RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1231
(151 letters)
>d1h4vb2 d.104.1.1 (B:2-325) Histidyl-tRNA synthetase (HisRS)
{Thermus thermophilus [TaxId: 274]}
Length = 324
Score = 70.8 bits (172), Expect = 6e-16
Identities = 13/53 (24%), Positives = 25/53 (47%)
Query: 65 LKTPKGTRDYGPDSTVVRNQVLDKIVKIFKKHGAVTIDTPIFELKEVLTGKYG 117
+ +GT+D + +++ K+ + GA+ + TPIFE +V G
Sbjct: 2 ARAVRGTKDLFGKELRMHQRIVATARKVLEAAGALELVTPIFEETQVFEKGVG 54
>d1qe0a2 d.104.1.1 (A:1-325) Histidyl-tRNA synthetase (HisRS)
{Staphylococcus aureus [TaxId: 1280]}
Length = 325
Score = 70.8 bits (172), Expect = 7e-16
Identities = 13/54 (24%), Positives = 28/54 (51%)
Query: 64 ILKTPKGTRDYGPDSTVVRNQVLDKIVKIFKKHGAVTIDTPIFELKEVLTGKYG 117
++K P+GT+D P+ + + +++ ++ + I TPIFE ++ G
Sbjct: 1 MIKIPRGTQDILPEDSKKWRYIENQLDELMTFYNYKEIRTPIFESTDLFARGVG 54
>d1kmma2 d.104.1.1 (A:4-325) Histidyl-tRNA synthetase (HisRS)
{Escherichia coli [TaxId: 562]}
Length = 322
Score = 69.3 bits (168), Expect = 2e-15
Identities = 11/53 (20%), Positives = 21/53 (39%)
Query: 65 LKTPKGTRDYGPDSTVVRNQVLDKIVKIFKKHGAVTIDTPIFELKEVLTGKYG 117
++ +G DY P T + ++ + + +G I PI E + G
Sbjct: 2 IQAIRGMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIG 54
>d1r6ta1 a.16.1.3 (A:7-60) N-terminal domain of eukaryotic
tryptophanyl-tRNA synthetase (TrpRS) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 54
Score = 63.2 bits (154), Expect = 4e-15
Identities = 19/45 (42%), Positives = 28/45 (62%)
Query: 5 APMADIQESIKAQGDVVRKLKSSKAPKEQIDEEVKKLLELKNQLK 49
A + ++ SI QG++VR LK+ A K++ID VK L+ LK K
Sbjct: 1 ASLLELFNSIATQGELVRSLKAGNASKDEIDSAVKMLVSLKMSYK 45
>d1fyja_ a.16.1.3 (A:) Multifunctional Glu-Pro-tRNA synthase
(EPRS) second repeated element {Human (Homo sapiens)
[TaxId: 9606]}
Length = 57
Score = 62.8 bits (153), Expect = 7e-15
Identities = 21/43 (48%), Positives = 28/43 (65%)
Query: 7 MADIQESIKAQGDVVRKLKSSKAPKEQIDEEVKKLLELKNQLK 49
+ + QGDVVR+LK+ KAPKE +D VK+LL LK + K
Sbjct: 2 SLVLYNRVAVQGDVVRELKAKKAPKEDVDAAVKQLLSLKAEYK 44
>d1d2da_ a.16.1.3 (A:) Multifunctional Glu-Pro-tRNA synthase
(EPRS) second repeated element {Chinese hamster
(Cricetulus griseus) [TaxId: 10029]}
Length = 56
Score = 62.4 bits (152), Expect = 1e-14
Identities = 21/40 (52%), Positives = 29/40 (72%)
Query: 10 IQESIKAQGDVVRKLKSSKAPKEQIDEEVKKLLELKNQLK 49
+ + I AQG+VVRKLK+ KAPK ++ E V+ LL LK + K
Sbjct: 2 VYDKIAAQGEVVRKLKAEKAPKAKVTEAVECLLSLKAEYK 41
>d1wu7a2 d.104.1.1 (A:3-329) Histidyl-tRNA synthetase (HisRS)
{Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Length = 327
Score = 67.4 bits (163), Expect = 1e-14
Identities = 12/56 (21%), Positives = 23/56 (41%)
Query: 62 KFILKTPKGTRDYGPDSTVVRNQVLDKIVKIFKKHGAVTIDTPIFELKEVLTGKYG 117
+ ++ +G RD+ P+ V + + + G ID P E ++ K G
Sbjct: 1 RLQIEKIRGFRDFYPEDMDVEKFIFKTAEEAAEAFGFRRIDFPSLEYLDLYRIKSG 56
>d1z7ma1 d.104.1.1 (A:6-323) ATP phosphoribosyltransferase
regulatory subunit HisZ {Lactococcus lactis [TaxId:
1358]}
Length = 318
Score = 60.1 bits (144), Expect = 4e-12
Identities = 8/50 (16%), Positives = 19/50 (38%)
Query: 68 PKGTRDYGPDSTVVRNQVLDKIVKIFKKHGAVTIDTPIFELKEVLTGKYG 117
P+ + + + Q+ ++ K+F + P FE ++ T
Sbjct: 4 PEESAEMTLNQVKSLRQIEGRLRKLFSLKNYQEVMPPSFEYTQLYTALES 53
>d1usya_ d.104.1.1 (A:) ATP phosphoribosyltransferase regulatory
subunit HisZ {Thermotoga maritima [TaxId: 2336]}
Length = 275
Score = 36.7 bits (84), Expect = 6e-04
Identities = 7/34 (20%), Positives = 11/34 (32%), Gaps = 3/34 (8%)
Query: 86 LDKIVKIFK---KHGAVTIDTPIFELKEVLTGKY 116
+K+ + K G P E E G +
Sbjct: 6 FEKVFSFYSKATKKGFSPFFVPALEKAEEPAGNF 39
>d1b76a2 d.104.1.1 (A:1-394) Glycyl-tRNA synthetase (GlyRS) {Thermus
thermophilus [TaxId: 274]}
Length = 331
Score = 30.5 bits (68), Expect = 0.069
Identities = 9/46 (19%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Query: 69 KGTRDYGPDSTVVRNQVLDKIVK--IFKKHGAVTIDTPIFELKEVL 112
+G DYGP ++N + + ++++ +D + + VL
Sbjct: 29 QGVYDYGPLGVELKNNLKQAWWRRNVYERDDMEGLDASVLTHRLVL 74
>d2bbya_ a.4.5.15 (A:) DNA-binding domain from rap30 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 69
Score = 28.5 bits (64), Expect = 0.070
Identities = 11/38 (28%), Positives = 17/38 (44%), Gaps = 7/38 (18%)
Query: 82 RNQVLDKIVKIFKKHGAVTIDT-------PIFELKEVL 112
+ VLD + F+KH + P+ LKE+L
Sbjct: 6 KQHVLDMLFSAFEKHQYYNLKDLVDITKQPVVYLKEIL 43
>d1nj8a3 d.104.1.1 (A:0-267) Prolyl-tRNA synthetase (ProRS)
{Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190]}
Length = 268
Score = 30.2 bits (67), Expect = 0.080
Identities = 14/83 (16%), Positives = 27/83 (32%), Gaps = 3/83 (3%)
Query: 69 KGTRDYGPDSTVVRNQVLDKIVKIFKKHGAVTIDTPIFELKEVLTGKYGVYWTGYSTAVG 128
KG Y P +R + I + + G P+ ++ L K + G+ V
Sbjct: 25 KGCGVYLPYGFKIRRYTFEIIRNLLDESGHDEALFPMLIPED-LLAKEAEHIKGFEDEVY 83
Query: 129 FLMIHSVPS--APLWINWTNHLG 149
++ L + T+
Sbjct: 84 WVTHGGKTQLDVKLALRPTSETP 106
>d1b8aa2 d.104.1.1 (A:104-438) Aspartyl-tRNA synthetase (AspRS)
{Archaeon Pyrococcus kodakaraensis [TaxId: 311400]}
Length = 335
Score = 28.3 bits (62), Expect = 0.33
Identities = 10/59 (16%), Positives = 19/59 (32%), Gaps = 6/59 (10%)
Query: 81 VRNQVLDKIVKIFKKHGAVTIDTPIFELKEVLTGKYGVYWTGYSTAVGFLMIHSVPSAP 139
+R+ V + F ++G + I TP + T F + +P
Sbjct: 36 IRSSVFKAVRDFFHENGFIEIHTPK------IIATATEGGTELFPMKYFEEDAFLAESP 88
>d1e1oa2 d.104.1.1 (A:161-502) Lysyl-tRNA synthetase (LysRS)
{Escherichia coli, gene lysU [TaxId: 562]}
Length = 342
Score = 27.5 bits (60), Expect = 0.78
Identities = 13/71 (18%), Positives = 31/71 (43%), Gaps = 11/71 (15%)
Query: 81 VRNQVLDKIVKIFKKHGAVTIDTPIFELKEVLTGKYGVYWTGYSTAVGFLMIHSVPSAPL 140
VR+++L I + G + ++TP+ ++ + G ++A F+ H+ +
Sbjct: 25 VRSKILAAIRQFMVARGFMEVETPM--MQVIPGG---------ASARPFITHHNALDLDM 73
Query: 141 WINWTNHLGKK 151
++ L K
Sbjct: 74 YLRIAPELYLK 84
>d1eova2 d.104.1.1 (A:205-557) Aspartyl-tRNA synthetase (AspRS)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 353
Score = 26.4 bits (57), Expect = 1.7
Identities = 3/25 (12%), Positives = 8/25 (32%)
Query: 81 VRNQVLDKIVKIFKKHGAVTIDTPI 105
++ V + + + TP
Sbjct: 46 IQAGVCELFREYLATKKFTEVHTPK 70
>d1l0wa3 d.104.1.1 (A:105-294,A:415-580) Aspartyl-tRNA synthetase
(AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]}
Length = 356
Score = 25.9 bits (56), Expect = 2.3
Identities = 7/25 (28%), Positives = 14/25 (56%)
Query: 81 VRNQVLDKIVKIFKKHGAVTIDTPI 105
+R++V+ I + G V ++TP
Sbjct: 42 LRHRVIKAIWDFLDREGFVQVETPF 66
>d1n9wa2 d.104.1.1 (A:111-414) Aspartyl-tRNA synthetase (AspRS)
{Thermus thermophilus, AspRS-2 [TaxId: 274]}
Length = 304
Score = 25.5 bits (55), Expect = 2.6
Identities = 4/25 (16%), Positives = 9/25 (36%)
Query: 81 VRNQVLDKIVKIFKKHGAVTIDTPI 105
V+ ++ + + I TP
Sbjct: 17 VQAALVRGFRRYLDRQDFTEIFTPK 41
>d1c0aa3 d.104.1.1 (A:107-287,A:421-585) Aspartyl-tRNA synthetase
(AspRS) {Escherichia coli [TaxId: 562]}
Length = 346
Score = 25.5 bits (55), Expect = 2.7
Identities = 6/25 (24%), Positives = 13/25 (52%)
Query: 81 VRNQVLDKIVKIFKKHGAVTIDTPI 105
R ++ + + HG + I+TP+
Sbjct: 34 TRAKITSLVRRFMDDHGFLDIETPM 58
>d1ivsa1 a.2.7.3 (A:797-862) Valyl-tRNA synthetase (ValRS)
C-terminal domain {Thermus thermophilus [TaxId: 274]}
Length = 66
Score = 24.3 bits (53), Expect = 2.9
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 27 SKAPKEQIDEEVKKLLELKNQLKINDEA 54
KAPKE ++ E +L E Q + EA
Sbjct: 34 EKAPKEVVEAEEARLKENLEQAERIREA 61
>d2nrqa1 d.77.1.2 (A:4-144) Hypothetical protein SSO0741 {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 141
Score = 24.7 bits (54), Expect = 4.0
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 18 GDVVRKLKSSKAPKEQIDEEVKKLLE 43
DV++ + S E I EE+KKL+
Sbjct: 113 DDVIKCIISFNTSLENIKEEIKKLVN 138
>d1nnha_ d.104.1.1 (A:) Hypothetical protein PF1951 {Archaeon
Pyrococcus furiosus [TaxId: 2261]}
Length = 293
Score = 25.1 bits (54), Expect = 4.3
Identities = 5/25 (20%), Positives = 12/25 (48%)
Query: 81 VRNQVLDKIVKIFKKHGAVTIDTPI 105
++ ++L+ + F K G + I
Sbjct: 16 IQTKILEYMTDFFVKEGFKWLLPVI 40
>d1jjca_ d.104.1.1 (A:) Phenyl-tRNA synthetase (PheRS) alpha
subunit, PheS {Thermus thermophilus [TaxId: 274]}
Length = 266
Score = 25.0 bits (54), Expect = 4.4
Identities = 6/25 (24%), Positives = 13/25 (52%)
Query: 83 NQVLDKIVKIFKKHGAVTIDTPIFE 107
+ ++V+IF+ G ++ P E
Sbjct: 20 TLMERELVEIFRALGYQAVEGPEVE 44
>d1hjra_ c.55.3.6 (A:) RuvC resolvase {Escherichia coli [TaxId:
562]}
Length = 158
Score = 23.8 bits (51), Expect = 8.1
Identities = 9/27 (33%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 28 KAPKEQIDEEVKKLLELKNQLKINDEA 54
A K Q+ V+ LL+L + D A
Sbjct: 115 SAEKSQVQHMVRTLLKLPANPQ-ADAA 140
>d1whia_ b.39.1.1 (A:) Ribosomal protein L14 {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 122
Score = 23.6 bits (51), Expect = 9.3
Identities = 10/27 (37%), Positives = 19/27 (70%)
Query: 66 KTPKGTRDYGPDSTVVRNQVLDKIVKI 92
K+P+GTR +GP + +R++ KI+ +
Sbjct: 91 KSPRGTRIFGPVARELRDKDFMKIISL 117
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.313 0.131 0.379
Gapped
Lambda K H
0.267 0.0649 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 549,585
Number of extensions: 24694
Number of successful extensions: 116
Number of sequences better than 10.0: 1
Number of HSP's gapped: 116
Number of HSP's successfully gapped: 37
Length of query: 151
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 73
Effective length of database: 1,336,656
Effective search space: 97575888
Effective search space used: 97575888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 49 (22.8 bits)