+|=+.++-.
T Consensus 30 g~i~~~~~G~y~~lP~g~rv~~kI~~iir~em~~~G~~Evl~P~L~p~eLwk 81 (500)
T COG0442 30 GMIRKPVKGLYVWLPLGLRVLEKIENIIREEMDKIGAQEVLFPTLIPAELWK 81 (500)
T ss_pred CceecccCceEEECccHHHHHHHHHHHHHHHHHhcCceEEechhcCHHHHHH
Confidence 3434489999999999999999999999999999999999999999966653
No 73
>PF00152 tRNA-synt_2: tRNA synthetases class II (D, K and N) ; InterPro: IPR004364 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry includes the asparagine, aspartic acid and lysine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1N9W_B 1BBU_A 1BBW_A 4EX5_B 3E9I_A 3E9H_C 3A74_C 1NNH_A 3M4P_C 3M4Q_B ....
Probab=83.25 E-value=1.1 Score=37.80 Aligned_cols=32 Identities=31% Similarity=0.580 Sum_probs=24.4
Q ss_pred hHHHHHHHHHHHHHHHHHcCCccccCCccccH
Q psy1231 78 STVVRNQVLDKIVKIFKKHGAVTIDTPIFELK 109 (151)
Q Consensus 78 e~~~~~~I~~~i~~~f~~~Gy~~IeTPv~E~~ 109 (151)
-..++..|.+.+++.|...||.+|+||++-..
T Consensus 21 ~~~~rs~i~~~ir~ff~~~~f~Ev~tP~l~~~ 52 (335)
T PF00152_consen 21 ILRIRSAILQAIREFFDKRGFIEVDTPILTSS 52 (335)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-EEE---SEESS
T ss_pred HHHHHHHHHHHHHHHHHhCCceEEcCceeecc
Confidence 45678999999999999999999999998655
No 74
>KOG1885|consensus
Probab=83.22 E-value=1 Score=41.07 Aligned_cols=32 Identities=19% Similarity=0.479 Sum_probs=27.4
Q ss_pred hHHHHHHHHHHHHHHHHHcCCccccCCccccH
Q psy1231 78 STVVRNQVLDKIVKIFKKHGAVTIDTPIFELK 109 (151)
Q Consensus 78 e~~~~~~I~~~i~~~f~~~Gy~~IeTPv~E~~ 109 (151)
-...|.+|+.-|++.+...||.+|+||++...
T Consensus 224 ~f~~RakII~~iRkfld~rgFlEVETPmmn~i 255 (560)
T KOG1885|consen 224 RFRIRAKIISYIRKFLDSRGFLEVETPMMNMI 255 (560)
T ss_pred HHHHHHHHHHHHHHHhhhcCceEecchhhccc
Confidence 34567899999999999999999999998653
No 75
>PRK03932 asnC asparaginyl-tRNA synthetase; Validated
Probab=82.97 E-value=1.3 Score=39.59 Aligned_cols=33 Identities=30% Similarity=0.497 Sum_probs=28.6
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCccccCCccccH
Q psy1231 77 DSTVVRNQVLDKIVKIFKKHGAVTIDTPIFELK 109 (151)
Q Consensus 77 ~e~~~~~~I~~~i~~~f~~~Gy~~IeTPv~E~~ 109 (151)
.-..++..|...+++.|...||.+|+||++-..
T Consensus 131 ~~l~~Rs~i~~~iR~f~~~~gf~EV~TP~L~~~ 163 (450)
T PRK03932 131 AVMRIRNTLAQAIHEFFNENGFVWVDTPIITAS 163 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEecCCceecc
Confidence 345678999999999999999999999999654
No 76
>PRK00484 lysS lysyl-tRNA synthetase; Reviewed
Probab=82.94 E-value=1.2 Score=40.20 Aligned_cols=31 Identities=16% Similarity=0.529 Sum_probs=27.2
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCccccCCccc
Q psy1231 77 DSTVVRNQVLDKIVKIFKKHGAVTIDTPIFE 107 (151)
Q Consensus 77 ~e~~~~~~I~~~i~~~f~~~Gy~~IeTPv~E 107 (151)
.-..+|..|...+++.|...||.+|+||++-
T Consensus 170 ~~~r~Rs~i~~~iR~f~~~~gF~EVeTPiL~ 200 (491)
T PRK00484 170 ETFRKRSKIISAIRRFLDNRGFLEVETPMLQ 200 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEECCcee
Confidence 3445788999999999999999999999995
No 77
>PLN02603 asparaginyl-tRNA synthetase
Probab=82.63 E-value=1.2 Score=41.13 Aligned_cols=32 Identities=28% Similarity=0.417 Sum_probs=27.8
Q ss_pred hHHHHHHHHHHHHHHHHHcCCccccCCccccH
Q psy1231 78 STVVRNQVLDKIVKIFKKHGAVTIDTPIFELK 109 (151)
Q Consensus 78 e~~~~~~I~~~i~~~f~~~Gy~~IeTPv~E~~ 109 (151)
-+.+|..|...+++.|..+||.+|+||++-..
T Consensus 225 i~RiRS~i~~air~ff~~~gF~eV~TPiLt~s 256 (565)
T PLN02603 225 VARVRNALAYATHKFFQENGFVWVSSPIITAS 256 (565)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCeeccc
Confidence 34678889999999999999999999999654
No 78
>TIGR00499 lysS_bact lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial. This model represents the lysyl-tRNA synthetases that are class II amino-acyl tRNA synthetases. It includes all eukaryotic and most bacterial examples of the enzyme, but not archaeal or spirochete forms.
Probab=82.61 E-value=1.2 Score=40.27 Aligned_cols=32 Identities=19% Similarity=0.615 Sum_probs=27.5
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCccccCCcccc
Q psy1231 77 DSTVVRNQVLDKIVKIFKKHGAVTIDTPIFEL 108 (151)
Q Consensus 77 ~e~~~~~~I~~~i~~~f~~~Gy~~IeTPv~E~ 108 (151)
.-..+|..|...+++.|...||.+|+||++-.
T Consensus 170 ~~~r~Rs~i~~~iR~fl~~~gF~EVeTP~L~~ 201 (496)
T TIGR00499 170 QTFLVRSKIIKAIRRFLDDRGFIEVETPMLQV 201 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHCcCEEEeCCeeec
Confidence 34457889999999999999999999999954
No 79
>PRK03991 threonyl-tRNA synthetase; Validated
Probab=82.51 E-value=1.3 Score=41.27 Aligned_cols=46 Identities=22% Similarity=0.356 Sum_probs=41.2
Q ss_pred CCccccCChhhHHHHHHHHHHHHHHHHHcCCccccCCccccHHhhh
Q psy1231 68 PKGTRDYGPDSTVVRNQVLDKIVKIFKKHGAVTIDTPIFELKEVLT 113 (151)
Q Consensus 68 pkGtrD~lP~e~~~~~~I~~~i~~~f~~~Gy~~IeTPv~E~~evf~ 113 (151)
..|+.=|+|....+++.|.+.+++.+..+||.+|.||.+-..+++.
T Consensus 216 ~~G~~~~~P~G~~i~~~L~~~~~~~~~~~G~~~V~tP~~~~~~~~~ 261 (613)
T PRK03991 216 DVGHMRYYPKGRLIRDLLEDYVYNLVVELGAMPVETPIMYDLSHPA 261 (613)
T ss_pred CeeeEEEEcHHHHHHHHHHHHHHHHHHHCCCEEEECCeecChhHHh
Confidence 5688899999999999999999999999999999999996665553
No 80
>TIGR00459 aspS_bact aspartyl-tRNA synthetase, bacterial type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_bact, represents aspartyl-tRNA synthetases from the Bacteria and from mitochondria. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn). This model generates very low scores for the archaeal type of aspS and for asnS; scores between the trusted and noise cutoffs represent fragmentary sequences.
Probab=82.17 E-value=1.3 Score=41.06 Aligned_cols=31 Identities=19% Similarity=0.446 Sum_probs=27.4
Q ss_pred hHHHHHHHHHHHHHHHHHcCCccccCCcccc
Q psy1231 78 STVVRNQVLDKIVKIFKKHGAVTIDTPIFEL 108 (151)
Q Consensus 78 e~~~~~~I~~~i~~~f~~~Gy~~IeTPv~E~ 108 (151)
-..+|..|...+++.|...||.+|+||++-.
T Consensus 137 ~lr~Rs~i~~~iR~ff~~~gFiEVeTP~L~~ 167 (583)
T TIGR00459 137 RLKLRHKVTKAVRNFLDQQGFLEIETPMLTK 167 (583)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCeecc
Confidence 4467899999999999999999999999853
No 81
>PTZ00385 lysyl-tRNA synthetase; Provisional
Probab=82.04 E-value=1.3 Score=41.71 Aligned_cols=30 Identities=20% Similarity=0.457 Sum_probs=26.8
Q ss_pred hHHHHHHHHHHHHHHHHHcCCccccCCccc
Q psy1231 78 STVVRNQVLDKIVKIFKKHGAVTIDTPIFE 107 (151)
Q Consensus 78 e~~~~~~I~~~i~~~f~~~Gy~~IeTPv~E 107 (151)
-..+|..|...+++.|...||.+|+||+|-
T Consensus 232 ifr~Rs~I~~aiR~ff~~~gFlEVeTPiL~ 261 (659)
T PTZ00385 232 TIKKRHVMLQALRDYFNERNFVEVETPVLH 261 (659)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEeeCCEee
Confidence 445789999999999999999999999993
No 82
>TIGR00457 asnS asparaginyl-tRNA synthetase. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, asnS, represents asparaginyl-tRNA synthetases from the three domains of life. Some species lack this enzyme and charge tRNA(asn) by misacylation with Asp, followed by transamidation of Asp to Asn.
Probab=81.43 E-value=1.5 Score=39.25 Aligned_cols=32 Identities=25% Similarity=0.417 Sum_probs=28.0
Q ss_pred hHHHHHHHHHHHHHHHHHcCCccccCCccccH
Q psy1231 78 STVVRNQVLDKIVKIFKKHGAVTIDTPIFELK 109 (151)
Q Consensus 78 e~~~~~~I~~~i~~~f~~~Gy~~IeTPv~E~~ 109 (151)
-..+|..|...+++.|...||.+|+||++-..
T Consensus 135 ~lr~Rs~i~~~~r~~~~~~gf~eV~TP~l~~~ 166 (453)
T TIGR00457 135 VMRVRNALSQAIHRYFQENGFTWVSPPILTSN 166 (453)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEecCCeEeec
Confidence 35678999999999999999999999999643
No 83
>PRK12820 bifunctional aspartyl-tRNA synthetase/aspartyl/glutamyl-tRNA amidotransferase subunit C; Provisional
Probab=80.97 E-value=1.6 Score=41.37 Aligned_cols=32 Identities=22% Similarity=0.429 Sum_probs=27.8
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCccccCCcccc
Q psy1231 77 DSTVVRNQVLDKIVKIFKKHGAVTIDTPIFEL 108 (151)
Q Consensus 77 ~e~~~~~~I~~~i~~~f~~~Gy~~IeTPv~E~ 108 (151)
.-+.+|..|...+++.|...||.+|+||++-.
T Consensus 154 ~~lr~Rs~i~~~iR~fl~~~gFiEVeTPiL~~ 185 (706)
T PRK12820 154 DHLAKRHRIIKCARDFLDSRGFLEIETPILTK 185 (706)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEeCCcccc
Confidence 34557889999999999999999999999853
No 84
>PLN02502 lysyl-tRNA synthetase
Probab=80.76 E-value=1.6 Score=40.25 Aligned_cols=31 Identities=16% Similarity=0.470 Sum_probs=27.3
Q ss_pred hHHHHHHHHHHHHHHHHHcCCccccCCcccc
Q psy1231 78 STVVRNQVLDKIVKIFKKHGAVTIDTPIFEL 108 (151)
Q Consensus 78 e~~~~~~I~~~i~~~f~~~Gy~~IeTPv~E~ 108 (151)
-..+|..|...+++.|...||.+|+||++-.
T Consensus 228 i~r~Rs~i~~~iR~fl~~~gF~EVeTPiL~~ 258 (553)
T PLN02502 228 IFRTRAKIISYIRRFLDDRGFLEVETPMLNM 258 (553)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCeeec
Confidence 3457889999999999999999999999954
No 85
>COG1190 LysU Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=80.68 E-value=1.7 Score=39.69 Aligned_cols=30 Identities=17% Similarity=0.503 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHcCCccccCCccccH
Q psy1231 80 VVRNQVLDKIVKIFKKHGAVTIDTPIFELK 109 (151)
Q Consensus 80 ~~~~~I~~~i~~~f~~~Gy~~IeTPv~E~~ 109 (151)
..|..|++.|++.+...||.+|+||++-..
T Consensus 181 ~~Rs~ii~~iR~fl~~~gFlEVETP~lq~i 210 (502)
T COG1190 181 IKRSKIIRAIREFLDDRGFLEVETPMLQPI 210 (502)
T ss_pred HHHHHHHHHHHHHHHHCCCeEecccccccc
Confidence 356789999999999999999999988543
No 86
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=80.29 E-value=2.2 Score=37.82 Aligned_cols=46 Identities=13% Similarity=0.230 Sum_probs=40.6
Q ss_pred ccccCChhhHHHHHHHHHHHHHHHH-HcCCccccCCccccHHhhhcc
Q psy1231 70 GTRDYGPDSTVVRNQVLDKIVKIFK-KHGAVTIDTPIFELKEVLTGK 115 (151)
Q Consensus 70 GtrD~lP~e~~~~~~I~~~i~~~f~-~~Gy~~IeTPv~E~~evf~~~ 115 (151)
|+.-+.|..+.+++.|.+.+.+... .+||.+|.||.|=..+++.+.
T Consensus 161 g~~~l~p~ga~L~~aL~~~~~~~~~~~~G~~ev~~P~lv~~~~~~~~ 207 (425)
T PRK05431 161 RFYVLKGDGARLERALIQFMLDLHTEEHGYTEVIPPYLVNEESMYGT 207 (425)
T ss_pred eeEEECcHHHHHHHHHHHHHHHHHHHhcCCEEEeccccccHHHHhhc
Confidence 3667779999999999999988777 899999999999999998654
No 87
>PLN02532 asparagine-tRNA synthetase
Probab=80.20 E-value=1.6 Score=40.83 Aligned_cols=34 Identities=24% Similarity=0.419 Sum_probs=29.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHcCCccccCCccccH
Q psy1231 76 PDSTVVRNQVLDKIVKIFKKHGAVTIDTPIFELK 109 (151)
Q Consensus 76 P~e~~~~~~I~~~i~~~f~~~Gy~~IeTPv~E~~ 109 (151)
-.-+.+|..|...+++.|..+||.+|+||+|-..
T Consensus 232 ~ailRiRS~i~~aiR~ff~~~GFiEV~TPiLT~s 265 (633)
T PLN02532 232 ASVTRVRSALTHATHTFFQDHGFLYVQVPIITTT 265 (633)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEeeCCeeccc
Confidence 3456778999999999999999999999999544
No 88
>PRK00476 aspS aspartyl-tRNA synthetase; Validated
Probab=79.88 E-value=1.7 Score=40.21 Aligned_cols=32 Identities=25% Similarity=0.460 Sum_probs=27.5
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCccccCCcccc
Q psy1231 77 DSTVVRNQVLDKIVKIFKKHGAVTIDTPIFEL 108 (151)
Q Consensus 77 ~e~~~~~~I~~~i~~~f~~~Gy~~IeTPv~E~ 108 (151)
.-..+|..|...+++.|...||.+|+||++-.
T Consensus 139 ~~l~~Rs~i~~~iR~ff~~~gFiEV~TP~L~~ 170 (588)
T PRK00476 139 KNLKLRSKVTSAIRNFLDDNGFLEIETPILTK 170 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEECCeeec
Confidence 34456799999999999999999999999854
No 89
>PRK00960 seryl-tRNA synthetase; Provisional
Probab=78.85 E-value=2.2 Score=39.01 Aligned_cols=50 Identities=18% Similarity=0.089 Sum_probs=44.8
Q ss_pred cCCCccccCChhhHHHHHHHHHHHHHH-HHHcCCccccCCccccHHhhhcc
Q psy1231 66 KTPKGTRDYGPDSTVVRNQVLDKIVKI-FKKHGAVTIDTPIFELKEVLTGK 115 (151)
Q Consensus 66 ~~pkGtrD~lP~e~~~~~~I~~~i~~~-f~~~Gy~~IeTPv~E~~evf~~~ 115 (151)
-..+|+.=+.|....+++.+.+.+.+. +.++||++|.+|.+=..+++.+.
T Consensus 210 ~~G~G~~~~~p~Ga~L~~aL~~~i~d~~~~k~Gyeev~~P~Li~~ell~ks 260 (517)
T PRK00960 210 FPGRGQWFYTPPMTKLFRAFEKLVIEEVLKPLGFDECLFPKLIPLEVMYKM 260 (517)
T ss_pred cCCCceEEEEChHHHHHHHHHHHHHHhhHhhcCCeEEECCcccCHHHHhhc
Confidence 347899999999999999999999865 78899999999999999999765
No 90
>PTZ00425 asparagine-tRNA ligase; Provisional
Probab=78.54 E-value=2 Score=39.91 Aligned_cols=36 Identities=19% Similarity=0.279 Sum_probs=30.2
Q ss_pred ChhhHHHHHHHHHHHHHHHHHcCCccccCCccccHH
Q psy1231 75 GPDSTVVRNQVLDKIVKIFKKHGAVTIDTPIFELKE 110 (151)
Q Consensus 75 lP~e~~~~~~I~~~i~~~f~~~Gy~~IeTPv~E~~e 110 (151)
+-.-+.+|..|...+++.|...||.+|.||++--.+
T Consensus 211 ~~avlRiRs~l~~a~r~ff~~~gF~eI~TPiit~s~ 246 (586)
T PTZ00425 211 ISSVIRIRNALAIATHLFFQSRGFLYIHTPLITTSD 246 (586)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEeeCCeecccC
Confidence 334567889999999999999999999999995543
No 91
>PLN02850 aspartate-tRNA ligase
Probab=78.48 E-value=2.1 Score=39.11 Aligned_cols=28 Identities=25% Similarity=0.356 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHcCCccccCCcc
Q psy1231 79 TVVRNQVLDKIVKIFKKHGAVTIDTPIF 106 (151)
Q Consensus 79 ~~~~~~I~~~i~~~f~~~Gy~~IeTPv~ 106 (151)
..++..|...+++.|...||.+|+||++
T Consensus 225 frirs~i~~~~R~fl~~~gF~EV~TP~L 252 (530)
T PLN02850 225 FRIQSQVCNLFREFLLSKGFVEIHTPKL 252 (530)
T ss_pred HHHHHHHHHHHHHHHHHCCcEEEeCCcc
Confidence 4567889999999999999999999999
No 92
>KOG1637|consensus
Probab=78.18 E-value=2.4 Score=38.65 Aligned_cols=50 Identities=22% Similarity=0.280 Sum_probs=45.0
Q ss_pred cCCCccccCChhhHHHHHHHHHHHHHHHHHcCCccccCCccccHHhhhcc
Q psy1231 66 KTPKGTRDYGPDSTVVRNQVLDKIVKIFKKHGAVTIDTPIFELKEVLTGK 115 (151)
Q Consensus 66 ~~pkGtrD~lP~e~~~~~~I~~~i~~~f~~~Gy~~IeTPv~E~~evf~~~ 115 (151)
.+-+|--=|+|....+.+.+.+-++.-|...||.+|.||.+=...+...+
T Consensus 179 ~lSPGS~FflP~G~~iyN~Lv~fir~ey~~rGf~EVitPniy~~~LWe~S 228 (560)
T KOG1637|consen 179 ELSPGSCFFLPHGTRIYNTLVDFIRAEYRKRGFTEVITPNIYNKKLWETS 228 (560)
T ss_pred cCCCcceeeccCcchHHHHHHHHHHHHHHhcCCceecCcchhhhhhhhhc
Confidence 56778888999999999999999999999999999999999888887653
No 93
>PRK02983 lysS lysyl-tRNA synthetase; Provisional
Probab=77.77 E-value=2.1 Score=42.45 Aligned_cols=29 Identities=21% Similarity=0.444 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHcCCccccCCccc
Q psy1231 79 TVVRNQVLDKIVKIFKKHGAVTIDTPIFE 107 (151)
Q Consensus 79 ~~~~~~I~~~i~~~f~~~Gy~~IeTPv~E 107 (151)
..+|..|...+++.|...||.+|+||++-
T Consensus 770 ~r~Rs~i~~~iR~fl~~~gFlEVeTPiL~ 798 (1094)
T PRK02983 770 LRARSAVVRAVRETLVARGFLEVETPILQ 798 (1094)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEeCCEee
Confidence 45778899999999999999999999995
No 94
>PLN02221 asparaginyl-tRNA synthetase
Probab=76.87 E-value=2.4 Score=39.20 Aligned_cols=33 Identities=24% Similarity=0.353 Sum_probs=28.3
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCccccCCccccH
Q psy1231 77 DSTVVRNQVLDKIVKIFKKHGAVTIDTPIFELK 109 (151)
Q Consensus 77 ~e~~~~~~I~~~i~~~f~~~Gy~~IeTPv~E~~ 109 (151)
.-+.+|..|...+++.|...||-+|.||+|--.
T Consensus 169 Ai~RiRS~i~~aiR~ff~~~gFiEI~TP~Lt~s 201 (572)
T PLN02221 169 AVARIRNALAFATHSFFQEHSFLYIHTPIITTS 201 (572)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEeCCeeccc
Confidence 345678899999999999999999999999544
No 95
>PTZ00401 aspartyl-tRNA synthetase; Provisional
Probab=76.79 E-value=2.5 Score=38.88 Aligned_cols=31 Identities=10% Similarity=0.072 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHHHHHHHHcCCccccCCcccc
Q psy1231 78 STVVRNQVLDKIVKIFKKHGAVTIDTPIFEL 108 (151)
Q Consensus 78 e~~~~~~I~~~i~~~f~~~Gy~~IeTPv~E~ 108 (151)
-..++..|...+++.|...||.+|+||++-.
T Consensus 212 i~r~rs~i~~~~R~fl~~~gFiEV~TP~L~~ 242 (550)
T PTZ00401 212 IFRLQSRVCQYFRQFLIDSDFCEIHSPKIIN 242 (550)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEeCCcccc
Confidence 3456788999999999999999999998843
No 96
>COG0173 AspS Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=76.73 E-value=2.2 Score=39.53 Aligned_cols=33 Identities=24% Similarity=0.430 Sum_probs=27.3
Q ss_pred ChhhHHHHHHHHHHHHHHHHHcCCccccCCccc
Q psy1231 75 GPDSTVVRNQVLDKIVKIFKKHGAVTIDTPIFE 107 (151)
Q Consensus 75 lP~e~~~~~~I~~~i~~~f~~~Gy~~IeTPv~E 107 (151)
+-....+|.+|...+++.+..+||.+|+||++.
T Consensus 137 m~~~l~lR~kv~~~iR~~ld~~gF~EiETPiLt 169 (585)
T COG0173 137 MQKNLKLRSKVTKAIRNFLDDQGFLEIETPILT 169 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCeEeecCccc
Confidence 334456678889999999999999999999873
No 97
>COG0016 PheS Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis]
Probab=75.69 E-value=7.8 Score=33.71 Aligned_cols=45 Identities=24% Similarity=0.299 Sum_probs=35.1
Q ss_pred cccccCCCccccCChhhHHHHHHHHHHHHHHHHHcCCccccCCcccc
Q psy1231 62 KFILKTPKGTRDYGPDSTVVRNQVLDKIVKIFKKHGAVTIDTPIFEL 108 (151)
Q Consensus 62 ~~~~~~pkGtrD~lP~e~~~~~~I~~~i~~~f~~~Gy~~IeTPv~E~ 108 (151)
.+.+..|.- .+.|........+.+.++++|...||.+++.|.+|.
T Consensus 95 ~~dv~lp~~--~~~~G~~Hpl~~~~e~i~~iF~~mGF~~~~gp~IE~ 139 (335)
T COG0016 95 KIDVTLPGR--RIYPGSLHPLTQTIEEIEDIFLGMGFTEVEGPEIET 139 (335)
T ss_pred CCCcCCCCc--cCCCCCcChHHHHHHHHHHHHHHcCceeccCCcccc
Confidence 444444432 666677778899999999999999999999998774
No 98
>PLN02903 aminoacyl-tRNA ligase
Probab=71.98 E-value=3.4 Score=38.87 Aligned_cols=31 Identities=32% Similarity=0.585 Sum_probs=26.9
Q ss_pred hhHHHHHHHHHHHHHHHHH-cCCccccCCccc
Q psy1231 77 DSTVVRNQVLDKIVKIFKK-HGAVTIDTPIFE 107 (151)
Q Consensus 77 ~e~~~~~~I~~~i~~~f~~-~Gy~~IeTPv~E 107 (151)
.-..+|..|...+++.|.. .||.+|+||++-
T Consensus 201 ~~lr~Rs~i~~~iR~fl~~~~gFiEVeTPiL~ 232 (652)
T PLN02903 201 ANLRLRHRVVKLIRRYLEDVHGFVEIETPILS 232 (652)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCeEEEECCeec
Confidence 3456788999999999996 999999999985
No 99
>PLN02320 seryl-tRNA synthetase
Probab=70.26 E-value=5.6 Score=36.37 Aligned_cols=50 Identities=18% Similarity=0.246 Sum_probs=41.6
Q ss_pred CCcccc-CChhhHHH-HHHHHHHHHHHHHHcCCccccCCccccHHhhhcccCC
Q psy1231 68 PKGTRD-YGPDSTVV-RNQVLDKIVKIFKKHGAVTIDTPIFELKEVLTGKYGV 118 (151)
Q Consensus 68 pkGtrD-~lP~e~~~-~~~I~~~i~~~f~~~Gy~~IeTPv~E~~evf~~~~Ge 118 (151)
..|.+- |+|.+.++ .+.+++-+.+....+||.+|.||.|=..+++.+. |.
T Consensus 220 vsG~~f~~L~g~~a~Le~ALi~f~ld~~~~~Gy~eV~tP~lv~~~l~~~s-G~ 271 (502)
T PLN02320 220 VSGSKFYYLKNEAVLLEMALVNWTLSEVMKKGFTPLTTPEIVRSSVVEKC-GF 271 (502)
T ss_pred cCCCeeEEeCCHHHHHHHHHHHHHHHHHHHcCCEEEECCccchHHHHHhc-CC
Confidence 458888 47887774 4789999999998999999999999999999754 54
No 100
>PLN02678 seryl-tRNA synthetase
Probab=68.86 E-value=6.8 Score=35.21 Aligned_cols=40 Identities=18% Similarity=0.365 Sum_probs=35.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHcCCccccCCccccHHhhhcc
Q psy1231 76 PDSTVVRNQVLDKIVKIFKKHGAVTIDTPIFELKEVLTGK 115 (151)
Q Consensus 76 P~e~~~~~~I~~~i~~~f~~~Gy~~IeTPv~E~~evf~~~ 115 (151)
+..+.+.+.|.+-+.+....+||.+|.||.|=..+++.+.
T Consensus 171 g~ga~L~~AL~~y~ld~~~~~Gy~~V~~P~lv~~~~~~~s 210 (448)
T PLN02678 171 GAGVLLNQALINFGLAFLRKRGYTPLQTPFFMRKDVMAKC 210 (448)
T ss_pred CHHHHHHHHHHHHHHHHHHHcCCEEEECcccccHHHHhhc
Confidence 3778899999999999999999999999999999998753
No 101
>TIGR00415 serS_MJ seryl-tRNA synthetase, Methanococcus jannaschii family. The seryl-tRNA synthetases from a few of the Archaea, represented by this model, are very different from the set of mutually more closely related seryl-tRNA synthetases from Eubacteria, Eukaryotes, and other Archaea. Although distantly homologous, the present set differs enough not to be recognized by the pfam model tRNA-synt_2b that recognizes the remainder of seryl-tRNA synthetases among oither class II amino-acyl tRNA synthetases.
Probab=68.53 E-value=6 Score=36.32 Aligned_cols=50 Identities=20% Similarity=0.234 Sum_probs=45.0
Q ss_pred cCCCccccCChhhHHHHHHHHHHHH-HHHHHcCCccccCCccccHHhhhcc
Q psy1231 66 KTPKGTRDYGPDSTVVRNQVLDKIV-KIFKKHGAVTIDTPIFELKEVLTGK 115 (151)
Q Consensus 66 ~~pkGtrD~lP~e~~~~~~I~~~i~-~~f~~~Gy~~IeTPv~E~~evf~~~ 115 (151)
-..+|+.=+.|..+.+++.|.+.+. ..++.+||++|.+|.|=+.+++.+.
T Consensus 210 ~~G~G~~vl~p~ga~L~rAL~~~~ld~~~~k~Gy~ev~fP~LIp~e~l~k~ 260 (520)
T TIGR00415 210 FPGRGQWFYGPKITALFRALEEFFIEEIVKKIGFQECLFPKLIPLDIMNKM 260 (520)
T ss_pred EcccCEEEEeCHHHHHHHHHHHHHHHHHHHhcCCeEEeCCcEecHHHHccc
Confidence 4578999999999999999999995 6888999999999999999999765
No 102
>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].
Probab=66.64 E-value=39 Score=25.94 Aligned_cols=60 Identities=23% Similarity=0.435 Sum_probs=43.4
Q ss_pred HHHhhhcCCCChhhHHHHHHHHHHHHHhhchhhhcccccccCcccccCCCccccCChhhHHHHHHHHHHHHHHHHHcCCc
Q psy1231 20 VVRKLKSSKAPKEQIDEEVKKLLELKNQLKINDEANEDNSTHKFILKTPKGTRDYGPDSTVVRNQVLDKIVKIFKKHGAV 99 (151)
Q Consensus 20 ~VR~LK~~ka~k~~I~~~V~kLl~LK~ql~~~~~~~~~~~~~~~~~~~pkGtrD~lP~e~~~~~~I~~~i~~~f~~~Gy~ 99 (151)
.+...+...|+...++++.+.|.++++++.. . ..++.+.+...+...|-.
T Consensus 45 ~~~~Ik~~ea~~e~~k~E~krL~~rkk~~e~-~-----------------------------~~~Lk~yL~~~m~~~g~~ 94 (162)
T PF05565_consen 45 IAKVIKNLEADIEAIKAEIKRLQERKKSIEN-R-----------------------------IDRLKEYLLDAMEAAGIK 94 (162)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-H-----------------------------HHHHHHHHHHHHHHcCCc
Confidence 3444454557788889999999988887754 2 345555667777777999
Q ss_pred cccCCccccH
Q psy1231 100 TIDTPIFELK 109 (151)
Q Consensus 100 ~IeTPv~E~~ 109 (151)
.|+||.|-..
T Consensus 95 ki~t~~~tis 104 (162)
T PF05565_consen 95 KIKTPLFTIS 104 (162)
T ss_pred eeecCceEEE
Confidence 9999988654
No 103
>KOG0554|consensus
Probab=64.59 E-value=6.1 Score=35.39 Aligned_cols=39 Identities=21% Similarity=0.215 Sum_probs=34.9
Q ss_pred cCChhhHHHHHHHHHHHHHHHHHcCCccccCCccccHHh
Q psy1231 73 DYGPDSTVVRNQVLDKIVKIFKKHGAVTIDTPIFELKEV 111 (151)
Q Consensus 73 D~lP~e~~~~~~I~~~i~~~f~~~Gy~~IeTPv~E~~ev 111 (151)
+.+.+-+++|..+....+..|..+||..|.||++.-.|.
T Consensus 126 ~~~~av~RvRs~~~~a~h~ffq~~~F~~i~tPiiTt~DC 164 (446)
T KOG0554|consen 126 AKVGAVLRVRSALAFATHSFFQSHDFTYINTPIITTNDC 164 (446)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHcCceEecCcEeeccCC
Confidence 556788899999999999999999999999999987753
No 104
>COG0017 AsnS Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=63.62 E-value=7.1 Score=35.13 Aligned_cols=34 Identities=24% Similarity=0.423 Sum_probs=29.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHcCCccccCCccccH
Q psy1231 76 PDSTVVRNQVLDKIVKIFKKHGAVTIDTPIFELK 109 (151)
Q Consensus 76 P~e~~~~~~I~~~i~~~f~~~Gy~~IeTPv~E~~ 109 (151)
-.-+.++..|...+++.|...||.+|.||++--.
T Consensus 131 ~Av~kirs~i~~a~~eff~~~gF~eV~tP~i~~~ 164 (435)
T COG0017 131 QAVFKIRSSILRAIREFFYENGFTEVHTPIITAS 164 (435)
T ss_pred HHHHhHHHHHHHHHHHHHHhCCcEEecCceEecc
Confidence 3456778999999999999999999999998554
No 105
>KOG2324|consensus
Probab=61.63 E-value=13 Score=33.13 Aligned_cols=74 Identities=23% Similarity=0.251 Sum_probs=59.4
Q ss_pred ccccCCCccccCChhhHHHHHHHHHHHHHHHHHcCCccccCCccccHHhhhccc-----CCc---cccc-----------
Q psy1231 63 FILKTPKGTRDYGPDSTVVRNQVLDKIVKIFKKHGAVTIDTPIFELKEVLTGKY-----GVY---WTGY----------- 123 (151)
Q Consensus 63 ~~~~~pkGtrD~lP~e~~~~~~I~~~i~~~f~~~Gy~~IeTPv~E~~evf~~~~-----Ge~---~~~~----------- 123 (151)
|....-.|++-++|-..+..+++.+.+..-+..-|...|..|++-..++..... |.+ ..|+
T Consensus 36 fI~ps~~G~yq~LPlg~R~~~K~~~~l~~~mqs~Ga~kIslp~ls~~~LWekTgRw~~~gsEl~rl~Dr~gkq~cL~pTh 115 (457)
T KOG2324|consen 36 FIRPSSPGLYQLLPLGLRVLNKLCRLLDNEMQSGGAQKISLPILSSKELWEKTGRWDAMGSELFRLHDRKGKQMCLTPTH 115 (457)
T ss_pred ccccCCCCceeeccchHHHHHHHHHHHHHHHHhccCeeEeecccChHHHHHhcCcccccchhheEeeccCCCEeccCCch
Confidence 445667899999999999999999999999999999999999999999986542 222 1222
Q ss_pred chhhhhhHHhhCC
Q psy1231 124 STAVGFLMIHSVP 136 (151)
Q Consensus 124 ~~~~~~~~~~~~~ 136 (151)
+.+||.+|--..|
T Consensus 116 EE~iT~lmat~~~ 128 (457)
T KOG2324|consen 116 EEDITALMATYIP 128 (457)
T ss_pred HHHHHHHHHhcCc
Confidence 6788888765555
No 106
>cd00496 PheRS_alpha_core Phenylalanyl-tRNA synthetase (PheRS) alpha chain catalytic core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer.
Probab=55.68 E-value=11 Score=29.97 Aligned_cols=28 Identities=29% Similarity=0.484 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHcCCccccCCccccH
Q psy1231 82 RNQVLDKIVKIFKKHGAVTIDTPIFELK 109 (151)
Q Consensus 82 ~~~I~~~i~~~f~~~Gy~~IeTPv~E~~ 109 (151)
.+.+.+.+++.+..+||.++.|++|...
T Consensus 3 ~~~~~~~ir~~L~~~Gf~Ev~tys~~~~ 30 (218)
T cd00496 3 LNKVIEEIEDIFVSMGFTEVEGPEVETD 30 (218)
T ss_pred HHHHHHHHHHHHHHCCCEEEeCCccccc
Confidence 3567888999999999999999999766
No 107
>KOG2411|consensus
Probab=51.04 E-value=14 Score=34.17 Aligned_cols=36 Identities=28% Similarity=0.505 Sum_probs=27.8
Q ss_pred hHHHHHHHHHHHHHHHHH-cCCccccCCccccHHhhhcccCC
Q psy1231 78 STVVRNQVLDKIVKIFKK-HGAVTIDTPIFELKEVLTGKYGV 118 (151)
Q Consensus 78 e~~~~~~I~~~i~~~f~~-~Gy~~IeTPv~E~~evf~~~~Ge 118 (151)
...+|..+...+++.|.. +||.+|+||++ |.+.=|.
T Consensus 177 nLrlRS~~v~~iR~yl~n~~GFvevETPtL-----FkrTPgG 213 (628)
T KOG2411|consen 177 NLRLRSNVVKKIRRYLNNRHGFVEVETPTL-----FKRTPGG 213 (628)
T ss_pred HHHHHHHHHHHHHHHHhhhcCeeeccCcch-----hccCCCc
Confidence 346778888899998874 99999999985 5555444
No 108
>PF01409 tRNA-synt_2d: tRNA synthetases class II core domain (F); InterPro: IPR002319 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Phenylalanyl-tRNA synthetase (6.1.1.20 from EC) is an alpha2/beta2 tetramer composed of 2 subunits that belongs to class IIc. In eubacteria, a small subunit (pheS gene) can be designated as beta (E. coli) or alpha subunit (nomenclature adopted in InterPro). Reciprocally the large subunit (pheT gene) can be designated as alpha (E. coli) or beta (see IPR004531 from INTERPRO and IPR004532 from INTERPRO). In all other kingdoms the two subunits have equivalent length in eukaryota, and can be identified by specific signatures. The enzyme from Thermus thermophilus has an alpha 2 beta 2 type quaternary structure and is one of the most complicated members of the synthetase family. Identification of phenylalanyl-tRNA synthetase as a member of class II aaRSs was based only on sequence alignment of the small alpha-subunit with other synthetases [].; GO: 0000049 tRNA binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 3TUP_A 3HFV_A 3CMQ_A 3TEG_A 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B ....
Probab=46.76 E-value=17 Score=29.94 Aligned_cols=29 Identities=21% Similarity=0.265 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHcCCccccCCcccc
Q psy1231 80 VVRNQVLDKIVKIFKKHGAVTIDTPIFEL 108 (151)
Q Consensus 80 ~~~~~I~~~i~~~f~~~Gy~~IeTPv~E~ 108 (151)
.-.+.+.+.++++|...||.++++|.+|.
T Consensus 17 hp~~~~~~~i~~~~~~~Gf~e~~~~~v~s 45 (247)
T PF01409_consen 17 HPITKFIREIRDIFVGMGFQEVEGPEVES 45 (247)
T ss_dssp SHHHHHHHHHHHHHHCTTSEEESTTSEEE
T ss_pred CHHHHHHHHHHHHHHHCCCeEeeCCeEEe
Confidence 34678899999999999999999999965
No 109
>PF02556 SecB: Preprotein translocase subunit SecB; InterPro: IPR003708 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone protein (SecB), an ATPase (SecA), an integral membrane complex (SecCY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. The chaperone protein SecB [] is a highly acidic homotetrameric protein that exists as a "dimer of dimers" in the bacterial cytoplasm. SecB maintains preproteins in an unfolded state after translation, and targets these to the peripheral membrane protein ATPase SecA for secretion []. Recently, the tertiary structure of Haemophilus influenzae SecB (P44853 from SWISSPROT) was resolved by means of X-ray crystallography to 2.5A []. The chaperone comprises four chains, forming a tetramer, each chain of which has a simple alpha+beta fold arrangement. While one binding site on the homotetramer recognises unfolded polypeptides by hydrophobic interactions, the second binds to SecA through the latter's C-terminal 22 residues.; GO: 0051082 unfolded protein binding, 0015031 protein transport, 0051262 protein tetramerization; PDB: 1OZB_F 1FX3_A 1QYN_A.
Probab=43.40 E-value=32 Score=25.64 Aligned_cols=37 Identities=11% Similarity=0.178 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHcCCccccCCccccHHhhhccc
Q psy1231 80 VVRNQVLDKIVKIFKKHGAVTIDTPIFELKEVLTGKY 116 (151)
Q Consensus 80 ~~~~~I~~~i~~~f~~~Gy~~IeTPv~E~~evf~~~~ 116 (151)
.++-+++..+..+..+-||-++..|.+.+.+++....
T Consensus 108 iL~Py~R~~Is~lt~~~gfppl~LP~INf~~l~~~~~ 144 (149)
T PF02556_consen 108 ILFPYLREIISSLTARAGFPPLILPPINFSELYEQQL 144 (149)
T ss_dssp HHHHHHHHHHHHHHHHTT-S--------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCeecCccCHHHHHHHHH
Confidence 4678999999999999999999999999999997653
No 110
>KOG3910|consensus
Probab=38.33 E-value=64 Score=29.96 Aligned_cols=62 Identities=29% Similarity=0.470 Sum_probs=41.9
Q ss_pred HHHHHHHHhhHHHHh-hhcCCC-ChhhH-HHHHHHHHHHHHhhchhhhcccccccCcccccCCCccccCChhhHHHHHHH
Q psy1231 9 DIQESIKAQGDVVRK-LKSSKA-PKEQI-DEEVKKLLELKNQLKINDEANEDNSTHKFILKTPKGTRDYGPDSTVVRNQV 85 (151)
Q Consensus 9 ~l~~~i~~qg~~VR~-LK~~ka-~k~~I-~~~V~kLl~LK~ql~~~~~~~~~~~~~~~~~~~pkGtrD~lP~e~~~~~~I 85 (151)
.|.+.+++.|..... ||++|. +|--| ..+|+.++.|..|.-. |.+.|+.+.++++=
T Consensus 540 DINeAfKELGRMCqlHlkSeKpQTKLgILhqAVsVIlsLEQQVRE---------------------RNLNPKaaclkRRe 598 (632)
T KOG3910|consen 540 DINEAFKELGRMCQLHLKSEKPQTKLGILHQAVSVILSLEQQVRE---------------------RNLNPKAACLKRRE 598 (632)
T ss_pred hHHHHHHHHHHHHHHhhcccCcchhhhHHHHHHHHHHHHHHHHHH---------------------ccCChhhhhhhccc
Confidence 456777888877765 787763 55555 5789999999888754 55666666666555
Q ss_pred HHHHHH
Q psy1231 86 LDKIVK 91 (151)
Q Consensus 86 ~~~i~~ 91 (151)
++.+..
T Consensus 599 eEkvs~ 604 (632)
T KOG3910|consen 599 EEKVSM 604 (632)
T ss_pred hhhhcc
Confidence 554443
No 111
>PF08984 DUF1858: Domain of unknown function (DUF1858); InterPro: IPR015077 This protein has no known function. It is found in various hypothetical bacterial proteins. ; PDB: 2K53_A 2K5E_A 2FI0_A.
Probab=31.79 E-value=31 Score=21.91 Aligned_cols=17 Identities=18% Similarity=0.495 Sum_probs=15.2
Q ss_pred HHHHHHHcCCccccCCc
Q psy1231 89 IVKIFKKHGAVTIDTPI 105 (151)
Q Consensus 89 i~~~f~~~Gy~~IeTPv 105 (151)
+.++|..+||..+.+|+
T Consensus 17 ~~~il~~~gf~~l~~p~ 33 (59)
T PF08984_consen 17 LIEILVSYGFHCLGNPV 33 (59)
T ss_dssp GHHHHHHTTGGGGGSCC
T ss_pred HHHHHHHcCCcccCCcH
Confidence 46889999999999997
No 112
>PLN02221 asparaginyl-tRNA synthetase
Probab=28.42 E-value=60 Score=30.21 Aligned_cols=43 Identities=35% Similarity=0.465 Sum_probs=35.9
Q ss_pred chHHHHHHHHHhhHHHHhhhcCCCChhhHHHHHHHHHHHHHhh
Q psy1231 6 PMADIQESIKAQGDVVRKLKSSKAPKEQIDEEVKKLLELKNQL 48 (151)
Q Consensus 6 ~~~~l~~~i~~qg~~VR~LK~~ka~k~~I~~~V~kLl~LK~ql 48 (151)
+.++....|++.|+.|-.||.+++.++.+.++++.|..-+...
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (572)
T PLN02221 236 DVEAARLIVKERGEVVAQLKAAKASKEEITAAVAELKIAKESL 278 (572)
T ss_pred hhhhhhhhhhhhcchhhhhhccccchhhhhhhhhhhhhhhhhh
Confidence 5677788999999999999999999999999888876544443
No 113
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=28.37 E-value=80 Score=28.46 Aligned_cols=45 Identities=16% Similarity=0.235 Sum_probs=36.8
Q ss_pred ccccCChhhHHHHHHHHHHHHHHHHHcCCccccCCccccHHhhhc
Q psy1231 70 GTRDYGPDSTVVRNQVLDKIVKIFKKHGAVTIDTPIFELKEVLTG 114 (151)
Q Consensus 70 GtrD~lP~e~~~~~~I~~~i~~~f~~~Gy~~IeTPv~E~~evf~~ 114 (151)
|++=+.+.-+.+.+.+.+-+.+.-..+||.++.+|.+=..+++.+
T Consensus 165 rf~~~~~~~a~L~rAL~~f~ld~~~~~Gf~e~~~P~lv~~e~m~g 209 (429)
T COG0172 165 RFYFYKGKGARLERALIQFMLDLHTKHGFTEVLPPYLVNLESMFG 209 (429)
T ss_pred ceEEEcCHHHHHHHHHHHHHHHHHHHcCceEeeCceeecHHHhhc
Confidence 444555667778888888888888899999999999999998855
No 114
>PF10469 AKAP7_NLS: AKAP7 2'5' RNA ligase-like domain; InterPro: IPR019510 This entry represents the N-terminal nuclear localisation signal-containing domain found in the cyclic AMP-dependent protein kinase A (PKA) anchor protein, AKAP7. This protein anchors PKA for its role in regulating PKA-mediated gene transcription in both somatic cells and oocytes []. This domain carries the nuclear localisation signal (NLS) KKRKK, that indicates the cellular destiny of this anchor protein []. Binding to the regulatory subunits RI and RII of PKA is mediated via the RI-RII subunit-binding domain at the C terminus.
Probab=28.01 E-value=2.5e+02 Score=21.78 Aligned_cols=73 Identities=19% Similarity=0.219 Sum_probs=45.2
Q ss_pred ChhhHHHHHHHHHHHHHhhchhhhcccccccCcccccCCCcccc---------CChhh---HHHHHHHHHHHHHHHHHcC
Q psy1231 30 PKEQIDEEVKKLLELKNQLKINDEANEDNSTHKFILKTPKGTRD---------YGPDS---TVVRNQVLDKIVKIFKKHG 97 (151)
Q Consensus 30 ~k~~I~~~V~kLl~LK~ql~~~~~~~~~~~~~~~~~~~pkGtrD---------~lP~e---~~~~~~I~~~i~~~f~~~G 97 (151)
+.+++..+++.|.+++..+.. .. .....-.+.++...=|.| .-+.+ ....+.+.+.+++.|...|
T Consensus 54 ~~~~i~~a~~~L~~~~~~i~~-~~--~~~~~~~i~l~Gl~~f~~d~~~~~VLya~v~~~~~~~~L~~l~~~l~~~f~~~G 130 (209)
T PF10469_consen 54 TDEEIEKAKEALKSLKQEIKD-QL--QNPPPLKITLKGLGYFNDDPSKARVLYAKVSEDSNSERLQELANKLRERFQEAG 130 (209)
T ss_pred CHHHHHHHHHHHHHHHHHHhh-hc--cCCCCceEEeeechhhCCCCCcceEEEEcccccchHHHHHHHHHHHHHHHHHcC
Confidence 455888888888888877654 10 001122223333333333 11222 5778899999999999999
Q ss_pred CccccCCc
Q psy1231 98 AVTIDTPI 105 (151)
Q Consensus 98 y~~IeTPv 105 (151)
+...+.+-
T Consensus 131 l~~~~~~~ 138 (209)
T PF10469_consen 131 LLVTDDRR 138 (209)
T ss_pred CccccccC
Confidence 99966643
No 115
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=27.17 E-value=87 Score=27.56 Aligned_cols=43 Identities=14% Similarity=0.228 Sum_probs=34.1
Q ss_pred CCccccCChhhHHHHHHHHHHHHHHHHHcCCccccCCccccHHhh
Q psy1231 68 PKGTRDYGPDSTVVRNQVLDKIVKIFKKHGAVTIDTPIFELKEVL 112 (151)
Q Consensus 68 pkGtrD~lP~e~~~~~~I~~~i~~~f~~~Gy~~IeTPv~E~~evf 112 (151)
..|+|++ .+...++.+.+.+++.+.++||..|.-|.-.+.+-+
T Consensus 341 ~DGlR~~--~D~e~R~~f~~~l~~~l~~~g~~~v~l~~g~~~eR~ 383 (399)
T PRK08099 341 ADGLRSL--GSSVDRKRFQNLLKEMLKENNIEYVHVESPDYDKRY 383 (399)
T ss_pred cCCcccC--CCHHHHHHHHHHHHHHHHHcCCCEEEECCCCHHHHH
Confidence 5688987 567788888999999999999999988754444444
No 116
>PRK11552 putative DNA-binding transcriptional regulator; Provisional
Probab=26.94 E-value=63 Score=25.52 Aligned_cols=24 Identities=17% Similarity=0.241 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHcCCccccC
Q psy1231 79 TVVRNQVLDKIVKIFKKHGAVTIDT 103 (151)
Q Consensus 79 ~~~~~~I~~~i~~~f~~~Gy~~IeT 103 (151)
...++.|.+...++|..+||. +.+
T Consensus 12 ~~~r~~Il~aA~~lF~~~Gy~-~s~ 35 (225)
T PRK11552 12 EQAKQQLIAAALAQFGEYGLH-ATT 35 (225)
T ss_pred HHHHHHHHHHHHHHHHHhCcc-CCH
Confidence 578999999999999999998 643
No 117
>cd00769 PheRS_beta_core Phenylalanyl-tRNA synthetase (PheRS) beta chain core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer. While the alpha chain contains a catalytic core domain, the beta chain has a non-catalytic core domain.
Probab=25.80 E-value=63 Score=25.03 Aligned_cols=30 Identities=13% Similarity=0.094 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHcCCccccCCccccHHhh
Q psy1231 83 NQVLDKIVKIFKKHGAVTIDTPIFELKEVL 112 (151)
Q Consensus 83 ~~I~~~i~~~f~~~Gy~~IeTPv~E~~evf 112 (151)
+.+.+.+++.+...||.+|.|..|-..+.+
T Consensus 3 ~~~~~~ir~~L~~~G~~E~~tys~~~~~~~ 32 (198)
T cd00769 3 QKLERKLRRLLAGLGFQEVITYSLTSPEEA 32 (198)
T ss_pred hHHHHHHHHHHHHCCCceeecccCCCHHHH
Confidence 456778899999999999999999766443
No 118
>PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional
Probab=25.43 E-value=70 Score=29.33 Aligned_cols=36 Identities=17% Similarity=0.136 Sum_probs=30.0
Q ss_pred ccCChhhHHHHHHHHHHHHHHHHHcCCccccCC-ccc
Q psy1231 72 RDYGPDSTVVRNQVLDKIVKIFKKHGAVTIDTP-IFE 107 (151)
Q Consensus 72 rD~lP~e~~~~~~I~~~i~~~f~~~Gy~~IeTP-v~E 107 (151)
+...+....-...+++.++++|..-||.++++| .+|
T Consensus 221 ~~~~~g~~HPl~~~~~~i~~if~~mGF~e~~~~~~ve 257 (494)
T PTZ00326 221 KKIGGGNLHPLLKVRREFREILLEMGFEEMPTNRYVE 257 (494)
T ss_pred CCCCCCCCChHHHHHHHHHHHHHhCCCEEecCCCCcc
Confidence 666667777789999999999999999999876 444
No 119
>COG4904 Uncharacterized protein conserved in archaea [Function unknown]
Probab=25.22 E-value=1e+02 Score=24.15 Aligned_cols=21 Identities=10% Similarity=0.151 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHcCCccccCC
Q psy1231 84 QVLDKIVKIFKKHGAVTIDTP 104 (151)
Q Consensus 84 ~I~~~i~~~f~~~Gy~~IeTP 104 (151)
-.+.++...|++|||+-=+.|
T Consensus 67 v~~k~~~~FYEnyGf~A~elp 87 (174)
T COG4904 67 VWRKTVEAFYENYGFSAGELP 87 (174)
T ss_pred HHHHHHHHHHHHcCCCcCCCC
Confidence 344556688999999998888
No 120
>KOG2509|consensus
Probab=23.97 E-value=1e+02 Score=27.96 Aligned_cols=47 Identities=19% Similarity=0.333 Sum_probs=38.2
Q ss_pred CCccccCC--hhhHHHHHHHHHHHHHHHHHcCCccccCCccccHHhhhc
Q psy1231 68 PKGTRDYG--PDSTVVRNQVLDKIVKIFKKHGAVTIDTPIFELKEVLTG 114 (151)
Q Consensus 68 pkGtrD~l--P~e~~~~~~I~~~i~~~f~~~Gy~~IeTPv~E~~evf~~ 114 (151)
+.|-|-|+ +....+.+.+++-..+.....||.+|.||.|=..||+..
T Consensus 172 vsG~r~Yyl~g~~a~LeqALi~yal~~l~~kGy~pl~~P~i~rkeVm~~ 220 (455)
T KOG2509|consen 172 VSGHRGYYLKGAGAFLEQALINYALDFLNAKGYTPLTTPDILRKEVMQK 220 (455)
T ss_pred cccccceEEcCHHHHHHHHHHHHHHHHHHHcCCccccCchhhhHHHHHH
Confidence 45655554 455667788889899999999999999999999999864
No 121
>TIGR03384 betaine_BetI transcriptional repressor BetI. BetI is a DNA-binding transcriptional repressor of the bet (betaine) regulon. In sequence, it is related to TetR (pfam00440). Choline, through BetI, induces the expression of the betaine biosynthesis genes betA and betB by derepression. The choline porter gene betT is also part of this regulon in Escherichia coli. Note that a different transcriptional regulator, ArcA, controls the expression of bet regulon genes in response to oxygen, as BetA is an oxygen-dependent enzyme.
Probab=21.93 E-value=1e+02 Score=22.73 Aligned_cols=25 Identities=12% Similarity=0.425 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHcCCccccC
Q psy1231 79 TVVRNQVLDKIVKIFKKHGAVTIDT 103 (151)
Q Consensus 79 ~~~~~~I~~~i~~~f~~~Gy~~IeT 103 (151)
...++.|.+...++|..+||..+..
T Consensus 7 ~~rr~~Il~aA~~lf~~~G~~~~s~ 31 (189)
T TIGR03384 7 PIRRAELIDATIESIGERGSLDVTI 31 (189)
T ss_pred hHHHHHHHHHHHHHHHhcCcccCCH
Confidence 3678999999999999999997664
No 122
>PF08134 cIII: cIII protein family; InterPro: IPR012995 This family consists of the CIII family of regulatory proteins. The lambda CIII protein has 54 amino acids and it forms an amphipathic helix within its amino acid sequence. Lambda CIII stabilises the lambda CII protein and the host sigma factor 32, responsible for transcribing genes of the heat shock regulon [].
Probab=21.27 E-value=1.3e+02 Score=18.36 Aligned_cols=24 Identities=17% Similarity=0.187 Sum_probs=19.5
Q ss_pred cccCChhhHHHHHHHHHHHHHHHH
Q psy1231 71 TRDYGPDSTVVRNQVLDKIVKIFK 94 (151)
Q Consensus 71 trD~lP~e~~~~~~I~~~i~~~f~ 94 (151)
+.-|+|.|.++-++|++.|+..-+
T Consensus 12 mSAyYP~ESELskr~rrLIRaa~k 35 (44)
T PF08134_consen 12 MSAYYPTESELSKRIRRLIRAARK 35 (44)
T ss_pred eeeecCcHHHHHHHHHHHHHHHHH
Confidence 467899999999999888876544
No 123
>PF12469 DUF3692: CRISPR-associated protein ; InterPro: IPR024615 This uncharacterised N-terminal domain family is typically between 101 and 138 amino acids in length. ; PDB: 3UNG_C 4DOZ_A 3UR3_C.
Probab=20.81 E-value=40 Score=24.39 Aligned_cols=54 Identities=15% Similarity=0.105 Sum_probs=35.6
Q ss_pred ccCCCccccCChhhHHHHHHHHHHHHHHHHHcCCccccCCccccHHhhhcccCC
Q psy1231 65 LKTPKGTRDYGPDSTVVRNQVLDKIVKIFKKHGAVTIDTPIFELKEVLTGKYGV 118 (151)
Q Consensus 65 ~~~pkGtrD~lP~e~~~~~~I~~~i~~~f~~~Gy~~IeTPv~E~~evf~~~~Ge 118 (151)
+..-|-|||+.-....+-.-+...+..+.++||-..|-.|.+..-..+..-..+
T Consensus 14 Ia~aRktrDLWagS~lLS~L~~~~~~~l~~~~g~~~ii~P~~~~np~~~~~l~~ 67 (117)
T PF12469_consen 14 IAQARKTRDLWAGSYLLSYLAWAAIEELVERYGPDEIIFPSLRGNPFYDAWLLE 67 (117)
T ss_dssp HHS-SSHHHHHHHHHHHHHHHHHHHHHHHHHT-GGGEEES--TT-HHHHHTT--
T ss_pred HHHcCchhHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEeCCCCCCchHHHHHHH
Confidence 344677899888877777777777788888999999999988765544443333
Done!