Query psy1231
Match_columns 151
No_of_seqs 244 out of 1229
Neff 5.9
Searched_HMMs 29240
Date Fri Aug 16 15:47:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1231.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1231hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g85_A Histidine-tRNA ligase, 99.9 3.7E-25 1.3E-29 194.5 3.1 137 3-145 11-154 (517)
2 4g84_A Histidine--tRNA ligase, 99.6 1.6E-16 5.5E-21 136.6 3.1 86 60-145 9-101 (464)
3 3net_A Histidyl-tRNA synthetas 99.5 2.2E-15 7.7E-20 131.2 3.9 87 60-147 7-116 (465)
4 3lc0_A Histidyl-tRNA synthetas 99.5 6.4E-15 2.2E-19 128.5 2.5 87 60-146 23-118 (456)
5 3od1_A ATP phosphoribosyltrans 99.4 4.9E-14 1.7E-18 121.1 3.1 82 62-144 7-96 (400)
6 2zt5_A Glycyl-tRNA synthetase; 99.4 9.1E-14 3.1E-18 126.9 3.8 110 6-115 9-138 (693)
7 1wu7_A Histidyl-tRNA synthetas 99.4 7.9E-14 2.7E-18 119.7 2.9 83 62-144 3-93 (434)
8 1z7m_A ATP phosphoribosyltrans 99.4 8.8E-14 3E-18 117.3 2.9 85 60-144 17-112 (344)
9 1h4v_B Histidyl-tRNA synthetas 99.4 1.3E-13 4.4E-18 117.5 3.9 83 63-145 1-94 (421)
10 1htt_A Histidyl-tRNA synthetas 99.4 8.5E-14 2.9E-18 118.7 1.4 83 63-145 2-95 (423)
11 3rac_A Histidine-tRNA ligase; 99.4 2.1E-13 7.2E-18 116.2 3.2 80 64-144 22-110 (373)
12 4e51_A Histidine--tRNA ligase; 99.3 3.5E-13 1.2E-17 117.6 3.2 88 58-145 25-124 (467)
13 1x59_A Histidyl-tRNA synthetas 99.3 6.8E-12 2.3E-16 84.8 6.7 67 2-74 6-72 (73)
14 1qe0_A Histidyl-tRNA synthetas 99.2 5E-12 1.7E-16 107.5 2.5 82 64-145 1-93 (420)
15 2i4l_A Proline-tRNA ligase; al 98.8 4.9E-10 1.7E-14 97.2 0.9 86 63-149 51-149 (458)
16 3a32_A Probable threonyl-tRNA 98.8 1.1E-09 3.9E-14 95.3 2.3 78 67-144 37-122 (471)
17 1d2d_A TRNA synthetase, tRNA l 98.8 4.6E-09 1.6E-13 68.3 3.7 41 10-50 2-42 (59)
18 1fyj_A Multifunctional aminoac 98.8 1.1E-08 3.9E-13 65.8 5.5 44 7-50 2-45 (57)
19 1nj8_A Proline-tRNA synthetase 98.8 2.4E-09 8.4E-14 93.2 3.0 80 66-145 25-118 (459)
20 1evl_A Threonyl-tRNA synthetas 98.7 1.1E-08 3.9E-13 86.8 4.7 78 66-144 17-103 (401)
21 1hc7_A Prolyl-tRNA synthetase; 98.7 7.5E-09 2.6E-13 90.6 3.6 80 65-144 30-123 (477)
22 2djv_A Methionyl-tRNA syntheta 98.7 2.3E-08 7.9E-13 68.5 4.5 45 6-50 14-58 (79)
23 2j3l_A Prolyl-tRNA synthetase; 98.5 3.5E-08 1.2E-12 87.3 3.2 78 66-144 34-121 (572)
24 1nyr_A Threonyl-tRNA synthetas 98.5 7.4E-08 2.5E-12 86.7 5.1 110 28-144 222-346 (645)
25 1qf6_A THRRS, threonyl-tRNA sy 98.3 4.2E-07 1.4E-11 82.1 4.5 52 66-118 258-309 (642)
26 1nj1_A PROR, proline-tRNA synt 98.3 1.5E-07 5E-12 82.9 1.3 80 66-146 58-151 (501)
27 1ati_A Glycyl-tRNA synthetase; 98.2 6.4E-07 2.2E-11 78.9 2.9 52 64-115 24-77 (505)
28 4hvc_A Bifunctional glutamate/ 98.1 1.6E-06 5.6E-11 76.9 5.0 54 65-118 47-100 (519)
29 3ial_A Prolyl-tRNA synthetase; 98.1 1.5E-06 5E-11 77.2 4.2 52 66-117 42-93 (518)
30 3uh0_A Threonyl-tRNA synthetas 98.1 1.6E-06 5.6E-11 75.5 4.5 51 67-118 52-103 (460)
31 1r6t_A Tryptophanyl-tRNA synth 98.1 6.9E-07 2.4E-11 78.6 1.1 47 4-50 6-52 (477)
32 2dq3_A Seryl-tRNA synthetase; 98.0 1.8E-06 6.3E-11 74.6 1.8 74 69-144 162-243 (425)
33 1ses_A Seryl-tRNA synthetase; 97.6 3.2E-05 1.1E-09 66.8 4.0 49 69-118 156-204 (421)
34 2dq0_A Seryl-tRNA synthetase; 97.5 5.8E-05 2E-09 65.8 4.2 49 69-118 183-231 (455)
35 2cja_A Seryl-tRNA synthetase; 97.3 0.00011 3.8E-09 65.2 3.5 49 67-115 219-268 (522)
36 1usy_A ATP phosphoribosyltrans 97.2 5.2E-05 1.8E-09 61.6 0.5 53 83-138 4-59 (275)
37 1nnh_A Asparaginyl-tRNA synthe 97.1 0.00037 1.3E-08 57.3 3.9 45 75-119 11-57 (294)
38 3qne_A Seryl-tRNA synthetase, 94.8 0.14 5E-06 45.0 9.3 46 70-115 176-221 (485)
39 3dsq_A Pyrrolysyl-tRNA synthet 94.6 0.023 7.9E-07 46.4 3.5 34 82-115 73-106 (288)
40 1g5h_A Mitochondrial DNA polym 94.6 0.011 3.9E-07 51.3 1.6 49 66-114 48-99 (454)
41 1n9w_A Aspartyl-tRNA synthetas 93.9 0.036 1.2E-06 47.7 3.5 34 76-109 122-155 (422)
42 3vbb_A Seryl-tRNA synthetase, 93.9 0.036 1.2E-06 49.2 3.5 47 69-115 191-237 (522)
43 1wle_A Seryl-tRNA synthetase; 93.7 0.041 1.4E-06 48.5 3.5 47 69-115 209-255 (501)
44 1x54_A Asparaginyl-tRNA synthe 93.6 0.049 1.7E-06 47.0 3.7 33 77-109 133-165 (434)
45 1wyd_A Hypothetical aspartyl-t 93.5 0.048 1.6E-06 47.0 3.5 33 77-109 132-164 (429)
46 3qtc_A Pyrrolysyl-tRNA synthet 93.4 0.047 1.6E-06 44.2 3.2 33 82-114 79-111 (290)
47 1eov_A ASPRS, aspartyl-tRNA sy 93.3 0.054 1.8E-06 47.4 3.5 34 77-110 176-209 (487)
48 3a74_A Lysyl-tRNA synthetase; 92.4 0.082 2.8E-06 46.4 3.5 33 77-109 172-204 (493)
49 3ikl_A DNA polymerase subunit 92.4 0.087 3E-06 46.0 3.6 43 66-108 90-135 (459)
50 3a5y_A GENX, putative lysyl-tR 91.7 0.12 4.1E-06 43.3 3.5 35 75-109 32-66 (345)
51 3err_A Fusion protein of micro 91.1 0.16 5.5E-06 45.1 3.8 49 69-118 265-313 (536)
52 1e1o_A Lysyl-tRNA synthetase, 90.4 0.17 5.7E-06 44.6 3.3 32 78-109 182-213 (504)
53 2xgt_A Asparaginyl-tRNA synthe 89.9 0.22 7.4E-06 42.9 3.5 35 76-110 129-163 (435)
54 3lss_A Seryl-tRNA synthetase; 89.6 0.22 7.5E-06 43.8 3.4 47 69-115 198-244 (484)
55 3nem_A Aspartyl-tRNA synthetas 88.1 0.34 1.2E-05 41.9 3.5 33 78-110 136-168 (438)
56 3m4p_A Ehasnrs, asparaginyl-tR 87.8 0.36 1.2E-05 41.9 3.5 33 78-110 155-187 (456)
57 1c0a_A Aspartyl tRNA synthetas 86.7 0.46 1.6E-05 42.4 3.7 30 79-108 138-167 (585)
58 1l0w_A Aspartyl-tRNA synthetas 86.4 0.49 1.7E-05 42.3 3.7 30 79-108 144-173 (580)
59 3bju_A Lysyl-tRNA synthetase; 86.1 0.51 1.7E-05 41.6 3.5 31 78-108 175-205 (521)
60 4ex5_A Lysine--tRNA ligase; st 86.1 0.51 1.7E-05 41.9 3.5 31 78-108 203-233 (529)
61 3i7f_A Aspartyl-tRNA synthetas 84.7 0.68 2.3E-05 41.2 3.7 33 77-109 242-274 (548)
62 1b7y_A Phers, protein (phenyla 79.0 1 3.5E-05 37.8 2.5 30 81-110 102-131 (350)
63 3pco_A Phenylalanyl-tRNA synth 78.4 1.9 6.6E-05 35.9 4.0 45 62-108 91-135 (327)
64 4ah6_A Aspartate--tRNA ligase, 76.9 1.7 5.8E-05 39.2 3.5 30 79-108 148-178 (617)
65 3mf2_A BLL0957 protein; aminoa 51.0 4.8 0.00017 33.9 1.1 49 66-115 51-99 (346)
66 2rhq_A Phenylalanyl-tRNA synth 47.2 13 0.00044 29.9 3.0 28 82-109 55-82 (294)
67 2ras_A Transcriptional regulat 44.7 21 0.00071 25.3 3.6 29 76-104 7-35 (212)
68 2fq4_A Transcriptional regulat 37.8 22 0.00076 25.0 2.8 26 78-103 10-35 (192)
69 2du7_A O-phosphoseryl-tRNA syn 37.8 19 0.00066 32.0 2.9 31 80-110 57-87 (549)
70 2g7s_A Transcriptional regulat 37.7 23 0.00079 24.3 2.8 29 76-104 4-32 (194)
71 2odr_B Phosphoseryl-tRNA synth 35.1 22 0.00074 32.4 2.8 29 81-109 66-94 (648)
72 2eh3_A Transcriptional regulat 35.0 22 0.00074 24.7 2.3 24 80-103 2-25 (179)
73 2odr_A Phosphoseryl-tRNA synth 34.7 22 0.00076 32.4 2.8 29 81-109 66-94 (665)
74 2odr_D Phosphoseryl-tRNA synth 34.2 23 0.00078 32.4 2.8 29 81-109 66-94 (685)
75 3bqz_B HTH-type transcriptiona 33.8 19 0.00066 24.9 1.9 25 79-103 1-25 (194)
76 2odr_C Phosphoseryl-tRNA synth 33.8 23 0.0008 32.5 2.8 29 81-109 66-94 (701)
77 3qqa_A CMER; alpha-helical, he 33.4 42 0.0014 23.5 3.7 28 76-103 15-42 (216)
78 2zb9_A Putative transcriptiona 33.3 32 0.0011 24.4 3.0 29 76-104 19-47 (214)
79 3b81_A Transcriptional regulat 32.9 31 0.0011 24.0 2.9 26 78-103 9-34 (203)
80 3qkx_A Uncharacterized HTH-typ 32.8 39 0.0013 23.0 3.4 28 77-104 5-32 (188)
81 3mvp_A TETR/ACRR transcription 32.6 49 0.0017 23.1 4.0 29 76-104 22-50 (217)
82 2iu5_A DHAS, YCEG, HTH-type dh 31.5 29 0.001 24.3 2.6 28 76-103 9-36 (195)
83 3qbm_A TETR transcriptional re 31.5 44 0.0015 23.0 3.5 27 77-103 4-30 (199)
84 2du3_A O-phosphoseryl-tRNA syn 31.5 29 0.00099 30.7 3.0 29 82-110 49-77 (534)
85 3vib_A MTRR; helix-turn-helix 30.5 34 0.0011 24.3 2.8 26 78-103 8-33 (210)
86 3anp_C Transcriptional repress 30.5 40 0.0014 23.7 3.2 26 79-104 8-33 (204)
87 1sgm_A Putative HTH-type trans 30.3 24 0.00083 24.2 1.9 25 79-103 5-29 (191)
88 3l4g_A Phenylalanyl-tRNA synth 28.4 36 0.0012 29.9 3.0 31 79-109 224-255 (508)
89 3bhq_A Transcriptional regulat 27.8 43 0.0015 23.7 3.0 26 78-103 10-35 (211)
90 2ko4_B General control protein 27.6 12 0.00042 21.0 -0.1 10 102-111 4-13 (34)
91 3him_A Probable transcriptiona 27.1 47 0.0016 23.0 3.0 25 79-103 15-39 (211)
92 1rkt_A Protein YFIR; transcrip 26.7 50 0.0017 23.3 3.1 25 79-103 11-35 (205)
93 3lwj_A Putative TETR-family tr 26.5 50 0.0017 22.9 3.1 26 78-103 10-35 (202)
94 3ig2_A Phenylalanyl-tRNA synth 26.3 60 0.0021 24.4 3.7 32 82-113 6-37 (213)
95 2qko_A Possible transcriptiona 26.2 45 0.0015 23.7 2.8 28 76-103 24-51 (215)
96 3cwr_A Transcriptional regulat 26.1 39 0.0013 23.4 2.4 26 79-104 16-41 (208)
97 3col_A Putative transcription 26.1 33 0.0011 23.5 2.0 26 79-104 9-34 (196)
98 2o7t_A Transcriptional regulat 26.0 60 0.0021 22.6 3.4 28 77-104 5-32 (199)
99 3kz9_A SMCR; transcriptional r 25.9 53 0.0018 22.6 3.1 27 78-104 15-41 (206)
100 3ica_A Phenylalanyl-tRNA synth 25.9 57 0.002 24.6 3.5 33 81-113 5-37 (213)
101 2xdn_A HTH-type transcriptiona 25.7 62 0.0021 22.8 3.5 26 78-103 9-34 (210)
102 2hyt_A TETR-family transcripti 25.4 65 0.0022 22.5 3.5 26 78-103 10-35 (197)
103 3kkc_A TETR family transcripti 25.3 42 0.0014 22.8 2.4 26 78-103 10-35 (177)
104 3pas_A TETR family transcripti 24.9 31 0.0011 23.6 1.7 28 76-103 4-31 (195)
105 3bjb_A Probable transcriptiona 24.7 57 0.002 23.2 3.2 27 77-103 19-45 (207)
106 3u5v_A Protein MAX, transcript 24.6 1.5E+02 0.005 19.1 5.6 43 8-50 18-63 (76)
107 3gk6_A Integron cassette prote 24.5 34 0.0011 24.8 1.8 45 64-109 107-157 (170)
108 3lhq_A Acrab operon repressor 24.4 63 0.0022 22.4 3.3 26 78-103 12-37 (220)
109 3ccy_A Putative TETR-family tr 24.3 56 0.0019 22.9 3.0 25 79-103 13-37 (203)
110 3q0w_A HTH-type transcriptiona 24.2 53 0.0018 23.8 2.9 29 76-104 40-68 (236)
111 1ytr_A Bacteriocin plantaricin 24.1 35 0.0012 17.7 1.3 13 86-98 14-26 (26)
112 3rd3_A Probable transcriptiona 24.0 49 0.0017 22.7 2.6 27 78-104 8-34 (197)
113 3jsj_A Putative TETR-family tr 24.0 49 0.0017 22.8 2.6 25 79-104 8-32 (190)
114 2ibd_A Possible transcriptiona 23.9 58 0.002 22.9 3.0 26 79-104 13-38 (204)
115 1t33_A Putative transcriptiona 23.7 54 0.0018 23.2 2.8 27 76-103 8-34 (224)
116 3cdl_A Transcriptional regulat 23.4 54 0.0019 23.1 2.8 25 79-103 8-32 (203)
117 2wui_A MEXZ, transcriptional r 23.4 64 0.0022 22.8 3.2 25 79-103 10-34 (210)
118 3dew_A Transcriptional regulat 23.2 53 0.0018 22.6 2.6 25 80-104 8-32 (206)
119 3s5r_A Transcriptional regulat 22.8 53 0.0018 22.9 2.6 26 79-104 9-34 (216)
120 3knw_A Putative transcriptiona 22.7 63 0.0022 22.5 3.0 27 78-104 12-38 (212)
121 3dcf_A Transcriptional regulat 22.7 69 0.0023 22.3 3.2 27 78-104 29-55 (218)
122 3on2_A Probable transcriptiona 22.7 55 0.0019 22.4 2.6 24 80-103 12-35 (199)
123 2nx4_A Transcriptional regulat 22.6 71 0.0024 22.3 3.3 25 79-103 9-33 (194)
124 2fd5_A Transcriptional regulat 22.5 71 0.0024 21.8 3.2 26 78-103 5-30 (180)
125 2id3_A Putative transcriptiona 22.5 70 0.0024 23.0 3.3 28 76-103 36-63 (225)
126 3egq_A TETR family transcripti 22.4 47 0.0016 22.5 2.2 25 80-104 4-28 (170)
127 3vpr_A Transcriptional regulat 22.3 61 0.0021 22.4 2.8 23 81-103 4-26 (190)
128 4hku_A LMO2814 protein, TETR t 22.2 47 0.0016 23.1 2.2 23 81-103 8-30 (178)
129 2f07_A YVDT; helix-turn-helix, 22.1 62 0.0021 22.7 2.9 25 80-104 10-34 (197)
130 3nrg_A TETR family transcripti 21.9 65 0.0022 22.5 2.9 24 80-103 13-36 (217)
131 2qtq_A Transcriptional regulat 21.9 62 0.0021 22.4 2.8 26 79-104 15-40 (213)
132 3vp5_A Transcriptional regulat 21.9 72 0.0025 22.3 3.2 24 80-103 12-35 (189)
133 3crj_A Transcription regulator 21.7 68 0.0023 22.6 3.0 26 79-104 13-38 (199)
134 2q24_A Putative TETR family tr 21.7 59 0.002 22.6 2.7 22 79-101 14-35 (194)
135 3f1b_A TETR-like transcription 21.6 70 0.0024 22.0 3.0 26 79-104 13-38 (203)
136 2dg8_A Putative TETR-family tr 21.6 44 0.0015 23.3 1.9 24 80-103 9-32 (193)
137 3c2b_A Transcriptional regulat 21.6 62 0.0021 22.8 2.8 25 79-103 14-38 (221)
138 3on4_A Transcriptional regulat 21.5 53 0.0018 22.4 2.4 25 80-104 10-34 (191)
139 3bru_A Regulatory protein, TET 21.5 69 0.0024 22.5 3.0 27 78-104 28-54 (222)
140 3he0_A Transcriptional regulat 21.4 62 0.0021 22.2 2.7 26 79-104 10-35 (196)
141 3ppb_A Putative TETR family tr 21.4 71 0.0024 21.7 3.0 24 80-103 9-32 (195)
142 3f0c_A TETR-molecule A, transc 21.0 67 0.0023 22.5 2.8 24 80-103 11-34 (216)
143 3l4g_B Phenylalanyl-tRNA synth 21.0 83 0.0028 27.7 3.9 29 82-110 393-421 (589)
144 1pb6_A Hypothetical transcript 20.9 74 0.0025 22.1 3.0 26 78-103 16-41 (212)
145 2w53_A Repressor, SMet; antibi 20.8 63 0.0022 22.9 2.7 24 80-103 11-34 (219)
146 2hyj_A Putative TETR-family tr 20.8 61 0.0021 22.9 2.6 27 78-104 10-36 (200)
147 1r8i_A TRAC; VIRB5, helical bu 20.7 51 0.0017 25.1 2.2 42 33-80 23-67 (213)
148 3gzi_A Transcriptional regulat 20.5 73 0.0025 22.3 3.0 26 78-103 15-40 (218)
149 3hta_A EBRA repressor; TETR fa 20.4 74 0.0025 22.8 3.0 25 79-103 27-51 (217)
150 2gen_A Probable transcriptiona 20.3 59 0.002 22.8 2.4 24 80-103 7-30 (197)
151 1vi0_A Transcriptional regulat 20.2 64 0.0022 22.9 2.6 24 80-103 8-31 (206)
152 2k5e_A Uncharacterized protein 20.1 86 0.0029 19.9 2.9 32 88-119 20-53 (73)
153 3mnl_A KSTR, transcriptional r 20.1 44 0.0015 23.1 1.7 28 76-103 16-43 (203)
No 1
>4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens}
Probab=99.90 E-value=3.7e-25 Score=194.53 Aligned_cols=137 Identities=48% Similarity=0.670 Sum_probs=73.4
Q ss_pred CccchHHHHHHHHHhhHHHHhhhcCCCChhhHHHHHHHHHHHHHhhchhhhcccccccCcccccCCCccccCChhhHHHH
Q psy1231 3 SAAPMADIQESIKAQGDVVRKLKSSKAPKEQIDEEVKKLLELKNQLKINDEANEDNSTHKFILKTPKGTRDYGPDSTVVR 82 (151)
Q Consensus 3 ~~~~~~~l~~~i~~qg~~VR~LK~~ka~k~~I~~~V~kLl~LK~ql~~~~~~~~~~~~~~~~~~~pkGtrD~lP~e~~~~ 82 (151)
.|++...|.+.|+.||+.+|.||+.++++..|+++|++|++||++++. + ..+.+|++++|+|||||+|.++.++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~l~~P~G~~D~lP~~~~~~ 84 (517)
T 4g85_A 11 QMAERAALEELVKLQGERVRGLKQQKASAELIEEEVAKLLKLKAQLGP-D-----ESKQKFVLKTPKGTRDYSPRQMAVR 84 (517)
T ss_dssp ---------------------------------------------------------CCCCCCCCCTTCCCBCHHHHHHH
T ss_pred ccccHHHHHHHHHHhhhhhcccccccCCHHHHHHHHHHHHHhhhhcCC-c-----ccccceeeeCCCCCCccCHHHHHHH
Confidence 366777889999999999999999999999999999999999999876 3 5677899999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCccccCCccccHHhhhcccCCccc------cc-chhhhhhHHhhCCCcchhhhhc
Q psy1231 83 NQVLDKIVKIFKKHGAVTIDTPIFELKEVLTGKYGVYWT------GY-STAVGFLMIHSVPSAPLWINWT 145 (151)
Q Consensus 83 ~~I~~~i~~~f~~~Gy~~IeTPv~E~~evf~~~~Ge~~~------~~-~~~~~~~~~~~~~~~~~~~~~~ 145 (151)
++|++.++++|++|||.+|+||+||+.|+|.+++|++.. |. .+.++++.+.+.|.+|+++.+.
T Consensus 85 ~~ie~~i~~~~~~~Gy~eI~tP~lE~~el~~~~~ge~~~~my~f~D~~g~~l~LRPd~T~~~aR~~~~~~ 154 (517)
T 4g85_A 85 EKVFDVIIRCFKRHGAEVIDTPVFELKETLMGKYGEDSKLIYDLKDQGGELLSLRYDLTVPFARYLAMNK 154 (517)
T ss_dssp HHHHHHHHHHHHHHTCEECBCCSEEEHHHHHCC------CSCBBCCTTSCCEEECSCSHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHCCCeEEECcccCcHHHhhcccCcCcceeEEEECCCCCEEEeCCcCcHHHHHHHHhCC
Confidence 999999999999999999999999999999999998632 22 5678899999999999887653
No 2
>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens}
Probab=99.61 E-value=1.6e-16 Score=136.63 Aligned_cols=86 Identities=45% Similarity=0.682 Sum_probs=71.1
Q ss_pred cCcccccCCCccccCChhhHHHHHHHHHHHHHHHHHcCCccccCCccccHHhhhcccCCcccc------c-chhhhhhHH
Q psy1231 60 THKFILKTPKGTRDYGPDSTVVRNQVLDKIVKIFKKHGAVTIDTPIFELKEVLTGKYGVYWTG------Y-STAVGFLMI 132 (151)
Q Consensus 60 ~~~~~~~~pkGtrD~lP~e~~~~~~I~~~i~~~f~~~Gy~~IeTPv~E~~evf~~~~Ge~~~~------~-~~~~~~~~~ 132 (151)
+.+|++++|+||+||+|.++..+++|++.++++|++|||++|+||+||++|+|.+++|++... . .+.++++.+
T Consensus 9 ~~~~~~~~p~G~~D~lP~~~~~~~~i~~~~~~~~~~~Gy~eI~tP~le~~el~~~~~g~~~~~~y~f~D~~g~~l~LRPd 88 (464)
T 4g84_A 9 RRQFVLKTPKGTRDYSPRQMAVREKVFDVIIRCFKRHGAEVIDTPVFELKETLMGKYGEDSKLIYDLKDQGGELLSLRYD 88 (464)
T ss_dssp ----CCCCCTTCCCBCHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHTTSCC----CCCBBCCCSSCCEEECSC
T ss_pred hhccceeCCCCcCccCHHHHHHHHHHHHHHHHHHHHCCCeEEECcccCcHHHhccccCcCcceeEEEECCCCCEEEeCCc
Confidence 557889999999999999999999999999999999999999999999999999999986422 2 566888888
Q ss_pred hhCCCcchhhhhc
Q psy1231 133 HSVPSAPLWINWT 145 (151)
Q Consensus 133 ~~~~~~~~~~~~~ 145 (151)
.+.|.+|+++.+.
T Consensus 89 ~T~~~aR~~~~~~ 101 (464)
T 4g84_A 89 LTVPFARYLAMNK 101 (464)
T ss_dssp SHHHHHHHHHHTT
T ss_pred CcHHHHHHHHhcC
Confidence 8888888887653
No 3
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP}
Probab=99.54 E-value=2.2e-15 Score=131.20 Aligned_cols=87 Identities=28% Similarity=0.368 Sum_probs=74.5
Q ss_pred cCcccccCCCccccCChhhHHHHHHHHHHHHHHHHHcCCccccCCccccHHhhhcccCCcccc-------c---------
Q psy1231 60 THKFILKTPKGTRDYGPDSTVVRNQVLDKIVKIFKKHGAVTIDTPIFELKEVLTGKYGVYWTG-------Y--------- 123 (151)
Q Consensus 60 ~~~~~~~~pkGtrD~lP~e~~~~~~I~~~i~~~f~~~Gy~~IeTPv~E~~evf~~~~Ge~~~~-------~--------- 123 (151)
..++.+++|+||+|++|+++..+++|++.++++|++|||.+|+||+||+.++|.++ |+..++ .
T Consensus 7 ~~~~~~~~p~G~~D~lP~~~~~~~~i~~~l~~~~~~~Gy~~i~tP~~E~~~~~~~~-G~~~ke~m~~~~d~~~~g~~~~~ 85 (465)
T 3net_A 7 NDKINFSTPSGFPEFLPSEKRLELYLLDTIRRVYESYGFTPIETPAVERLEVLQAK-GNQGDNIIYGLEPILPPNRQAEK 85 (465)
T ss_dssp --CCCCSCCTTCCCCCHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHGG-GCC--CBEEEEEEEC--------
T ss_pred CccccccCCCCccccCHHHHHHHHHHHHHHHHHHHHcCCEEeeccccccHHHHhcc-CCCCccceEEEeccccccccccc
Confidence 34567899999999999999999999999999999999999999999999999998 753232 1
Q ss_pred -------chhhhhhHHhhCCCcchhhhhccc
Q psy1231 124 -------STAVGFLMIHSVPSAPLWINWTNH 147 (151)
Q Consensus 124 -------~~~~~~~~~~~~~~~~~~~~~~~~ 147 (151)
.+.++++.++++|.+|+++...++
T Consensus 86 ~~~~~~~g~~l~LRpd~T~~~aR~~~~~~~~ 116 (465)
T 3net_A 86 DKSGDTGSEARALKFDQTVPLAAYIARHLND 116 (465)
T ss_dssp --------CCEEECSCSHHHHHHHHHHHGGG
T ss_pred ccccCCCCCEEEeCCCChHHHHHHHHhcccc
Confidence 256899999999999999987654
No 4
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A
Probab=99.48 E-value=6.4e-15 Score=128.51 Aligned_cols=87 Identities=21% Similarity=0.253 Sum_probs=75.4
Q ss_pred cCcc-cccCCCccccCChhhHHHHHHHHHHHHHHHHHcCCccccCCccccHHhhhcccCCccccc--------chhhhhh
Q psy1231 60 THKF-ILKTPKGTRDYGPDSTVVRNQVLDKIVKIFKKHGAVTIDTPIFELKEVLTGKYGVYWTGY--------STAVGFL 130 (151)
Q Consensus 60 ~~~~-~~~~pkGtrD~lP~e~~~~~~I~~~i~~~f~~~Gy~~IeTPv~E~~evf~~~~Ge~~~~~--------~~~~~~~ 130 (151)
+.+| .+++|+||+|++|.++.++++|++.++++|++|||.+|+||+||+.++|.+++|++..+. .+.++++
T Consensus 23 ~~~m~~~~~p~G~~d~lP~~~~~~~~i~~~i~~~~~~~Gy~eI~tP~lE~~el~~~~~G~~~~~~my~f~D~~g~~l~LR 102 (456)
T 3lc0_A 23 QKNMVETEPVQGCRDFPPEAMRCRRHLFDVFHATAKTFGFEEYDAPVLESEELYIRKAGEEITEQMFNFITKGGHRVALR 102 (456)
T ss_dssp --CCCCCSCSTTCCCCCHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEGGGGCCCSCCHHHHTCEEEECSSSCEEEEC
T ss_pred hhccccccCCCCCcccCHhHHHHHHHHHHHHHHHHHHCCCEEEECCcEeehhhhccccccchhhceEEEEcCCCCEEecC
Confidence 3344 689999999999999999999999999999999999999999999999999888753221 4678999
Q ss_pred HHhhCCCcchhhhhcc
Q psy1231 131 MIHSVPSAPLWINWTN 146 (151)
Q Consensus 131 ~~~~~~~~~~~~~~~~ 146 (151)
.+.+.|.+|+++++..
T Consensus 103 pd~T~~~aR~~~~~~~ 118 (456)
T 3lc0_A 103 PEMTPSLARLLLGKGR 118 (456)
T ss_dssp SCSHHHHHHHHHHSCT
T ss_pred CcCHHHHHHHHHhcCc
Confidence 9999999999988754
No 5
>3od1_A ATP phosphoribosyltransferase regulatory subunit; structural genomics, PSI-2, protein structure initiative; 1.97A {Bacillus halodurans}
Probab=99.42 E-value=4.9e-14 Score=121.12 Aligned_cols=82 Identities=20% Similarity=0.232 Sum_probs=71.2
Q ss_pred cccccCCCccccCChhhHHHHHHHHHHHHHHHHHcCCccccCCccccHHhhhcccCCccccc--------chhhhhhHHh
Q psy1231 62 KFILKTPKGTRDYGPDSTVVRNQVLDKIVKIFKKHGAVTIDTPIFELKEVLTGKYGVYWTGY--------STAVGFLMIH 133 (151)
Q Consensus 62 ~~~~~~pkGtrD~lP~e~~~~~~I~~~i~~~f~~~Gy~~IeTPv~E~~evf~~~~Ge~~~~~--------~~~~~~~~~~ 133 (151)
.+++++|+||+|++|.++.++++|++.++++|++|||.+|+||+||+.++|.++ |+...+. .+.++++.+.
T Consensus 7 ~~~~~~p~G~~d~lP~~~~~~~~i~~~l~~~~~~~Gy~eI~tP~lE~~el~~~~-g~~~~~~my~f~D~~g~~l~LRpd~ 85 (400)
T 3od1_A 7 PFMFEKPFGMRDTLPEWYKTKKNICDQMTEEINLWGYDMIETPTLEYYETVGVV-SAILDQQLFKLLDQQGNTLVLRPDM 85 (400)
T ss_dssp CCTTCCCTTCCCBCHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEETTTHHHH-SSSCGGGSCEEECTTSCEEEECSCS
T ss_pred hhcccCCCcchhcCHHHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHhhc-CCccccceEEEECCCCCEEEECCCC
Confidence 356899999999999999999999999999999999999999999999999876 4433221 4578899999
Q ss_pred hCCCcchhhhh
Q psy1231 134 SVPSAPLWINW 144 (151)
Q Consensus 134 ~~~~~~~~~~~ 144 (151)
+.|.+|++++.
T Consensus 86 T~~~aR~~~~~ 96 (400)
T 3od1_A 86 TAPIARLVASS 96 (400)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 99999988764
No 6
>2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP, aminoacyl-tRNA synthetase, ATP-binding, charcot-marie-tooth disease, disease mutation; HET: B4P; 2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A* 2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A
Probab=99.40 E-value=9.1e-14 Score=126.90 Aligned_cols=110 Identities=28% Similarity=0.467 Sum_probs=48.6
Q ss_pred chHHHHHHHHHhhHHHHhhhcCCCChhhHHHHHHHHHHHHHhhchhhhc-cc-c---c--------ccCcc------ccc
Q psy1231 6 PMADIQESIKAQGDVVRKLKSSKAPKEQIDEEVKKLLELKNQLKINDEA-NE-D---N--------STHKF------ILK 66 (151)
Q Consensus 6 ~~~~l~~~i~~qg~~VR~LK~~ka~k~~I~~~V~kLl~LK~ql~~~~~~-~~-~---~--------~~~~~------~~~ 66 (151)
.+..+...+.+||+.||.||+++|++..|+++|+.|..+|+.+..+... .. + + ..+-| .++
T Consensus 9 ~l~~~~~~v~~~~~~vr~lk~~~a~~~~i~~av~~l~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~r~gf~~~~~eiy~ 88 (693)
T 2zt5_A 9 VLAPLRLAVRQQGDLVRKLKEDKAPQVDVDKAVAELKARKRVLEAKELALQPKDDIVDRAKMEDTLKRRFFYDQAFAIYG 88 (693)
T ss_dssp -------------------------------------------------------CCCHHHHHHHHHHTTSEEETTGGGT
T ss_pred HHHHHHHHHHHhhHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHhhhhccccccccccHHHHHHHHHhCCCcccchhhcC
Confidence 3455678899999999999999999999999999999999998752111 00 0 0 01112 245
Q ss_pred CCCccccCChhhHHHHHHHHHHHHHHHHH-cCCccccCCccccHHhhhcc
Q psy1231 67 TPKGTRDYGPDSTVVRNQVLDKIVKIFKK-HGAVTIDTPIFELKEVLTGK 115 (151)
Q Consensus 67 ~pkGtrD~lP~e~~~~~~I~~~i~~~f~~-~Gy~~IeTPv~E~~evf~~~ 115 (151)
.++|++||+|..+.++++|++.|++.|.. .||.+|+||+|++.++|.++
T Consensus 89 g~~G~~d~lP~G~~l~~~Ie~~~r~~~~~~~g~~EV~tP~l~~~~lwk~S 138 (693)
T 2zt5_A 89 GVSGLYDFGPVGCALKNNIIQTWRQHFIQEEQILEIDCTMLTPEPVLKTS 138 (693)
T ss_dssp CCTTCEEECHHHHHHHHHHHHHHHHHTHHHHTCEECCCCSEEEHHHHHHH
T ss_pred CCCCeEEECCChHHHHHHHHHHHHHHHHHhcCcEEEEeCCcccHHHHhhc
Confidence 57999999999999999999999999985 69999999999999999876
No 7
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1
Probab=99.39 E-value=7.9e-14 Score=119.66 Aligned_cols=83 Identities=16% Similarity=0.207 Sum_probs=73.5
Q ss_pred cccccCCCccccCChhhHHHHHHHHHHHHHHHHHcCCccccCCccccHHhhhcccCCccc-------cc-chhhhhhHHh
Q psy1231 62 KFILKTPKGTRDYGPDSTVVRNQVLDKIVKIFKKHGAVTIDTPIFELKEVLTGKYGVYWT-------GY-STAVGFLMIH 133 (151)
Q Consensus 62 ~~~~~~pkGtrD~lP~e~~~~~~I~~~i~~~f~~~Gy~~IeTPv~E~~evf~~~~Ge~~~-------~~-~~~~~~~~~~ 133 (151)
+|.++.|+||+|++|.++.++++|++.++++|++|||++|.||+||+.|+|.+++|+... |. .+.++++.+.
T Consensus 3 ~~~~~~~~G~~d~lP~~~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~~~~~em~~~~D~~g~~l~LrPd~ 82 (434)
T 1wu7_A 3 RLQIEKIRGFRDFYPEDMDVEKFIFKTAEEAAEAFGFRRIDFPSLEYLDLYRIKSGEELLQQTYSFVDKGGREVTLIPEA 82 (434)
T ss_dssp CCCCCCCTTCCCBCHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEETHHHHTTSCTTGGGGSCEEECTTSCEEEECSCS
T ss_pred ccccCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCEEeeccccccHHHhhhccCCccccceEEEECCCCCEEEeCCCC
Confidence 466899999999999999999999999999999999999999999999999987776322 22 4678899999
Q ss_pred hCCCcchhhhh
Q psy1231 134 SVPSAPLWINW 144 (151)
Q Consensus 134 ~~~~~~~~~~~ 144 (151)
+.|.++.++++
T Consensus 83 t~~~aR~~~~~ 93 (434)
T 1wu7_A 83 TPSTVRMVTSR 93 (434)
T ss_dssp HHHHHHHHTTC
T ss_pred hHHHHHHHHhc
Confidence 99999999888
No 8
>1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A*
Probab=99.39 E-value=8.8e-14 Score=117.27 Aligned_cols=85 Identities=13% Similarity=0.190 Sum_probs=69.0
Q ss_pred cCcccccCCCccccCChhhHHHHHHHHHHHHHHHHHcCCccccCCccccHHhhhc---ccCCccc-------cc-chhhh
Q psy1231 60 THKFILKTPKGTRDYGPDSTVVRNQVLDKIVKIFKKHGAVTIDTPIFELKEVLTG---KYGVYWT-------GY-STAVG 128 (151)
Q Consensus 60 ~~~~~~~~pkGtrD~lP~e~~~~~~I~~~i~~~f~~~Gy~~IeTPv~E~~evf~~---~~Ge~~~-------~~-~~~~~ 128 (151)
+..+.++.|+||+|++|.++..+++|++.++++|.+|||.+|+||+||+.|+|.+ +.|+... |. .+.++
T Consensus 17 ~~~~~~~~~~G~~d~lP~~~~~~~~i~~~i~~~~~~~Gy~eI~tP~le~~el~~~s~~g~~~~~~~~my~~~D~~g~~l~ 96 (344)
T 1z7m_A 17 MEKINYLLPEESAEMTLNQVKSLRQIEGRLRKLFSLKNYQEVMPPSFEYTQLYTALESNGKTFNQEKMFQFIKHEGQSIT 96 (344)
T ss_dssp -----CCCCTTCCCCCHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHHHHCSSSCCCTTSCCEEECTTCCEEE
T ss_pred hhhccCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHcCCEEecCcccCcHHHHhhccCCccccccccEEEEECCCCCEEe
Confidence 3455689999999999999999999999999999999999999999999999987 3333222 11 45788
Q ss_pred hhHHhhCCCcchhhhh
Q psy1231 129 FLMIHSVPSAPLWINW 144 (151)
Q Consensus 129 ~~~~~~~~~~~~~~~~ 144 (151)
++.+.+.|.++.++..
T Consensus 97 LRpd~T~~~aR~~~~~ 112 (344)
T 1z7m_A 97 LRYDFTLPLVRLYSQI 112 (344)
T ss_dssp ECCCSHHHHHHHHHTC
T ss_pred cCCCCcHHHHHHHHhc
Confidence 8889999999888876
No 9
>1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP + L-histidine tRNA(His)-> AMP + PPI + L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A
Probab=99.39 E-value=1.3e-13 Score=117.46 Aligned_cols=83 Identities=16% Similarity=0.247 Sum_probs=73.0
Q ss_pred ccccCCCccccCChhhHHHHHHHHHHHHHHHHHcCCccccCCccccHHhhhcccCCcc----------ccc-chhhhhhH
Q psy1231 63 FILKTPKGTRDYGPDSTVVRNQVLDKIVKIFKKHGAVTIDTPIFELKEVLTGKYGVYW----------TGY-STAVGFLM 131 (151)
Q Consensus 63 ~~~~~pkGtrD~lP~e~~~~~~I~~~i~~~f~~~Gy~~IeTPv~E~~evf~~~~Ge~~----------~~~-~~~~~~~~ 131 (151)
|.+++|+||+|++|.++.++++|++.++++|++|||++|.||+||+.++|.+++|++. .|. .+.++++.
T Consensus 1 m~~~~~~G~~d~lP~~~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~~~d~~~~em~~~~D~~g~~l~Lrp 80 (421)
T 1h4v_B 1 MTARAVRGTKDLFGKELRMHQRIVATARKVLEAAGALELVTPIFEETQVFEKGVGAATDIVRKEMFTFQDRGGRSLTLRP 80 (421)
T ss_pred CCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHcCCEEecccccccHHHhhhccCCcccccccceEEEECCCCCEEeeCC
Confidence 3478999999999999999999999999999999999999999999999998877731 122 46789999
Q ss_pred HhhCCCcchhhhhc
Q psy1231 132 IHSVPSAPLWINWT 145 (151)
Q Consensus 132 ~~~~~~~~~~~~~~ 145 (151)
+.+.|.++.++++.
T Consensus 81 d~t~~~ar~~~~~~ 94 (421)
T 1h4v_B 81 EGTAAMVRAYLEHG 94 (421)
T ss_pred cchHHHHHHHHhcc
Confidence 99999999998764
No 10
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A*
Probab=99.37 E-value=8.5e-14 Score=118.67 Aligned_cols=83 Identities=14% Similarity=0.177 Sum_probs=72.0
Q ss_pred ccccCCCccccCChhhHHHHHHHHHHHHHHHHHcCCccccCCccccHHhhhcccCCcc----------ccc-chhhhhhH
Q psy1231 63 FILKTPKGTRDYGPDSTVVRNQVLDKIVKIFKKHGAVTIDTPIFELKEVLTGKYGVYW----------TGY-STAVGFLM 131 (151)
Q Consensus 63 ~~~~~pkGtrD~lP~e~~~~~~I~~~i~~~f~~~Gy~~IeTPv~E~~evf~~~~Ge~~----------~~~-~~~~~~~~ 131 (151)
|.+++|+||+|++|.++.++++|++.++++|++|||++|.||+||+.|+|.+++|++. .|+ .+.++++.
T Consensus 2 m~~~~~~G~~d~lP~~~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~~~d~~~~em~~~~D~~g~~l~Lrp 81 (423)
T 1htt_A 2 KNIQAIRGMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYTFEDRNGDSLTLRP 81 (423)
T ss_dssp -CCCCCTTCCCBCHHHHHHHHHHHHHHHHHHHTTTCEECBCCSEEEHHHHHHHHCSSSHHHHHTCEEEECTTSCEEEECS
T ss_pred CCCCCCCCccccCHHHHHHHHHHHHHHHHHHHHcCCEEecccccCHHHHHhhccCCchhhhhhheEEEEcCCCCEEEeCC
Confidence 3478999999999999999999999999999999999999999999999998877631 122 46788888
Q ss_pred HhhCCCcchhhhhc
Q psy1231 132 IHSVPSAPLWINWT 145 (151)
Q Consensus 132 ~~~~~~~~~~~~~~ 145 (151)
+.+.|.++.++++.
T Consensus 82 d~t~~~aR~~~~~~ 95 (423)
T 1htt_A 82 EGTAGCVRAGIEHG 95 (423)
T ss_dssp CSHHHHHHHHHHHT
T ss_pred CchHHHHHHHHhcc
Confidence 99999999988764
No 11
>3rac_A Histidine-tRNA ligase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, PSI-BIO; 2.30A {Alicyclobacillus acidocaldarius subsp}
Probab=99.36 E-value=2.1e-13 Score=116.23 Aligned_cols=80 Identities=18% Similarity=0.160 Sum_probs=69.6
Q ss_pred cccCCCccccCChhhHHHHHHHHHHHHHHHHHcCCccccCCccccHHhhhcccCCccc--------cc-chhhhhhHHhh
Q psy1231 64 ILKTPKGTRDYGPDSTVVRNQVLDKIVKIFKKHGAVTIDTPIFELKEVLTGKYGVYWT--------GY-STAVGFLMIHS 134 (151)
Q Consensus 64 ~~~~pkGtrD~lP~e~~~~~~I~~~i~~~f~~~Gy~~IeTPv~E~~evf~~~~Ge~~~--------~~-~~~~~~~~~~~ 134 (151)
.+++|+||+|++|.++..+++|++.++++|++|||.+|+||+||+.++|.++ |+... |. .+.++++.+.+
T Consensus 22 ~~~~p~G~~d~lP~~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~el~~~~-g~~~~~~~my~~~D~~g~~l~LRpd~T 100 (373)
T 3rac_A 22 FADRPPGMQDGYPDFAKRRRAVETRLLSFVEDAGYEPVTSGLFEYVDTLLRA-RSPESSRDWIRLFDGGGDAVALRPEMT 100 (373)
T ss_dssp CCCCCTTCCCCCTTHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHTT-SCTTSCCCCCBCCCCSSSCEEECSSSH
T ss_pred cCCCCCCccccCHHHHHHHHHHHHHHHHHHHHcCCeEEECCceeeHHHHhhc-CCccchhceEEEECCCCCEEEECCcCH
Confidence 4789999999999999999999999999999999999999999999999886 43222 11 46788999999
Q ss_pred CCCcchhhhh
Q psy1231 135 VPSAPLWINW 144 (151)
Q Consensus 135 ~~~~~~~~~~ 144 (151)
.|.++.+++.
T Consensus 101 ~~~aR~~~~~ 110 (373)
T 3rac_A 101 PSIARMAAPR 110 (373)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 9999988764
No 12
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis}
Probab=99.33 E-value=3.5e-13 Score=117.60 Aligned_cols=88 Identities=16% Similarity=0.125 Sum_probs=72.5
Q ss_pred cccCcccccCCCccccCChhhHHHHHHHHHHHHHHHHHcCCccccCCccccHHhhhcccCCcc----------ccc--ch
Q psy1231 58 NSTHKFILKTPKGTRDYGPDSTVVRNQVLDKIVKIFKKHGAVTIDTPIFELKEVLTGKYGVYW----------TGY--ST 125 (151)
Q Consensus 58 ~~~~~~~~~~pkGtrD~lP~e~~~~~~I~~~i~~~f~~~Gy~~IeTPv~E~~evf~~~~Ge~~----------~~~--~~ 125 (151)
+++.-+.++.|+||+||+|.++.++++|++.++++|++|||.+|.||+||+.++|.+++|++. .|. .+
T Consensus 25 ~~~~~~~~~~~~G~~d~lP~~~~~~~~l~~~i~~~~~~~Gy~eI~tP~le~~el~~~~~G~~~d~~~~~my~~~D~~~g~ 104 (467)
T 4e51_A 25 QKRKLEKLTGVKGMNDILPQDAGLWEFFEATVKSLLRAYGYQNIRTPIVEHTPLFTRGIGEVTDIVEKEMYSFVDALNGE 104 (467)
T ss_dssp -----CCCCCCTTCCCBCHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHTCTTSHHHHHTCCEEECTTTCC
T ss_pred hhhhhcCCCCCCCceeeCHHHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHhhhccCCcccccccceEEEecCCCCC
Confidence 333234799999999999999999999999999999999999999999999999999878721 122 24
Q ss_pred hhhhhHHhhCCCcchhhhhc
Q psy1231 126 AVGFLMIHSVPSAPLWINWT 145 (151)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~ 145 (151)
.++++.+.+.|.++.++++.
T Consensus 105 ~l~LRPd~t~~~ar~~~~~~ 124 (467)
T 4e51_A 105 NLTLRPENTAAVVRAAIEHN 124 (467)
T ss_dssp EEEECSCSHHHHHHHHHHTT
T ss_pred EEEeCcccHHHHHHHHHHcc
Confidence 58889999999999988754
No 13
>1x59_A Histidyl-tRNA synthetase; hisrs, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.28 E-value=6.8e-12 Score=84.85 Aligned_cols=67 Identities=51% Similarity=0.630 Sum_probs=60.1
Q ss_pred CCccchHHHHHHHHHhhHHHHhhhcCCCChhhHHHHHHHHHHHHHhhchhhhcccccccCcccccCCCccccC
Q psy1231 2 SSAAPMADIQESIKAQGDVVRKLKSSKAPKEQIDEEVKKLLELKNQLKINDEANEDNSTHKFILKTPKGTRDY 74 (151)
Q Consensus 2 ~~~~~~~~l~~~i~~qg~~VR~LK~~ka~k~~I~~~V~kLl~LK~ql~~~~~~~~~~~~~~~~~~~pkGtrD~ 74 (151)
|.|.+...+.+.|..||++||.||..++++..|+++|++|+++|+++.. + ..+.+|.+++|+||+|-
T Consensus 6 ~~~~~~~~i~~~i~~qg~lvR~LK~~k~~~~~I~eev~kl~~~ka~l~~-~-----~~k~kf~LKTPKGT~~~ 72 (73)
T 1x59_A 6 SGMAERAALEELVKLQGERVRGLKQQKASAELIEEEVAKLLKLKAQLGP-D-----ESKQKFVLKTPKSGPSS 72 (73)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHCC-C-----CCSCCCCCCSTTCCCCC
T ss_pred ccccCHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhhcCc-c-----ccccceeeeCCCCCCCC
Confidence 3456678889999999999999999999999999999999999999965 3 46789999999999995
No 14
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1
Probab=99.18 E-value=5e-12 Score=107.47 Aligned_cols=82 Identities=17% Similarity=0.263 Sum_probs=66.3
Q ss_pred cccCCCccccCChhhHHHHHHHHHHHHHHHHHcCCccccCCccccHHhhhcccCCccc----------cc-chhhhhhHH
Q psy1231 64 ILKTPKGTRDYGPDSTVVRNQVLDKIVKIFKKHGAVTIDTPIFELKEVLTGKYGVYWT----------GY-STAVGFLMI 132 (151)
Q Consensus 64 ~~~~pkGtrD~lP~e~~~~~~I~~~i~~~f~~~Gy~~IeTPv~E~~evf~~~~Ge~~~----------~~-~~~~~~~~~ 132 (151)
++++|+||+|++|.++.++++|++.++++|.+|||.+|.||+||+.++|.+++|+... |. .+.++++.+
T Consensus 1 m~~~~~G~~~~~p~~~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~~~g~~~~~~~~~m~~~~D~~g~~~~Lrp~ 80 (420)
T 1qe0_A 1 MIKIPRGTQDILPEDSKKWRYIENQLDELMTFYNYKEIRTPIFESTDLFARGVGDSTDVVQKEMYTFKDKGDRSITLRPE 80 (420)
T ss_dssp CCCCCTTCCCBCHHHHHHHHHHHHHHHHHHHHHTCEECBCCSEEEHHHHCC-----------CCEEECHHHHCCEEECSC
T ss_pred CCCCCCcccccCHHHHHHHHHHHHHHHHHHHHcCCEEccCcccchHHHhhhccCCccchhhhheEEEEcCCCCEEEeCCC
Confidence 3689999999999999999999999999999999999999999999999988765321 11 345778888
Q ss_pred hhCCCcchhhhhc
Q psy1231 133 HSVPSAPLWINWT 145 (151)
Q Consensus 133 ~~~~~~~~~~~~~ 145 (151)
.+.|.++.++++.
T Consensus 81 ~t~~~~r~~~~~~ 93 (420)
T 1qe0_A 81 GTAAVVRSYIEHK 93 (420)
T ss_dssp SHHHHHHHHHHTT
T ss_pred ChHHHHHHHHhcc
Confidence 8888888887664
No 15
>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A*
Probab=98.83 E-value=4.9e-10 Score=97.21 Aligned_cols=86 Identities=12% Similarity=0.111 Sum_probs=64.0
Q ss_pred ccccCCCccccCChhhHHHHHHHHHHHHHHHHHcCCccccCCccccHHhhhcccCC------cc---ccc-chhhhhhH-
Q psy1231 63 FILKTPKGTRDYGPDSTVVRNQVLDKIVKIFKKHGAVTIDTPIFELKEVLTGKYGV------YW---TGY-STAVGFLM- 131 (151)
Q Consensus 63 ~~~~~pkGtrD~lP~e~~~~~~I~~~i~~~f~~~Gy~~IeTPv~E~~evf~~~~Ge------~~---~~~-~~~~~~~~- 131 (151)
|..+.|+|++||+|.++.++++|++.+++.|.++||.+|.||+||+.++|.++ |. +. .+. .+.++++.
T Consensus 51 ~i~~~~~G~~d~lP~g~~~~~~i~~~ir~~~~~~G~~ei~tP~l~~~el~~~s-g~~d~~~~em~~~~d~~~~~~~LrPt 129 (458)
T 2i4l_A 51 MLRQEAAGIYAWLPLGHRVLKKIEQIVREEQNRAGAIELLMPTLQLADLWRES-GRYDAYGPEMLRIADRHKRELLYGPT 129 (458)
T ss_dssp CEEEEETTEEEECHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHH-THHHHSCTTSEEEECTTCCEEEECSC
T ss_pred CeeccCCcceEECCCHHHHHHHHHHHHHHHHHHcCCEEEEcCccCcHHHHHhc-CCccccccceEEEEeCCCCeEEECCC
Confidence 44567999999999999999999999999999999999999999999999775 43 11 111 23445555
Q ss_pred --HhhCCCcchhhhhccccC
Q psy1231 132 --IHSVPSAPLWINWTNHLG 149 (151)
Q Consensus 132 --~~~~~~~~~~~~~~~~~~ 149 (151)
..+.+.++.|..-.+.+|
T Consensus 130 ~ee~t~~i~r~~~~s~~~lP 149 (458)
T 2i4l_A 130 NEEMITEIFRAYIKSYKSLP 149 (458)
T ss_dssp CHHHHHHHHHHHCCBGGGCS
T ss_pred ChHHHHHHHHHHHhhccccC
Confidence 555556665554333443
No 16
>3a32_A Probable threonyl-tRNA synthetase 1; aeropyrum pernix K1, protein biosynthesis, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; 2.30A {Aeropyrum pernix} PDB: 3a31_A
Probab=98.81 E-value=1.1e-09 Score=95.26 Aligned_cols=78 Identities=14% Similarity=0.202 Sum_probs=64.2
Q ss_pred CCCccccCChhhHHHHHHHHHHHHHHHHHcCCccccCCccccHHhhhcccCCcc-c------cc-chhhhhhHHhhCCCc
Q psy1231 67 TPKGTRDYGPDSTVVRNQVLDKIVKIFKKHGAVTIDTPIFELKEVLTGKYGVYW-T------GY-STAVGFLMIHSVPSA 138 (151)
Q Consensus 67 ~pkGtrD~lP~e~~~~~~I~~~i~~~f~~~Gy~~IeTPv~E~~evf~~~~Ge~~-~------~~-~~~~~~~~~~~~~~~ 138 (151)
.|+|++||+|.++.++++|++.++++|.+|||.+|.||+||+.++|.++.+.+. . +. ...++++.....|.+
T Consensus 37 ~~~G~~d~lP~g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~sg~~~~~~~emy~~d~~~~~l~LRP~~t~~i~ 116 (471)
T 3a32_A 37 TGAGVPLFSLGGGPIRYALAEVLAKFHARRGYYVVETPIIASTELFKVSGHIEFYRNNMYLFDIEGHEFAVKPMNCPYHI 116 (471)
T ss_dssp HCTTCCCBCTTHHHHHHHHHHHHHHHHHHTTCEECCCCSEEETHHHHHTCCCTTGGGGSEEEEETTEEEEECSCSHHHHH
T ss_pred cCCEEEEECchHHHHHHHHHHHHHHHHHHcCCEEEECCeeeehHHhhhccCccccccceEEEecCCcEEEEccccHHHHH
Confidence 799999999999999999999999999999999999999999999987643211 1 11 345677777777777
Q ss_pred chhhhh
Q psy1231 139 PLWINW 144 (151)
Q Consensus 139 ~~~~~~ 144 (151)
+.+.+|
T Consensus 117 ~~~~~~ 122 (471)
T 3a32_A 117 LLFLNE 122 (471)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 777777
No 17
>1d2d_A TRNA synthetase, tRNA ligase; tRNA synthetase (ligase), protein transcription; NMR {Cricetulus griseus} SCOP: a.16.1.3 PDB: 1r1b_A
Probab=98.77 E-value=4.6e-09 Score=68.33 Aligned_cols=41 Identities=51% Similarity=0.724 Sum_probs=38.6
Q ss_pred HHHHHHHhhHHHHhhhcCCCChhhHHHHHHHHHHHHHhhch
Q psy1231 10 IQESIKAQGDVVRKLKSSKAPKEQIDEEVKKLLELKNQLKI 50 (151)
Q Consensus 10 l~~~i~~qg~~VR~LK~~ka~k~~I~~~V~kLl~LK~ql~~ 50 (151)
|...|++||+.||.||++++++..|+++|++|+.||++|+.
T Consensus 2 L~~~V~~QG~~VR~LKa~kA~k~~i~~aV~~Ll~LK~~~~~ 42 (59)
T 1d2d_A 2 VYDKIAAQGEVVRKLKAEKAPKAKVTEAVECLLSLKAEYKE 42 (59)
T ss_dssp CCHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHCS
T ss_pred hHHHHHHhHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 35789999999999999999999999999999999999986
No 18
>1fyj_A Multifunctional aminoacyl-tRNA synthetase; helix-turn-helix, ligase; NMR {Homo sapiens} SCOP: a.16.1.3
Probab=98.77 E-value=1.1e-08 Score=65.80 Aligned_cols=44 Identities=48% Similarity=0.669 Sum_probs=41.5
Q ss_pred hHHHHHHHHHhhHHHHhhhcCCCChhhHHHHHHHHHHHHHhhch
Q psy1231 7 MADIQESIKAQGDVVRKLKSSKAPKEQIDEEVKKLLELKNQLKI 50 (151)
Q Consensus 7 ~~~l~~~i~~qg~~VR~LK~~ka~k~~I~~~V~kLl~LK~ql~~ 50 (151)
...+...|.+||+.||.||+.++++..|+.+|++|+.||.+|+.
T Consensus 2 ~~~l~~~v~~qG~~VR~LKa~kA~k~~i~~aV~~Ll~lK~~~~~ 45 (57)
T 1fyj_A 2 SLVLYNRVAVQGDVVRELKAKKAPKEDVDAAVKQLLSLKAEYKE 45 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 36789999999999999999999999999999999999999976
No 19
>1nj8_A Proline-tRNA synthetase, proline--tRNA ligase; class-II tRNA synthetase; 3.20A {Methanocaldococcus jannaschii} SCOP: c.51.1.1 d.68.5.1 d.104.1.1
Probab=98.76 E-value=2.4e-09 Score=93.18 Aligned_cols=80 Identities=15% Similarity=0.153 Sum_probs=66.3
Q ss_pred cCCCccccCChhhHHHHHHHHHHHHHHHHHcCCccccCCccccHHhhhcccCCc------c---ccc-----chhhhhhH
Q psy1231 66 KTPKGTRDYGPDSTVVRNQVLDKIVKIFKKHGAVTIDTPIFELKEVLTGKYGVY------W---TGY-----STAVGFLM 131 (151)
Q Consensus 66 ~~pkGtrD~lP~e~~~~~~I~~~i~~~f~~~Gy~~IeTPv~E~~evf~~~~Ge~------~---~~~-----~~~~~~~~ 131 (151)
..++|++|++|.++.++++|++.++++|+++||.+|.||+||+.++|.++.|.. . .+. ...++++.
T Consensus 25 ~~~~G~~d~lP~g~~l~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~~~G~~~~~~~emy~~~d~g~~~~~~~l~LRP 104 (459)
T 1nj8_A 25 YPIKGCGVYLPYGFKIRRYTFEIIRNLLDESGHDEALFPMLIPEDLLAKEAEHIKGFEDEVYWVTHGGKTQLDVKLALRP 104 (459)
T ss_dssp STTSSCCBBCHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHCSSSGGGGGGCEEEEESSSSEEEEEEEECS
T ss_pred CCCCceEEECChHHHHHHHHHHHHHHHHHHcCCEEeeCCcccCHHHHhhhcCcccccchhhEEEeccCcccCCCeeEECC
Confidence 468999999999999999999999999999999999999999999998766641 0 111 34577777
Q ss_pred HhhCCCcchhhhhc
Q psy1231 132 IHSVPSAPLWINWT 145 (151)
Q Consensus 132 ~~~~~~~~~~~~~~ 145 (151)
....|.++.+.+|.
T Consensus 105 ~~~~~i~~~~~~~~ 118 (459)
T 1nj8_A 105 TSETPIYYMMKLWV 118 (459)
T ss_dssp SSHHHHHHHHHTTC
T ss_pred CCcHHHHHHHHHhh
Confidence 77777777777774
No 20
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A*
Probab=98.69 E-value=1.1e-08 Score=86.76 Aligned_cols=78 Identities=8% Similarity=0.026 Sum_probs=61.7
Q ss_pred cCCCccccCChhhHHHHHHHHHHHHHHHHHcCCccccCCccccHHhhhcccCCc------c--ccc-chhhhhhHHhhCC
Q psy1231 66 KTPKGTRDYGPDSTVVRNQVLDKIVKIFKKHGAVTIDTPIFELKEVLTGKYGVY------W--TGY-STAVGFLMIHSVP 136 (151)
Q Consensus 66 ~~pkGtrD~lP~e~~~~~~I~~~i~~~f~~~Gy~~IeTPv~E~~evf~~~~Ge~------~--~~~-~~~~~~~~~~~~~ 136 (151)
+.++||+||+|.++.++++|++.+++.|.++||.+|.||+||+.++|.+ +|.. . .+. ...++++.....|
T Consensus 17 ~~~~G~~d~lP~g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~-sG~~~~~~~em~~~d~~~~~~~LrP~~~~~ 95 (401)
T 1evl_A 17 EEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEK-TGHWDNYKDAMFTTSSENREYCIKPMNCPG 95 (401)
T ss_dssp TTSTTCCEECHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHH-HTHHHHSGGGCCEEEETTEEEEECSCSHHH
T ss_pred CCCCcceEECchHHHHHHHHHHHHHHHHHHcCCEEEECCeeccHHHHHh-cCcHhhhchhhEeEecCCceEEEcCCCCHH
Confidence 4589999999999999999999999999999999999999999999987 4641 0 011 2345566666666
Q ss_pred Ccchhhhh
Q psy1231 137 SAPLWINW 144 (151)
Q Consensus 137 ~~~~~~~~ 144 (151)
.++.+.+|
T Consensus 96 ~~~~~~~~ 103 (401)
T 1evl_A 96 HVQIFNQG 103 (401)
T ss_dssp HHHHHTSS
T ss_pred HHHHHHhh
Confidence 66666665
No 21
>1hc7_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP + L-proline + tRNA(Pro) AMP + PPI + L-prolyl-tRNA(Pro); 2.43A {Thermus thermophilus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1h4q_A* 1h4t_A 1h4s_A
Probab=98.68 E-value=7.5e-09 Score=90.62 Aligned_cols=80 Identities=15% Similarity=0.216 Sum_probs=59.2
Q ss_pred ccCCCccccCChhhHHHHHHHHHHHHHHHHHcCCccccCCccccHHhhhcccCC------cc---ccc-----chhhhhh
Q psy1231 65 LKTPKGTRDYGPDSTVVRNQVLDKIVKIFKKHGAVTIDTPIFELKEVLTGKYGV------YW---TGY-----STAVGFL 130 (151)
Q Consensus 65 ~~~pkGtrD~lP~e~~~~~~I~~~i~~~f~~~Gy~~IeTPv~E~~evf~~~~Ge------~~---~~~-----~~~~~~~ 130 (151)
+..++|++||+|.++.++++|++.+++.|+++||.+|.||+||+.++|.++.|. +. .+. ...++++
T Consensus 30 ~~~~~G~~d~lP~g~~l~~~I~~~~r~~~~~~G~~ei~tP~l~~~el~~~~sgh~d~f~~emy~~~d~g~~~l~~~l~LR 109 (477)
T 1hc7_A 30 YGPVRGTIVVRPYGYAIWENIQQVLDRMFKETGHQNAYFPLFIPMSFLRKEAEHVEGFSPELAVVTHAGGEELEEPLAVR 109 (477)
T ss_dssp ECSSTTCEEECHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEESTTC---------CCTTCEEEEEESSSEEEEEEEEC
T ss_pred ecCCCCeEEECccHHHHHHHHHHHHHHHHHHcCCEEEecCccccHHHHhhcCCcccccccceEEEECCCCccCCCeEEEc
Confidence 556999999999999999999999999999999999999999999999875453 21 111 2345556
Q ss_pred HHhhCCCcchhhhh
Q psy1231 131 MIHSVPSAPLWINW 144 (151)
Q Consensus 131 ~~~~~~~~~~~~~~ 144 (151)
.....+.++.+.+|
T Consensus 110 P~~~~~i~~~~~~~ 123 (477)
T 1hc7_A 110 PTSETVIGYMWSKW 123 (477)
T ss_dssp SCSHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHhh
Confidence 55555555666665
No 22
>2djv_A Methionyl-tRNA synthetase; EC 6.1.1.10, WHEP-TRS domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.65 E-value=2.3e-08 Score=68.50 Aligned_cols=45 Identities=40% Similarity=0.690 Sum_probs=42.3
Q ss_pred chHHHHHHHHHhhHHHHhhhcCCCChhhHHHHHHHHHHHHHhhch
Q psy1231 6 PMADIQESIKAQGDVVRKLKSSKAPKEQIDEEVKKLLELKNQLKI 50 (151)
Q Consensus 6 ~~~~l~~~i~~qg~~VR~LK~~ka~k~~I~~~V~kLl~LK~ql~~ 50 (151)
+...+...|+.||+.||.||+.++++.+|+++|++|+.||++|+.
T Consensus 14 ~~~~l~~~V~~QG~~VR~LKa~kA~k~~i~~aV~~Ll~LKa~l~~ 58 (79)
T 2djv_A 14 QIQALMDEVTKQGNIVRELKAQKADKNEVAAEVAKLLDLKKQLAV 58 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCcHhHhhHHHHHHHHHHHHHHH
Confidence 456789999999999999999999999999999999999999986
No 23
>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A*
Probab=98.52 E-value=3.5e-08 Score=87.29 Aligned_cols=78 Identities=17% Similarity=0.098 Sum_probs=59.5
Q ss_pred cCCCccccCChhhHHHHHHHHHHHHHHHHHcCCccccCCccccHHhhhcccCC------cc---ccc-chhhhhhHHhhC
Q psy1231 66 KTPKGTRDYGPDSTVVRNQVLDKIVKIFKKHGAVTIDTPIFELKEVLTGKYGV------YW---TGY-STAVGFLMIHSV 135 (151)
Q Consensus 66 ~~pkGtrD~lP~e~~~~~~I~~~i~~~f~~~Gy~~IeTPv~E~~evf~~~~Ge------~~---~~~-~~~~~~~~~~~~ 135 (151)
+.++|++||+|.++.++++|++.+++.|.+|||.+|.||+||+.++|.++ |. +. .+. .+.++++.....
T Consensus 34 ~~~~G~~~~lP~g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~s-G~~~~~~~~m~~~~d~~~~~~~LrP~~~~ 112 (572)
T 2j3l_A 34 QVAAGIYSYLPLANRVLEKLKTIMREEFEKIDAVEMLMPALLPAELWKES-GRYETYGPNLYRLKDRNDRDYILGPTHEE 112 (572)
T ss_dssp EEETTEEEECHHHHHHHHHHHHHHHHHHHTTTCEECBCCSEEETHHHHHH-SHHHHSCTTSCEEECTTCCEEEECSCCHH
T ss_pred ccCCCeeeeCCHHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHHhc-CCccccchheEEEecCCCCeEEEccccHH
Confidence 45899999999999999999999999999999999999999999999765 53 11 111 234455555555
Q ss_pred CCcchhhhh
Q psy1231 136 PSAPLWINW 144 (151)
Q Consensus 136 ~~~~~~~~~ 144 (151)
|.++++.+|
T Consensus 113 ~~~~~~~~~ 121 (572)
T 2j3l_A 113 TFTELIRDE 121 (572)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 555555554
No 24
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Probab=98.51 E-value=7.4e-08 Score=86.75 Aligned_cols=110 Identities=13% Similarity=0.107 Sum_probs=76.5
Q ss_pred CCChhhHHHHHHHHHHHHHh----hchhhhcccccccCcccccCCCccccCChhhHHHHHHHHHHHHHHHHHcCCccccC
Q psy1231 28 KAPKEQIDEEVKKLLELKNQ----LKINDEANEDNSTHKFILKTPKGTRDYGPDSTVVRNQVLDKIVKIFKKHGAVTIDT 103 (151)
Q Consensus 28 ka~k~~I~~~V~kLl~LK~q----l~~~~~~~~~~~~~~~~~~~pkGtrD~lP~e~~~~~~I~~~i~~~f~~~Gy~~IeT 103 (151)
.+++.++.+-++.|.+.+.. +.. + ..--.+....++|++||+|.++.++++|++.+++.|.++||.+|.|
T Consensus 222 ~~~~~~l~~~~~~l~ea~~rdhr~lg~-~-----l~l~~~~~~~~~G~~~~lP~g~~~~~~l~~~ir~~~~~~Gy~eV~t 295 (645)
T 1nyr_A 222 FFDKKELKAHLQMLEERKERDHRKIGK-E-----LELFTNSQLVGAGLPLWLPNGATIRREIERYIVDKEVSMGYDHVYT 295 (645)
T ss_dssp ESSHHHHHHHHHHHHHHHHTCHHHHHH-H-----TTCEEEETTTEEEEEEECHHHHHHHHHHHHHHHHHHHHTTEEECBC
T ss_pred cCCHHHhhhhhhhhhhhhhhhHHHHhh-h-----cceEEecccCCCceeEECCCHHHHHHHHHHHHHHHHHHcCCEEEEC
Confidence 35667777777777764432 110 0 0001122234899999999999999999999999999999999999
Q ss_pred CccccHHhhhcccCC------cc---ccc-c-hhhhhhHHhhCCCcchhhhh
Q psy1231 104 PIFELKEVLTGKYGV------YW---TGY-S-TAVGFLMIHSVPSAPLWINW 144 (151)
Q Consensus 104 Pv~E~~evf~~~~Ge------~~---~~~-~-~~~~~~~~~~~~~~~~~~~~ 144 (151)
|+||+.++|.++ |. +. .+. . +.++++.....|.++.+.++
T Consensus 296 P~l~~~~l~~~s-G~~d~~~~~mf~~~d~~~~~~~~LrP~~~~~~~~~~~~~ 346 (645)
T 1nyr_A 296 PVLANVDLYKTS-GHWDHYQEDMFPPMQLDETESMVLRPMNCPHHMMIYANK 346 (645)
T ss_dssp CSEEETHHHHHH-THHHHCTTSSCCCEEETTTEEEEECSSSHHHHHHHHHTS
T ss_pred CeeccHHHHhhC-CCccccccCcceeEecCCCeEEEeCCCCCHHHHHHHHhh
Confidence 999999999876 42 11 111 2 45566666666666666665
No 25
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1
Probab=98.29 E-value=4.2e-07 Score=82.13 Aligned_cols=52 Identities=10% Similarity=0.060 Sum_probs=48.8
Q ss_pred cCCCccccCChhhHHHHHHHHHHHHHHHHHcCCccccCCccccHHhhhcccCC
Q psy1231 66 KTPKGTRDYGPDSTVVRNQVLDKIVKIFKKHGAVTIDTPIFELKEVLTGKYGV 118 (151)
Q Consensus 66 ~~pkGtrD~lP~e~~~~~~I~~~i~~~f~~~Gy~~IeTPv~E~~evf~~~~Ge 118 (151)
+.++|++||+|..+.+++.|++.+++.|.++||.+|.||+|++.++|.++ |.
T Consensus 258 ~~~~G~~~~lP~g~~l~~~l~~~~r~~~~~~Gy~ev~tP~l~~~~l~~~s-Gh 309 (642)
T 1qf6_A 258 EEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKT-GH 309 (642)
T ss_dssp TTSTTCCEECHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEETHHHHHH-SH
T ss_pred cCCCCcEEECCcHHHHHHHHHHHHHHHHHHcCCEEEECCcCccHHHHhhc-Cc
Confidence 45999999999999999999999999999999999999999999999874 64
No 26
>1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase,; HET: 5CA; 2.55A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A*
Probab=98.28 E-value=1.5e-07 Score=82.92 Aligned_cols=80 Identities=14% Similarity=0.194 Sum_probs=64.5
Q ss_pred cCCCccccCChhhHHHHHHHHHHHHHHHHHcCCccccCCccccHHhhhcccCC------cc---ccc-----chhhhhhH
Q psy1231 66 KTPKGTRDYGPDSTVVRNQVLDKIVKIFKKHGAVTIDTPIFELKEVLTGKYGV------YW---TGY-----STAVGFLM 131 (151)
Q Consensus 66 ~~pkGtrD~lP~e~~~~~~I~~~i~~~f~~~Gy~~IeTPv~E~~evf~~~~Ge------~~---~~~-----~~~~~~~~ 131 (151)
..++|++||+|.++.++++|++.+++.|.+ ||.+|.||+|++.++|.++.|. +. .+. ...++++.
T Consensus 58 ~~~~G~~~~~P~g~~l~~~i~~~~~~~~~~-G~~ei~tP~l~~~~l~~~~sG~~~~f~~emy~~~d~g~~~~~~~l~LrP 136 (501)
T 1nj1_A 58 YPVKGMHVWMPHGFMIRKNTLKILRRILDR-DHEEVLFPLLVPEDELAKEAIHVKGFEDEVYWVTHGGLSKLQRKLALRP 136 (501)
T ss_dssp CSSTTCCEECHHHHHHHHHHHHHHHHHHTT-TCEECCCCSEEEHHHHTTSHHHHHHTTTTCCEEEEETTEEEEEEEEECS
T ss_pred CCCCceEEECccHHHHHHHHHHHHHHHHHc-CCEEEecCcEecHHHHhcccCCcccCCcceEEEecCCCcccCCeeEEcc
Confidence 457999999999999999999999999999 9999999999999999875442 21 111 24567777
Q ss_pred HhhCCCcchhhhhcc
Q psy1231 132 IHSVPSAPLWINWTN 146 (151)
Q Consensus 132 ~~~~~~~~~~~~~~~ 146 (151)
...+|.++++.+|.+
T Consensus 137 t~e~~i~~~~~~~~~ 151 (501)
T 1nj1_A 137 TSETVMYPMFALWVR 151 (501)
T ss_dssp SSHHHHHHHHHHHCC
T ss_pred CCCHHHHHHHHhhhc
Confidence 777777777777743
No 27
>1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase, aminoacyl-tRNA SYN; 2.75A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A*
Probab=98.17 E-value=6.4e-07 Score=78.89 Aligned_cols=52 Identities=19% Similarity=0.268 Sum_probs=49.5
Q ss_pred cccCCCccccCChhhHHHHHHHHHHHHHHHH--HcCCccccCCccccHHhhhcc
Q psy1231 64 ILKTPKGTRDYGPDSTVVRNQVLDKIVKIFK--KHGAVTIDTPIFELKEVLTGK 115 (151)
Q Consensus 64 ~~~~pkGtrD~lP~e~~~~~~I~~~i~~~f~--~~Gy~~IeTPv~E~~evf~~~ 115 (151)
.++.++|++||+|..+.++++|++.|++.|. ++||.+|+||+|++.+++.++
T Consensus 24 i~~~~~G~~d~~P~G~~l~~~l~~~~r~~~~~~~~g~~ev~tP~l~~~~l~~~S 77 (505)
T 1ati_A 24 IYGGLQGVYDYGPLGVELKNNLKQAWWRRNVYERDDMEGLDASVLTHRLVLHYS 77 (505)
T ss_dssp GGTCCTTCEEECHHHHHHHHHHHHHHHHHHTTSCSSEEEEBCCSEEETTHHHHT
T ss_pred hcCCCCCcceeCccHHHHHHHHHHHHHHHHHHhhCCcEEEEccccCCHHHHHhc
Confidence 4678899999999999999999999999999 999999999999999999876
No 28
>4hvc_A Bifunctional glutamate/proline--tRNA ligase; ligase-ligase inhibitor complex; HET: ANP HFG; 2.00A {Homo sapiens}
Probab=98.15 E-value=1.6e-06 Score=76.87 Aligned_cols=54 Identities=17% Similarity=0.109 Sum_probs=50.1
Q ss_pred ccCCCccccCChhhHHHHHHHHHHHHHHHHHcCCccccCCccccHHhhhcccCC
Q psy1231 65 LKTPKGTRDYGPDSTVVRNQVLDKIVKIFKKHGAVTIDTPIFELKEVLTGKYGV 118 (151)
Q Consensus 65 ~~~pkGtrD~lP~e~~~~~~I~~~i~~~f~~~Gy~~IeTPv~E~~evf~~~~Ge 118 (151)
+..++|++||+|..+.+++.|++.+++.+.++||.+|.||+|++.++|.+.+|.
T Consensus 47 ~~~~~G~~~~lP~G~~i~~~L~~~~~~~~~~~Gy~ev~tP~l~~~~l~~k~sGh 100 (519)
T 4hvc_A 47 YHDISGCYILRPWAYAIWEAIKDFFDAEIKKLGVENCYFPMFVSQSALEKEKTH 100 (519)
T ss_dssp ECSSTTCEEECHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHTTSCCS
T ss_pred ecCCCCeEEECccHHHHHHHHHHHHHHHHHHcCCEEEeccccccHHHHhcccCC
Confidence 456899999999999999999999999999999999999999999999875554
No 29
>3ial_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, prors, cysrs, RS, translation, ATP-binding, nucleotide-binding; HET: PR8; 2.20A {Giardia lamblia atcc 50803}
Probab=98.13 E-value=1.5e-06 Score=77.22 Aligned_cols=52 Identities=17% Similarity=0.174 Sum_probs=48.4
Q ss_pred cCCCccccCChhhHHHHHHHHHHHHHHHHHcCCccccCCccccHHhhhcccC
Q psy1231 66 KTPKGTRDYGPDSTVVRNQVLDKIVKIFKKHGAVTIDTPIFELKEVLTGKYG 117 (151)
Q Consensus 66 ~~pkGtrD~lP~e~~~~~~I~~~i~~~f~~~Gy~~IeTPv~E~~evf~~~~G 117 (151)
+.++|++||+|..+.+++.|++.+++.|.++||++|.||+|++.++|.+..|
T Consensus 42 ~~~~G~~~~lP~G~~i~~~L~~~~~~~~~~~Gy~eV~tP~l~~~el~~k~sg 93 (518)
T 3ial_A 42 YPVKGCVVFRPYGFFMENAIMRLCEEEYAKVGISQILFPTVIPESFLKKESD 93 (518)
T ss_dssp SSSTTCCEECHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHTSSHH
T ss_pred CCCCCeEEECccHHHHHHHHHHHHHHHHHHcCCEEEEcccccCHHHHHhhcC
Confidence 5789999999999999999999999999999999999999999999965433
No 30
>3uh0_A Threonyl-tRNA synthetase, mitochondrial; threonine tRNA, threonyl ADE threonyl sulfamoyl adenylate; HET: TSB; 2.00A {Saccharomyces cerevisiae} PDB: 3ugt_A 3ugq_A* 4eo4_A*
Probab=98.13 E-value=1.6e-06 Score=75.52 Aligned_cols=51 Identities=18% Similarity=0.214 Sum_probs=47.9
Q ss_pred CCCccccCChhhHHHHHHHHHHHHHHH-HHcCCccccCCccccHHhhhcccCC
Q psy1231 67 TPKGTRDYGPDSTVVRNQVLDKIVKIF-KKHGAVTIDTPIFELKEVLTGKYGV 118 (151)
Q Consensus 67 ~pkGtrD~lP~e~~~~~~I~~~i~~~f-~~~Gy~~IeTPv~E~~evf~~~~Ge 118 (151)
..+|++||+|..+.+++.|++.+++.+ .++||.+|.||+|++.++|.++ |.
T Consensus 52 ~~~G~~~~lP~g~~l~~~l~~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~s-Gh 103 (460)
T 3uh0_A 52 LSPGSMFFLPNGAKIFNKLIEFMKLQQKFKFGFNEVVTPLIYKKTLWEKS-GH 103 (460)
T ss_dssp TSTTCCEECHHHHHHHHHHHHHHHHHHHHTSCCEECCCCSEEEHHHHHHH-TC
T ss_pred CCCCcEEECccHHHHHHHHHHHHHHHHHHhcCCEEEECCeeccHHHHHhc-CC
Confidence 489999999999999999999999999 9999999999999999999864 54
No 31
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A
Probab=98.08 E-value=6.9e-07 Score=78.55 Aligned_cols=47 Identities=40% Similarity=0.600 Sum_probs=43.4
Q ss_pred ccchHHHHHHHHHhhHHHHhhhcCCCChhhHHHHHHHHHHHHHhhch
Q psy1231 4 AAPMADIQESIKAQGDVVRKLKSSKAPKEQIDEEVKKLLELKNQLKI 50 (151)
Q Consensus 4 ~~~~~~l~~~i~~qg~~VR~LK~~ka~k~~I~~~V~kLl~LK~ql~~ 50 (151)
+.+...+..+|++||+.||.||+.++++.+|+++|++|++||.+|+.
T Consensus 6 ~~~~~~~~~~i~~qg~~vr~lk~~~a~k~~i~~~v~~Ll~lk~~~k~ 52 (477)
T 1r6t_A 6 PASLLELFNSIATQGELVRSLKAGNASKDEIDSAVKMLVSLKMSYKA 52 (477)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHhHHHHHhcccccccchhhHHHHHHHHHHHHHHHH
Confidence 45567889999999999999999999999999999999999999986
No 32
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=97.97 E-value=1.8e-06 Score=74.63 Aligned_cols=74 Identities=15% Similarity=0.203 Sum_probs=57.2
Q ss_pred CccccCChhhHHHHHHHHHHHHHHHHHcCCccccCCccccHHhhhcccCCccccc--------chhhhhhHHhhCCCcch
Q psy1231 69 KGTRDYGPDSTVVRNQVLDKIVKIFKKHGAVTIDTPIFELKEVLTGKYGVYWTGY--------STAVGFLMIHSVPSAPL 140 (151)
Q Consensus 69 kGtrD~lP~e~~~~~~I~~~i~~~f~~~Gy~~IeTPv~E~~evf~~~~Ge~~~~~--------~~~~~~~~~~~~~~~~~ 140 (151)
+|++|++|..+.+++.|.+.+.+.|.++||.+|.||+|++.++|.++ |.- .++ +..++++-...+|.++.
T Consensus 162 ~G~~~~~p~ga~l~~~L~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~s-G~~-~~f~~emy~~~~~~l~LrPt~e~~i~~~ 239 (425)
T 2dq3_A 162 SRFTVIAGWGARLERALINFMLDLHTKKGYKEICPPHLVKPEILIGT-GQL-PKFEEDLYKCERDNLYLIPTAEVPLTNL 239 (425)
T ss_dssp SSCCEEETHHHHHHHHHHHHHHHHHHHTTCEEEECCSEECHHHHHHH-SCT-TTTGGGSCBCTTTCCEECSSTHHHHHGG
T ss_pred CCceEECcHHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHHhc-CCC-CcChhhheEecCCeEEEcCCCcHHHHHH
Confidence 89999999999999999999999999999999999999999999774 531 111 22344444455555555
Q ss_pred hhhh
Q psy1231 141 WINW 144 (151)
Q Consensus 141 ~~~~ 144 (151)
+.+|
T Consensus 240 ~~~~ 243 (425)
T 2dq3_A 240 YREE 243 (425)
T ss_dssp GTTE
T ss_pred HHhh
Confidence 5554
No 33
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=97.63 E-value=3.2e-05 Score=66.76 Aligned_cols=49 Identities=12% Similarity=0.250 Sum_probs=46.7
Q ss_pred CccccCChhhHHHHHHHHHHHHHHHHHcCCccccCCccccHHhhhcccCC
Q psy1231 69 KGTRDYGPDSTVVRNQVLDKIVKIFKKHGAVTIDTPIFELKEVLTGKYGV 118 (151)
Q Consensus 69 kGtrD~lP~e~~~~~~I~~~i~~~f~~~Gy~~IeTPv~E~~evf~~~~Ge 118 (151)
.|++||+|..+.+++.|.+.+.+.+.++||.+|.||+|++.+++.++ |.
T Consensus 156 ~G~~~~~p~ga~l~~aL~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~s-G~ 204 (421)
T 1ses_A 156 SRSYALKGDLALYELALLRFAMDFMARRGFLPMTLPSYAREKAFLGT-GH 204 (421)
T ss_dssp SSCCCEETHHHHHHHHHHHHHHHHHHHTTCEEEECCSEEEHHHHHHH-TC
T ss_pred CCeEEECcHHHHHHHHHHHHHHHHHHHcCCEEEeCCceecHHHHHhc-CC
Confidence 79999999999999999999999999999999999999999999875 64
No 34
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=97.52 E-value=5.8e-05 Score=65.84 Aligned_cols=49 Identities=8% Similarity=0.024 Sum_probs=46.8
Q ss_pred CccccCChhhHHHHHHHHHHHHHHHHHcCCccccCCccccHHhhhcccCC
Q psy1231 69 KGTRDYGPDSTVVRNQVLDKIVKIFKKHGAVTIDTPIFELKEVLTGKYGV 118 (151)
Q Consensus 69 kGtrD~lP~e~~~~~~I~~~i~~~f~~~Gy~~IeTPv~E~~evf~~~~Ge 118 (151)
.|+++++|..+.+++.|.+.+.+.+.++||.+|.||+|+..+++.+. |.
T Consensus 183 ~G~~~~~p~ga~l~~aL~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~s-G~ 231 (455)
T 2dq0_A 183 SRFYYLLNEIVILDLALIRFALDRLIEKGFTPVIPPYMVRRFVEEGS-TS 231 (455)
T ss_dssp TTCCEEEHHHHHHHHHHHHHHHHHHHHTTCEEEECCSEECHHHHHTT-SC
T ss_pred CCeEEECCHHHHHHHHHHHHHHHHHHHcCCEEEeCCcccCHHHHHhc-CC
Confidence 69999999999999999999999999999999999999999999886 65
No 35
>2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A {Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A
Probab=97.32 E-value=0.00011 Score=65.22 Aligned_cols=49 Identities=16% Similarity=0.201 Sum_probs=46.4
Q ss_pred CCCccccCChhhHHHHHHHHHHHHH-HHHHcCCccccCCccccHHhhhcc
Q psy1231 67 TPKGTRDYGPDSTVVRNQVLDKIVK-IFKKHGAVTIDTPIFELKEVLTGK 115 (151)
Q Consensus 67 ~pkGtrD~lP~e~~~~~~I~~~i~~-~f~~~Gy~~IeTPv~E~~evf~~~ 115 (151)
.++|++||+|..+.+++.|.+.+.+ ++.++||.+|.||+|.+.+++.++
T Consensus 219 ~~~G~y~~~P~G~~L~~~L~~~~~~e~~~~~G~~EV~tP~L~~~el~~~S 268 (522)
T 2cja_A 219 SSRGQWIHGPQSARIFRTFEKIVLEELLEPLGYREMIFPKLVTWEVWMKS 268 (522)
T ss_dssp SSTTCEEECHHHHHHHHHHHHHHHHHTHHHHTCEECBCCSEEEHHHHHHH
T ss_pred CCCCeEEECchHHHHHHHHHHHHHHHHHHHcCCEEEECCCcccHHHHhhc
Confidence 7899999999999999999999996 589999999999999999999874
No 36
>1usy_A ATP phosphoribosyltransferase regulatory subunit; aminoacyl-tRNA synthetase; HET: HIS; 2.52A {Thermotoga maritima} SCOP: d.104.1.1 PDB: 1usy_C*
Probab=97.25 E-value=5.2e-05 Score=61.60 Aligned_cols=53 Identities=11% Similarity=0.029 Sum_probs=40.6
Q ss_pred HHHHHHHH--HHHHHcCCccccCCccccHHhhhcccCCccccc-chhhhhhHHhhCCCc
Q psy1231 83 NQVLDKIV--KIFKKHGAVTIDTPIFELKEVLTGKYGVYWTGY-STAVGFLMIHSVPSA 138 (151)
Q Consensus 83 ~~I~~~i~--~~f~~~Gy~~IeTPv~E~~evf~~~~Ge~~~~~-~~~~~~~~~~~~~~~ 138 (151)
++|++.++ ++|++|||++|+||+||+.++|.+ +...|. .+.++++.+.+.|-+
T Consensus 4 ~~le~~~r~~~~~~~~Gy~eI~tP~le~~~l~~~---d~f~d~~g~~l~LRpd~T~~~a 59 (275)
T 1usy_A 4 LDFEKVFSFYSKATKKGFSPFFVPALEKAEEPAG---NFFLDRKGNLFSIREDFTKTVL 59 (275)
T ss_dssp CCHHHHHHHHHHHHHTTCEECCCCSEEECSSCCS---SCEEETTSCEEEECCCHHHHHH
T ss_pred HhHHHHHHHHHHHHHCCCEEecCccccchhhhcc---cccCCCCCCEEEeCCcChHHHH
Confidence 34666666 999999999999999999999976 222222 456788888887776
No 37
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A*
Probab=97.07 E-value=0.00037 Score=57.25 Aligned_cols=45 Identities=16% Similarity=0.117 Sum_probs=41.3
Q ss_pred ChhhHHHHHHHHHHHHHHHHHcCCccccCCccccH-Hhhhcc-cCCc
Q psy1231 75 GPDSTVVRNQVLDKIVKIFKKHGAVTIDTPIFELK-EVLTGK-YGVY 119 (151)
Q Consensus 75 lP~e~~~~~~I~~~i~~~f~~~Gy~~IeTPv~E~~-evf~~~-~Ge~ 119 (151)
....+.+|.+|.+.++++|..+||.+|+||+||.. |+|.++ .|+.
T Consensus 11 ~~~~~~~rs~i~~~ir~~f~~~GF~EVeTP~l~~~~~~~~~~~~~e~ 57 (294)
T 1nnh_A 11 ISPTLDIQTKILEYMTDFFVKEGFKWLLPVIISPITDPLWPDPAGEG 57 (294)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCEEECCCCEESCCCCCCSCTTCCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHCCCEEEECCEEEEccchhccCCCCCc
Confidence 56788999999999999999999999999999999 999888 6665
No 38
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=94.78 E-value=0.14 Score=44.95 Aligned_cols=46 Identities=13% Similarity=0.205 Sum_probs=42.4
Q ss_pred ccccCChhhHHHHHHHHHHHHHHHHHcCCccccCCccccHHhhhcc
Q psy1231 70 GTRDYGPDSTVVRNQVLDKIVKIFKKHGAVTIDTPIFELKEVLTGK 115 (151)
Q Consensus 70 GtrD~lP~e~~~~~~I~~~i~~~f~~~Gy~~IeTPv~E~~evf~~~ 115 (151)
|+.-|.|..+.+++.|.+.+.+....+||.+|.||.|-..+++.+.
T Consensus 176 g~~~l~p~GarL~~aL~~~~~d~~~~~Gy~eV~~P~lv~~~l~~~s 221 (485)
T 3qne_A 176 RGYFLRNYGVFLNQALINYGLSFLSSKGYVPLQAPVMMNKEVMAKT 221 (485)
T ss_dssp TCCEECTHHHHHHHHHHHHHHHHHHTTTCEEEECCSEEEHHHHHHH
T ss_pred eeEEEecHHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHhhc
Confidence 6777789999999999999999999999999999999999998754
No 39
>3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase, ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A 2zni_A
Probab=94.58 E-value=0.023 Score=46.41 Aligned_cols=34 Identities=24% Similarity=0.315 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHcCCccccCCccccHHhhhcc
Q psy1231 82 RNQVLDKIVKIFKKHGAVTIDTPIFELKEVLTGK 115 (151)
Q Consensus 82 ~~~I~~~i~~~f~~~Gy~~IeTPv~E~~evf~~~ 115 (151)
++.+++.++++|..+||.+|.||.||..+++...
T Consensus 73 ~~~l~~~ir~~~~~~Gf~EV~tP~Le~~~l~~~~ 106 (288)
T 3dsq_A 73 LLELEEKLAKALHQQGFVQVVTPTIITKSALAKM 106 (288)
T ss_dssp HHHHHHHHHHHHHTTTCEECCCCSEEEHHHHHTT
T ss_pred HHHHHHHHHHHHHHCCCEEEECCeeecHHHHhhc
Confidence 5889999999999999999999999999998763
No 40
>1g5h_A Mitochondrial DNA polymerase accessory subunit; intermolecular four helix bundle, DNA binding protein; 1.95A {Mus musculus} SCOP: c.51.1.1 d.104.1.1 PDB: 1g5i_A 2g4c_A* 3ikm_B*
Probab=94.56 E-value=0.011 Score=51.25 Aligned_cols=49 Identities=12% Similarity=0.135 Sum_probs=42.3
Q ss_pred cCCCccc-cCChhhHHHHHHHHHHHHHH-H-HHcCCccccCCccccHHhhhc
Q psy1231 66 KTPKGTR-DYGPDSTVVRNQVLDKIVKI-F-KKHGAVTIDTPIFELKEVLTG 114 (151)
Q Consensus 66 ~~pkGtr-D~lP~e~~~~~~I~~~i~~~-f-~~~Gy~~IeTPv~E~~evf~~ 114 (151)
..++|+. ||+|..+.++++|.+.|.+. | .+.||.+|+||++-+.+++..
T Consensus 48 ~~~~G~~~~~~P~G~~l~~~i~~~~~~~~~~~~~g~~ev~tp~l~~~~~~~~ 99 (454)
T 1g5h_A 48 ALLSGCHARFGPLGVELRKNLASQWWSSMVVFREQVFAVDSLHQEPGSSQPR 99 (454)
T ss_dssp HHHHCCSCCBCHHHHHHHHHHHHHHHHHHTTTCTTEEECCCCSEECCCCSSC
T ss_pred CCCCcceeeeCchHHHHHHHHHHHHHHHHhhhcCCeEEEEcCccCChhhccc
Confidence 3456877 99999999999999988877 5 589999999999988887765
No 41
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A*
Probab=93.94 E-value=0.036 Score=47.74 Aligned_cols=34 Identities=12% Similarity=0.110 Sum_probs=26.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHcCCccccCCccccH
Q psy1231 76 PDSTVVRNQVLDKIVKIFKKHGAVTIDTPIFELK 109 (151)
Q Consensus 76 P~e~~~~~~I~~~i~~~f~~~Gy~~IeTPv~E~~ 109 (151)
..-+.+|..|.+.+++.|..+||.+|+||+++..
T Consensus 122 ~~~~~~rs~i~~~ir~~f~~~gF~EV~TPil~~~ 155 (422)
T 1n9w_A 122 RAPLKVQAALVRGFRRYLDRQDFTEIFTPKVVRA 155 (422)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEECCCC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEEECCEEEEe
Confidence 4566788999999999999999999999999976
No 42
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A {Homo sapiens}
Probab=93.93 E-value=0.036 Score=49.24 Aligned_cols=47 Identities=17% Similarity=0.201 Sum_probs=44.0
Q ss_pred CccccCChhhHHHHHHHHHHHHHHHHHcCCccccCCccccHHhhhcc
Q psy1231 69 KGTRDYGPDSTVVRNQVLDKIVKIFKKHGAVTIDTPIFELKEVLTGK 115 (151)
Q Consensus 69 kGtrD~lP~e~~~~~~I~~~i~~~f~~~Gy~~IeTPv~E~~evf~~~ 115 (151)
.|+.-|.|..+.+++.|++.+++....+||.+|.||.|-..+++.+.
T Consensus 191 sgfy~l~p~GarL~raL~~f~~d~~~~~Gy~EV~~P~lv~~el~~~s 237 (522)
T 3vbb_A 191 SRGYFLKGVLVFLEQALIQYALRTLGSRGYIPIYTPFFMRKEVMQEV 237 (522)
T ss_dssp TTCCEEETHHHHHHHHHHHHHHHHHHHTTCEEEECCSEEEHHHHHHH
T ss_pred cceEEEcCHHHHHHHHHHHHHHHHHHHcCCEEEECCcccchHHHhhc
Confidence 58888999999999999999999999999999999999999999753
No 43
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=93.73 E-value=0.041 Score=48.50 Aligned_cols=47 Identities=9% Similarity=0.124 Sum_probs=43.1
Q ss_pred CccccCChhhHHHHHHHHHHHHHHHHHcCCccccCCccccHHhhhcc
Q psy1231 69 KGTRDYGPDSTVVRNQVLDKIVKIFKKHGAVTIDTPIFELKEVLTGK 115 (151)
Q Consensus 69 kGtrD~lP~e~~~~~~I~~~i~~~f~~~Gy~~IeTPv~E~~evf~~~ 115 (151)
.|+.-+.|..+.+++.|.+.+.+.+..+||.+|.||.|-..+++.+.
T Consensus 209 ~g~~~l~p~GarL~~aL~~~~~d~~~~~Gy~eV~~P~lv~~~l~~~s 255 (501)
T 1wle_A 209 HRSYYLRGAGALLQHGLVNFTLNKLIHRGFTPMTVPDLLRGVVFEGC 255 (501)
T ss_dssp TTCCEEETHHHHHHHHHHHHHHHHHHHTTCEEEECCSEECHHHHHHH
T ss_pred CceEEEcChHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHHhh
Confidence 56666799999999999999999999999999999999999998764
No 44
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A
Probab=93.58 E-value=0.049 Score=46.99 Aligned_cols=33 Identities=15% Similarity=0.131 Sum_probs=29.4
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCccccCCccccH
Q psy1231 77 DSTVVRNQVLDKIVKIFKKHGAVTIDTPIFELK 109 (151)
Q Consensus 77 ~e~~~~~~I~~~i~~~f~~~Gy~~IeTPv~E~~ 109 (151)
..+..+..|.+.+++.|..+||.+|+||+++..
T Consensus 133 ~~~~~rs~i~~~ir~~f~~~gF~eVeTP~l~~~ 165 (434)
T 1x54_A 133 AIMKVKETLIMAAREWLLKDGWHEVFPPILVTG 165 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECCCCSEESC
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEeCcEEEee
Confidence 455678899999999999999999999999965
No 45
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii}
Probab=93.48 E-value=0.048 Score=47.01 Aligned_cols=33 Identities=18% Similarity=0.200 Sum_probs=29.3
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCccccCCccccH
Q psy1231 77 DSTVVRNQVLDKIVKIFKKHGAVTIDTPIFELK 109 (151)
Q Consensus 77 ~e~~~~~~I~~~i~~~f~~~Gy~~IeTPv~E~~ 109 (151)
.-+..+..|.+.+++.|..+||.+|+||+++..
T Consensus 132 ~~~~~rs~i~~~ir~ff~~~gF~eV~TP~l~~~ 164 (429)
T 1wyd_A 132 AVIKIQSLALKAFRETLYKEGFIEIFTPKIIAS 164 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECCCCSEESS
T ss_pred HHHHHHHHHHHHHHHHHhhCCCEEEECCEEEee
Confidence 345678899999999999999999999999965
No 46
>3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B O-methyl tyrosine binding, magnesium binding, aminoacylatio esterification; HET: 0A1 ANP; 1.75A {Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* 3vqv_A* 3vqw_A* 3vqx_A* 3vqy_A*
Probab=93.45 E-value=0.047 Score=44.19 Aligned_cols=33 Identities=21% Similarity=0.369 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHcCCccccCCccccHHhhhc
Q psy1231 82 RNQVLDKIVKIFKKHGAVTIDTPIFELKEVLTG 114 (151)
Q Consensus 82 ~~~I~~~i~~~f~~~Gy~~IeTPv~E~~evf~~ 114 (151)
++.+.+.+++.|..+||.+|.||+|+..+.+..
T Consensus 79 ~~~i~~~ir~~l~~~Gf~EV~Tp~l~~~~~~~~ 111 (290)
T 3qtc_A 79 LGKLEREITRFFVDRGFLEIKSPILIPLEYIER 111 (290)
T ss_dssp HHHHHHHHHHHHHHTTCEEECCCSEEETHHHHH
T ss_pred HHHHHHHHHHHHHHCCCEEEECCceeeHHHHHh
Confidence 688999999999999999999999999998754
No 47
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A*
Probab=93.27 E-value=0.054 Score=47.43 Aligned_cols=34 Identities=9% Similarity=0.034 Sum_probs=30.0
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCccccCCccccHH
Q psy1231 77 DSTVVRNQVLDKIVKIFKKHGAVTIDTPIFELKE 110 (151)
Q Consensus 77 ~e~~~~~~I~~~i~~~f~~~Gy~~IeTPv~E~~e 110 (151)
.-+.+|..|.+.+++.|..+||.+|+||+|+..+
T Consensus 176 ~~~~~rs~i~~~ir~~~~~~gF~EV~TPil~~~~ 209 (487)
T 1eov_A 176 AIFRIQAGVCELFREYLATKKFTEVHTPKLLGAP 209 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSC
T ss_pred HHHHHHHHHHHHHHHHHHhCCcEEEeCCEEEEec
Confidence 3456789999999999999999999999999853
No 48
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A*
Probab=92.43 E-value=0.082 Score=46.39 Aligned_cols=33 Identities=15% Similarity=0.491 Sum_probs=28.9
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCccccCCccccH
Q psy1231 77 DSTVVRNQVLDKIVKIFKKHGAVTIDTPIFELK 109 (151)
Q Consensus 77 ~e~~~~~~I~~~i~~~f~~~Gy~~IeTPv~E~~ 109 (151)
.-+.+|..|...+++.|..+||.+|+||+|+..
T Consensus 172 ~~~r~Rs~i~~~iR~ff~~~gF~EVeTPiL~~~ 204 (493)
T 3a74_A 172 KTFITRSLIIQSMRRYLDSHGYLEVETPMMHAV 204 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECCCCSEESS
T ss_pred HHHHHHHHHHHHHHHHHHhCCeEEEECCeEEec
Confidence 445678889999999999999999999999864
No 49
>3ikl_A DNA polymerase subunit gamma-2, mitochondrial; transferase; HET: DNA; 3.10A {Homo sapiens}
Probab=92.40 E-value=0.087 Score=46.04 Aligned_cols=43 Identities=12% Similarity=0.158 Sum_probs=35.8
Q ss_pred cCCCccc-cCChhhHHHHHHHHHHHHHHHHH-cC-CccccCCcccc
Q psy1231 66 KTPKGTR-DYGPDSTVVRNQVLDKIVKIFKK-HG-AVTIDTPIFEL 108 (151)
Q Consensus 66 ~~pkGtr-D~lP~e~~~~~~I~~~i~~~f~~-~G-y~~IeTPv~E~ 108 (151)
..+.|.. ||+|..|.+++.|++.|.+.|.. .| |.+|+||+.+.
T Consensus 90 ~~~~g~~p~~gP~G~~l~~nl~~~w~~~~~~~~~~~~eV~tp~~~~ 135 (459)
T 3ikl_A 90 SLLSGCHPGFGPLGVELRKNLAAEWWTSVVVFREQVFPVDALHHKP 135 (459)
T ss_dssp HHHTTCSCCBCHHHHHHHHHHHHHHHHHHTTSSCSCEECCCCSBCC
T ss_pred CCccccccccCCcHHHHHHHHHHHHHHHHhhccCceEeeccccccc
Confidence 5567888 99999999999999988888875 55 67799999443
No 50
>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A*
Probab=91.72 E-value=0.12 Score=43.33 Aligned_cols=35 Identities=17% Similarity=0.422 Sum_probs=31.3
Q ss_pred ChhhHHHHHHHHHHHHHHHHHcCCccccCCccccH
Q psy1231 75 GPDSTVVRNQVLDKIVKIFKKHGAVTIDTPIFELK 109 (151)
Q Consensus 75 lP~e~~~~~~I~~~i~~~f~~~Gy~~IeTPv~E~~ 109 (151)
.-.-..+|..|...+++.|...||.+|+||++...
T Consensus 32 ~~~~lr~Rs~i~~~iR~ff~~~gF~EVeTPiL~~~ 66 (345)
T 3a5y_A 32 SIPNLLKRAAIMAEIRRFFADRGVLEVETPCMSQA 66 (345)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESS
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEEECCEEEec
Confidence 44677899999999999999999999999999754
No 51
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A
Probab=91.10 E-value=0.16 Score=45.06 Aligned_cols=49 Identities=12% Similarity=0.250 Sum_probs=44.7
Q ss_pred CccccCChhhHHHHHHHHHHHHHHHHHcCCccccCCccccHHhhhcccCC
Q psy1231 69 KGTRDYGPDSTVVRNQVLDKIVKIFKKHGAVTIDTPIFELKEVLTGKYGV 118 (151)
Q Consensus 69 kGtrD~lP~e~~~~~~I~~~i~~~f~~~Gy~~IeTPv~E~~evf~~~~Ge 118 (151)
.|+.-|.|..+.+.+.|.+.+++.+.++||.+|.||.|=..+++.+. |.
T Consensus 265 ~g~~~~~p~Ga~l~~aL~~~~~~~~~~~Gy~ev~~P~lv~~~l~~~s-G~ 313 (536)
T 3err_A 265 SRSYALKGDLALYELALLRFAMDFMARRGFLPMTLPSYAREKAFLGT-GH 313 (536)
T ss_dssp SSCCCEEHHHHHHHHHHHHHHHHHHHHTTCEEEECCSEEEHHHHHHH-TC
T ss_pred CceeEEcCHHHHHHHHHHHHHHHHHHHcCCEEEeccccccHHHHHhc-CC
Confidence 47889999999999999999999999999999999999999999753 44
No 52
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A
Probab=90.38 E-value=0.17 Score=44.60 Aligned_cols=32 Identities=25% Similarity=0.536 Sum_probs=27.8
Q ss_pred hHHHHHHHHHHHHHHHHHcCCccccCCccccH
Q psy1231 78 STVVRNQVLDKIVKIFKKHGAVTIDTPIFELK 109 (151)
Q Consensus 78 e~~~~~~I~~~i~~~f~~~Gy~~IeTPv~E~~ 109 (151)
-+.+|..|...+++.|..+||.+|+||++...
T Consensus 182 ~~r~Rs~i~~~iR~f~~~~gFlEVeTPiL~~~ 213 (504)
T 1e1o_A 182 TFVVRSKILAAIRQFMVARGFMEVETPMMQVI 213 (504)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCEECCCCSEESS
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCeEEec
Confidence 44567889999999999999999999999854
No 53
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A*
Probab=89.90 E-value=0.22 Score=42.92 Aligned_cols=35 Identities=14% Similarity=0.202 Sum_probs=30.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHcCCccccCCccccHH
Q psy1231 76 PDSTVVRNQVLDKIVKIFKKHGAVTIDTPIFELKE 110 (151)
Q Consensus 76 P~e~~~~~~I~~~i~~~f~~~Gy~~IeTPv~E~~e 110 (151)
..-..+|..|...+++.|..+||.+|+||++....
T Consensus 129 ~~~~r~Rs~i~~~iR~ff~~~gFlEVeTPiL~~s~ 163 (435)
T 2xgt_A 129 AALLRLRAAATRAMREHFYNAGYVEVAPPTLVQTQ 163 (435)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESCC
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEEECCeEeecc
Confidence 34567789999999999999999999999997653
No 54
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=89.64 E-value=0.22 Score=43.78 Aligned_cols=47 Identities=11% Similarity=0.127 Sum_probs=42.5
Q ss_pred CccccCChhhHHHHHHHHHHHHHHHHHcCCccccCCccccHHhhhcc
Q psy1231 69 KGTRDYGPDSTVVRNQVLDKIVKIFKKHGAVTIDTPIFELKEVLTGK 115 (151)
Q Consensus 69 kGtrD~lP~e~~~~~~I~~~i~~~f~~~Gy~~IeTPv~E~~evf~~~ 115 (151)
.|+.-|.|..+.+.+.|.+.+++....+||.+|.||.|-..+++.+.
T Consensus 198 sgf~~~~p~GarL~~aL~~f~~d~~~~~Gy~eV~~P~lv~~~l~~~s 244 (484)
T 3lss_A 198 GRSYVLKGGLVQLQVALVSYSLDFLVKRGYTPFYPPFFLNRDVMGEV 244 (484)
T ss_dssp TTCCEEEHHHHHHHHHHHHHHHHHHHTTTCEEEECCSEEEHHHHHHH
T ss_pred ceEEEECCHHHHHHHHHHHHHHHHHHHcCCEEEecCccccHHHHHhc
Confidence 45677789999999999999999999999999999999999998754
No 55
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A*
Probab=88.15 E-value=0.34 Score=41.86 Aligned_cols=33 Identities=21% Similarity=0.387 Sum_probs=28.7
Q ss_pred hHHHHHHHHHHHHHHHHHcCCccccCCccccHH
Q psy1231 78 STVVRNQVLDKIVKIFKKHGAVTIDTPIFELKE 110 (151)
Q Consensus 78 e~~~~~~I~~~i~~~f~~~Gy~~IeTPv~E~~e 110 (151)
-..+|..|...+++.|...||.+|+||++....
T Consensus 136 ~~~~Rs~i~~~iR~f~~~~gF~EVeTPiL~~~~ 168 (438)
T 3nem_A 136 IFKIRSSVFKAVRDFFHENGFIEIHTPKIIATA 168 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEESSC
T ss_pred HHHHHHHHHHHHHHHHHHCCcEEEeCCEEecCC
Confidence 445678999999999999999999999997653
No 56
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A
Probab=87.83 E-value=0.36 Score=41.88 Aligned_cols=33 Identities=12% Similarity=0.158 Sum_probs=27.6
Q ss_pred hHHHHHHHHHHHHHHHHHcCCccccCCccccHH
Q psy1231 78 STVVRNQVLDKIVKIFKKHGAVTIDTPIFELKE 110 (151)
Q Consensus 78 e~~~~~~I~~~i~~~f~~~Gy~~IeTPv~E~~e 110 (151)
-..+|..|...+++.|...||.+|+||++-...
T Consensus 155 ~lr~Rs~i~~~iR~ff~~~gF~EVeTPiL~~s~ 187 (456)
T 3m4p_A 155 VLQLRSEIQWYFRKYYHDNHFTEIQPPTIVKTQ 187 (456)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEEC--
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEeCCeeecCC
Confidence 356788999999999999999999999996543
No 57
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A*
Probab=86.74 E-value=0.46 Score=42.44 Aligned_cols=30 Identities=20% Similarity=0.464 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHcCCccccCCcccc
Q psy1231 79 TVVRNQVLDKIVKIFKKHGAVTIDTPIFEL 108 (151)
Q Consensus 79 ~~~~~~I~~~i~~~f~~~Gy~~IeTPv~E~ 108 (151)
..+|..|...+++.|...||.+|+||++-.
T Consensus 138 l~~Rs~i~~~iR~fl~~~gFlEVeTPiL~~ 167 (585)
T 1c0a_A 138 LKTRAKITSLVRRFMDDHGFLDIETPMLTK 167 (585)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEECCCCSSBC
T ss_pred HHHHHHHHHHHHHHHHhCCcEEEeCCEEec
Confidence 445688889999999999999999999863
No 58
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A
Probab=86.42 E-value=0.49 Score=42.27 Aligned_cols=30 Identities=23% Similarity=0.502 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHcCCccccCCcccc
Q psy1231 79 TVVRNQVLDKIVKIFKKHGAVTIDTPIFEL 108 (151)
Q Consensus 79 ~~~~~~I~~~i~~~f~~~Gy~~IeTPv~E~ 108 (151)
..+|..|...+++.|...||.+|+||++-.
T Consensus 144 l~~Rs~i~~~iR~fl~~~gF~EVeTPiL~~ 173 (580)
T 1l0w_A 144 LRLRHRVIKAIWDFLDREGFVQVETPFLTK 173 (580)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEECCCCSSBC
T ss_pred HHHHHHHHHHHHHHHHhCCcEEEeCCEEec
Confidence 456788899999999999999999999863
No 59
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens}
Probab=86.11 E-value=0.51 Score=41.64 Aligned_cols=31 Identities=19% Similarity=0.544 Sum_probs=27.0
Q ss_pred hHHHHHHHHHHHHHHHHHcCCccccCCcccc
Q psy1231 78 STVVRNQVLDKIVKIFKKHGAVTIDTPIFEL 108 (151)
Q Consensus 78 e~~~~~~I~~~i~~~f~~~Gy~~IeTPv~E~ 108 (151)
-..+|..|...+++.|...||.+|+||++-.
T Consensus 175 ~~r~Rs~i~~~iR~f~~~~gF~EVeTPiL~~ 205 (521)
T 3bju_A 175 KFIIRSKIITYIRSFLDELGFLEIETPMMNI 205 (521)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEES
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEeCceeec
Confidence 4456788899999999999999999999964
No 60
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis}
Probab=86.09 E-value=0.51 Score=41.86 Aligned_cols=31 Identities=16% Similarity=0.335 Sum_probs=27.2
Q ss_pred hHHHHHHHHHHHHHHHHHcCCccccCCcccc
Q psy1231 78 STVVRNQVLDKIVKIFKKHGAVTIDTPIFEL 108 (151)
Q Consensus 78 e~~~~~~I~~~i~~~f~~~Gy~~IeTPv~E~ 108 (151)
-..+|..|...+++.|...||.+|+||++-.
T Consensus 203 ~fr~Rs~i~~~iR~ff~~~gFlEVeTPiL~~ 233 (529)
T 4ex5_A 203 TFRARTKAIASIRKFMGDADFMEVETPMLHP 233 (529)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEES
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEeCCeeec
Confidence 4466788999999999999999999999963
No 61
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica}
Probab=84.69 E-value=0.68 Score=41.25 Aligned_cols=33 Identities=12% Similarity=0.048 Sum_probs=27.6
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCccccCCccccH
Q psy1231 77 DSTVVRNQVLDKIVKIFKKHGAVTIDTPIFELK 109 (151)
Q Consensus 77 ~e~~~~~~I~~~i~~~f~~~Gy~~IeTPv~E~~ 109 (151)
.-..+|..|...+++.|...||.+|+||++-..
T Consensus 242 ~~~r~Rs~i~~~iR~ff~~~gF~EVeTPiL~~~ 274 (548)
T 3i7f_A 242 AIFRIQSACCGLFREFLTSQKFVEIHTPKLIGC 274 (548)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECCCCSBC--
T ss_pred HHHHHHHHHHHHHHHHHHhCCCEEEeCCEEecc
Confidence 345678899999999999999999999999665
No 62
>1b7y_A Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: d.104.1.1 PDB: 1b70_A* 1eiy_A 1jjc_A* 1pys_A 2iy5_A* 3hfz_A* 3teh_A* 2aly_A* 2akw_A* 2amc_A*
Probab=78.96 E-value=1 Score=37.78 Aligned_cols=30 Identities=20% Similarity=0.282 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHcCCccccCCccccHH
Q psy1231 81 VRNQVLDKIVKIFKKHGAVTIDTPIFELKE 110 (151)
Q Consensus 81 ~~~~I~~~i~~~f~~~Gy~~IeTPv~E~~e 110 (151)
-...+.+.++++|...||.++++|.++...
T Consensus 102 p~~~~~~~Ir~~f~~~Gf~Ev~~p~v~~~~ 131 (350)
T 1b7y_A 102 PITLMERELVEIFRALGYQAVEGPEVESEF 131 (350)
T ss_dssp HHHHHHHHHHHHHHTTTCEECCCCSEEEHH
T ss_pred HHHHHHHHHHHHHHHCCCEEEECcchhcch
Confidence 367888999999999999999999998753
No 63
>3pco_A Phenylalanyl-tRNA synthetase, alpha subunit; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli}
Probab=78.38 E-value=1.9 Score=35.86 Aligned_cols=45 Identities=18% Similarity=0.228 Sum_probs=30.9
Q ss_pred cccccCCCccccCChhhHHHHHHHHHHHHHHHHHcCCccccCCcccc
Q psy1231 62 KFILKTPKGTRDYGPDSTVVRNQVLDKIVKIFKKHGAVTIDTPIFEL 108 (151)
Q Consensus 62 ~~~~~~pkGtrD~lP~e~~~~~~I~~~i~~~f~~~Gy~~IeTPv~E~ 108 (151)
++...+|.+-.... ...-.+.+.+.++++|...||.++++|.+|.
T Consensus 91 ~id~TLP~~~~~~G--~~hp~~~~~~~Ir~if~~~Gf~ev~~~~ve~ 135 (327)
T 3pco_A 91 TIDVSLPGRRIENG--GLHPVTRTIDRIESFFGELGFTVATGPEIED 135 (327)
T ss_dssp CCCTTSCCCCCCCC--CCCHHHHHHHHHHHHHHTTTCBCCCCCSEEC
T ss_pred CCCCcCCCCCCCCC--CCCHHHHHHHHHHHHHHHCCCeEEECCCccC
Confidence 44445554422222 2234677889999999999999999998864
No 64
>4ah6_A Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo sapiens}
Probab=76.88 E-value=1.7 Score=39.25 Aligned_cols=30 Identities=30% Similarity=0.383 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHH-HcCCccccCCcccc
Q psy1231 79 TVVRNQVLDKIVKIFK-KHGAVTIDTPIFEL 108 (151)
Q Consensus 79 ~~~~~~I~~~i~~~f~-~~Gy~~IeTPv~E~ 108 (151)
..+|..|...+++.|. ..||.+|+||++-.
T Consensus 148 lr~Rs~i~~~iR~f~~~~~gF~EVeTPiL~~ 178 (617)
T 4ah6_A 148 LRLRSQMVMKMREYLCNLHGFVDIETPTLFK 178 (617)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCEECCCCSSBC
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEeCCeecc
Confidence 3457788899999996 69999999999954
No 65
>3mf2_A BLL0957 protein; aminoacyl-tRNA synthetase, seryl-tRNA synthetase, zinc ION, amino acid:[carrier protein] ligase; HET: AMP; 2.15A {Bradyrhizobium japonicum} PDB: 3mey_A* 3mf1_A* 3pzc_A*
Probab=51.03 E-value=4.8 Score=33.87 Aligned_cols=49 Identities=10% Similarity=0.093 Sum_probs=42.9
Q ss_pred cCCCccccCChhhHHHHHHHHHHHHHHHHHcCCccccCCccccHHhhhcc
Q psy1231 66 KTPKGTRDYGPDSTVVRNQVLDKIVKIFKKHGAVTIDTPIFELKEVLTGK 115 (151)
Q Consensus 66 ~~pkGtrD~lP~e~~~~~~I~~~i~~~f~~~Gy~~IeTPv~E~~evf~~~ 115 (151)
-.+.|++=+.+.-..+++.|.+.+++ -..+||++|.||.+=..+++.+.
T Consensus 51 ~g~~g~y~~~g~~a~L~~aLe~~~~~-~~~~Gy~ev~~P~lv~~~~~e~S 99 (346)
T 3mf2_A 51 MGSDGVYARTALYESIVERLAALITS-HREAGTEALRFPPVMSRAQLEKS 99 (346)
T ss_dssp EEETTEEEEEHHHHHHHHHHHHHHHH-TCCTTCEEEECCSEEEHHHHHHT
T ss_pred cCCCceEEecchHHHHHHHHHHHHHh-hHhcCCeEEECCCccCHHHHHhc
Confidence 34678888999999999999999999 77899999999999999988653
No 66
>2rhq_A Phenylalanyl-tRNA synthetase alpha chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_A*
Probab=47.15 E-value=13 Score=29.89 Aligned_cols=28 Identities=18% Similarity=0.218 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHcCCccccCCccccH
Q psy1231 82 RNQVLDKIVKIFKKHGAVTIDTPIFELK 109 (151)
Q Consensus 82 ~~~I~~~i~~~f~~~Gy~~IeTPv~E~~ 109 (151)
.+.+.+.+++.|...||.+|.+|.++..
T Consensus 55 ~~~~~~~iR~~l~~~Gf~Ev~~s~l~~~ 82 (294)
T 2rhq_A 55 LTRTVEEIEDLFLGLGYEIVDGYEVEQD 82 (294)
T ss_dssp HHHHHHHHHHHHHTTTCEECCCCSEEEH
T ss_pred HHHHHHHHHHHHHHCCCEEEcCcceeee
Confidence 5678889999999999999999999875
No 67
>2ras_A Transcriptional regulator, TETR family; bacterial regulatory proteins, DNA-binding, DNA binding 3-helical bundle fold; 1.80A {Novosphingobium aromaticivorans}
Probab=44.74 E-value=21 Score=25.32 Aligned_cols=29 Identities=14% Similarity=0.337 Sum_probs=24.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHcCCccccCC
Q psy1231 76 PDSTVVRNQVLDKIVKIFKKHGAVTIDTP 104 (151)
Q Consensus 76 P~e~~~~~~I~~~i~~~f~~~Gy~~IeTP 104 (151)
+.....++.|.+...++|..+||..+..-
T Consensus 7 ~~~~~~r~~Il~aA~~lf~~~G~~~~s~~ 35 (212)
T 2ras_A 7 TEHDAMRARLVDVAQAIVEERGGAGLTLS 35 (212)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSSCCCHH
T ss_pred ccchHHHHHHHHHHHHHHHHhCcccCcHH
Confidence 45567899999999999999999877543
No 68
>2fq4_A Transcriptional regulator, TETR family; DNA-binding protein, bacillu structural genomics, PSI, protein structure initiative; 1.79A {Bacillus cereus} SCOP: a.4.1.9 a.121.1.1
Probab=37.80 E-value=22 Score=24.99 Aligned_cols=26 Identities=8% Similarity=0.207 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHHHHHHHHcCCccccC
Q psy1231 78 STVVRNQVLDKIVKIFKKHGAVTIDT 103 (151)
Q Consensus 78 e~~~~~~I~~~i~~~f~~~Gy~~IeT 103 (151)
....++.|.+...++|..+||..+..
T Consensus 10 ~~~~r~~Il~aA~~lf~e~G~~~~t~ 35 (192)
T 2fq4_A 10 NIETQKAILSASYELLLESGFKAVTV 35 (192)
T ss_dssp CHHHHHHHHHHHHHHHHHHCTTTCCH
T ss_pred ChHHHHHHHHHHHHHHHHcCcccccH
Confidence 45679999999999999999987654
No 69
>2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase, structural genomics, NPPSFA; 3.60A {Methanocaldococcus jannaschii}
Probab=37.79 E-value=19 Score=32.01 Aligned_cols=31 Identities=6% Similarity=0.156 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHcCCccccCCccccHH
Q psy1231 80 VVRNQVLDKIVKIFKKHGAVTIDTPIFELKE 110 (151)
Q Consensus 80 ~~~~~I~~~i~~~f~~~Gy~~IeTPv~E~~e 110 (151)
.-...+.+.+++.|.+.||.++.+|++|...
T Consensus 57 HPl~~~~~~ir~~f~~mGF~e~~~p~ies~~ 87 (549)
T 2du7_A 57 HPVMETIERLRQAYLRMGFEEMINPVIVDEM 87 (549)
T ss_dssp CHHHHHHHHHHHHHHTTTCEECCCCSCEEHH
T ss_pred CHHHHHHHHHHHHHHHCCCEEeeCCeEeehH
Confidence 3457889999999999999999999997543
No 70
>2g7s_A Transcriptional regulator, TETR family; APC5906, PSI, protein structure initiat midwest center for structural genomics, MCSG; HET: MSE; 1.40A {Agrobacterium tumefaciens str} SCOP: a.4.1.9 a.121.1.1
Probab=37.71 E-value=23 Score=24.32 Aligned_cols=29 Identities=7% Similarity=0.127 Sum_probs=23.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHcCCccccCC
Q psy1231 76 PDSTVVRNQVLDKIVKIFKKHGAVTIDTP 104 (151)
Q Consensus 76 P~e~~~~~~I~~~i~~~f~~~Gy~~IeTP 104 (151)
|.....++.|.+...++|..+||..+..-
T Consensus 4 ~k~~~~r~~Il~aa~~l~~~~G~~~~ti~ 32 (194)
T 2g7s_A 4 KNPQSKADDILQCARTLIIRGGYNSFSYA 32 (194)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHCGGGCCHH
T ss_pred CchhhhHHHHHHHHHHHHHHcCcccCCHH
Confidence 34457899999999999999999987543
No 71
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=35.12 E-value=22 Score=32.37 Aligned_cols=29 Identities=10% Similarity=0.213 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHcCCccccCCccccH
Q psy1231 81 VRNQVLDKIVKIFKKHGAVTIDTPIFELK 109 (151)
Q Consensus 81 ~~~~I~~~i~~~f~~~Gy~~IeTPv~E~~ 109 (151)
-...+.+.+++.|...||.++.+|++|..
T Consensus 66 Pl~~~~~~IR~if~~mGF~E~~~p~vese 94 (648)
T 2odr_B 66 PVNDTIENLRQAYLRMGFEEYINPVIVDE 94 (648)
T ss_dssp HHHHHHHHHHHHHHHTTCEECCCCSEEEH
T ss_pred HHHHHHHHHHHHHHHCCCEEeeCCEEeeh
Confidence 35778899999999999999999999753
No 72
>2eh3_A Transcriptional regulator; all alpha proteins, tetracyclin repressor-like, C-terminal D homeodomain-like, DNA/RNA-binding 3-helical bundle; 1.55A {Aquifex aeolicus}
Probab=34.99 E-value=22 Score=24.67 Aligned_cols=24 Identities=13% Similarity=0.246 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHcCCccccC
Q psy1231 80 VVRNQVLDKIVKIFKKHGAVTIDT 103 (151)
Q Consensus 80 ~~~~~I~~~i~~~f~~~Gy~~IeT 103 (151)
..++.|.+...++|..+||..+..
T Consensus 2 ~tr~~Il~aA~~lf~~~Gy~~~s~ 25 (179)
T 2eh3_A 2 GTKERILEVSKELFFEKGYQGTSV 25 (179)
T ss_dssp CHHHHHHHHHHHHHHHHCSTTCCH
T ss_pred cHHHHHHHHHHHHHHHcCCccCCH
Confidence 468899999999999999987654
No 73
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=34.69 E-value=22 Score=32.40 Aligned_cols=29 Identities=10% Similarity=0.213 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHcCCccccCCccccH
Q psy1231 81 VRNQVLDKIVKIFKKHGAVTIDTPIFELK 109 (151)
Q Consensus 81 ~~~~I~~~i~~~f~~~Gy~~IeTPv~E~~ 109 (151)
-...+.+.+++.|...||.++.+|++|..
T Consensus 66 Pl~~~~~~IR~if~~mGF~E~~~p~vese 94 (665)
T 2odr_A 66 PVNDTIENLRQAYLRMGFEEYINPVIVDE 94 (665)
T ss_dssp HHHHHHHHHHHHHHHTTCEECCCCSEEEH
T ss_pred HHHHHHHHHHHHHHHCCCEEeeCCEEeee
Confidence 35778899999999999999999999753
No 74
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=34.23 E-value=23 Score=32.43 Aligned_cols=29 Identities=10% Similarity=0.213 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHcCCccccCCccccH
Q psy1231 81 VRNQVLDKIVKIFKKHGAVTIDTPIFELK 109 (151)
Q Consensus 81 ~~~~I~~~i~~~f~~~Gy~~IeTPv~E~~ 109 (151)
-...+.+.+++.|...||.++.+|++|..
T Consensus 66 Pl~~~~~~IReif~~mGF~E~~~p~vese 94 (685)
T 2odr_D 66 PVNDTIENLRQAYLRMGFEEYINPVIVDE 94 (685)
T ss_dssp HHHHHHHHHHHHHHHTTCEECCCCSEEEH
T ss_pred HHHHHHHHHHHHHHHCCCEEeeCCEEeeh
Confidence 35778899999999999999999999753
No 75
>3bqz_B HTH-type transcriptional regulator QACR; multidrug resistance, TETR, malachite green, DNA- binding, plasmid, repressor; HET: MGR; 2.17A {Staphylococcus aureus} PDB: 3br1_B* 3br3_B* 3pm1_B* 1rkw_B* 1jt0_A* 1jty_B* 1jum_B* 1jup_B* 1jtx_B* 1jus_B* 2dtz_B 2gby_B* 2hq5_B 3br2_B* 3br5_B* 1qvt_B* 1qvu_B* 3br0_B* 3br6_B* 1jt6_B* ...
Probab=33.83 E-value=19 Score=24.87 Aligned_cols=25 Identities=20% Similarity=0.353 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHcCCccccC
Q psy1231 79 TVVRNQVLDKIVKIFKKHGAVTIDT 103 (151)
Q Consensus 79 ~~~~~~I~~~i~~~f~~~Gy~~IeT 103 (151)
|..++.|.+...++|..+||..+..
T Consensus 1 ~~~r~~Il~aa~~l~~~~G~~~~ti 25 (194)
T 3bqz_B 1 MNLKDKILGVAKELFIKNGYNATTT 25 (194)
T ss_dssp ---CHHHHHHHHHHHHHHTTTTCCH
T ss_pred CcHHHHHHHHHHHHHHHcCCccCCH
Confidence 3467899999999999999987654
No 76
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=33.83 E-value=23 Score=32.45 Aligned_cols=29 Identities=10% Similarity=0.213 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHcCCccccCCccccH
Q psy1231 81 VRNQVLDKIVKIFKKHGAVTIDTPIFELK 109 (151)
Q Consensus 81 ~~~~I~~~i~~~f~~~Gy~~IeTPv~E~~ 109 (151)
-...+.+.+++.|...||.++.+|++|..
T Consensus 66 Pl~~~~~~IReif~~mGF~Ev~~p~Vese 94 (701)
T 2odr_C 66 PVNDTIENLRQAYLRMGFEEYINPVIVDE 94 (701)
T ss_dssp HHHHHHHHHHHHHHHTTCEECCCCSEEEH
T ss_pred HHHHHHHHHHHHHHHCCCEEeeCCEEeee
Confidence 35778899999999999999999999754
No 77
>3qqa_A CMER; alpha-helical, helix-turn-helix, DNA-binding, transcription regulation, transcription repressor, drug binding, transcri; HET: TCH; 2.20A {Campylobacter jejuni} PDB: 3hgy_A* 3qps_A* 2qco_A 3hgg_A*
Probab=33.39 E-value=42 Score=23.54 Aligned_cols=28 Identities=7% Similarity=0.133 Sum_probs=23.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHcCCccccC
Q psy1231 76 PDSTVVRNQVLDKIVKIFKKHGAVTIDT 103 (151)
Q Consensus 76 P~e~~~~~~I~~~i~~~f~~~Gy~~IeT 103 (151)
+.....++.|.+...++|..+||..+..
T Consensus 15 ~r~~~~r~~Il~aA~~lf~~~G~~~~t~ 42 (216)
T 3qqa_A 15 QKVLARQEKIKAVALELFLTKGYQETSL 42 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCTTTCCH
T ss_pred cccHHHHHHHHHHHHHHHHHcChhhCCH
Confidence 4456789999999999999999997653
No 78
>2zb9_A Putative transcriptional regulator; transcription regulator, TETR family, helix-turn-helix, DNA- binding, transcription regulation; 2.25A {Streptomyces coelicolor}
Probab=33.30 E-value=32 Score=24.42 Aligned_cols=29 Identities=17% Similarity=0.300 Sum_probs=24.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHcCCccccCC
Q psy1231 76 PDSTVVRNQVLDKIVKIFKKHGAVTIDTP 104 (151)
Q Consensus 76 P~e~~~~~~I~~~i~~~f~~~Gy~~IeTP 104 (151)
|.....++.|.+...++|..+||..+..-
T Consensus 19 ~r~~~~r~~Il~aA~~lf~~~G~~~~t~~ 47 (214)
T 2zb9_A 19 RPAEEVRAEVLHAVGELLLTEGTAQLTFE 47 (214)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHCGGGCCHH
T ss_pred CccHHHHHHHHHHHHHHHHHhCcccCCHH
Confidence 35567899999999999999999887543
No 79
>3b81_A Transcriptional regulator, ACRR family; NP_350189.1, predicted DNA-binding transcriptional regulator TETR/ACRR family; 2.10A {Clostridium acetobutylicum atcc 824}
Probab=32.88 E-value=31 Score=23.96 Aligned_cols=26 Identities=23% Similarity=0.250 Sum_probs=22.3
Q ss_pred hHHHHHHHHHHHHHHHHHcCCccccC
Q psy1231 78 STVVRNQVLDKIVKIFKKHGAVTIDT 103 (151)
Q Consensus 78 e~~~~~~I~~~i~~~f~~~Gy~~IeT 103 (151)
....++.|.+...++|..+||..+..
T Consensus 9 ~~~~r~~Il~aA~~lf~~~G~~~~s~ 34 (203)
T 3b81_A 9 FNNKRTELANKIWDIFIANGYENTTL 34 (203)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSTTCCH
T ss_pred hHHHHHHHHHHHHHHHHHcCcccCcH
Confidence 45679999999999999999997654
No 80
>3qkx_A Uncharacterized HTH-type transcriptional regulato; structural genomics, joint center for structural genomics; HET: MSE; 2.35A {Haemophilus influenzae}
Probab=32.83 E-value=39 Score=23.02 Aligned_cols=28 Identities=11% Similarity=0.231 Sum_probs=23.6
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCccccCC
Q psy1231 77 DSTVVRNQVLDKIVKIFKKHGAVTIDTP 104 (151)
Q Consensus 77 ~e~~~~~~I~~~i~~~f~~~Gy~~IeTP 104 (151)
.....++.|.+...++|..+||..+..-
T Consensus 5 ~~~~~r~~Il~aa~~l~~~~G~~~~ti~ 32 (188)
T 3qkx_A 5 AKTDLAEQIFSATDRLMAREGLNQLSML 32 (188)
T ss_dssp THHHHHHHHHHHHHHHHHHSCSTTCCHH
T ss_pred cchHHHHHHHHHHHHHHHhcCcccCCHH
Confidence 3457889999999999999999977643
No 81
>3mvp_A TETR/ACRR transcriptional regulator; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 1.85A {Streptococcus mutans}
Probab=32.61 E-value=49 Score=23.08 Aligned_cols=29 Identities=21% Similarity=0.283 Sum_probs=24.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHcCCccccCC
Q psy1231 76 PDSTVVRNQVLDKIVKIFKKHGAVTIDTP 104 (151)
Q Consensus 76 P~e~~~~~~I~~~i~~~f~~~Gy~~IeTP 104 (151)
+.....++.|.+...++|..+||..+..-
T Consensus 22 ~~~~~~r~~Il~aA~~l~~~~G~~~~t~~ 50 (217)
T 3mvp_A 22 ERSIEKRNKILQVAKDLFSDKTYFNVTTN 50 (217)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCGGGCCHH
T ss_pred ccchhHHHHHHHHHHHHHHHcCccccCHH
Confidence 35667899999999999999999887653
No 82
>2iu5_A DHAS, YCEG, HTH-type dhaklm operon transcriptional activator; synthase, TETR family; 1.6A {Lactococcus lactis subsp} SCOP: a.4.1.9 a.121.1.1
Probab=31.55 E-value=29 Score=24.34 Aligned_cols=28 Identities=7% Similarity=0.179 Sum_probs=23.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHcCCccccC
Q psy1231 76 PDSTVVRNQVLDKIVKIFKKHGAVTIDT 103 (151)
Q Consensus 76 P~e~~~~~~I~~~i~~~f~~~Gy~~IeT 103 (151)
|.....++.|.+...++|...||..+..
T Consensus 9 ~~~~~~r~~Il~aa~~lf~~~G~~~~tv 36 (195)
T 2iu5_A 9 EKSIITQKIIAKAFKDLMQSNAYHQISV 36 (195)
T ss_dssp CTTSHHHHHHHHHHHHHHHHSCGGGCCH
T ss_pred cccHHHHHHHHHHHHHHHHhCCCCeeCH
Confidence 3355689999999999999999997654
No 83
>3qbm_A TETR transcriptional regulator; DNA/RNA-binding three-helical bundle, structural genomics, J center for structural genomics, JCSG; HET: MSE PGE; 1.80A {Chloroflexus aurantiacus}
Probab=31.50 E-value=44 Score=22.98 Aligned_cols=27 Identities=15% Similarity=0.273 Sum_probs=23.1
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCccccC
Q psy1231 77 DSTVVRNQVLDKIVKIFKKHGAVTIDT 103 (151)
Q Consensus 77 ~e~~~~~~I~~~i~~~f~~~Gy~~IeT 103 (151)
.....++.|.+...++|..+||..+..
T Consensus 4 ~~~~~r~~Il~aa~~l~~~~G~~~~t~ 30 (199)
T 3qbm_A 4 KGQETRERVVAQAAALFNVSGYAGTAI 30 (199)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCSTTCCH
T ss_pred chhhHHHHHHHHHHHHHHHhCcCcCCH
Confidence 456778999999999999999997654
No 84
>2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB: 2du4_A 2du5_A* 2du6_A*
Probab=31.49 E-value=29 Score=30.73 Aligned_cols=29 Identities=7% Similarity=0.142 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHcCCccccCCccccHH
Q psy1231 82 RNQVLDKIVKIFKKHGAVTIDTPIFELKE 110 (151)
Q Consensus 82 ~~~I~~~i~~~f~~~Gy~~IeTPv~E~~e 110 (151)
...+.+.+++.|...||.++.||.|+...
T Consensus 49 ~~~~~~~Ir~~l~~lGF~Ev~~~s~~s~~ 77 (534)
T 2du3_A 49 LFATIQRLREAYLSIGFSEVVNPLIVEDV 77 (534)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCCCEEETH
T ss_pred HHHHHHHHHHHHHHCCCEEEeCceEeChh
Confidence 56788899999999999999999999664
No 85
>3vib_A MTRR; helix-turn-helix motif, DNA binding, DNA binding protein; HET: CXS; 2.40A {Neisseria gonorrhoeae}
Probab=30.55 E-value=34 Score=24.27 Aligned_cols=26 Identities=8% Similarity=0.222 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHHHHHHHHcCCccccC
Q psy1231 78 STVVRNQVLDKIVKIFKKHGAVTIDT 103 (151)
Q Consensus 78 e~~~~~~I~~~i~~~f~~~Gy~~IeT 103 (151)
....++.|.+...++|..+||..+..
T Consensus 8 ~~~tR~~Il~aA~~lf~~~G~~~~s~ 33 (210)
T 3vib_A 8 ALKTKEHLMLAALETFYRKGIARTSL 33 (210)
T ss_dssp CHHHHHHHHHHHHHHHHHHCTTTCCH
T ss_pred HHHHHHHHHHHHHHHHHHhCcccCCH
Confidence 34578999999999999999987654
No 86
>3anp_C Transcriptional repressor, TETR family; all alpha protein, DNA, acyl-COA; HET: DCC DAO; 1.95A {Thermus thermophilus} PDB: 3ang_C*
Probab=30.51 E-value=40 Score=23.74 Aligned_cols=26 Identities=12% Similarity=0.339 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHcCCccccCC
Q psy1231 79 TVVRNQVLDKIVKIFKKHGAVTIDTP 104 (151)
Q Consensus 79 ~~~~~~I~~~i~~~f~~~Gy~~IeTP 104 (151)
...++.|.+...++|..+||..+..-
T Consensus 8 ~~~r~~Il~aA~~lf~~~G~~~~t~~ 33 (204)
T 3anp_C 8 KRRRERIFRAAMELFRNRGFQETTAT 33 (204)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTTCCHH
T ss_pred HHHHHHHHHHHHHHHHHcCcccccHH
Confidence 45689999999999999999977643
No 87
>1sgm_A Putative HTH-type transcriptional regulator YXAF; structural genomics, PSI, protein structure initiative; 2.00A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=30.32 E-value=24 Score=24.21 Aligned_cols=25 Identities=12% Similarity=0.167 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHcCCccccC
Q psy1231 79 TVVRNQVLDKIVKIFKKHGAVTIDT 103 (151)
Q Consensus 79 ~~~~~~I~~~i~~~f~~~Gy~~IeT 103 (151)
...++.|.+...++|..+||..+..
T Consensus 5 ~~~r~~Il~aa~~l~~~~G~~~~t~ 29 (191)
T 1sgm_A 5 GDSREKILHTASRLSQLQGYHATGL 29 (191)
T ss_dssp CCHHHHHHHHHHHHHHHHCTTTCCH
T ss_pred cchHHHHHHHHHHHHHHcCccccCH
Confidence 3568999999999999999987643
No 88
>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=28.36 E-value=36 Score=29.93 Aligned_cols=31 Identities=19% Similarity=0.162 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHcCCccccC-CccccH
Q psy1231 79 TVVRNQVLDKIVKIFKKHGAVTIDT-PIFELK 109 (151)
Q Consensus 79 ~~~~~~I~~~i~~~f~~~Gy~~IeT-Pv~E~~ 109 (151)
..-.+.+.+.++++|...||.+|.| |.+|..
T Consensus 224 lHPl~~v~~~Ir~if~~mGF~Ev~t~~~ves~ 255 (508)
T 3l4g_A 224 LHPLLKVRSQFRQIFLEMGFTEMPTDNFIESS 255 (508)
T ss_dssp CCHHHHHHHHHHHHHHHTTCEECCCCCSEEEH
T ss_pred CCHHHHHHHHHHHHHHHCcCeEeccCCccccH
Confidence 3446889999999999999999875 777764
No 89
>3bhq_A Transcriptional regulator; bacterial RE proteins, structural genomics, joint center for structural JCSG, protein structure initiative, PSI-2; HET: MSE; 1.54A {Mesorhizobium loti}
Probab=27.79 E-value=43 Score=23.74 Aligned_cols=26 Identities=12% Similarity=0.137 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHHHHHHHHcCCccccC
Q psy1231 78 STVVRNQVLDKIVKIFKKHGAVTIDT 103 (151)
Q Consensus 78 e~~~~~~I~~~i~~~f~~~Gy~~IeT 103 (151)
....++.|.+...++|..+||..+..
T Consensus 10 ~~~~r~~Il~aA~~lf~~~G~~~ts~ 35 (211)
T 3bhq_A 10 SARKDREIIQAATAAFISKGYDGTSM 35 (211)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSTTCCH
T ss_pred cHhHHHHHHHHHHHHHHHhCcccCCH
Confidence 35678999999999999999987654
No 90
>2ko4_B General control protein GCN4; GAL11, mediator, activator, CO-activator, MED15, trans nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae} PDB: 2lpb_B
Probab=27.61 E-value=12 Score=21.02 Aligned_cols=10 Identities=40% Similarity=0.919 Sum_probs=8.4
Q ss_pred cCCccccHHh
Q psy1231 102 DTPIFELKEV 111 (151)
Q Consensus 102 eTPv~E~~ev 111 (151)
.||+||+..+
T Consensus 4 STP~Fe~d~~ 13 (34)
T 2ko4_B 4 STPMFEYENL 13 (34)
T ss_dssp SCCSCSSCCC
T ss_pred CccceeeccC
Confidence 5999999865
No 91
>3him_A Probable transcriptional regulator; TETR, bacterial, RHA1, PSI-2, MCSG, structural midwest center for structural genomics; 2.20A {Rhodococcus jostii}
Probab=27.05 E-value=47 Score=22.99 Aligned_cols=25 Identities=12% Similarity=0.238 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHcCCccccC
Q psy1231 79 TVVRNQVLDKIVKIFKKHGAVTIDT 103 (151)
Q Consensus 79 ~~~~~~I~~~i~~~f~~~Gy~~IeT 103 (151)
...++.|.+...++|..+||..+..
T Consensus 15 ~~~r~~Il~aa~~l~~~~G~~~~t~ 39 (211)
T 3him_A 15 SKAAARIRAAAIEVFAAKGYGATTT 39 (211)
T ss_dssp CHHHHHHHHHHHHHHHHHCSTTCCH
T ss_pred HHHHHHHHHHHHHHHHHcCCCcCCH
Confidence 4678999999999999999997543
No 92
>1rkt_A Protein YFIR; transcription regulator, structural genomics, PSI, protein S initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=26.72 E-value=50 Score=23.27 Aligned_cols=25 Identities=16% Similarity=0.304 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHcCCccccC
Q psy1231 79 TVVRNQVLDKIVKIFKKHGAVTIDT 103 (151)
Q Consensus 79 ~~~~~~I~~~i~~~f~~~Gy~~IeT 103 (151)
...++.|.+...++|..+||..+..
T Consensus 11 ~~~r~~Il~aA~~lf~~~Gy~~ts~ 35 (205)
T 1rkt_A 11 DKRQAEILEAAKTVFKRKGFELTTM 35 (205)
T ss_dssp HHHHHHHHHHHHHHHHHHCSTTCCH
T ss_pred HHHHHHHHHHHHHHHHHcCcccCCH
Confidence 4678899999999999999987654
No 93
>3lwj_A Putative TETR-family transcriptional regulator; structural G joint center for structural genomics, JCSG, protein structu initiative; 2.07A {Syntrophomonas wolfei subsp}
Probab=26.54 E-value=50 Score=22.86 Aligned_cols=26 Identities=15% Similarity=0.276 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHHHHHHHHcCCccccC
Q psy1231 78 STVVRNQVLDKIVKIFKKHGAVTIDT 103 (151)
Q Consensus 78 e~~~~~~I~~~i~~~f~~~Gy~~IeT 103 (151)
....++.|.+...++|..+||..+..
T Consensus 10 ~~~~r~~Il~aa~~l~~~~G~~~~t~ 35 (202)
T 3lwj_A 10 NKERRQKILTCSLDLFIEKGYYNTSI 35 (202)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTTCCH
T ss_pred cHHHHHHHHHHHHHHHHHcCcccCCH
Confidence 45678999999999999999987654
No 94
>3ig2_A Phenylalanyl-tRNA synthetase beta chain; phers, MCSG, structural genomics, midwest center for structural GE protein structure initiative; HET: MSE; 2.09A {Bacteroides fragilis}
Probab=26.32 E-value=60 Score=24.45 Aligned_cols=32 Identities=9% Similarity=0.042 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHcCCccccCCccccHHhhh
Q psy1231 82 RNQVLDKIVKIFKKHGAVTIDTPIFELKEVLT 113 (151)
Q Consensus 82 ~~~I~~~i~~~f~~~Gy~~IeTPv~E~~evf~ 113 (151)
.+++.+.+++.+...||.+|.|-.|-..+.+.
T Consensus 6 ~~~~~~~ir~~l~~~G~~Evitysf~~~~~~~ 37 (213)
T 3ig2_A 6 SNKLQNLVAEQLVGCGFNEILNNSLTRAAYYD 37 (213)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCCSEECGGGGT
T ss_pred HHHHHHHHHHHHHHCCCeEEeccccCCHHHHH
Confidence 45788889999999999999999997777654
No 95
>2qko_A Possible transcriptional regulator, TETR family P; TETR family protein, structural genomics, P protein structure initiative; 2.35A {Rhodococcus SP}
Probab=26.22 E-value=45 Score=23.66 Aligned_cols=28 Identities=11% Similarity=0.307 Sum_probs=21.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHcCCccccC
Q psy1231 76 PDSTVVRNQVLDKIVKIFKKHGAVTIDT 103 (151)
Q Consensus 76 P~e~~~~~~I~~~i~~~f~~~Gy~~IeT 103 (151)
+.....++.|.+...++|...||..+..
T Consensus 24 ~r~~~~r~~Il~aa~~lf~~~G~~~~tv 51 (215)
T 2qko_A 24 AQNPERRAALVNAAIEVLAREGARGLTF 51 (215)
T ss_dssp ---CHHHHHHHHHHHHHHHHTCTTTCCH
T ss_pred cccHHHHHHHHHHHHHHHHHhChhhccH
Confidence 3345779999999999999999987653
No 96
>3cwr_A Transcriptional regulator, TETR family; YP_425770.1, transcriptional regulator of TETR family, bacterial regulatory proteins; 1.50A {Rhodospirillum rubrum atcc 11170}
Probab=26.14 E-value=39 Score=23.39 Aligned_cols=26 Identities=19% Similarity=0.423 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHcCCccccCC
Q psy1231 79 TVVRNQVLDKIVKIFKKHGAVTIDTP 104 (151)
Q Consensus 79 ~~~~~~I~~~i~~~f~~~Gy~~IeTP 104 (151)
...++.|.+...++|..+||..+..-
T Consensus 16 ~~~r~~Il~aa~~lf~~~G~~~~ti~ 41 (208)
T 3cwr_A 16 AVVRESIVGAAQRLLSSGGAAAMTME 41 (208)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGCCHH
T ss_pred HHHHHHHHHHHHHHHHHcCHHhccHH
Confidence 67899999999999999999977643
No 97
>3col_A Putative transcription regulator; structural genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Lactobacillus plantarum WCFS1}
Probab=26.13 E-value=33 Score=23.50 Aligned_cols=26 Identities=15% Similarity=0.257 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHcCCccccCC
Q psy1231 79 TVVRNQVLDKIVKIFKKHGAVTIDTP 104 (151)
Q Consensus 79 ~~~~~~I~~~i~~~f~~~Gy~~IeTP 104 (151)
...++.|.+...++|..+||..+..-
T Consensus 9 ~~~r~~Il~aa~~l~~~~G~~~~ti~ 34 (196)
T 3col_A 9 MNKQVKIQDAVAAIILAEGPAGVSTT 34 (196)
T ss_dssp -CHHHHHHHHHHHHHHHHCGGGCCHH
T ss_pred HHHHHHHHHHHHHHHHhcCcccCCHH
Confidence 45789999999999999999877643
No 98
>2o7t_A Transcriptional regulator; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: UNL; 2.10A {Corynebacterium glutamicum} SCOP: a.4.1.9 a.121.1.1
Probab=25.95 E-value=60 Score=22.65 Aligned_cols=28 Identities=11% Similarity=0.342 Sum_probs=23.5
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCccccCC
Q psy1231 77 DSTVVRNQVLDKIVKIFKKHGAVTIDTP 104 (151)
Q Consensus 77 ~e~~~~~~I~~~i~~~f~~~Gy~~IeTP 104 (151)
.....++.|.+...++|...||..+..-
T Consensus 5 ~~~~~r~~Il~aA~~lf~~~G~~~~t~~ 32 (199)
T 2o7t_A 5 DALKRREHIITTTCNLYRTHHHDSLTME 32 (199)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCGGGCCHH
T ss_pred cHHHHHHHHHHHHHHHHHHCCCccCCHH
Confidence 4556789999999999999999986543
No 99
>3kz9_A SMCR; transcriptional regulator, quorum S DNA-binding, transcription regulation, transcription regula; HET: MSE; 2.10A {Vibrio vulnificus} PDB: 2pbx_A
Probab=25.93 E-value=53 Score=22.62 Aligned_cols=27 Identities=11% Similarity=0.246 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHHHHHHHHcCCccccCC
Q psy1231 78 STVVRNQVLDKIVKIFKKHGAVTIDTP 104 (151)
Q Consensus 78 e~~~~~~I~~~i~~~f~~~Gy~~IeTP 104 (151)
....++.|.+...++|..+||..+..-
T Consensus 15 ~~~~r~~Il~aa~~l~~~~G~~~~s~~ 41 (206)
T 3kz9_A 15 PLKRKQQLMEIALEVFARRGIGRGGHA 41 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCSSCCHH
T ss_pred HHHHHHHHHHHHHHHHHhcCcccccHH
Confidence 456789999999999999999976543
No 100
>3ica_A Phenylalanyl-tRNA synthetase beta chain; APC61692.1, phenylalanyl-tRNA SYNT beta subunit, structural genomics, PSI-2; HET: TAM; 2.44A {Porphyromonas gingivalis}
Probab=25.89 E-value=57 Score=24.57 Aligned_cols=33 Identities=9% Similarity=-0.047 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHcCCccccCCccccHHhhh
Q psy1231 81 VRNQVLDKIVKIFKKHGAVTIDTPIFELKEVLT 113 (151)
Q Consensus 81 ~~~~I~~~i~~~f~~~Gy~~IeTPv~E~~evf~ 113 (151)
..+++.+.+++.+...||.+|.|-.|-..+.+.
T Consensus 5 ~~~~~~~~ir~~L~~~G~~Evitysf~s~~~~~ 37 (213)
T 3ica_A 5 RRYKWQTVVSEQLVGAGFNEILNNSLTAGSYYE 37 (213)
T ss_dssp HHHHHHHHHHHHHHHTTCEECCCCSEEEGGGGT
T ss_pred HHHHHHHHHHHHHHHCCCceeeeccCCCHHHHh
Confidence 356788899999999999999999998777654
No 101
>2xdn_A HTH-type transcriptional regulator TTGR; transcription regulation, TETR family; 2.20A {Pseudomonas putida} PDB: 2uxu_A* 2uxi_A* 2uxo_A* 2uxp_A* 2uxh_A*
Probab=25.75 E-value=62 Score=22.79 Aligned_cols=26 Identities=19% Similarity=0.349 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHHHHHHHHcCCccccC
Q psy1231 78 STVVRNQVLDKIVKIFKKHGAVTIDT 103 (151)
Q Consensus 78 e~~~~~~I~~~i~~~f~~~Gy~~IeT 103 (151)
....++.|.+...++|..+||..+..
T Consensus 9 ~~~~r~~Il~aA~~lf~~~G~~~~s~ 34 (210)
T 2xdn_A 9 AQETRAQIIEAAERAFYKRGVARTTL 34 (210)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSTTCCH
T ss_pred HHHHHHHHHHHHHHHHHHcCcccCcH
Confidence 45678999999999999999987653
No 102
>2hyt_A TETR-family transcriptional regulator; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.64A {Pectobacterium atrosepticum}
Probab=25.40 E-value=65 Score=22.55 Aligned_cols=26 Identities=19% Similarity=0.294 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHHHHHHHHcCCccccC
Q psy1231 78 STVVRNQVLDKIVKIFKKHGAVTIDT 103 (151)
Q Consensus 78 e~~~~~~I~~~i~~~f~~~Gy~~IeT 103 (151)
....++.|.+...++|..+||..+..
T Consensus 10 ~~~~r~~Il~aA~~lf~~~G~~~~s~ 35 (197)
T 2hyt_A 10 MEETRATLLATARKVFSERGYADTSM 35 (197)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTTCCH
T ss_pred HHHHHHHHHHHHHHHHHHhCcccCCH
Confidence 34578999999999999999987654
No 103
>3kkc_A TETR family transcriptional regulator; APC20805, structural genomics, PSI-2, protein structure initiative; 2.50A {Streptococcus agalactiae 2603V}
Probab=25.32 E-value=42 Score=22.79 Aligned_cols=26 Identities=4% Similarity=0.202 Sum_probs=22.3
Q ss_pred hHHHHHHHHHHHHHHHHHcCCccccC
Q psy1231 78 STVVRNQVLDKIVKIFKKHGAVTIDT 103 (151)
Q Consensus 78 e~~~~~~I~~~i~~~f~~~Gy~~IeT 103 (151)
....++.|.+...++|...||..+..
T Consensus 10 ~~~tr~~Il~aa~~l~~~~G~~~~tv 35 (177)
T 3kkc_A 10 IQKTKVAIYNAFISLLQENDYSKITV 35 (177)
T ss_dssp HHHHHHHHHHHHHHHTTTSCTTTCCH
T ss_pred HHHHHHHHHHHHHHHHHhCChhHhhH
Confidence 45678999999999999999988764
No 104
>3pas_A TETR family transcription regulator; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.90A {Marinobacter aquaeolei}
Probab=24.87 E-value=31 Score=23.62 Aligned_cols=28 Identities=18% Similarity=0.219 Sum_probs=23.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHcCCccccC
Q psy1231 76 PDSTVVRNQVLDKIVKIFKKHGAVTIDT 103 (151)
Q Consensus 76 P~e~~~~~~I~~~i~~~f~~~Gy~~IeT 103 (151)
+.....++.|.+...++|..+||..+..
T Consensus 4 ~~~~~~r~~Il~aa~~l~~~~G~~~~t~ 31 (195)
T 3pas_A 4 QRDDSKRIAFLEATVREVADHGFSATSV 31 (195)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCH
T ss_pred cchhHHHHHHHHHHHHHHHHcChHhcCH
Confidence 3455789999999999999999987654
No 105
>3bjb_A Probable transcriptional regulator, TETR family P; APC7331, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.50A {Rhodococcus SP}
Probab=24.73 E-value=57 Score=23.24 Aligned_cols=27 Identities=4% Similarity=0.197 Sum_probs=22.8
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCccccC
Q psy1231 77 DSTVVRNQVLDKIVKIFKKHGAVTIDT 103 (151)
Q Consensus 77 ~e~~~~~~I~~~i~~~f~~~Gy~~IeT 103 (151)
.....++.|.+...++|...||..+..
T Consensus 19 ~~~~~r~~Il~AA~~lf~e~G~~~~s~ 45 (207)
T 3bjb_A 19 EQRARHVRMLEAAIELATEKELARVQM 45 (207)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCGGGCCH
T ss_pred chHHHHHHHHHHHHHHHHHcCcccCCH
Confidence 345678999999999999999987653
No 106
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=24.59 E-value=1.5e+02 Score=19.13 Aligned_cols=43 Identities=35% Similarity=0.514 Sum_probs=32.5
Q ss_pred HHHHHHHHHhhHHHH-hhhcCCC-ChhhH-HHHHHHHHHHHHhhch
Q psy1231 8 ADIQESIKAQGDVVR-KLKSSKA-PKEQI-DEEVKKLLELKNQLKI 50 (151)
Q Consensus 8 ~~l~~~i~~qg~~VR-~LK~~ka-~k~~I-~~~V~kLl~LK~ql~~ 50 (151)
..+...+...+..|- .++..++ +|..| ..+++-+..|+.++..
T Consensus 18 ~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e 63 (76)
T 3u5v_A 18 RDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRE 63 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 346677888888888 4777776 67766 5778888888888765
No 107
>3gk6_A Integron cassette protein VCH_CASS2; novel, oyster PO HOLE, USA, structural genomics, PSI-2; HET: MSE PE4; 1.80A {Vibrio cholerae}
Probab=24.54 E-value=34 Score=24.75 Aligned_cols=45 Identities=16% Similarity=0.036 Sum_probs=29.6
Q ss_pred cccCCCccccCChhhHHHHHHHHHHHHHHHHHc----C--CccccCCccccH
Q psy1231 64 ILKTPKGTRDYGPDSTVVRNQVLDKIVKIFKKH----G--AVTIDTPIFELK 109 (151)
Q Consensus 64 ~~~~pkGtrD~lP~e~~~~~~I~~~i~~~f~~~----G--y~~IeTPv~E~~ 109 (151)
.+.+|.|++=.+.-.-..-+.|.++|..+|. | | |+..++|-||.+
T Consensus 107 ~~~IP~g~YAVF~~~G~~p~~i~~~w~~I~~-WlP~sg~~y~~~~~pdfE~Y 157 (170)
T 3gk6_A 107 KTKVSSGKYVTFSATGEMPQVVIDLWNEVWN-YFASEHCPHKRAYTTDFEYY 157 (170)
T ss_dssp EEEECCEEEEEEEEESSTTHHHHHHHHHHHH-HHC---CCCCBCCSEEEEEC
T ss_pred EEEECCCCEEEEEecCCCHHHHHHHHHHHHH-hhhhcCCcceecCcCCEEEE
Confidence 4566777665553322222357777777777 6 8 999999999987
No 108
>3lhq_A Acrab operon repressor (TETR/ACRR family); structural genomics, IDP02616, csgid, DNA-binding, transcription, transcription regulation; 1.56A {Salmonella enterica subsp} PDB: 3bcg_A 2qop_A
Probab=24.38 E-value=63 Score=22.41 Aligned_cols=26 Identities=19% Similarity=0.460 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHHHHHHHHcCCccccC
Q psy1231 78 STVVRNQVLDKIVKIFKKHGAVTIDT 103 (151)
Q Consensus 78 e~~~~~~I~~~i~~~f~~~Gy~~IeT 103 (151)
....++.|.+...++|..+||..+..
T Consensus 12 ~~~~r~~Il~aa~~l~~~~G~~~~ti 37 (220)
T 3lhq_A 12 ALETRQHILDVALRLFSQQGVSATSL 37 (220)
T ss_dssp SHHHHHHHHHHHHHHHHHHCSTTCCH
T ss_pred HHHHHHHHHHHHHHHHHHcCcccCCH
Confidence 34578999999999999999997654
No 109
>3ccy_A Putative TETR-family transcriptional regulator; APC88698, structural G PSI-2, protein structure initiative; HET: MSE; 2.01A {Bordetella parapertussis 12822}
Probab=24.27 E-value=56 Score=22.88 Aligned_cols=25 Identities=12% Similarity=0.448 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHcCCccccC
Q psy1231 79 TVVRNQVLDKIVKIFKKHGAVTIDT 103 (151)
Q Consensus 79 ~~~~~~I~~~i~~~f~~~Gy~~IeT 103 (151)
...++.|.+...++|...||..+..
T Consensus 13 ~~~r~~Il~aA~~lf~~~G~~~~s~ 37 (203)
T 3ccy_A 13 ENIRDTIIERAAAMFARQGYSETSI 37 (203)
T ss_dssp TTHHHHHHHHHHHHHHHTCTTTSCH
T ss_pred hhHHHHHHHHHHHHHHHcCcccCCH
Confidence 3468999999999999999997653
No 110
>3q0w_A HTH-type transcriptional regulator EThr; TETR family, transcriptional repressor, transcription-transc inhibitor complex; HET: LL5; 1.60A {Mycobacterium tuberculosis} PDB: 3o8g_A* 3o8h_A* 3q0u_A* 3q0v_A* 3g1m_A* 3q3s_A* 3sdg_A* 3sfi_A* 1u9n_A* 1u9o_A* 3tp3_A 3qpl_A 3g1l_A* 1t56_A 3tp0_A*
Probab=24.23 E-value=53 Score=23.84 Aligned_cols=29 Identities=10% Similarity=0.163 Sum_probs=23.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHcCCccccCC
Q psy1231 76 PDSTVVRNQVLDKIVKIFKKHGAVTIDTP 104 (151)
Q Consensus 76 P~e~~~~~~I~~~i~~~f~~~Gy~~IeTP 104 (151)
|.....++.|.+...++|..+||..+..-
T Consensus 40 ~~~~~~r~~Il~aA~~lf~e~G~~~~t~~ 68 (236)
T 3q0w_A 40 PSGDDRELAILATAENLLEDRPLADISVD 68 (236)
T ss_dssp --CHHHHHHHHHHHHHHHHHSCGGGCCHH
T ss_pred CChHHHHHHHHHHHHHHHHHcCcccCCHH
Confidence 34567889999999999999999877654
No 111
>1ytr_A Bacteriocin plantaricin A; antibiotic, pheromone, amphipathic helix, micelle; NMR {Synthetic}
Probab=24.06 E-value=35 Score=17.69 Aligned_cols=13 Identities=38% Similarity=0.713 Sum_probs=10.0
Q ss_pred HHHHHHHHHHcCC
Q psy1231 86 LDKIVKIFKKHGA 98 (151)
Q Consensus 86 ~~~i~~~f~~~Gy 98 (151)
+.++.++|+.||.
T Consensus 14 ikqvkklfkkwgw 26 (26)
T 1ytr_A 14 IKQVKKLFKKWGW 26 (26)
T ss_dssp HHHHHHHHTTCCC
T ss_pred HHHHHHHHHHcCC
Confidence 4567888999885
No 112
>3rd3_A Probable transcriptional regulator; 2.40A {Pseudomonas aeruginosa}
Probab=24.05 E-value=49 Score=22.70 Aligned_cols=27 Identities=19% Similarity=0.209 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHHHHHHHHcCCccccCC
Q psy1231 78 STVVRNQVLDKIVKIFKKHGAVTIDTP 104 (151)
Q Consensus 78 e~~~~~~I~~~i~~~f~~~Gy~~IeTP 104 (151)
....++.|.+...++|..+||..+..-
T Consensus 8 ~~~~r~~Il~aa~~lf~~~G~~~~t~~ 34 (197)
T 3rd3_A 8 YDDTRQHLLDTGYRIMAVKGFSGVGLN 34 (197)
T ss_dssp --CHHHHHHHHHHHHHHHHCSTTCCHH
T ss_pred hHhHHHHHHHHHHHHHHHCCcccCCHH
Confidence 345789999999999999999977543
No 113
>3jsj_A Putative TETR-family transcriptional regulator; DNA-binding, transcription regulation; 2.10A {Streptomyces avermitilis ma-4680}
Probab=24.01 E-value=49 Score=22.83 Aligned_cols=25 Identities=16% Similarity=0.267 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHcCCccccCC
Q psy1231 79 TVVRNQVLDKIVKIFKKHGAVTIDTP 104 (151)
Q Consensus 79 ~~~~~~I~~~i~~~f~~~Gy~~IeTP 104 (151)
...++.|.+...++|..+||. +.+-
T Consensus 8 ~~~r~~Il~aA~~lf~~~G~~-~t~~ 32 (190)
T 3jsj_A 8 QSPRERLLEAAAALTYRDGVG-IGVE 32 (190)
T ss_dssp CCHHHHHHHHHHHHHHHHCTT-CCHH
T ss_pred chHHHHHHHHHHHHHHHhCcc-ccHH
Confidence 356899999999999999999 7643
No 114
>2ibd_A Possible transcriptional regulator; probable transcriptional regulatory protein, rhodococcus SP. structural genomics, PSI-2; 1.50A {Rhodococcus SP}
Probab=23.90 E-value=58 Score=22.91 Aligned_cols=26 Identities=19% Similarity=0.317 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHcCCccccCC
Q psy1231 79 TVVRNQVLDKIVKIFKKHGAVTIDTP 104 (151)
Q Consensus 79 ~~~~~~I~~~i~~~f~~~Gy~~IeTP 104 (151)
...++.|.+...++|..+||..+..-
T Consensus 13 ~~~r~~Il~aA~~lf~~~G~~~~s~~ 38 (204)
T 2ibd_A 13 SGRRTELLDIAATLFAERGLRATTVR 38 (204)
T ss_dssp HHHHHHHHHHHHHHHHHHCSTTCCHH
T ss_pred chhHHHHHHHHHHHHHHcCchhcCHH
Confidence 36789999999999999999976543
No 115
>1t33_A Putative transcriptional repressor (TETR/ACRR FAM; structural genomics, TETR/CCRR FA helix turn helix DNA binding domain, PSI; 2.20A {Salmonella typhimurium} SCOP: a.4.1.9 a.121.1.1
Probab=23.74 E-value=54 Score=23.22 Aligned_cols=27 Identities=15% Similarity=0.229 Sum_probs=22.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHcCCccccC
Q psy1231 76 PDSTVVRNQVLDKIVKIFKKHGAVTIDT 103 (151)
Q Consensus 76 P~e~~~~~~I~~~i~~~f~~~Gy~~IeT 103 (151)
+.....++.|.+...++|..+||. +..
T Consensus 8 ~~~~~~r~~Il~aA~~lf~~~G~~-~s~ 34 (224)
T 1t33_A 8 TKGEQAKSQLIAAALAQFGEYGLH-ATT 34 (224)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHGGG-SCH
T ss_pred CccHHHHHHHHHHHHHHHHHhCcc-ccH
Confidence 345678899999999999999999 654
No 116
>3cdl_A Transcriptional regulator AEFR; APC88582, TETR, pseudomonas syringae PV. tomato STR. DC3000, structural genomics, PSI-2; HET: MSE; 2.36A {Pseudomonas syringae PV}
Probab=23.41 E-value=54 Score=23.10 Aligned_cols=25 Identities=12% Similarity=0.206 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHcCCccccC
Q psy1231 79 TVVRNQVLDKIVKIFKKHGAVTIDT 103 (151)
Q Consensus 79 ~~~~~~I~~~i~~~f~~~Gy~~IeT 103 (151)
...++.|.+...++|..+||..+..
T Consensus 8 ~~~r~~Il~aA~~lf~~~G~~~~s~ 32 (203)
T 3cdl_A 8 DQKRESIVQAAIAEFGDRGFEITSM 32 (203)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTTCCH
T ss_pred hhHHHHHHHHHHHHHHHcCchhcCH
Confidence 3568999999999999999987654
No 117
>2wui_A MEXZ, transcriptional regulator; gene regulation, transcription regulation, TETR, DNA-binding transcription; 2.90A {Pseudomonas aeruginosa}
Probab=23.36 E-value=64 Score=22.84 Aligned_cols=25 Identities=24% Similarity=0.399 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHcCCccccC
Q psy1231 79 TVVRNQVLDKIVKIFKKHGAVTIDT 103 (151)
Q Consensus 79 ~~~~~~I~~~i~~~f~~~Gy~~IeT 103 (151)
...++.|.+...++|..+||..+..
T Consensus 10 ~~~r~~Il~aA~~lf~~~G~~~~s~ 34 (210)
T 2wui_A 10 QKTRDGILDAAERVFLEKGVGTTAM 34 (210)
T ss_dssp THHHHHHHHHHHHHHHHSCTTTCCH
T ss_pred HHHHHHHHHHHHHHHHHcCccccCH
Confidence 4568999999999999999986543
No 118
>3dew_A Transcriptional regulator, TETR family; S genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 1.75A {Geobacter sulfurreducens}
Probab=23.19 E-value=53 Score=22.57 Aligned_cols=25 Identities=12% Similarity=0.347 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHcCCccccCC
Q psy1231 80 VVRNQVLDKIVKIFKKHGAVTIDTP 104 (151)
Q Consensus 80 ~~~~~I~~~i~~~f~~~Gy~~IeTP 104 (151)
..++.|.+...++|..+||..+..-
T Consensus 8 ~~r~~Il~aa~~l~~~~G~~~~t~~ 32 (206)
T 3dew_A 8 DCRSRLMEVATELFAQKGFYGVSIR 32 (206)
T ss_dssp CHHHHHHHHHHHHHHHHCGGGCCHH
T ss_pred HHHHHHHHHHHHHHhcCCcccCcHH
Confidence 4688999999999999999876543
No 119
>3s5r_A Transcriptional regulator TETR family; DNA/RNA-binding 3-helical bundle, tetracyclin repressor-like structural genomics; 2.60A {Syntrophus aciditrophicus}
Probab=22.79 E-value=53 Score=22.95 Aligned_cols=26 Identities=19% Similarity=0.369 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHcCCccccCC
Q psy1231 79 TVVRNQVLDKIVKIFKKHGAVTIDTP 104 (151)
Q Consensus 79 ~~~~~~I~~~i~~~f~~~Gy~~IeTP 104 (151)
...++.|.+...++|..+||..+..-
T Consensus 9 ~~~r~~Il~aa~~l~~~~G~~~~ti~ 34 (216)
T 3s5r_A 9 KNTRELLLDAATTLFAEQGIAATTMA 34 (216)
T ss_dssp CCHHHHHHHHHHHHHHHHCTTTCCHH
T ss_pred hHHHHHHHHHHHHHHHHcCcccCCHH
Confidence 35689999999999999999976543
No 120
>3knw_A Putative transcriptional regulator (TETR/ACRR FAM; TETR-like protein, MCSG, PSI, structural genomics, protein S initiative; 2.45A {Acinetobacter SP}
Probab=22.70 E-value=63 Score=22.45 Aligned_cols=27 Identities=22% Similarity=0.342 Sum_probs=23.0
Q ss_pred hHHHHHHHHHHHHHHHHHcCCccccCC
Q psy1231 78 STVVRNQVLDKIVKIFKKHGAVTIDTP 104 (151)
Q Consensus 78 e~~~~~~I~~~i~~~f~~~Gy~~IeTP 104 (151)
....++.|.+...++|..+||..+..-
T Consensus 12 ~~~~r~~Il~aa~~l~~~~G~~~~ti~ 38 (212)
T 3knw_A 12 SEAKRQHILDSGFHLVLRKGFVGVGLQ 38 (212)
T ss_dssp CHHHHHHHHHHHHHHHHHHCSTTCCHH
T ss_pred chhhHHHHHHHHHHHHHHcCCccCCHH
Confidence 446789999999999999999887643
No 121
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=22.66 E-value=69 Score=22.31 Aligned_cols=27 Identities=15% Similarity=0.311 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHHHHHHHHcCCccccCC
Q psy1231 78 STVVRNQVLDKIVKIFKKHGAVTIDTP 104 (151)
Q Consensus 78 e~~~~~~I~~~i~~~f~~~Gy~~IeTP 104 (151)
....++.|.+...++|...||..+..-
T Consensus 29 ~~~~r~~Il~aa~~l~~~~G~~~~tv~ 55 (218)
T 3dcf_A 29 GNDRRTQIIKVATELFREKGYYATSLD 55 (218)
T ss_dssp -CHHHHHHHHHHHHHHHHTCTTTCCHH
T ss_pred ccchHHHHHHHHHHHHHHcCcccCcHH
Confidence 345689999999999999999977643
No 122
>3on2_A Probable transcriptional regulator; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG; HET: MSE PG6; 1.96A {Rhodococcus jostii}
Probab=22.66 E-value=55 Score=22.40 Aligned_cols=24 Identities=17% Similarity=0.290 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHcCCccccC
Q psy1231 80 VVRNQVLDKIVKIFKKHGAVTIDT 103 (151)
Q Consensus 80 ~~~~~I~~~i~~~f~~~Gy~~IeT 103 (151)
..++.|.+...++|..+||..+..
T Consensus 12 ~~r~~Il~aA~~lf~~~G~~~~t~ 35 (199)
T 3on2_A 12 SLRRVLLARAESTLEKDGVDGLSL 35 (199)
T ss_dssp CHHHHHHHHHHHHHHHHCGGGCCH
T ss_pred HHHHHHHHHHHHHHHhcChhhhhH
Confidence 468999999999999999997543
No 123
>2nx4_A Transcriptional regulator, TETR family protein; HTH DNA binding motif, structural genomics, PSI-2, Pro structure initiative; 1.70A {Rhodococcus SP}
Probab=22.64 E-value=71 Score=22.34 Aligned_cols=25 Identities=8% Similarity=0.143 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHcCCccccC
Q psy1231 79 TVVRNQVLDKIVKIFKKHGAVTIDT 103 (151)
Q Consensus 79 ~~~~~~I~~~i~~~f~~~Gy~~IeT 103 (151)
...++.|.+...++|...||..+.+
T Consensus 9 ~~~r~~Il~aA~~lf~~~G~~~~s~ 33 (194)
T 2nx4_A 9 DERRRSITAAAWRLIAARGIEAANM 33 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTTCCH
T ss_pred HHHHHHHHHHHHHHHHhcCcccCCH
Confidence 3568999999999999999987654
No 124
>2fd5_A Transcriptional regulator; DNA-binding protein, structural G PSI, protein structure initiative, midwest center for struc genomics, MCSG; 1.70A {Pseudomonas aeruginosa} SCOP: a.4.1.9 a.121.1.1
Probab=22.51 E-value=71 Score=21.76 Aligned_cols=26 Identities=23% Similarity=0.330 Sum_probs=21.7
Q ss_pred hHHHHHHHHHHHHHHHHHcCCccccC
Q psy1231 78 STVVRNQVLDKIVKIFKKHGAVTIDT 103 (151)
Q Consensus 78 e~~~~~~I~~~i~~~f~~~Gy~~IeT 103 (151)
....++.|.+...++|...||..+..
T Consensus 5 ~~~~r~~Il~aA~~l~~~~G~~~~s~ 30 (180)
T 2fd5_A 5 KTQTRARILGAATQALLERGAVEPSV 30 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTSCCH
T ss_pred cccCHHHHHHHHHHHHHHhCcccCCH
Confidence 34678999999999999999986543
No 125
>2id3_A Putative transcriptional regulator; structural genomics, PSI-2, prote structure initiative; 1.70A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=22.49 E-value=70 Score=23.04 Aligned_cols=28 Identities=18% Similarity=0.182 Sum_probs=24.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHcCCccccC
Q psy1231 76 PDSTVVRNQVLDKIVKIFKKHGAVTIDT 103 (151)
Q Consensus 76 P~e~~~~~~I~~~i~~~f~~~Gy~~IeT 103 (151)
+.....++.|.+...++|...||..+..
T Consensus 36 ~r~~~~r~~Il~aA~~lf~~~G~~~~t~ 63 (225)
T 2id3_A 36 GRTARIREAVLLAAGDALAADGFDALDL 63 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCGGGCCH
T ss_pred CCchHHHHHHHHHHHHHHHHhCcccCCH
Confidence 5677789999999999999999997654
No 126
>3egq_A TETR family transcriptional regulator; DNA-binding, transcription regulation, bacterial regulatory DNA/RNA-binding 3-helical bundle fold; HET: MSE PE8; 2.55A {Archaeoglobus fulgidus}
Probab=22.35 E-value=47 Score=22.48 Aligned_cols=25 Identities=4% Similarity=0.215 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHcCCccccCC
Q psy1231 80 VVRNQVLDKIVKIFKKHGAVTIDTP 104 (151)
Q Consensus 80 ~~~~~I~~~i~~~f~~~Gy~~IeTP 104 (151)
..++.|.+...++|..+||..+..-
T Consensus 4 ~~r~~Il~aa~~l~~~~G~~~~t~~ 28 (170)
T 3egq_A 4 DQSVRIIEAALRLYMKKPPHEVSIE 28 (170)
T ss_dssp HHHHHHHHHHHHHHTTSCGGGCCHH
T ss_pred HHHHHHHHHHHHHHHhcCCccCcHH
Confidence 4689999999999999999876543
No 127
>3vpr_A Transcriptional regulator, TETR family; all alpha, helix-turn-helix, transcriptional repressor, DNA protein; 2.27A {Thermus thermophilus}
Probab=22.26 E-value=61 Score=22.40 Aligned_cols=23 Identities=22% Similarity=0.531 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHcCCccccC
Q psy1231 81 VRNQVLDKIVKIFKKHGAVTIDT 103 (151)
Q Consensus 81 ~~~~I~~~i~~~f~~~Gy~~IeT 103 (151)
.++.|.+...++|...||..+..
T Consensus 4 tr~~Il~aA~~lf~~~G~~~~s~ 26 (190)
T 3vpr_A 4 TRDRILEEAAKLFTEKGYEATSV 26 (190)
T ss_dssp HHHHHHHHHHHHHHHHCSTTCCH
T ss_pred hHHHHHHHHHHHHHHhCcccCCH
Confidence 57899999999999999997654
No 128
>4hku_A LMO2814 protein, TETR transcriptional regulator; structural genomics, PSI-biology; 2.30A {Listeria monocytogenes}
Probab=22.21 E-value=47 Score=23.10 Aligned_cols=23 Identities=17% Similarity=0.216 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHcCCccccC
Q psy1231 81 VRNQVLDKIVKIFKKHGAVTIDT 103 (151)
Q Consensus 81 ~~~~I~~~i~~~f~~~Gy~~IeT 103 (151)
.++.|.+...++|..+||..+..
T Consensus 8 tRe~Il~aA~~lf~~~G~~~~s~ 30 (178)
T 4hku_A 8 SQEIILNMAEKIIYEKGMEKTTL 30 (178)
T ss_dssp CHHHHHHHHHHHHHHHCGGGCCH
T ss_pred HHHHHHHHHHHHHHHhCcccccH
Confidence 37899999999999999987653
No 129
>2f07_A YVDT; helix-turn-helix, transcription; HET: BTB; 2.30A {Bacillus subtilis subsp}
Probab=22.09 E-value=62 Score=22.72 Aligned_cols=25 Identities=8% Similarity=0.199 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHcCCccccCC
Q psy1231 80 VVRNQVLDKIVKIFKKHGAVTIDTP 104 (151)
Q Consensus 80 ~~~~~I~~~i~~~f~~~Gy~~IeTP 104 (151)
..++.|.+...++|..+||..+..-
T Consensus 10 ~~r~~Il~aA~~lf~~~G~~~~s~~ 34 (197)
T 2f07_A 10 GKYEKILQAAIEVISEKGLDKASIS 34 (197)
T ss_dssp SHHHHHHHHHHHHHHHHCTTTCCHH
T ss_pred HHHHHHHHHHHHHHHHhCcccCCHH
Confidence 4689999999999999999976543
No 130
>3nrg_A TETR family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.56A {Chloroflexus aurantiacus}
Probab=21.93 E-value=65 Score=22.48 Aligned_cols=24 Identities=13% Similarity=0.311 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHcCCccccC
Q psy1231 80 VVRNQVLDKIVKIFKKHGAVTIDT 103 (151)
Q Consensus 80 ~~~~~I~~~i~~~f~~~Gy~~IeT 103 (151)
..++.|.+...++|..+||..+..
T Consensus 13 ~~r~~Il~aA~~lf~~~G~~~~t~ 36 (217)
T 3nrg_A 13 EKRSRLIDVLLDEFAQNDYDSVSI 36 (217)
T ss_dssp HHHHHHHHHHHHHHHHSCGGGCCH
T ss_pred HHHHHHHHHHHHHHHhcCcccCCH
Confidence 578999999999999999996543
No 131
>2qtq_A Transcriptional regulator, TETR family; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: MSE; 1.85A {Novosphingobium aromaticivorans} PDB: 2rha_A*
Probab=21.89 E-value=62 Score=22.45 Aligned_cols=26 Identities=19% Similarity=0.300 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHcCCccccCC
Q psy1231 79 TVVRNQVLDKIVKIFKKHGAVTIDTP 104 (151)
Q Consensus 79 ~~~~~~I~~~i~~~f~~~Gy~~IeTP 104 (151)
...++.|.+...++|...||..+..-
T Consensus 15 ~~~r~~Il~aa~~lf~~~G~~~~t~~ 40 (213)
T 2qtq_A 15 PGARDLLLQTASNIMREGDVVDISLS 40 (213)
T ss_dssp TTHHHHHHHHHHHHHHHHTSSCCCHH
T ss_pred hhHHHHHHHHHHHHHHHcCcccccHH
Confidence 45689999999999999999877654
No 132
>3vp5_A Transcriptional regulator; heme, sensor protein, TETR superf transcription; HET: HEM; 1.90A {Lactococcus lactis} PDB: 3vox_A 3vok_A*
Probab=21.89 E-value=72 Score=22.30 Aligned_cols=24 Identities=25% Similarity=0.315 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHcCCccccC
Q psy1231 80 VVRNQVLDKIVKIFKKHGAVTIDT 103 (151)
Q Consensus 80 ~~~~~I~~~i~~~f~~~Gy~~IeT 103 (151)
..++.|.+...++|...||..+..
T Consensus 12 ~tr~~Il~aa~~l~~~~G~~~~ti 35 (189)
T 3vp5_A 12 EKRNRVYDACLNEFQTHSFHEAKI 35 (189)
T ss_dssp HHHHHHHHHHHHHHHHSCTTTCCH
T ss_pred HHHHHHHHHHHHHHHHCCcccccH
Confidence 578999999999999999988753
No 133
>3crj_A Transcription regulator; APC88200, TETR, structura genomics, PSI-2, protein structure initiative; HET: MSE; 2.60A {Haloarcula marismortui atcc 43049}
Probab=21.73 E-value=68 Score=22.62 Aligned_cols=26 Identities=8% Similarity=0.316 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHcCCccccCC
Q psy1231 79 TVVRNQVLDKIVKIFKKHGAVTIDTP 104 (151)
Q Consensus 79 ~~~~~~I~~~i~~~f~~~Gy~~IeTP 104 (151)
...++.|.+...++|..+||..+..-
T Consensus 13 ~~~r~~Il~aA~~lf~~~G~~~~s~~ 38 (199)
T 3crj_A 13 SDQTEEIMQATYRALREHGYADLTIQ 38 (199)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTCCHH
T ss_pred hhHHHHHHHHHHHHHHHcCcccCCHH
Confidence 45689999999999999999876543
No 134
>2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3}
Probab=21.66 E-value=59 Score=22.57 Aligned_cols=22 Identities=23% Similarity=0.446 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHcCCccc
Q psy1231 79 TVVRNQVLDKIVKIFKKHGAVTI 101 (151)
Q Consensus 79 ~~~~~~I~~~i~~~f~~~Gy~~I 101 (151)
...++.|.+...++|..+||. +
T Consensus 14 ~~~r~~Il~aA~~lf~~~G~~-~ 35 (194)
T 2q24_A 14 QRNRDKILAAAVRVFSEEGLD-A 35 (194)
T ss_dssp --CHHHHHHHHHHHHHHHCTT-C
T ss_pred HHHHHHHHHHHHHHHHhcCcC-C
Confidence 345899999999999999996 5
No 135
>3f1b_A TETR-like transcriptional regulator; APC5888, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.40A {Rhodococcus}
Probab=21.64 E-value=70 Score=21.96 Aligned_cols=26 Identities=27% Similarity=0.397 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHcCCccccCC
Q psy1231 79 TVVRNQVLDKIVKIFKKHGAVTIDTP 104 (151)
Q Consensus 79 ~~~~~~I~~~i~~~f~~~Gy~~IeTP 104 (151)
...++.|.+...++|...||..+...
T Consensus 13 ~~~r~~Il~aa~~l~~~~G~~~~ti~ 38 (203)
T 3f1b_A 13 AVREQQMLDAAVDVFSDRGFHETSMD 38 (203)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTTCCHH
T ss_pred HHHHHHHHHHHHHHHHHcCcccccHH
Confidence 34588999999999999999876543
No 136
>2dg8_A Putative TETR-family transcriptional regulatory P; helix-turn-helix motif, gene regulation; 2.21A {Streptomyces coelicolor}
Probab=21.62 E-value=44 Score=23.33 Aligned_cols=24 Identities=13% Similarity=0.358 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHcCCccccC
Q psy1231 80 VVRNQVLDKIVKIFKKHGAVTIDT 103 (151)
Q Consensus 80 ~~~~~I~~~i~~~f~~~Gy~~IeT 103 (151)
..++.|.+...++|...||..+..
T Consensus 9 ~~r~~Il~aa~~l~~~~G~~~~ti 32 (193)
T 2dg8_A 9 QRRERILAATLDLIAEEGIARVSH 32 (193)
T ss_dssp THHHHHHHHHHHHHHHHCGGGCCH
T ss_pred hHHHHHHHHHHHHHHHhChhhccH
Confidence 578999999999999999987654
No 137
>3c2b_A Transcriptional regulator, TETR family; structural genomics, APC5923, PSI-2, PR structure initiative; 2.10A {Agrobacterium tumefaciens str}
Probab=21.60 E-value=62 Score=22.80 Aligned_cols=25 Identities=24% Similarity=0.452 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHcCCccccC
Q psy1231 79 TVVRNQVLDKIVKIFKKHGAVTIDT 103 (151)
Q Consensus 79 ~~~~~~I~~~i~~~f~~~Gy~~IeT 103 (151)
...++.|.+...++|..+||..+..
T Consensus 14 ~~~r~~Il~aA~~lf~~~G~~~~s~ 38 (221)
T 3c2b_A 14 SPRQNAVLDQALRLLVEGGEKALTT 38 (221)
T ss_dssp CHHHHHHHHHHHHHHHHHCGGGCCH
T ss_pred HHHHHHHHHHHHHHHHhCCcccCCH
Confidence 3568999999999999999987654
No 138
>3on4_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: MSE; 1.85A {Legionella pneumophila subsp}
Probab=21.55 E-value=53 Score=22.35 Aligned_cols=25 Identities=12% Similarity=0.206 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHcCCccccCC
Q psy1231 80 VVRNQVLDKIVKIFKKHGAVTIDTP 104 (151)
Q Consensus 80 ~~~~~I~~~i~~~f~~~Gy~~IeTP 104 (151)
..++.|.+...++|..+||..+..-
T Consensus 10 ~~r~~Il~aa~~l~~~~G~~~~t~~ 34 (191)
T 3on4_A 10 NTKERILAVAEALIQKDGYNAFSFK 34 (191)
T ss_dssp CHHHHHHHHHHHHHHHHCGGGCCHH
T ss_pred hHHHHHHHHHHHHHHHhCcccCCHH
Confidence 4689999999999999999976543
No 139
>3bru_A Regulatory protein, TETR family; structural genomics, APC88928, PSI-2, protein structur initiative; 2.30A {Rhodobacter sphaeroides 2}
Probab=21.52 E-value=69 Score=22.51 Aligned_cols=27 Identities=4% Similarity=0.218 Sum_probs=22.9
Q ss_pred hHHHHHHHHHHHHHHHHHcCCccccCC
Q psy1231 78 STVVRNQVLDKIVKIFKKHGAVTIDTP 104 (151)
Q Consensus 78 e~~~~~~I~~~i~~~f~~~Gy~~IeTP 104 (151)
....++.|.+...++|..+||..+..-
T Consensus 28 ~~~~r~~Il~aA~~l~~~~G~~~~t~~ 54 (222)
T 3bru_A 28 ASLAHQSLIRAGLEHLTEKGYSSVGVD 54 (222)
T ss_dssp GGGHHHHHHHHHHHHHHHSCTTTCCHH
T ss_pred hhhHHHHHHHHHHHHHHHcCCCcCcHH
Confidence 456799999999999999999876543
No 140
>3he0_A Transcriptional regulator, TETR family; ACRR, vibrio parahaemolytic structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.20A {Vibrio parahaemolyticus}
Probab=21.44 E-value=62 Score=22.18 Aligned_cols=26 Identities=15% Similarity=0.243 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHcCCccccCC
Q psy1231 79 TVVRNQVLDKIVKIFKKHGAVTIDTP 104 (151)
Q Consensus 79 ~~~~~~I~~~i~~~f~~~Gy~~IeTP 104 (151)
...++.|.+...++|..+||..+..-
T Consensus 10 ~~~r~~il~aa~~lf~~~G~~~~tv~ 35 (196)
T 3he0_A 10 VDKRDQILAAAEQLIAESGFQGLSMQ 35 (196)
T ss_dssp -CCHHHHHHHHHHHHHHHCTTTCCHH
T ss_pred hHHHHHHHHHHHHHHHHhCcccCCHH
Confidence 34588999999999999999977643
No 141
>3ppb_A Putative TETR family transcription regulator; DNA-binding, helix-turn-helix motif, HTH motif, DNA/RNA-BIND helical bundle fold; HET: MSE PG4; 2.10A {Shewanella loihica}
Probab=21.36 E-value=71 Score=21.71 Aligned_cols=24 Identities=17% Similarity=0.375 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHcCCccccC
Q psy1231 80 VVRNQVLDKIVKIFKKHGAVTIDT 103 (151)
Q Consensus 80 ~~~~~I~~~i~~~f~~~Gy~~IeT 103 (151)
..++.|.+...++|..+||..+..
T Consensus 9 ~~r~~Il~aa~~l~~~~G~~~~tv 32 (195)
T 3ppb_A 9 TKKQAILETALQLFVSQGFHGTST 32 (195)
T ss_dssp CHHHHHHHHHHHHHHHTCSTTSCH
T ss_pred hHHHHHHHHHHHHHHhcCcccCCH
Confidence 458899999999999999998754
No 142
>3f0c_A TETR-molecule A, transcriptional regulator; MCSG,PSI, SAD, structural genomics, protein structure initiative; 2.96A {Cytophaga hutchinsonii}
Probab=20.96 E-value=67 Score=22.47 Aligned_cols=24 Identities=13% Similarity=0.108 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHcCCccccC
Q psy1231 80 VVRNQVLDKIVKIFKKHGAVTIDT 103 (151)
Q Consensus 80 ~~~~~I~~~i~~~f~~~Gy~~IeT 103 (151)
..++.|.+...++|..+||..+..
T Consensus 11 ~~r~~Il~aA~~lf~~~G~~~~ti 34 (216)
T 3f0c_A 11 GKLELIINAAQKRFAHYGLCKTTM 34 (216)
T ss_dssp CHHHHHHHHHHHHHHHHCSSSCCH
T ss_pred HHHHHHHHHHHHHHHHcCCCcCCH
Confidence 468999999999999999987754
No 143
>3l4g_B Phenylalanyl-tRNA synthetase beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=20.95 E-value=83 Score=27.69 Aligned_cols=29 Identities=14% Similarity=0.015 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHcCCccccCCccccHH
Q psy1231 82 RNQVLDKIVKIFKKHGAVTIDTPIFELKE 110 (151)
Q Consensus 82 ~~~I~~~i~~~f~~~Gy~~IeTPv~E~~e 110 (151)
.+.+.+.+++.+...||.++.|+.|...+
T Consensus 393 ~~~~~~~ir~~l~~~Gf~Evitysf~s~~ 421 (589)
T 3l4g_B 393 LNKLTELLRHDMAAAGFTEALTFALCSQE 421 (589)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCCSEECHH
T ss_pred HHHHHHHHHHHHHHCCCEEEecCcccCHH
Confidence 45668889999999999999999998766
No 144
>1pb6_A Hypothetical transcriptional regulator YCDC; helix-loop-helix, dimer, structural genomics, PSI, protein structure initiative; 2.50A {Escherichia coli} PDB: 3loc_A*
Probab=20.88 E-value=74 Score=22.09 Aligned_cols=26 Identities=12% Similarity=0.230 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHHHHHHHHcCCccccC
Q psy1231 78 STVVRNQVLDKIVKIFKKHGAVTIDT 103 (151)
Q Consensus 78 e~~~~~~I~~~i~~~f~~~Gy~~IeT 103 (151)
....++.|.+...++|...||..+..
T Consensus 16 ~~~~r~~Il~aa~~l~~~~G~~~~s~ 41 (212)
T 1pb6_A 16 VSAKKKAILSAALDTFSQFGFHGTRL 41 (212)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTTCCH
T ss_pred hHHHHHHHHHHHHHHHHHcCcchhhH
Confidence 34678999999999999999988754
No 145
>2w53_A Repressor, SMet; antibiotic resistance, multi-drug efflux pump, transcription regulation, transcriptional repressor, DNA binding; 2.00A {Stenotrophomonas maltophilia} PDB: 3p9t_A*
Probab=20.79 E-value=63 Score=22.92 Aligned_cols=24 Identities=25% Similarity=0.437 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHcCCccccC
Q psy1231 80 VVRNQVLDKIVKIFKKHGAVTIDT 103 (151)
Q Consensus 80 ~~~~~I~~~i~~~f~~~Gy~~IeT 103 (151)
..++.|.+...++|..+||..+..
T Consensus 11 ~~r~~Il~aA~~lf~~~G~~~~s~ 34 (219)
T 2w53_A 11 ATREGILDAAEACFHEHGVARTTL 34 (219)
T ss_dssp CCHHHHHHHHHHHHHHHCTTTCCH
T ss_pred HHHHHHHHHHHHHHHHhCcccCCH
Confidence 358999999999999999987654
No 146
>2hyj_A Putative TETR-family transcriptional regulator; HTH DNA binding motif, structural genomics, PSI-2, Pro structure initiative; 2.19A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=20.76 E-value=61 Score=22.89 Aligned_cols=27 Identities=19% Similarity=0.308 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHHHHHHHHcCCccccCC
Q psy1231 78 STVVRNQVLDKIVKIFKKHGAVTIDTP 104 (151)
Q Consensus 78 e~~~~~~I~~~i~~~f~~~Gy~~IeTP 104 (151)
....++.|.+...++|...||.-+...
T Consensus 10 ~~~~r~~Il~aA~~lf~~~G~~~~s~~ 36 (200)
T 2hyj_A 10 AQATRGRILGRAAEIASEEGLDGITIG 36 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHCGGGCCHH
T ss_pred hhccHHHHHHHHHHHHHHcCcccCCHH
Confidence 456789999999999999999976543
No 147
>1r8i_A TRAC; VIRB5, helical bundle, structural protein; 3.00A {Escherichia coli} SCOP: a.8.7.1
Probab=20.72 E-value=51 Score=25.13 Aligned_cols=42 Identities=21% Similarity=0.197 Sum_probs=24.4
Q ss_pred hHHHHHHHHHHHHHhhchhhhcccccccCcc--cccCCC-ccccCChhhHH
Q psy1231 33 QIDEEVKKLLELKNQLKINDEANEDNSTHKF--ILKTPK-GTRDYGPDSTV 80 (151)
Q Consensus 33 ~I~~~V~kLl~LK~ql~~~~~~~~~~~~~~~--~~~~pk-GtrD~lP~e~~ 80 (151)
+++.-.+.|-++|.+|..+ .+.+.+ .+..|. .+++++|.+..
T Consensus 23 Ql~~~k~Ql~q~k~qy~sl------tG~r~~~~~l~~~~~~l~~~lp~~~~ 67 (213)
T 1r8i_A 23 QLEQLKSQLETQKNMYESM------AKTTNLGDLLGTSTNTLANNLPDNWK 67 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHH------HTTCCGGGSSSTTTSSCCCCCCCTTT
T ss_pred HHHHHHHHHHHHHHHHHHH------HCcccHHHHhcChHHHHHhhccccHH
Confidence 3444555566667777652 122222 356665 78999997643
No 148
>3gzi_A Transcriptional regulator, TETR family; TETR family transcriptional regulator, structural genomics, center for structural genomics, JCSG; 2.05A {Shewanella loihica pv-4}
Probab=20.53 E-value=73 Score=22.30 Aligned_cols=26 Identities=12% Similarity=0.190 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHHHHHHHHcCCccccC
Q psy1231 78 STVVRNQVLDKIVKIFKKHGAVTIDT 103 (151)
Q Consensus 78 e~~~~~~I~~~i~~~f~~~Gy~~IeT 103 (151)
....++.|.+...++|..+||..+..
T Consensus 15 ~~~~r~~Il~aA~~l~~~~G~~~~t~ 40 (218)
T 3gzi_A 15 DTQNRDKLILAARNLFIERPYAQVSI 40 (218)
T ss_dssp HHHHHHHHHHHHHHHHHTSCCSCCCH
T ss_pred hhHHHHHHHHHHHHHHHHCCCCcCCH
Confidence 45689999999999999999997654
No 149
>3hta_A EBRA repressor; TETR family, DNA binding protein, multidrug resistance, MULT binding protein, DNA-binding, transcription; 2.30A {Streptomyces lividans} PDB: 3hth_A* 3hti_A* 3htj_A* 3iuv_A
Probab=20.36 E-value=74 Score=22.81 Aligned_cols=25 Identities=12% Similarity=0.405 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHcCCccccC
Q psy1231 79 TVVRNQVLDKIVKIFKKHGAVTIDT 103 (151)
Q Consensus 79 ~~~~~~I~~~i~~~f~~~Gy~~IeT 103 (151)
...++.|.+...++|...||..+..
T Consensus 27 ~~~r~~Il~AA~~lf~~~G~~~~t~ 51 (217)
T 3hta_A 27 PERRQRIIDAAIRVVGQKGIAGLSH 51 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHTGGGCCH
T ss_pred hhHHHHHHHHHHHHHHHcCcccCCH
Confidence 3489999999999999999987654
No 150
>2gen_A Probable transcriptional regulator; APC6095, TETR family, structural genomics, PSI, protein structure initiative; 1.70A {Pseudomonas aeruginosa PAO1} SCOP: a.4.1.9 a.121.1.1
Probab=20.33 E-value=59 Score=22.82 Aligned_cols=24 Identities=17% Similarity=0.393 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHcCCccccC
Q psy1231 80 VVRNQVLDKIVKIFKKHGAVTIDT 103 (151)
Q Consensus 80 ~~~~~I~~~i~~~f~~~Gy~~IeT 103 (151)
..++.|.+...++|..+||..+..
T Consensus 7 ~~r~~Il~aA~~lf~~~G~~~ts~ 30 (197)
T 2gen_A 7 SRKDEILQAALACFSEHGVDATTI 30 (197)
T ss_dssp -CHHHHHHHHHHHHHHHCTTTCCH
T ss_pred HHHHHHHHHHHHHHHHcCcccCCH
Confidence 458899999999999999987654
No 151
>1vi0_A Transcriptional regulator; structural genomics; HET: MSE DCC; 1.65A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=20.19 E-value=64 Score=22.88 Aligned_cols=24 Identities=17% Similarity=0.235 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHcCCccccC
Q psy1231 80 VVRNQVLDKIVKIFKKHGAVTIDT 103 (151)
Q Consensus 80 ~~~~~I~~~i~~~f~~~Gy~~IeT 103 (151)
..++.|.+...++|...||..+..
T Consensus 8 ~~r~~Il~aA~~lf~~~Gy~~~s~ 31 (206)
T 1vi0_A 8 PKYMQIIDAAVEVIAENGYHQSQV 31 (206)
T ss_dssp CHHHHHHHHHHHHHHHHCGGGCCH
T ss_pred HHHHHHHHHHHHHHHHhCcccCCH
Confidence 468999999999999999987654
No 152
>2k5e_A Uncharacterized protein; helix protein, structural genomic, structural genomics, PSI-2, protein structure initiative; NMR {Methanococcus jannaschii}
Probab=20.14 E-value=86 Score=19.88 Aligned_cols=32 Identities=13% Similarity=-0.016 Sum_probs=23.4
Q ss_pred HHHHHHHHcCCccccCCc--cccHHhhhcccCCc
Q psy1231 88 KIVKIFKKHGAVTIDTPI--FELKEVLTGKYGVY 119 (151)
Q Consensus 88 ~i~~~f~~~Gy~~IeTPv--~E~~evf~~~~Ge~ 119 (151)
...++|.+||+..+-+|. ++..+--....|-|
T Consensus 20 ~~~~vf~~~G~~c~~C~~a~~~tL~~Aa~~~gid 53 (73)
T 2k5e_A 20 GVAGVLRSYNLGCIGCMGAQNESLEQGANAHGLN 53 (73)
T ss_dssp HHHHHHHHTTGGGGGTTTGGGSBHHHHHHHTTCC
T ss_pred HHHHHHHHcCCCCCCCCccccccHHHHHHHcCCC
Confidence 357899999999999999 76665444444544
No 153
>3mnl_A KSTR, transcriptional regulatory protein (probably TETR; TETR family of transcriptional regulator, all-helical; 1.80A {Mycobacterium tuberculosis}
Probab=20.09 E-value=44 Score=23.11 Aligned_cols=28 Identities=21% Similarity=0.292 Sum_probs=23.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHcCCccccC
Q psy1231 76 PDSTVVRNQVLDKIVKIFKKHGAVTIDT 103 (151)
Q Consensus 76 P~e~~~~~~I~~~i~~~f~~~Gy~~IeT 103 (151)
+.....++.|.+...++|..+||..+..
T Consensus 16 ~~~~~~r~~Il~aA~~l~~~~G~~~~t~ 43 (203)
T 3mnl_A 16 EAQRERRKRILDATMAIASKGGYEAVQM 43 (203)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCH
T ss_pred cCchHHHHHHHHHHHHHHHHcCCccCCH
Confidence 4456779999999999999999987654
Done!