BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12310
(201 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1V5L|A Chain A, Solution Structure Of Pdz Domain Of Mouse Alpha-Actinin-2
Associated Lim Protein
Length = 103
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 53 WGLRIAGGCDLDSPIVITKVYPGT-PAAAELKRGDIIRKIGDYDSRDLRHKDATNFFQSS 111
WG R++GG D + P+VIT++ PG+ AAA L GD+I I + + + H DA + +++
Sbjct: 17 WGFRLSGGIDFNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESMTHADAQDRIKAA 76
Query: 112 DTSISLGIQR 121
+ L I R
Sbjct: 77 SYQLCLKIDR 86
>pdb|1RGW|A Chain A, Solution Structure Of Zasp's Pdz Domain
Length = 85
Score = 53.9 bits (128), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 46/71 (64%), Gaps = 1/71 (1%)
Query: 53 WGLRIAGGCDLDSPIVITKVYPGTPAA-AELKRGDIIRKIGDYDSRDLRHKDATNFFQSS 111
WG R+ GG D + P+ I+++ PG+ AA ++L +GD++ I ++ + H +A N +S+
Sbjct: 13 WGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTMTHLEAQNKIKSA 72
Query: 112 DTSISLGIQRN 122
++SL +Q++
Sbjct: 73 SYNLSLTLQKS 83
>pdb|1WJL|A Chain A, Solution Structure Of Pdz Domain Of Mouse Cypher Protein
Length = 90
Score = 53.9 bits (128), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 46/71 (64%), Gaps = 1/71 (1%)
Query: 53 WGLRIAGGCDLDSPIVITKVYPGTPAA-AELKRGDIIRKIGDYDSRDLRHKDATNFFQSS 111
WG R+ GG D + P+ I+++ PG+ AA ++L +GD++ I ++ + H +A N +S+
Sbjct: 20 WGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTMTHLEAQNKIKSA 79
Query: 112 DTSISLGIQRN 122
++SL +Q++
Sbjct: 80 SYNLSLTLQKS 90
>pdb|2PKT|A Chain A, Crystal Structure Of The Human Clp-36 (Pdlim1) Bound To
The C-Terminal Peptide Of Human Alpha-Actinin-1
Length = 91
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 53 WGLRIAGGCDLDSPIVITKVYPGTPAA-AELKRGDIIRKIGDYDSRDLRHKDATNFFQSS 111
WG R+ GG D + P+ I++V PG+ AA A L GD+I I ++ ++ H +A N +
Sbjct: 15 WGFRLVGGKDFEQPLAISRVTPGSKAALANLCIGDVITAIDGENTSNMTHLEAQNRIKGC 74
Query: 112 DTSISLGIQRN 122
+++L + R+
Sbjct: 75 TDNLTLTVARS 85
>pdb|2EEG|A Chain A, Solution Structure Of Pdz Domain Of Pdz And Lim Domain
Protein
Length = 94
Score = 50.4 bits (119), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 8/96 (8%)
Query: 29 SGKPAQPHQNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAA-AELKRGDI 87
SG PH +V ++ P+ WG R+ GG D +P+ I++V+ G+ AA A L GD+
Sbjct: 3 SGSSGMPH----SVTLRGPS---PWGFRLVGGRDFSAPLTISRVHAGSKAALAALCPGDL 55
Query: 88 IRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNP 123
I+ I + + H +A N + ++L + P
Sbjct: 56 IQAINGESTELMTHLEAQNRIKGCHDHLTLSVSSGP 91
>pdb|1VB7|A Chain A, Solution Structure Of The Pdz Domain Of Pdz And Lim Domain
2
Length = 94
Score = 50.1 bits (118), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 53 WGLRIAGGCDLDSPIVITKVYP-GTPAAAELKRGDIIRKIGDYDSRDLRHKDATNFFQSS 111
WG RI+GG D +PI++TKV G AA+L+ GDII I + ++ H +A + + S
Sbjct: 18 WGFRISGGRDFHTPIIVTKVTERGKAEAADLRPGDIIVAINGQSAENMLHAEAQSKIRQS 77
Query: 112 DTSISLGIQRN 122
+ + L + R+
Sbjct: 78 ASPLRLQLDRS 88
>pdb|2Q3G|A Chain A, Structure Of The Pdz Domain Of Human Pdlim7 Bound To A C-
Terminal Extension From Human Beta-Tropomyosin
pdb|2Q3G|B Chain B, Structure Of The Pdz Domain Of Human Pdlim7 Bound To A C-
Terminal Extension From Human Beta-Tropomyosin
Length = 89
Score = 50.1 bits (118), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 4/86 (4%)
Query: 37 QNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAA-AELKRGDIIRKIGDYD 95
++F VV++ P WG R+ GG D + P+ I+++ PG AA A + GD + I +
Sbjct: 2 MDSFKVVLEGP---APWGFRLQGGKDFNVPLSISRLTPGGKAAQAGVAVGDWVLSIDGEN 58
Query: 96 SRDLRHKDATNFFQSSDTSISLGIQR 121
+ L H +A N ++ +SLG+ R
Sbjct: 59 AGSLTHIEAQNKIRACGERLSLGLSR 84
>pdb|2V1W|A Chain A, Crystal Structure Of Human Lim Protein Ril (Pdlim4) Pdz
Domain Bound To The C-Terminal Peptide Of Human Alpha-
Actinin-1
pdb|2V1W|B Chain B, Crystal Structure Of Human Lim Protein Ril (Pdlim4) Pdz
Domain Bound To The C-Terminal Peptide Of Human Alpha-
Actinin-1
Length = 90
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Query: 53 WGLRIAGGCDLDSPIVITKVYPGTPAA-AELKRGDIIRKIGDYDSRDLRHKDATNFFQSS 111
WG R+ GG D +P+ I++V+ G+ AA A L GD+I+ I + + H +A N +
Sbjct: 14 WGFRLVGGRDFSAPLTISRVHAGSKAALAALCPGDLIQAINGESTELMTHLEAQNRIKGC 73
Query: 112 DTSISLGIQRNPPGE 126
++L + R P GE
Sbjct: 74 HDHLTLSVSR-PEGE 87
>pdb|3PDV|A Chain A, Structure Of The Pdlim2 Pdz Domain In Complex With The
C-Terminal 6- Peptide Extension Of Ns1
Length = 89
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 53 WGLRIAGGCDLDSPIVITKVYP-GTPAAAELKRGDIIRKIGDYDSRDLRHKDATNFFQSS 111
WG RI GG D +PI++TKV G A+L+ GDII I + + H +A + + S
Sbjct: 13 WGFRITGGRDFHTPIMVTKVAERGKAKDADLRPGDIIVAINGESAEGMLHAEAQSKIRQS 72
Query: 112 DTSISLGIQRN 122
+ + L + R+
Sbjct: 73 PSPLRLQLDRS 83
>pdb|2UZC|A Chain A, Structure Of Human Pdlim5 In Complex With The C-Terminal
Peptide Of Human Alpha-Actinin-1
pdb|2UZC|B Chain B, Structure Of Human Pdlim5 In Complex With The C-Terminal
Peptide Of Human Alpha-Actinin-1
pdb|2UZC|C Chain C, Structure Of Human Pdlim5 In Complex With The C-Terminal
Peptide Of Human Alpha-Actinin-1
pdb|2UZC|D Chain D, Structure Of Human Pdlim5 In Complex With The C-Terminal
Peptide Of Human Alpha-Actinin-1
pdb|2UZC|E Chain E, Structure Of Human Pdlim5 In Complex With The C-Terminal
Peptide Of Human Alpha-Actinin-1
Length = 88
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 53 WGLRIAGGCDLDSPIVITKVYPGTPAA-AELKRGDIIRKIGDYDSRDLRHKDATNFFQSS 111
WG R+ GG D + P+ I+ + G AA A ++ GD++ I +++ + H +A N +
Sbjct: 15 WGFRLQGGKDFNMPLTISSLKDGGKAAQANVRIGDVVLSIDGINAQGMTHLEAQNKIKGC 74
Query: 112 DTSISLGIQR 121
S+++ +QR
Sbjct: 75 TGSLNMTLQR 84
>pdb|2PA1|A Chain A, Structure Of The Pdz Domain Of Human Pdlim2 Bound To A
C-Terminal Extension From Human Beta-Tropomyosin
Length = 87
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 53 WGLRIAGGCDLDSPIVITKVYP-GTPAAAELKRGDIIRKIGDYDSRDLRHKDATNFFQSS 111
WG RI GG D +PI++TKV G A+L+ GDII I + + H +A + + S
Sbjct: 14 WGFRITGGRDFHTPIMVTKVAERGKAKDADLRPGDIIVAINGESAEGMLHAEAQSKIRQS 73
Query: 112 DTSISLGIQR 121
+ + L + R
Sbjct: 74 PSPLRLQLDR 83
>pdb|2DKR|A Chain A, Solution Structure Of The Pdz Domain From Human Lin-7
Homolog B
Length = 93
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Query: 43 VIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAA--AELKRGDIIRKIGDYDSRDLR 100
V++ P G I GG + +SPI I++V PG A LKRGD + + +
Sbjct: 8 VVELPKTDEGLGFNIMGGKEQNSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQ 67
Query: 101 HKDATNFFQSSDTSISLGIQRNP 123
H+ A +++ S+ L ++ P
Sbjct: 68 HEKAVELLKAAQGSVKLVVRSGP 90
>pdb|1WF7|A Chain A, Solution Structure Of The Pdz Domain Of Enigma Homologue
Protein
Length = 103
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 53 WGLRIAGGCDLDSPIVITKVYPGTPAA-AELKRGDIIRKIGDYDSRDLRHKDATNFFQSS 111
WG R+ GG D + P+ I+ + G A+ A ++ GD++ I ++ + H +A N ++
Sbjct: 17 WGFRLQGGKDFNMPLTISSLKDGGKASQAHVRIGDVVLSIDGISAQGMTHLEAQNKIKAC 76
Query: 112 DTSISLGIQR 121
S+++ +QR
Sbjct: 77 TGSLNMTLQR 86
>pdb|2DC2|A Chain A, Solution Structure Of Pdz Domain
Length = 103
Score = 43.9 bits (102), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Query: 50 HHSWGLRIAGGCDLDSPIVITKVYPGTPA--AAELKRGDIIRKIGDYDSRDLRHKDATNF 107
H G+ I GG + PI+I++++PG PA L GD I + + RD +HK+A
Sbjct: 20 HEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTI 79
Query: 108 FQSSDTSISL 117
I
Sbjct: 80 LSQQRGEIEF 89
>pdb|2CS5|A Chain A, Solution Structure Of Pdz Domain Of Protein Tyrosine
Phosphatase, Non-Receptor Type 4
Length = 119
Score = 43.9 bits (102), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
Query: 35 PHQNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA---AAELKRGDIIRKI 91
PH N + +K P+ + +G + GG D P+++++V PGTPA L GD + I
Sbjct: 12 PHDNLVLIRMK-PDENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLI 70
Query: 92 GDYDSRDLRHKDATNFFQSS 111
D + H F ++S
Sbjct: 71 NGRDIAEHTHDQVVLFIKAS 90
>pdb|3NFK|A Chain A, Crystal Structure Of The Ptpn4 Pdz Domain Complexed With
The C- Terminus Of A Rabies Virus G Protein
pdb|3NFK|B Chain B, Crystal Structure Of The Ptpn4 Pdz Domain Complexed With
The C- Terminus Of A Rabies Virus G Protein
pdb|3NFL|A Chain A, Crystal Structure Of The Ptpn4 Pdz Domain Complexed With
The C- Terminus Of The Glun2a Nmda Receptor Subunit
pdb|3NFL|B Chain B, Crystal Structure Of The Ptpn4 Pdz Domain Complexed With
The C- Terminus Of The Glun2a Nmda Receptor Subunit
pdb|3NFL|C Chain C, Crystal Structure Of The Ptpn4 Pdz Domain Complexed With
The C- Terminus Of The Glun2a Nmda Receptor Subunit
pdb|3NFL|D Chain D, Crystal Structure Of The Ptpn4 Pdz Domain Complexed With
The C- Terminus Of The Glun2a Nmda Receptor Subunit
Length = 107
Score = 43.9 bits (102), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 4/90 (4%)
Query: 25 PTRKSGKPAQPHQNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA---AAE 81
P + + PH N + +K P+ + +G + GG D P+++++V PGTPA
Sbjct: 4 PEKPTPNGGIPHDNLVLIRMK-PDENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPR 62
Query: 82 LKRGDIIRKIGDYDSRDLRHKDATNFFQSS 111
L GD + I D + H F ++S
Sbjct: 63 LNEGDQVVLINGRDIAEHTHDQVVLFIKAS 92
>pdb|4E34|A Chain A, Crystal Structure Of Cftr Associated Ligand (Cal) Pdz
Domain Bound To Ical36 (Ansrwptsii) Peptide
pdb|4E34|B Chain B, Crystal Structure Of Cftr Associated Ligand (Cal) Pdz
Domain Bound To Ical36 (Ansrwptsii) Peptide
pdb|4E35|A Chain A, Crystal Structure Of Cftr Associated Ligand (Cal) Pdz
Domain Bound To Ical36-L (Ansrwptsil) Peptide
pdb|4E35|B Chain B, Crystal Structure Of Cftr Associated Ligand (Cal) Pdz
Domain Bound To Ical36-L (Ansrwptsil) Peptide
Length = 87
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Query: 50 HHSWGLRIAGGCDLDSPIVITKVYPGTPA--AAELKRGDIIRKIGDYDSRDLRHKDATNF 107
H G+ I GG + PI+I++++PG PA L GD I + + RD +HK+A
Sbjct: 13 HEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTI 72
Query: 108 FQSSDTSISL 117
I
Sbjct: 73 LSQQRGEIEF 82
>pdb|2LOB|A Chain A, Pdz Domain Of Cal (Cystic Fibrosis Transmembrane
Regulator-Associated Ligand)
Length = 112
Score = 43.5 bits (101), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Query: 50 HHSWGLRIAGGCDLDSPIVITKVYPGTPA--AAELKRGDIIRKIGDYDSRDLRHKDATNF 107
H G+ I GG + PI+I++++PG PA L GD I + + RD +HK+A
Sbjct: 38 HEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTI 97
Query: 108 FQSSDTSISL 117
I
Sbjct: 98 LSQQRGEIEF 107
>pdb|2VPH|A Chain A, Crystal Structure Of The Human Protein Tyrosine
Phosphatase, Non-Receptor Type 4, Pdz Domain
pdb|2VPH|B Chain B, Crystal Structure Of The Human Protein Tyrosine
Phosphatase, Non-Receptor Type 4, Pdz Domain
Length = 100
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Query: 37 QNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA---AAELKRGDIIRKIGD 93
+ ++ +P+ + +G + GG D P+++++V PGTPA L GD + I
Sbjct: 2 MDNLVLIRMKPDENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLING 61
Query: 94 YDSRDLRHKDATNFFQSS 111
D + H F ++S
Sbjct: 62 RDIAEHTHDQVVLFIKAS 79
>pdb|3ZRT|A Chain A, Crystal Structure Of Human Psd-95 Pdz1-2
pdb|3ZRT|B Chain B, Crystal Structure Of Human Psd-95 Pdz1-2
pdb|3ZRT|C Chain C, Crystal Structure Of Human Psd-95 Pdz1-2
pdb|3ZRT|D Chain D, Crystal Structure Of Human Psd-95 Pdz1-2
Length = 199
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 45/94 (47%), Gaps = 10/94 (10%)
Query: 42 VVIKRPNRHHSWGLRIAGGCDL-----DSPIVITKVYPGTPAA--AELKRGDIIRKIGDY 94
+ ++R N G IAGG D D I ITK+ PG AA L+ D I + +
Sbjct: 16 ITLERGNS--GLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEV 73
Query: 95 DSRDLRHKDATNFFQSSDTSISLGI-QRNPPGEK 127
D R++ H A + + + + L + +R PP EK
Sbjct: 74 DVREVTHSAAVEALKEAGSIVRLYVMRRKPPAEK 107
>pdb|3GSL|A Chain A, Crystal Structure Of Psd-95 Tandem Pdz Domains 1 And 2
pdb|3GSL|B Chain B, Crystal Structure Of Psd-95 Tandem Pdz Domains 1 And 2
Length = 196
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 45/94 (47%), Gaps = 10/94 (10%)
Query: 42 VVIKRPNRHHSWGLRIAGGCDL-----DSPIVITKVYPGTPAA--AELKRGDIIRKIGDY 94
+ ++R N G IAGG D D I ITK+ PG AA L+ D I + +
Sbjct: 9 ITLERGNS--GLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEV 66
Query: 95 DSRDLRHKDATNFFQSSDTSISLGI-QRNPPGEK 127
D R++ H A + + + + L + +R PP EK
Sbjct: 67 DVREVTHSAAVEALKEAGSIVRLYVMRRKPPAEK 100
>pdb|2KA9|A Chain A, Solution Structure Of Psd-95 Pdz12 Complexed With Cypin
Peptide
Length = 189
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 45/94 (47%), Gaps = 10/94 (10%)
Query: 42 VVIKRPNRHHSWGLRIAGGCDL-----DSPIVITKVYPGTPAA--AELKRGDIIRKIGDY 94
+ ++R N G IAGG D D I ITK+ PG AA L+ D I + +
Sbjct: 6 ITLERGNS--GLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEV 63
Query: 95 DSRDLRHKDATNFFQSSDTSISLGI-QRNPPGEK 127
D R++ H A + + + + L + +R PP EK
Sbjct: 64 DVREVTHSAAVEALKEAGSIVRLYVMRRKPPAEK 97
>pdb|2XKX|A Chain A, Single Particle Analysis Of Psd-95 In Negative Stain
pdb|2XKX|B Chain B, Single Particle Analysis Of Psd-95 In Negative Stain
Length = 721
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 45/94 (47%), Gaps = 10/94 (10%)
Query: 42 VVIKRPNRHHSWGLRIAGGCDL-----DSPIVITKVYPGTPAA--AELKRGDIIRKIGDY 94
+ ++R N G IAGG D D I ITK+ PG AA L+ D I + +
Sbjct: 63 ITLERGN--SGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEV 120
Query: 95 DSRDLRHKDATNFFQSSDTSISLGI-QRNPPGEK 127
D R++ H A + + + + L + +R PP EK
Sbjct: 121 DVREVTHSAAVEALKEAGSIVRLYVMRRKPPAEK 154
Score = 34.3 bits (77), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Query: 54 GLRIAGGCDLDSPIVITKVYPGTPA--AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSS 111
G I GG D + I I+ + G PA + EL++GD I + D R+ H+ A +++
Sbjct: 321 GFNIVGGEDGEG-IFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNA 379
Query: 112 DTSISLGIQRNP 123
++++ Q P
Sbjct: 380 GQTVTIIAQYKP 391
>pdb|2JIN|A Chain A, Crystal Structure Of Pdz Domain Of Synaptojanin-2 Binding
Protein
Length = 102
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 7/76 (9%)
Query: 52 SWGLRIAGGCDL-----DSPIVITKVYPGTPAA--AELKRGDIIRKIGDYDSRDLRHKDA 104
G I GG D DS I ++++ AA L+ GD I + D ++L H+DA
Sbjct: 21 GLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDA 80
Query: 105 TNFFQSSDTSISLGIQ 120
+ F+++ ++SL +Q
Sbjct: 81 VDLFRNAGYAVSLRVQ 96
>pdb|2JIK|A Chain A, Crystal Structure Of Pdz Domain Of Synaptojanin-2 Binding
Protein
pdb|2JIK|B Chain B, Crystal Structure Of Pdz Domain Of Synaptojanin-2 Binding
Protein
Length = 101
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 7/76 (9%)
Query: 52 SWGLRIAGGCDL-----DSPIVITKVYPGTPAA--AELKRGDIIRKIGDYDSRDLRHKDA 104
G I GG D DS I ++++ AA L+ GD I + D ++L H+DA
Sbjct: 19 GLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDA 78
Query: 105 TNFFQSSDTSISLGIQ 120
+ F+++ ++SL +Q
Sbjct: 79 VDLFRNAGYAVSLRVQ 94
>pdb|2ENO|A Chain A, Solution Structure Of The Pdz Domain From Human
Synaptojanin 2 Binding Protein
Length = 120
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 7/76 (9%)
Query: 52 SWGLRIAGGCDL-----DSPIVITKVYPGTPAA--AELKRGDIIRKIGDYDSRDLRHKDA 104
G I GG D DS I ++++ AA L+ GD I + D ++L H+DA
Sbjct: 29 GLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDA 88
Query: 105 TNFFQSSDTSISLGIQ 120
+ F+++ ++SL +Q
Sbjct: 89 VDLFRNAGYAVSLRVQ 104
>pdb|1RGR|A Chain A, Cyclic Peptides Targeting Pdz Domains Of Psd-95:
Structural Basis For Enhanced Affinity And Enzymatic
Stability
Length = 99
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 9/90 (10%)
Query: 42 VVIKRPNRHHSWGLRIAGGCDL-----DSPIVITKVYPGTPAA--AELKRGDIIRKIGDY 94
+ ++R N G IAGG D D I ITK+ PG AA L+ D I + +
Sbjct: 5 ITLERGN--SGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEV 62
Query: 95 DSRDLRHKDATNFFQSSDTSISLGIQRNPP 124
D R++ H A + + + + L + R P
Sbjct: 63 DVREVTHSAAVEALKEAGSIVRLYVMRRKP 92
>pdb|1KEF|A Chain A, Pdz1 Of Sap90
Length = 93
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 9/90 (10%)
Query: 42 VVIKRPNRHHSWGLRIAGGCDL-----DSPIVITKVYPGTPAA--AELKRGDIIRKIGDY 94
+ ++R N G IAGG D D I ITK+ PG AA L+ D I + +
Sbjct: 5 ITLERGN--SGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEV 62
Query: 95 DSRDLRHKDATNFFQSSDTSISLGIQRNPP 124
D R++ H A + + + + L + R P
Sbjct: 63 DVREVTHSAAVEALKEAGSIVRLYVMRRKP 92
>pdb|2VRF|A Chain A, Crystal Structure Of The Human Beta-2-Syntrophin Pdz
Domain
pdb|2VRF|B Chain B, Crystal Structure Of The Human Beta-2-Syntrophin Pdz
Domain
pdb|2VRF|C Chain C, Crystal Structure Of The Human Beta-2-Syntrophin Pdz
Domain
pdb|2VRF|D Chain D, Crystal Structure Of The Human Beta-2-Syntrophin Pdz
Domain
Length = 95
Score = 35.8 bits (81), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Query: 52 SWGLRIAGGCDLDSPIVITKVYPGTPA--AAELKRGDIIRKIGDYDSRDLRHKDATNFFQ 109
G+ I GG + PI+I+K++PG A + L+ GD I + D R H A +
Sbjct: 16 GLGISIKGGRENRMPILISKIFPGLAADQSRALRLGDAILSVNGTDLRQATHDQAVQALK 75
Query: 110 SSDTSISLGIQ 120
+ + L ++
Sbjct: 76 RAGKEVLLEVK 86
>pdb|1IU0|A Chain A, The First Pdz Domain Of Psd-95
pdb|1IU2|A Chain A, The First Pdz Domain Of Psd-95
Length = 91
Score = 35.4 bits (80), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 9/87 (10%)
Query: 42 VVIKRPNRHHSWGLRIAGGCDL-----DSPIVITKVYPGTPAA--AELKRGDIIRKIGDY 94
+ ++R N G IAGG D D I ITK+ PG AA L+ D I + +
Sbjct: 6 ITLERGN--SGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEV 63
Query: 95 DSRDLRHKDATNFFQSSDTSISLGIQR 121
D R++ H A + + + + L + R
Sbjct: 64 DVREVTHSAAVEALKEAGSIVRLYVMR 90
>pdb|1UEZ|A Chain A, Solution Structure Of The First Pdz Domain Of Human
Kiaa1526 Protein
Length = 101
Score = 34.3 bits (77), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Query: 42 VVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAAAE-LKRGDIIRKIGDYDSRDLR 100
V ++R H G I GG + I ++ V PG+ A E L+ GD I ++ D +
Sbjct: 12 VSLRRAKAHEGLGFSIRGGSEHGVGIYVSLVEPGSLAEKEGLRVGDQILRVNDKSLARVT 71
Query: 101 HKDATNFFQSS 111
H +A + S
Sbjct: 72 HAEAVKALKGS 82
>pdb|1TP3|A Chain A, Pdz3 Domain Of Psd-95 Protein Complexed With Kketpv
Peptide Ligand
pdb|1TP5|A Chain A, Crystal Structure Of Pdz3 Domain Of Psd-95 Protein
Complexed With A Peptide Ligand Kketwv
pdb|1TQ3|A Chain A, Higher Resolution Crystal Structure Of The Third Pdz
Domain Of Post Synaptic Psd-95 Protein
Length = 119
Score = 33.9 bits (76), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 50/105 (47%), Gaps = 9/105 (8%)
Query: 32 PAQPHQNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA--AAELKRGDIIR 89
P +P + +VI R + G I GG D + I I+ + G PA + EL++GD I
Sbjct: 12 PREPRR----IVIHRGS--TGLGFNIVGGEDGEG-IFISFILAGGPADLSGELRKGDQIL 64
Query: 90 KIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPPGEKKAASGSR 134
+ D R+ H+ A +++ ++++ Q P + + SR
Sbjct: 65 SVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPEEYSRFEANSR 109
>pdb|3JXT|A Chain A, Crystal Structure Of The Third Pdz Domain Of Sap-102 In
Complex With A Fluorogenic Peptide-Based Ligand
pdb|3JXT|B Chain B, Crystal Structure Of The Third Pdz Domain Of Sap-102 In
Complex With A Fluorogenic Peptide-Based Ligand
Length = 104
Score = 33.9 bits (76), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Query: 52 SWGLRIAGGCDLDSPIVITKVYPGTPA--AAELKRGDIIRKIGDYDSRDLRHKDATNFFQ 109
G I GG D + I ++ + G PA + EL+RGD I + + R+ H+ A +
Sbjct: 24 GLGFNIVGGEDGEG-IFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQAAAALK 82
Query: 110 SSDTSISLGIQRNP 123
+ S+++ Q P
Sbjct: 83 RAGQSVTIVAQYRP 96
>pdb|1UM7|A Chain A, Solution Structure Of The Third Pdz Domain Of Synapse-
Associated Protein 102
Length = 113
Score = 33.9 bits (76), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Query: 52 SWGLRIAGGCDLDSPIVITKVYPGTPA--AAELKRGDIIRKIGDYDSRDLRHKDATNFFQ 109
G I GG D + I ++ + G PA + EL+RGD I + + R+ H+ A +
Sbjct: 27 GLGFNIVGGEDGEG-IFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQAAAALK 85
Query: 110 SSDTSISLGIQRNP 123
+ S+++ Q P
Sbjct: 86 RAGQSVTIVAQYRP 99
>pdb|1BE9|A Chain A, The Third Pdz Domain From The Synaptic Protein Psd-95 In
Complex With A C-Terminal Peptide Derived From Cript.
pdb|1BFE|A Chain A, The Third Pdz Domain From The Synaptic Protein Psd-95
Length = 119
Score = 33.9 bits (76), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 50/105 (47%), Gaps = 9/105 (8%)
Query: 32 PAQPHQNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA--AAELKRGDIIR 89
P +P + +VI R + G I GG D + I I+ + G PA + EL++GD I
Sbjct: 12 PREPRR----IVIHRGS--TGLGFNIIGGEDGEG-IFISFILAGGPADLSGELRKGDQIL 64
Query: 90 KIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPPGEKKAASGSR 134
+ D R+ H+ A +++ ++++ Q P + + SR
Sbjct: 65 SVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPEEYSRFEANSR 109
>pdb|1UF1|A Chain A, Solution Structure Of The Second Pdz Domain Of Human
Kiaa1526 Protein
Length = 128
Score = 33.9 bits (76), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 52 SWGLRIAGGCDLDSPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQS 110
S GL I GG + I IT V PG+ A + LK GD I ++ ++ H +A +S
Sbjct: 33 SLGLTIRGGAEYGLGIYITGVDPGSEAEGSGLKVGDQILEVNGRSFLNILHDEAVRLLKS 92
Query: 111 S 111
S
Sbjct: 93 S 93
>pdb|1WI2|A Chain A, Solution Structure Of The Pdz Domain From Riken Cdna
2700099c19
Length = 104
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Query: 42 VVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLR 100
V +K+P G I GG I I+KV P + A A L+ GD + + D D +D+
Sbjct: 19 VTLKKPPGAQ-LGFNIRGGKASQLGIFISKVIPDSDAHRAGLQEGDQVLAVNDVDFQDIE 77
Query: 101 HKDATNFFQSS 111
H A +++
Sbjct: 78 HSKAVEILKTA 88
>pdb|2I1N|A Chain A, Crystal Structure Of The 1st Pdz Domain Of Human Dlg3
pdb|2I1N|B Chain B, Crystal Structure Of The 1st Pdz Domain Of Human Dlg3
Length = 102
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 9/77 (11%)
Query: 42 VVIKRPNRHHSWGLRIAGGCDL-----DSPIVITKVYPGTPAAAELKRG--DIIRKIGDY 94
+V++R N G IAGG D D I ITK+ PG AA + + G D + ++ +
Sbjct: 8 IVLERGNS--GLGFSIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDCVLRVNEV 65
Query: 95 DSRDLRHKDATNFFQSS 111
D ++ H A + +
Sbjct: 66 DVSEVVHSRAVEALKEA 82
>pdb|3I4W|A Chain A, Crystal Structure Of The Third Pdz Domain Of Psd-95
pdb|3I4W|B Chain B, Crystal Structure Of The Third Pdz Domain Of Psd-95
pdb|3I4W|C Chain C, Crystal Structure Of The Third Pdz Domain Of Psd-95
pdb|3I4W|D Chain D, Crystal Structure Of The Third Pdz Domain Of Psd-95
Length = 104
Score = 32.7 bits (73), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 9/94 (9%)
Query: 32 PAQPHQNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA--AAELKRGDIIR 89
P +P + +VI R + G I GG + I I+ + G PA + EL++GD I
Sbjct: 9 PREPRR----IVIHRGST--GLGFNIVGG-EXGEGIFISFILAGGPADLSGELRKGDQIL 61
Query: 90 KIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNP 123
+ D R+ H+ A +++ ++++ Q P
Sbjct: 62 SVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKP 95
>pdb|2DLU|A Chain A, Solution Structure Of The Second Pdz Domain Of Human Inad-
Like Protein
Length = 111
Score = 32.7 bits (73), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 40/91 (43%), Gaps = 4/91 (4%)
Query: 44 IKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAA--AELKRGDIIRKIGDYDSRDLRH 101
++ N G I GG S +V+ + PG A L+ GD I KIG + + +
Sbjct: 19 VELINDGSGLGFGIVGG--KTSGVVVRTIVPGGLADRDGRLQTGDHILKIGGTNVQGMTS 76
Query: 102 KDATNFFQSSDTSISLGIQRNPPGEKKAASG 132
+ ++ S+ + + R+P G+ SG
Sbjct: 77 EQVAQVLRNCGNSVRMLVARDPAGDISVTSG 107
>pdb|3K82|A Chain A, Crystal Structure Of The Third Pdz Domain Of Psd-95
Length = 98
Score = 32.7 bits (73), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 9/94 (9%)
Query: 32 PAQPHQNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA--AAELKRGDIIR 89
P +P + +VI R + G I GG + I I+ + G PA + EL++GD I
Sbjct: 4 PREPRR----IVIHRGST--GLGFNIVGG-EXGEGIFISFILAGGPADLSGELRKGDQIL 56
Query: 90 KIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNP 123
+ D R+ H+ A +++ ++++ Q P
Sbjct: 57 SVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKP 90
>pdb|1UEQ|A Chain A, Solution Structure Of The First Pdz Domain Of Human
Atrophin-1 Interacting Protein 1 (Kiaa0705 Protein)
Length = 123
Score = 32.3 bits (72), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 7/93 (7%)
Query: 37 QNTF-TVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAA--AELKRGDIIRKIGD 93
+ TF + +K+ N +G I GG + D + + V P PAA +++ GD+I I +
Sbjct: 17 KGTFLSTTLKKSNM--GFGFTIIGGDEPDEFLQVKSVIPDGPAAQDGKMETGDVIVYINE 74
Query: 94 YDSRDLRHKDATNFFQSS--DTSISLGIQRNPP 124
H D FQS S++L + R P
Sbjct: 75 VCVLGHTHADVVKLFQSVPIGQSVNLVLCRGYP 107
>pdb|2H3L|A Chain A, Crystal Structure Of Erbin Pdz
pdb|2H3L|B Chain B, Crystal Structure Of Erbin Pdz
pdb|1N7T|A Chain A, Erbin Pdz Domain Bound To A Phage-Derived Peptide
Length = 103
Score = 32.3 bits (72), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 8/84 (9%)
Query: 46 RPNRHHSWGLRIAGGCDL--------DSPIVITKVYPGTPAAAELKRGDIIRKIGDYDSR 97
R + G I+GG D I +T+V P PA+ L+ GD I + Y
Sbjct: 16 RVEKDPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASKLLQPGDKIIQANGYSFI 75
Query: 98 DLRHKDATNFFQSSDTSISLGIQR 121
++ H A + ++ ++ L I R
Sbjct: 76 NIEHGQAVSLLKTFQNTVELIIVR 99
>pdb|1MFG|A Chain A, The Structure Of Erbin Pdz Domain Bound To The Carboxy-
Terminal Tail Of The Erbb2 Receptor
pdb|1MFL|A Chain A, The Structure Of Erbin Pdz Domain Bound To The Carboxy-
Terminal Tail Of The Erbb2 Receptor
Length = 95
Score = 32.3 bits (72), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 8/84 (9%)
Query: 46 RPNRHHSWGLRIAGGCDL--------DSPIVITKVYPGTPAAAELKRGDIIRKIGDYDSR 97
R + G I+GG D I +T+V P PA+ L+ GD I + Y
Sbjct: 8 RVEKDPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASKLLQPGDKIIQANGYSFI 67
Query: 98 DLRHKDATNFFQSSDTSISLGIQR 121
++ H A + ++ ++ L I R
Sbjct: 68 NIEHGQAVSLLKTFQNTVELIIVR 91
>pdb|3CH8|A Chain A, The Crystal Structure Of Pdz-Fibronectin Fusion Protein
Length = 195
Score = 32.0 bits (71), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 8/76 (10%)
Query: 54 GLRIAGGCDL--------DSPIVITKVYPGTPAAAELKRGDIIRKIGDYDSRDLRHKDAT 105
G I+GG D I +T+V P PA+ L+ GD I + Y ++ H A
Sbjct: 6 GFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASKLLQPGDKIIQANGYSFINIEHGQAV 65
Query: 106 NFFQSSDTSISLGIQR 121
+ ++ ++ L I R
Sbjct: 66 SLLKTFQNTVELIIVR 81
>pdb|2QBW|A Chain A, The Crystal Structure Of Pdz-Fibronectin Fusion Protein
Length = 195
Score = 31.6 bits (70), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 8/76 (10%)
Query: 54 GLRIAGGCDL--------DSPIVITKVYPGTPAAAELKRGDIIRKIGDYDSRDLRHKDAT 105
G I+GG D I +T+V P PA+ L+ GD I + Y ++ H A
Sbjct: 5 GFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASKLLQPGDKIIQANGYSFINIEHGQAV 64
Query: 106 NFFQSSDTSISLGIQR 121
+ ++ ++ L I R
Sbjct: 65 SLLKTFQNTVELIIVR 80
>pdb|2CSJ|A Chain A, Solution Structure Of N-Terminal Pdz Domain From Mouse
Tjp2
Length = 117
Score = 31.2 bits (69), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 43/88 (48%), Gaps = 7/88 (7%)
Query: 40 FTVVIKRPNRHHSWGLRIAGGCD------LDSPIVITKVYPGTPAAAELKRGDIIRKIGD 93
+TV +++ ++ +G+ ++GG D ++ IVI+ V PG PA L+ D + +
Sbjct: 16 YTVTLQKDSKR-GFGIAVSGGRDNPHFENGETSIVISDVLPGGPADGLLQENDRVVMVNG 74
Query: 94 YDSRDLRHKDATNFFQSSDTSISLGIQR 121
D+ H A + S ++ ++R
Sbjct: 75 TPMEDVLHSFAVQQLRKSGKIAAIVVKR 102
>pdb|3ODM|A Chain A, Archaeal-Type Phosphoenolpyruvate Carboxylase
pdb|3ODM|B Chain B, Archaeal-Type Phosphoenolpyruvate Carboxylase
pdb|3ODM|C Chain C, Archaeal-Type Phosphoenolpyruvate Carboxylase
pdb|3ODM|D Chain D, Archaeal-Type Phosphoenolpyruvate Carboxylase
pdb|3ODM|E Chain E, Archaeal-Type Phosphoenolpyruvate Carboxylase
pdb|3ODM|F Chain F, Archaeal-Type Phosphoenolpyruvate Carboxylase
pdb|3ODM|G Chain G, Archaeal-Type Phosphoenolpyruvate Carboxylase
pdb|3ODM|H Chain H, Archaeal-Type Phosphoenolpyruvate Carboxylase
Length = 560
Score = 30.8 bits (68), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 55/120 (45%), Gaps = 10/120 (8%)
Query: 1 MDLVNVNTNSKSLDALTSTNQALIPTRKSGKPAQPHQNTFTVVIKRPNRHHSWGLRIAGG 60
M ++ N SK L + ++ ++P ++GK Q+ V+ N+++ L
Sbjct: 122 MSIIETNVQSKELTGTPAISEVVVPMIETGKEISEFQDRVNSVVDMGNKNYKTKL----- 176
Query: 61 CDLDSPIVITKVYPGTPAAAELKRGDIIRKIGDYD-SRDLRHKDATNFFQSSDTSISLGI 119
DL+S +I V PA A + R I+ + + + S+ KD SDT++S G+
Sbjct: 177 -DLNSVRIIPLV-EDVPALANIDR--ILDEHYEIEKSKGHILKDLRIMIARSDTAMSYGL 232
>pdb|2JWE|A Chain A, Solution Structure Of The Second Pdz Domain From Human
Zonula Occludens-1: A Dimeric Form With 3d Domain
Swapping
pdb|2JWE|B Chain B, Solution Structure Of The Second Pdz Domain From Human
Zonula Occludens-1: A Dimeric Form With 3d Domain
Swapping
Length = 88
Score = 30.4 bits (67), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 18/84 (21%), Positives = 40/84 (47%), Gaps = 8/84 (9%)
Query: 42 VVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAA--AELKRGDIIRKIGDYDSRDL 99
V + + ++ +GLR+A S I + ++ + AA ++ GD++ KI + ++
Sbjct: 3 VTLVKSRKNEEYGLRLA------SHIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENM 56
Query: 100 RHKDATNFFQSSDTSISLGIQRNP 123
DA + S + + +QR+
Sbjct: 57 SLTDAKTLIERSKGKLKMVVQRDE 80
>pdb|2RCZ|A Chain A, Structure Of The Second Pdz Domain Of Zo-1
pdb|2RCZ|B Chain B, Structure Of The Second Pdz Domain Of Zo-1
Length = 81
Score = 30.0 bits (66), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 18/84 (21%), Positives = 40/84 (47%), Gaps = 8/84 (9%)
Query: 42 VVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAA--AELKRGDIIRKIGDYDSRDL 99
V + + ++ +GLR+A S I + ++ + AA ++ GD++ KI + ++
Sbjct: 4 VTLVKSRKNEEYGLRLA------SHIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENM 57
Query: 100 RHKDATNFFQSSDTSISLGIQRNP 123
DA + S + + +QR+
Sbjct: 58 SLTDAKTLIERSKGKLKMVVQRDE 81
>pdb|2H2B|A Chain A, Crystal Structure Of Zo-1 Pdz1 Bound To A Phage-derived
Ligand (wrrttyl)
Length = 107
Score = 30.0 bits (66), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 40/94 (42%), Gaps = 12/94 (12%)
Query: 52 SWGLRIAGGCD------LDSPIVITKVYPGTPAAAELKRGDIIRKIGDYDSRDLRHKDAT 105
+G+ I+GG D ++ IVI+ V G PA +L+ D + + ++ H A
Sbjct: 20 GFGIAISGGRDNPHFQSGETSIVISDVLKGGPAEGQLQENDRVAMVNGVSMDNVEHAFAV 79
Query: 106 NFFQSSDTSISLGIQRNPPGEKKAASGSRSVTPL 139
+ S + + I+R K G R T L
Sbjct: 80 QQLRKSGKNAKITIRR------KKGGGWRRTTYL 107
>pdb|2DM8|A Chain A, Solution Structure Of The Eighth Pdz Domain Of Human Inad-
Like Protein
Length = 116
Score = 30.0 bits (66), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 6/94 (6%)
Query: 32 PAQPHQNTFTVVIKRPNRHHSWGLRIAGGCDLD-SPIVITKVYPGTPAA--AELKRGDII 88
P P Q ++I+ GL I GG D + IVI +VY AA L GD I
Sbjct: 12 PIVPGQE---MIIEISKGRSGLGLSIVGGKDTPLNAIVIHEVYEEGAAARDGRLWAGDQI 68
Query: 89 RKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRN 122
++ D R+ H++A + + + L + R+
Sbjct: 69 LEVNGVDLRNSSHEEAITALRQTPQKVRLVVYRD 102
>pdb|2H2C|A Chain A, Crystal Structure Of Zo-1 Pdz1 Bound To A Phage-Derived
Ligand (Wrrttwv)
Length = 107
Score = 30.0 bits (66), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 6/78 (7%)
Query: 54 GLRIAGGCD------LDSPIVITKVYPGTPAAAELKRGDIIRKIGDYDSRDLRHKDATNF 107
G+ I+GG D ++ IVI+ V G PA +L+ D + + ++ H A
Sbjct: 22 GIAISGGRDNPHFQSGETSIVISDVLKGGPAEGQLQENDRVAMVNGVSMDNVEHAFAVQQ 81
Query: 108 FQSSDTSISLGIQRNPPG 125
+ S + + I+R G
Sbjct: 82 LRKSGKNAKITIRRKKGG 99
>pdb|2FE5|A Chain A, The Crystal Structure Of The Second Pdz Domain Of Human
Dlg3
Length = 94
Score = 30.0 bits (66), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 9/81 (11%)
Query: 52 SWGLRIAGGCD-----LDSPIVITKVYPGTPAA--AELKRGDIIRKIGDYDSRDLRHKDA 104
G IAGG D+ I ITK+ G A L+ GD + + + + +D+RH++A
Sbjct: 15 GLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEA 74
Query: 105 TNFFQSSDTSISLGIQRNPPG 125
+++ + L + + PG
Sbjct: 75 VASLKNTSDMVYLKVAK--PG 93
>pdb|2H3M|A Chain A, Crystal Structure Of Zo-1 Pdz1
Length = 97
Score = 30.0 bits (66), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 6/76 (7%)
Query: 52 SWGLRIAGGCD------LDSPIVITKVYPGTPAAAELKRGDIIRKIGDYDSRDLRHKDAT 105
+G+ I+GG D ++ IVI+ V G PA +L+ D + + ++ H A
Sbjct: 20 GFGIAISGGRDNPHFQSGETSIVISDVLKGGPAEGQLQENDRVAMVNGVSMDNVEHAFAV 79
Query: 106 NFFQSSDTSISLGIQR 121
+ S + + I+R
Sbjct: 80 QQLRKSGKNAKITIRR 95
>pdb|3CYY|A Chain A, The Crystal Structure Of Zo-1 Pdz2 In Complex With The
Cx43 Peptide
pdb|3CYY|B Chain B, The Crystal Structure Of Zo-1 Pdz2 In Complex With The
Cx43 Peptide
Length = 92
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/83 (21%), Positives = 40/83 (48%), Gaps = 8/83 (9%)
Query: 42 VVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAA--AELKRGDIIRKIGDYDSRDL 99
V + + ++ +GLR+A S I + ++ + AA ++ GD++ KI + ++
Sbjct: 6 VTLVKSAKNEEYGLRLA------SHIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENM 59
Query: 100 RHKDATNFFQSSDTSISLGIQRN 122
DA + S + + +QR+
Sbjct: 60 SLTDAKTLIERSKGKLKMVVQRD 82
>pdb|2RRM|A Chain A, Interplay Between Phosphatidyl-Inositol-Phosphates And
Claudins Upon Binding To The 1st Pdz Domain Of Zonula
Occludens 1
Length = 100
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 6/76 (7%)
Query: 52 SWGLRIAGGCD------LDSPIVITKVYPGTPAAAELKRGDIIRKIGDYDSRDLRHKDAT 105
+G+ I+GG D ++ IVI+ V G PA +L+ D + + ++ H A
Sbjct: 23 GFGIAISGGRDNPHFQSGETSIVISDVLKGGPAEGQLQENDRVAMVNGVSMDNVEHAFAV 82
Query: 106 NFFQSSDTSISLGIQR 121
+ S + + I+R
Sbjct: 83 QQLRKSGKNAKITIRR 98
>pdb|4AMH|A Chain A, Influence Of Circular Permutation On The Folding Pathway
Of A Pdz Domain
pdb|4AMH|B Chain B, Influence Of Circular Permutation On The Folding Pathway
Of A Pdz Domain
Length = 106
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 7/81 (8%)
Query: 54 GLRIAGGCD-----LDSPIVITKVYPGTPAA--AELKRGDIIRKIGDYDSRDLRHKDATN 106
G IAGG D+ I +TK+ G A +L+ GD + + + ++ H++A
Sbjct: 16 GFSIAGGVGNQHWPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVALEEVTHEEAVT 75
Query: 107 FFQSSDTSISLGIQRNPPGEK 127
+++ + L + + GEK
Sbjct: 76 ALKNTSDFVYLKVAKPGSGEK 96
>pdb|2JIL|A Chain A, Crystal Structure Of 2nd Pdz Domain Of Glutamate Receptor
Interacting Protein-1 (Grip1)
pdb|2JIL|B Chain B, Crystal Structure Of 2nd Pdz Domain Of Glutamate Receptor
Interacting Protein-1 (Grip1)
Length = 97
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 6/86 (6%)
Query: 41 TVVIKRPNRHHSWGLRIAGGCDLDS----PIVITKVYPGTPAAAE--LKRGDIIRKIGDY 94
TV + +++G I GG D P+VIT V PG PA E +K GD + +
Sbjct: 4 TVEVTLHKEGNTFGFVIRGGAHDDRNKSRPVVITSVRPGGPADREGTIKPGDRLLSVDGI 63
Query: 95 DSRDLRHKDATNFFQSSDTSISLGIQ 120
H +A + + +L I+
Sbjct: 64 RLLGTTHAEAMSILKQCGQEAALLIE 89
>pdb|2LA8|A Chain A, Solution Structure Of Inad Pdz5 Complexed With Kon-Tiki
Peptide
Length = 106
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Query: 80 AELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPPGEKKAASGSRSVTP 138
++L+RGDII K L + F+ ++ +S+ + R PG + GS S+ P
Sbjct: 42 SKLQRGDIITKFNGDALEGLPFQVCYALFKGANGKVSMEVTRPKPG----SGGSGSLVP 96
>pdb|1Z86|A Chain A, Solution Structure Of The Pdz Domain Of Alpha-Syntrophin
Length = 87
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
Query: 52 SWGLRIAGGCDLDSPIVITKVYPGTPA--AAELKRGDIIRKIGDYDSRDLRHKDATNFFQ 109
G+ I GG + PI+I+K++ G A L GD I + D H +A +
Sbjct: 13 GLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALK 72
Query: 110 SSDTSISLGIQ 120
+ + L ++
Sbjct: 73 KTGKEVVLEVK 83
>pdb|2PDZ|A Chain A, Solution Structure Of The Syntrophin Pdz Domain In Complex
With The Peptide Gvkeslv, Nmr, 15 Structures
Length = 86
Score = 28.5 bits (62), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
Query: 52 SWGLRIAGGCDLDSPIVITKVYPGTPA--AAELKRGDIIRKIGDYDSRDLRHKDATNFFQ 109
G+ I GG + PI+I+K++ G A L GD I + D H +A +
Sbjct: 13 GLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALK 72
Query: 110 SSDTSISLGIQ 120
+ + L ++
Sbjct: 73 KTGKEVVLEVK 83
>pdb|1QAV|A Chain A, Unexpected Modes Of Pdz Domain Scaffolding Revealed By
Structure Of Nnos-Syntrophin Complex
Length = 90
Score = 28.1 bits (61), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
Query: 52 SWGLRIAGGCDLDSPIVITKVYPGTPA--AAELKRGDIIRKIGDYDSRDLRHKDATNFFQ 109
G+ I GG + PI+I+K++ G A L GD I + D H +A +
Sbjct: 17 GLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALK 76
Query: 110 SSDTSISLGIQ 120
+ + L ++
Sbjct: 77 KTGKEVVLEVK 87
>pdb|1Z87|A Chain A, Solution Structure Of The Split Ph-Pdz Supramodule Of
Alpha- Syntrophin
Length = 263
Score = 28.1 bits (61), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Query: 54 GLRIAGGCDLDSPIVITKVYPGTPA--AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSS 111
G+ I GG + PI+I+K++ G A L GD I + D H +A + +
Sbjct: 92 GISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKT 151
Query: 112 DTSISLGIQ 120
+ L ++
Sbjct: 152 GKEVVLEVK 160
>pdb|2QT5|A Chain A, Crystal Structure Of Grip1 Pdz12 In Complex With The Fras1
Peptide
pdb|2QT5|B Chain B, Crystal Structure Of Grip1 Pdz12 In Complex With The Fras1
Peptide
Length = 200
Score = 28.1 bits (61), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 6/86 (6%)
Query: 41 TVVIKRPNRHHSWGLRIAGGCDLDS----PIVITKVYPGTPAAAE--LKRGDIIRKIGDY 94
TV + +++G I GG D P+VIT V PG PA E +K GD + +
Sbjct: 107 TVEVTLHKEGNTFGFVIRGGAHDDRNKSRPVVITCVRPGGPADREGTIKPGDRLLSVDGI 166
Query: 95 DSRDLRHKDATNFFQSSDTSISLGIQ 120
H +A + + +L I+
Sbjct: 167 RLLGTTHAEAMSILKQCGQEATLLIE 192
>pdb|3KHF|A Chain A, The Crystal Structure Of The Pdz Domain Of Human
Microtubule Associated SerineTHREONINE KINASE 3 (MAST3)
pdb|3KHF|B Chain B, The Crystal Structure Of The Pdz Domain Of Human
Microtubule Associated SerineTHREONINE KINASE 3 (MAST3)
Length = 99
Score = 27.7 bits (60), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Query: 68 VITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISL 117
V+ V G+PA A L+ GD+I I L H D S ISL
Sbjct: 37 VVWSVEDGSPAQEAGLRAGDLITHINGESVLGLVHMDVVELLLKSGNKISL 87
>pdb|1PDR|A Chain A, Crystal Structure Of The Third Pdz Domain From The Human
Homolog Of Discs Large Protein
Length = 99
Score = 26.9 bits (58), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Query: 52 SWGLRIAGGCDLDSPIVITKVYPGTPA--AAELKRGDIIRKIGDYDSRDLRHKDATNFFQ 109
G I GG D + I I+ + G PA + EL++GD I + D R H+ A +
Sbjct: 19 GLGFNIVGGEDGEG-IFISFILAGGPADLSGELRKGDRIISVNSVDLRAASHEQAAAALK 77
Query: 110 SSDTSISLGIQRNP 123
++ ++++ Q P
Sbjct: 78 NAGQAVTIVAQYRP 91
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.130 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,087,705
Number of Sequences: 62578
Number of extensions: 239887
Number of successful extensions: 510
Number of sequences better than 100.0: 70
Number of HSP's better than 100.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 465
Number of HSP's gapped (non-prelim): 71
length of query: 201
length of database: 14,973,337
effective HSP length: 94
effective length of query: 107
effective length of database: 9,091,005
effective search space: 972737535
effective search space used: 972737535
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 49 (23.5 bits)