RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1231
(151 letters)
>1x59_A Histidyl-tRNA synthetase; hisrs, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 73
Score = 79.0 bits (194), Expect = 1e-20
Identities = 35/74 (47%), Positives = 42/74 (56%), Gaps = 6/74 (8%)
Query: 2 SSAAPMADIQESIKAQGDVVRKLKSSKAPKEQIDEEVKKLLELKNQLKINDEANEDNSTH 61
S A A ++E +K QG+ VR LK KA E I+EEV KLL+LK QL D S
Sbjct: 6 SGMAERAALEELVKLQGERVRGLKQQKASAELIEEEVAKLLKLKAQLG------PDESKQ 59
Query: 62 KFILKTPKGTRDYG 75
KF+LKTPK G
Sbjct: 60 KFVLKTPKSGPSSG 73
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase,
ligase, structural G medical structural genomics of
pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi}
PDB: 3hrk_A* 3hri_A
Length = 456
Score = 80.8 bits (200), Expect = 7e-19
Identities = 15/71 (21%), Positives = 27/71 (38%)
Query: 47 QLKINDEANEDNSTHKFILKTPKGTRDYGPDSTVVRNQVLDKIVKIFKKHGAVTIDTPIF 106
L+ + + + +G RD+ P++ R + D K G D P+
Sbjct: 11 TLEAQTQGPGSMQKNMVETEPVQGCRDFPPEAMRCRRHLFDVFHATAKTFGFEEYDAPVL 70
Query: 107 ELKEVLTGKYG 117
E +E+ K G
Sbjct: 71 ESEELYIRKAG 81
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase,
structural genomics, PSI- nostoc, protein structure
initiative; 2.70A {Nostoc SP}
Length = 465
Score = 78.9 bits (195), Expect = 3e-18
Identities = 17/57 (29%), Positives = 27/57 (47%)
Query: 61 HKFILKTPKGTRDYGPDSTVVRNQVLDKIVKIFKKHGAVTIDTPIFELKEVLTGKYG 117
K TP G ++ P + +LD I ++++ +G I+TP E EVL K
Sbjct: 8 DKINFSTPSGFPEFLPSEKRLELYLLDTIRRVYESYGFTPIETPAVERLEVLQAKGN 64
>3rac_A Histidine-tRNA ligase; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, PSI-BIO; 2.30A
{Alicyclobacillus acidocaldarius subsp}
Length = 373
Score = 74.3 bits (183), Expect = 1e-16
Identities = 11/56 (19%), Positives = 21/56 (37%)
Query: 62 KFILKTPKGTRDYGPDSTVVRNQVLDKIVKIFKKHGAVTIDTPIFELKEVLTGKYG 117
+ P G +D PD R V +++ + G + + +FE + L
Sbjct: 20 RGFADRPPGMQDGYPDFAKRRRAVETRLLSFVEDAGYEPVTSGLFEYVDTLLRARS 75
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A
{Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1
Length = 434
Score = 66.1 bits (162), Expect = 1e-13
Identities = 12/56 (21%), Positives = 23/56 (41%)
Query: 62 KFILKTPKGTRDYGPDSTVVRNQVLDKIVKIFKKHGAVTIDTPIFELKEVLTGKYG 117
+ ++ +G RD+ P+ V + + + G ID P E ++ K G
Sbjct: 3 RLQIEKIRGFRDFYPEDMDVEKFIFKTAEEAAEAFGFRRIDFPSLEYLDLYRIKSG 58
>1fyj_A Multifunctional aminoacyl-tRNA synthetase; helix-turn-helix,
ligase; NMR {Homo sapiens} SCOP: a.16.1.3
Length = 57
Score = 60.3 bits (146), Expect = 2e-13
Identities = 21/42 (50%), Positives = 28/42 (66%)
Query: 8 ADIQESIKAQGDVVRKLKSSKAPKEQIDEEVKKLLELKNQLK 49
+ + QGDVVR+LK+ KAPKE +D VK+LL LK + K
Sbjct: 3 LVLYNRVAVQGDVVRELKAKKAPKEDVDAAVKQLLSLKAEYK 44
>1d2d_A TRNA synthetase, tRNA ligase; tRNA synthetase (ligase), protein
transcription; NMR {Cricetulus griseus} SCOP: a.16.1.3
PDB: 1r1b_A
Length = 59
Score = 58.8 bits (142), Expect = 8e-13
Identities = 21/40 (52%), Positives = 29/40 (72%)
Query: 10 IQESIKAQGDVVRKLKSSKAPKEQIDEEVKKLLELKNQLK 49
+ + I AQG+VVRKLK+ KAPK ++ E V+ LL LK + K
Sbjct: 2 VYDKIAAQGEVVRKLKAEKAPKAKVTEAVECLLSLKAEYK 41
>2djv_A Methionyl-tRNA synthetase; EC 6.1.1.10, WHEP-TRS domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 79
Score = 58.6 bits (141), Expect = 2e-12
Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 2 SSAAPMADIQESIKAQGDVVRKLKSSKAPKEQIDEEVKKLLELKNQLK 49
+ + + + + QG++VR+LK+ KA K ++ EV KLL+LK QL
Sbjct: 10 AKPQQIQALMDEVTKQGNIVRELKAQKADKNEVAAEVAKLLDLKKQLA 57
>2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP,
aminoacyl-tRNA synthetase, ATP-binding,
charcot-marie-tooth disease, disease mutation; HET: B4P;
2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A*
2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A
Length = 693
Score = 60.1 bits (145), Expect = 1e-11
Identities = 31/126 (24%), Positives = 57/126 (45%), Gaps = 20/126 (15%)
Query: 7 MADIQESIKAQGDVVRKLKSSKAPKEQIDEEVKKLLELKNQLKINDEA---NEDNSTHKF 63
+A ++ +++ QGD+VRKLK KAP+ +D+ V +L K L+ + A +D
Sbjct: 10 LAPLRLAVRQQGDLVRKLKEDKAPQVDVDKAVAELKARKRVLEAKELALQPKDDIVDRAK 69
Query: 64 ILKTPK----------------GTRDYGPDSTVVRNQVLDKIVKIF-KKHGAVTIDTPIF 106
+ T K G D+GP ++N ++ + F ++ + ID +
Sbjct: 70 MEDTLKRRFFYDQAFAIYGGVSGLYDFGPVGCALKNNIIQTWRQHFIQEEQILEIDCTML 129
Query: 107 ELKEVL 112
+ VL
Sbjct: 130 TPEPVL 135
>3od1_A ATP phosphoribosyltransferase regulatory subunit; structural
genomics, PSI-2, protein structure initiative; 1.97A
{Bacillus halodurans}
Length = 400
Score = 58.1 bits (141), Expect = 6e-11
Identities = 13/57 (22%), Positives = 24/57 (42%)
Query: 62 KFILKTPKGTRDYGPDSTVVRNQVLDKIVKIFKKHGAVTIDTPIFELKEVLTGKYGV 118
F+ + P G RD P+ + + D++ + G I+TP E E + +
Sbjct: 7 PFMFEKPFGMRDTLPEWYKTKKNICDQMTEEINLWGYDMIETPTLEYYETVGVVSAI 63
>3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B
O-methyl tyrosine binding, magnesium binding,
aminoacylatio esterification; HET: 0A1 ANP; 1.75A
{Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A*
2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A*
Length = 290
Score = 54.5 bits (131), Expect = 9e-10
Identities = 18/98 (18%), Positives = 39/98 (39%), Gaps = 3/98 (3%)
Query: 18 GDVVRKLKSSKAPK--EQIDEEVKKLLELKNQLKINDEANEDNSTHKFILKTPKGTRD-Y 74
G V R + AP + + ++ LL K+++ +N + + + K + Y
Sbjct: 12 GLVPRGSHGASAPALTKSQTDRLEVLLNPKDEISLNSGKPFRELESELLSRRKKDLQQIY 71
Query: 75 GPDSTVVRNQVLDKIVKIFKKHGAVTIDTPIFELKEVL 112
+ ++ +I + F G + I +PI E +
Sbjct: 72 AEERENYLGKLEREITRFFVDRGFLEIKSPILIPLEYI 109
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann
fold catalytical domain, recognition domain, bound
Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP:
a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A*
2quk_A
Length = 477
Score = 51.9 bits (124), Expect = 9e-09
Identities = 34/126 (26%), Positives = 55/126 (43%), Gaps = 16/126 (12%)
Query: 2 SSAAPMADIQESIKAQGDVVRKLKSSKAPKEQIDEEVKKLLELKNQLKINDEANEDNSTH 61
A+ + ++ SI QG++VR LK+ A K++ID VK L+ LK K +
Sbjct: 5 EPASLL-ELFNSIATQGELVRSLKAGNASKDEIDSAVKMLVSLKMSYKAAAGEDYKADCP 63
Query: 62 KFILKTPKGTRDYGPDSTVVRNQVLD---------KIV---KIFKKHGAVTIDTPIFELK 109
P T ++GPD+T +D K + K+ + G+ ID +
Sbjct: 64 P---GNPAPTSNHGPDATEAEEDFVDPWTVQTSSAKGIDYDKLIVRFGSSKIDKELINRI 120
Query: 110 EVLTGK 115
E TG+
Sbjct: 121 ERATGQ 126
>1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT,
histidine biosynthesis, hiszg, alloste evolution; 2.90A
{Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A*
Length = 344
Score = 46.1 bits (110), Expect = 8e-07
Identities = 9/67 (13%), Positives = 23/67 (34%)
Query: 51 NDEANEDNSTHKFILKTPKGTRDYGPDSTVVRNQVLDKIVKIFKKHGAVTIDTPIFELKE 110
+ + + K P+ + + + Q+ ++ K+F + P FE +
Sbjct: 8 HHHGSIEGRMEKINYLLPEESAEMTLNQVKSLRQIEGRLRKLFSLKNYQEVMPPSFEYTQ 67
Query: 111 VLTGKYG 117
+ T
Sbjct: 68 LYTALES 74
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet,
ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1
d.104.1.1
Length = 420
Score = 44.5 bits (106), Expect = 3e-06
Identities = 12/48 (25%), Positives = 27/48 (56%)
Query: 64 ILKTPKGTRDYGPDSTVVRNQVLDKIVKIFKKHGAVTIDTPIFELKEV 111
++K P+GT+D P+ + + +++ ++ + I TPIFE ++
Sbjct: 1 MIKIPRGTQDILPEDSKKWRYIENQLDELMTFYNYKEIRTPIFESTDL 48
>1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP
+ L-histidine tRNA(His)-> AMP + PPI +
L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP:
c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A
Length = 421
Score = 43.7 bits (104), Expect = 6e-06
Identities = 12/47 (25%), Positives = 24/47 (51%)
Query: 65 LKTPKGTRDYGPDSTVVRNQVLDKIVKIFKKHGAVTIDTPIFELKEV 111
+ +GT+D + +++ K+ + GA+ + TPIFE +V
Sbjct: 3 ARAVRGTKDLFGKELRMHQRIVATARKVLEAAGALELVTPIFEETQV 49
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate),
aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A
{Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A*
1kmn_A* 2el9_A*
Length = 423
Score = 42.9 bits (102), Expect = 9e-06
Identities = 10/47 (21%), Positives = 20/47 (42%)
Query: 65 LKTPKGTRDYGPDSTVVRNQVLDKIVKIFKKHGAVTIDTPIFELKEV 111
++ +G DY P T + ++ + + +G I PI E +
Sbjct: 4 IQAIRGMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPL 50
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for
infectious disease, S aminoacylation, tRNA activation,
charged tRNA; HET: HIS; 2.65A {Burkholderia
thailandensis}
Length = 467
Score = 42.6 bits (101), Expect = 1e-05
Identities = 11/47 (23%), Positives = 17/47 (36%)
Query: 65 LKTPKGTRDYGPDSTVVRNQVLDKIVKIFKKHGAVTIDTPIFELKEV 111
L KG D P + + + + +G I TPI E +
Sbjct: 32 LTGVKGMNDILPQDAGLWEFFEATVKSLLRAYGYQNIRTPIVEHTPL 78
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 701
Score = 34.6 bits (79), Expect = 0.008
Identities = 10/103 (9%), Positives = 29/103 (28%), Gaps = 4/103 (3%)
Query: 6 PMADIQESIKAQGDVVRKLKSSKAPKEQIDEEVKKL-LELKNQLKINDEANEDNSTHKFI 64
P+ D E+++ ++ + I +E + + D +
Sbjct: 66 PVNDTIENLR---QAYLRMGFEEYINPVIVDERDIYKQFGPEAMAVLDRCFYLAGLPRPD 122
Query: 65 LKTPKGTRDYGPDSTVVRNQVLDKIVKIFKKHGAVTIDTPIFE 107
+ + ++ + + KI + T+D
Sbjct: 123 VGLSDEKISQIEKLGIKVSEHKESLQKILHGYKKGTLDGDDLV 165
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 665
Score = 33.8 bits (77), Expect = 0.018
Identities = 10/103 (9%), Positives = 29/103 (28%), Gaps = 4/103 (3%)
Query: 6 PMADIQESIKAQGDVVRKLKSSKAPKEQIDEEVKKL-LELKNQLKINDEANEDNSTHKFI 64
P+ D E+++ ++ + I +E + + D +
Sbjct: 66 PVNDTIENLR---QAYLRMGFEEYINPVIVDERDIYKQFGPEAMAVLDRCFYLAGLPRPD 122
Query: 65 LKTPKGTRDYGPDSTVVRNQVLDKIVKIFKKHGAVTIDTPIFE 107
+ + ++ + + KI + T+D
Sbjct: 123 VGLSDEKISQIEKLGIKVSEHKESLQKILHGYKKGTLDGDDLV 165
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 648
Score = 33.4 bits (76), Expect = 0.020
Identities = 10/103 (9%), Positives = 29/103 (28%), Gaps = 4/103 (3%)
Query: 6 PMADIQESIKAQGDVVRKLKSSKAPKEQIDEEVKKL-LELKNQLKINDEANEDNSTHKFI 64
P+ D E+++ ++ + I +E + + D +
Sbjct: 66 PVNDTIENLR---QAYLRMGFEEYINPVIVDERDIYKQFGPEAMAVLDRCFYLAGLPRPD 122
Query: 65 LKTPKGTRDYGPDSTVVRNQVLDKIVKIFKKHGAVTIDTPIFE 107
+ + ++ + + KI + T+D
Sbjct: 123 VGLSDEKISQIEKLGIKVSEHKESLQKILHGYKKGTLDGDDLV 165
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.2 bits (72), Expect = 0.033
Identities = 9/47 (19%), Positives = 14/47 (29%), Gaps = 28/47 (59%)
Query: 32 EQIDEEVKKLLELKNQLKINDEANEDNSTHKFILKTPKGTRDYGPDS 78
E+ + +KKL + LK+ Y DS
Sbjct: 18 EK--QALKKL---QASLKL-----------------------YADDS 36
Score = 27.6 bits (60), Expect = 1.4
Identities = 8/36 (22%), Positives = 16/36 (44%), Gaps = 14/36 (38%)
Query: 11 QESIKAQGDVVRKLKSS-K------APKEQIDEEVK 39
++++K KL++S K AP I ++
Sbjct: 19 KQALK-------KLQASLKLYADDSAPALAIKATME 47
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 685
Score = 32.6 bits (74), Expect = 0.035
Identities = 10/103 (9%), Positives = 29/103 (28%), Gaps = 4/103 (3%)
Query: 6 PMADIQESIKAQGDVVRKLKSSKAPKEQIDEEVKKL-LELKNQLKINDEANEDNSTHKFI 64
P+ D E+++ ++ + I +E + + D +
Sbjct: 66 PVNDTIENLR---QAYLRMGFEEYINPVIVDERDIYKQFGPEAMAVLDRCFYLAGLPRPD 122
Query: 65 LKTPKGTRDYGPDSTVVRNQVLDKIVKIFKKHGAVTIDTPIFE 107
+ + ++ + + KI + T+D
Sbjct: 123 VGLSDEKISQIEKLGIKVSEHKESLQKILHGYKKGTLDGDDLV 165
>3bmx_A Uncharacterized lipoprotein YBBD; beta-N-hexosaminidase, TIM
barrel, glycos hydrolase, membrane, palmitate; HET: P4G;
1.40A {Bacillus subtilis} PDB: 3cqm_A* 3nvd_A* 3lk6_A*
Length = 642
Score = 31.4 bits (71), Expect = 0.098
Identities = 10/52 (19%), Positives = 27/52 (51%)
Query: 8 ADIQESIKAQGDVVRKLKSSKAPKEQIDEEVKKLLELKNQLKINDEANEDNS 59
+ Q+ + + +K+ P++QI+ V++++ LK + + N D++
Sbjct: 356 KEEQKFARVIQALKEAVKNGDIPEQQINNSVERIISLKIKRGMYPARNSDST 407
>3sql_A Glycosyl hydrolase family 3; structural genomics, PSI-biology,
midwest center for structu genomics, MCSG, TIM-barrel,
alpha-beta-alpha sandwich; HET: MSE; 2.25A
{Synechococcus SP} PDB: 3sqm_A*
Length = 535
Score = 31.3 bits (71), Expect = 0.098
Identities = 8/51 (15%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Query: 9 DIQESIKAQGDVVRKLKSSKAPKEQIDEEVKKLLELKNQLKINDEANEDNS 59
D+ +I A + +K+ + + +I E V+++ + K ++ +
Sbjct: 313 DVDGAIIA---IETAIKTGQLSESRIYESVERIWQAKQKILTATPSTFPQG 360
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.8 bits (66), Expect = 0.41
Identities = 10/60 (16%), Positives = 23/60 (38%), Gaps = 2/60 (3%)
Query: 19 DVVRKLKSSKAPKEQIDEEVKKLLELKNQLKINDEANEDNSTHKFILKTPKGTRDYGPDS 78
VV KL ++Q E + + L++ + + + H+ I+ + + D
Sbjct: 406 VVVNKLHKYSLVEKQPKESTISIPSI--YLELKVKLENEYALHRSIVDHYNIPKTFDSDD 463
Score = 26.4 bits (57), Expect = 6.0
Identities = 19/149 (12%), Positives = 40/149 (26%), Gaps = 35/149 (23%)
Query: 9 DIQESIKAQGDVVRKLKSSKAPKEQIDEEVKKLLELKNQLKINDEANEDNSTHKFILK-- 66
Q + + +EVK LL + D E +T+ L
Sbjct: 274 FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSII 333
Query: 67 ---------TPKGTRDYGPD--STVVRN--QVLD--------KIVKIFKKHGAVTIDTPI 105
T + D +T++ + VL+ + +F I
Sbjct: 334 AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPP------SAHI 387
Query: 106 FELKEVLTGKYGVYWTGYSTAVGFLMIHS 134
+L + W + ++++
Sbjct: 388 PT--ILL----SLIWFDVIKSDVMVVVNK 410
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding
protein; structural genomics, NPPSFA; 1.94A {Pyrococcus
horikoshii}
Length = 362
Score = 28.3 bits (64), Expect = 0.88
Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 3/29 (10%)
Query: 24 LKSSKAPKEQIDEEVK---KLLELKNQLK 49
L+ KAP+E+ID++V+ K+L + L
Sbjct: 100 LELRKAPREEIDKKVREVAKMLHIDKLLN 128
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta
motif, beta sandwich, ligand binding protein; 1.90A
{Alicyclobacillus acidocaldarius}
Length = 355
Score = 28.4 bits (64), Expect = 0.94
Identities = 7/21 (33%), Positives = 14/21 (66%)
Query: 24 LKSSKAPKEQIDEEVKKLLEL 44
L+ + PK+++D V++LL
Sbjct: 112 LREKRVPKDEMDARVRELLRF 132
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha
and beta proteins (A/B) TM0421, structural genomics,
NPPSFA; 2.11A {Thermotoga maritima}
Length = 359
Score = 28.3 bits (64), Expect = 1.0
Identities = 6/29 (20%), Positives = 16/29 (55%), Gaps = 3/29 (10%)
Query: 24 LKSSKAPKEQIDEEVK---KLLELKNQLK 49
L++ + K+++++ V + L + N L
Sbjct: 100 LRARRISKDEVEKRVVEIARKLLIDNLLD 128
>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for
structural genomics, JCSG, prote structure initiative,
PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4}
Length = 444
Score = 28.1 bits (63), Expect = 1.1
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 1 MSSAAPMADIQESIKAQGDVVRKLKSSK 28
MS AA + + IK G+VVR+L +K
Sbjct: 417 MSIAADEQTLIDGIKVIGEVVRELYDNK 444
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold,
coiled coil, riken structural genomics/proteomics
initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus}
SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A*
1iyw_A
Length = 862
Score = 28.3 bits (64), Expect = 1.2
Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 7/42 (16%)
Query: 15 KAQGDVVR---KLKS----SKAPKEQIDEEVKKLLELKNQLK 49
+ R KL S KAPKE ++ E +L E Q +
Sbjct: 811 ELLALAERSQRKLASPGFREKAPKEVVEAEEARLKENLEQAE 852
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase,
ATP-binding cassette, ATPase, transport protein; 1.45A
{Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB:
1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Length = 353
Score = 28.0 bits (63), Expect = 1.2
Identities = 9/29 (31%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
Query: 24 LKSSKAPKEQIDEEVK---KLLELKNQLK 49
L + K KE+I + V+ K+L++ + L
Sbjct: 107 LTNMKMSKEEIRKRVEEVAKILDIHHVLN 135
>1bby_A RAP30; average structure transcription regulation, DNA- binding
domain, transcription; NMR {Homo sapiens} SCOP: a.4.5.15
PDB: 2bby_A
Length = 69
Score = 26.3 bits (58), Expect = 1.5
Identities = 11/38 (28%), Positives = 17/38 (44%), Gaps = 7/38 (18%)
Query: 82 RNQVLDKIVKIFKKHGAVTIDT-------PIFELKEVL 112
+ VLD + F+KH + P+ LKE+L
Sbjct: 6 KQHVLDMLFSAFEKHQYYNLKDLVDITKQPVVYLKEIL 43
>3cmq_A Phenylalanyl-tRNA synthetase, mitochondrial; classii aarss fold,
RRM domain, RNA recogntion, aminoacyl-tRNA synthetase,
ATP-binding, ligase; HET: FA5; 2.20A {Homo sapiens} PDB:
3hfv_A* 3teg_A* 3tup_A
Length = 415
Score = 27.5 bits (61), Expect = 1.7
Identities = 12/82 (14%), Positives = 29/82 (35%), Gaps = 5/82 (6%)
Query: 29 APKEQIDEEVKKLLELKNQLKINDEANEDNSTHKFILKTPKGTRDYGPDSTVVRNQVLDK 88
A + ++EL + D+ + N T + +L + + ++
Sbjct: 2 AAECATQRAPGSVVELLGKSYPQDDHS--NLT-RKVLTRVGRNLHNQQHHPL--WLIKER 56
Query: 89 IVKIFKKHGAVTIDTPIFELKE 110
+ + F K TP+F + +
Sbjct: 57 VKEHFYKQYVGRFGTPLFSVYD 78
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I
ABC type importer, methionine uptake transporter,
membrane protein; HET: ADP; 2.90A {Escherichia coli}
PDB: 3tuj_C 3tuz_C* 3dhw_C
Length = 366
Score = 27.7 bits (62), Expect = 1.7
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 24 LKSSKAPKEQIDEEVKKLLEL 44
L+ PK+++ V +LL L
Sbjct: 130 LELDNTPKDEVKRRVTELLSL 150
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active
transport, sugar uptake and regulation, transport
protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3
b.40.6.3 c.37.1.12 PDB: 1vci_A*
Length = 372
Score = 27.6 bits (62), Expect = 1.8
Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 3/29 (10%)
Query: 24 LKSSKAPKEQIDEEVK---KLLELKNQLK 49
LK K PK++ID+ V+ +LL+++ L
Sbjct: 108 LKIKKFPKDEIDKRVRWAAELLQIEELLN 136
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport,
maltose uptake and regulation, sugar binding protein;
1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3
c.37.1.12 PDB: 2d62_A
Length = 372
Score = 27.6 bits (62), Expect = 1.9
Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
Query: 24 LKSSKAPKEQIDEEVK---KLLELKNQLK 49
LK K P+++ID+ V+ +LL L L
Sbjct: 106 LKLRKVPRQEIDQRVREVAELLGLTELLN 134
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken
structural genomics/proteom initiative, RSGI, structural
genomics, ligase; HET: 4AD; 1.45A {Pyrococcus
horikoshii} PDB: 1x55_A* 1x56_A
Length = 434
Score = 27.5 bits (62), Expect = 2.1
Identities = 5/26 (19%), Positives = 10/26 (38%)
Query: 81 VRNQVLDKIVKIFKKHGAVTIDTPIF 106
V+ ++ + K G + PI
Sbjct: 137 VKETLIMAAREWLLKDGWHEVFPPIL 162
>3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase,
ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A
2zni_A
Length = 288
Score = 27.1 bits (60), Expect = 2.1
Identities = 14/97 (14%), Positives = 28/97 (28%), Gaps = 10/97 (10%)
Query: 36 EEVKK--LLELKNQLK---INDEANEDNSTHKFILKTPKGTRD----YGPDSTVVRNQVL 86
+ + L QL+ + + + +G R ++
Sbjct: 18 QYQRLKELNASGEQLEMGFSDALSRDRAFQGIEHQLMSQGKRHLEQLRTVKHRPALLELE 77
Query: 87 DKIVKIFKKHGAVTIDTPIFELKEVLTGKYGVYWTGY 123
+K+ K + G V + TP K L K +
Sbjct: 78 EKLAKALHQQGFVQVVTPTIITKSALA-KMTIGEDHP 113
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding
domain, ABC motor domain, ferric iron transport, cell
inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Length = 359
Score = 27.1 bits (61), Expect = 2.4
Identities = 6/21 (28%), Positives = 11/21 (52%)
Query: 24 LKSSKAPKEQIDEEVKKLLEL 44
L + K Q + ++ +LEL
Sbjct: 105 LGNGKGRTAQERQRIEAMLEL 125
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding,
protein biosynthesis; HET: NSS; 1.90A {Brugia malayi}
PDB: 2xti_A*
Length = 435
Score = 27.2 bits (61), Expect = 2.4
Identities = 5/26 (19%), Positives = 9/26 (34%)
Query: 81 VRNQVLDKIVKIFKKHGAVTIDTPIF 106
+R + + F G V + P
Sbjct: 134 LRAAATRAMREHFYNAGYVEVAPPTL 159
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral
membrane protein, ATPase, ABC transporter, membrane
transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia
coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A*
3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Length = 381
Score = 27.1 bits (61), Expect = 2.5
Identities = 10/29 (34%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
Query: 24 LKSSKAPKEQIDEEVK---KLLELKNQLK 49
LK + A KE I++ V ++L+L + L
Sbjct: 100 LKLAGAKKEVINQRVNQVAEVLQLAHLLD 128
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA
synthetase, tRNA ligase, AARS, translation, ATP-binding,
nucleotide-binding; HET: 4AD; 2.83A {Entamoeba
histolytica} PDB: 3m4q_A
Length = 456
Score = 27.2 bits (61), Expect = 2.7
Identities = 4/26 (15%), Positives = 10/26 (38%)
Query: 81 VRNQVLDKIVKIFKKHGAVTIDTPIF 106
+R+++ K + + I P
Sbjct: 158 LRSEIQWYFRKYYHDNHFTEIQPPTI 183
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO
ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A*
3nen_A 1b8a_A*
Length = 438
Score = 26.4 bits (59), Expect = 4.1
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 81 VRNQVLDKIVKIFKKHGAVTIDTPIF 106
+R+ V + F ++G + I TP
Sbjct: 139 IRSSVFKAVRDFFHENGFIEIHTPKI 164
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system,
helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP;
2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Length = 1038
Score = 26.4 bits (58), Expect = 4.6
Identities = 11/71 (15%), Positives = 22/71 (30%)
Query: 25 KSSKAPKEQIDEEVKKLLELKNQLKINDEANEDNSTHKFILKTPKGTRDYGPDSTVVRNQ 84
+ + + I EE K ++ + + + +T P +
Sbjct: 960 EQQREAEALIKEENLNEDAAKRYIRTSLKREYATENGTELNETLPKLSPLNPQYKTKKQA 1019
Query: 85 VLDKIVKIFKK 95
V KIV +K
Sbjct: 1020 VFQKIVSFIEK 1030
>3gin_A Sodium/calcium exchanger 1; CBD1, CBD2, NCX, calcium binding domain
1, antiport, calcium transport, calmodulin-binding, cell
membrane; 2.40A {Canis lupus familiaris} PDB: 2dpk_A*
2fws_A
Length = 160
Score = 26.0 bits (57), Expect = 4.8
Identities = 14/65 (21%), Positives = 22/65 (33%), Gaps = 4/65 (6%)
Query: 50 INDEANEDNSTHKFILKTPKGTRDYGPDSTVVRNQVLDKIVKIFKKHGAVTI----DTPI 105
I+D+ E++ L K + + D + N V VTI I
Sbjct: 96 IDDDIFEEDKNFLVHLSNVKVSSEASEDGILEANHVSALACLGSPSTATVTIFDDDHAGI 155
Query: 106 FELKE 110
F +E
Sbjct: 156 FTFEE 160
>1vq8_K 50S ribosomal protein L14P; ribosome 50S, protein-protein complex,
RNA-RNA complex, PROT complex, peptidyl transferase
reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A
{Haloarcula marismortui} SCOP: b.39.1.1 PDB: 1vq4_K*
1vq5_K* 1vq6_K* 1vq7_K* 1s72_K* 1vq9_K* 1vqk_K* 1vql_K*
1vqm_K* 1vqn_K* 1vqo_K* 1vqp_K* 1yhq_K* 1yi2_K* 1yij_K*
1yit_K* 1yj9_K* 1yjn_K* 1yjw_K* 2otj_K* ...
Length = 132
Score = 25.5 bits (55), Expect = 5.8
Identities = 13/79 (16%), Positives = 28/79 (35%), Gaps = 8/79 (10%)
Query: 18 GDVVRKLKSSKAPKEQIDEEVKKLLELKNQLKINDEA---NEDNSTHKFILK-TPKGTRD 73
GD + + P+ + ++ + ++ D EDN+ P+GT
Sbjct: 50 GDKITVSVTKGTPEMRRQVLEAVVVRQRKPIRRPDGTRVKFEDNAAVIVDENEDPRGTEL 109
Query: 74 YGPDSTVVRNQVLDKIVKI 92
GP + +V + +
Sbjct: 110 KGP----IAREVAQRFGSV 124
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics,
PSI, protein structure initiative, southeast COLL for
structural genomics; 1.65A {Pyrococcus furiosus} SCOP:
d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A*
3rl6_A*
Length = 294
Score = 26.0 bits (58), Expect = 5.9
Identities = 5/25 (20%), Positives = 12/25 (48%)
Query: 81 VRNQVLDKIVKIFKKHGAVTIDTPI 105
++ ++L+ + F K G + I
Sbjct: 17 IQTKILEYMTDFFVKEGFKWLLPVI 41
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE;
2.30A {Sulfolobus tokodaii}
Length = 429
Score = 26.0 bits (58), Expect = 6.6
Identities = 6/26 (23%), Positives = 11/26 (42%)
Query: 81 VRNQVLDKIVKIFKKHGAVTIDTPIF 106
+++ L + K G + I TP
Sbjct: 136 IQSLALKAFRETLYKEGFIEIFTPKI 161
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus
thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A*
Length = 422
Score = 25.6 bits (57), Expect = 7.8
Identities = 4/26 (15%), Positives = 9/26 (34%)
Query: 81 VRNQVLDKIVKIFKKHGAVTIDTPIF 106
V+ ++ + + I TP
Sbjct: 127 VQAALVRGFRRYLDRQDFTEIFTPKV 152
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic
dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP;
2.27A {Mus musculus}
Length = 536
Score = 25.4 bits (56), Expect = 9.9
Identities = 6/47 (12%), Positives = 19/47 (40%)
Query: 11 QESIKAQGDVVRKLKSSKAPKEQIDEEVKKLLELKNQLKINDEANED 57
E + + + + +K++ L+N+L+ ++ +D
Sbjct: 152 YEIVNRASLAAGPMVKWAIAQLNYADMLKRVEPLRNELQKLEDDAKD 198
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.313 0.131 0.379
Gapped
Lambda K H
0.267 0.0747 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,227,498
Number of extensions: 124650
Number of successful extensions: 405
Number of sequences better than 10.0: 1
Number of HSP's gapped: 397
Number of HSP's successfully gapped: 76
Length of query: 151
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 66
Effective length of database: 4,328,508
Effective search space: 285681528
Effective search space used: 285681528
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (24.2 bits)