Query psy12310
Match_columns 201
No_of_seqs 230 out of 1741
Neff 7.2
Searched_HMMs 46136
Date Fri Aug 16 15:48:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12310.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12310hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00595 PDZ: PDZ domain (Also 99.6 3.4E-15 7.4E-20 104.9 9.0 79 41-120 1-81 (81)
2 KOG3550|consensus 99.5 3E-14 6.5E-19 110.8 8.0 86 36-123 88-175 (207)
3 KOG3209|consensus 99.4 9E-13 1.9E-17 122.6 9.0 84 37-122 897-982 (984)
4 COG0793 Prc Periplasmic protea 99.4 5E-12 1.1E-16 113.9 10.8 131 50-197 99-233 (406)
5 cd00992 PDZ_signaling PDZ doma 99.3 1.2E-11 2.7E-16 86.1 10.2 79 40-119 2-81 (82)
6 KOG3549|consensus 99.3 3E-12 6.6E-17 111.2 8.4 107 12-123 32-140 (505)
7 smart00228 PDZ Domain present 99.3 4.3E-11 9.3E-16 83.4 11.3 82 40-123 3-85 (85)
8 KOG3551|consensus 99.3 3.6E-11 7.8E-16 105.7 10.8 86 38-124 84-171 (506)
9 cd00136 PDZ PDZ domain, also c 99.2 4.8E-11 1E-15 80.9 8.5 66 52-119 2-69 (70)
10 PLN00049 carboxyl-terminal pro 99.2 1.3E-10 2.9E-15 104.2 12.1 134 50-197 84-224 (389)
11 TIGR00225 prc C-terminal pepti 99.2 2.4E-10 5.3E-15 100.4 10.6 127 51-197 51-181 (334)
12 KOG3209|consensus 99.1 2.7E-10 5.9E-15 106.3 9.6 84 38-123 649-736 (984)
13 PRK11186 carboxy-terminal prot 99.1 4.2E-10 9.1E-15 106.7 11.0 130 51-198 244-384 (667)
14 PF13180 PDZ_2: PDZ domain; PD 99.1 2.9E-10 6.3E-15 80.0 7.2 70 53-125 3-75 (82)
15 KOG3553|consensus 99.1 3.1E-11 6.7E-16 87.8 0.6 71 52-123 36-117 (124)
16 cd00988 PDZ_CTP_protease PDZ d 99.0 5E-09 1.1E-13 73.5 10.1 69 51-122 2-72 (85)
17 KOG3580|consensus 99.0 1.4E-09 3E-14 100.3 7.1 87 38-125 8-100 (1027)
18 KOG3552|consensus 98.8 1.2E-08 2.6E-13 97.6 8.3 78 38-122 55-132 (1298)
19 cd00991 PDZ_archaeal_metallopr 98.8 2.3E-08 4.9E-13 70.0 7.4 60 64-125 9-71 (79)
20 cd00989 PDZ_metalloprotease PD 98.7 1E-07 2.2E-12 65.8 9.1 58 65-124 12-71 (79)
21 KOG1892|consensus 98.7 1.5E-07 3.3E-12 90.7 12.1 86 37-125 932-1022(1629)
22 cd00990 PDZ_glycyl_aminopeptid 98.7 1E-07 2.2E-12 66.1 8.0 67 53-125 3-70 (80)
23 cd00987 PDZ_serine_protease PD 98.6 1.7E-07 3.6E-12 66.1 7.6 58 65-124 24-84 (90)
24 KOG3542|consensus 98.6 8.4E-08 1.8E-12 89.8 6.3 83 38-121 535-618 (1283)
25 cd00986 PDZ_LON_protease PDZ d 98.6 3.4E-07 7.3E-12 63.7 7.5 59 65-125 8-68 (79)
26 KOG3580|consensus 98.6 1.9E-07 4.2E-12 86.4 7.7 82 38-125 198-281 (1027)
27 KOG3651|consensus 98.5 4.1E-07 8.8E-12 78.3 8.4 81 40-121 6-88 (429)
28 KOG3606|consensus 98.5 3.1E-07 6.8E-12 77.9 7.3 86 40-125 160-256 (358)
29 KOG3571|consensus 98.5 8.3E-07 1.8E-11 80.7 9.8 88 37-125 248-342 (626)
30 TIGR01713 typeII_sec_gspC gene 98.4 1.9E-06 4.1E-11 73.5 8.4 71 53-125 179-252 (259)
31 TIGR02037 degP_htrA_DO peripla 98.3 2.1E-06 4.6E-11 77.8 7.7 61 65-125 257-318 (428)
32 PRK10779 zinc metallopeptidase 98.2 1.7E-06 3.6E-11 79.1 6.1 62 65-126 126-188 (449)
33 PRK10139 serine endoprotease; 98.2 3.7E-06 8.1E-11 77.1 7.9 60 64-125 289-351 (455)
34 PRK10779 zinc metallopeptidase 98.2 1.6E-05 3.5E-10 72.7 10.6 58 66-125 222-281 (449)
35 PRK10942 serine endoprotease; 98.2 5.9E-06 1.3E-10 76.1 7.8 61 65-125 311-372 (473)
36 TIGR02038 protease_degS peripl 98.2 4.7E-06 1E-10 74.0 6.8 59 65-125 278-339 (351)
37 PRK10898 serine endoprotease; 98.1 6.4E-06 1.4E-10 73.2 7.5 61 65-125 279-340 (353)
38 TIGR02037 degP_htrA_DO peripla 98.1 7.6E-06 1.6E-10 74.2 7.3 59 65-125 362-423 (428)
39 TIGR00054 RIP metalloprotease 98.1 8E-06 1.7E-10 74.1 7.2 59 65-125 203-263 (420)
40 PRK10139 serine endoprotease; 98.1 1.1E-05 2.3E-10 74.0 7.2 59 65-125 390-449 (455)
41 PRK10942 serine endoprotease; 98.0 1.6E-05 3.4E-10 73.3 7.5 59 65-125 408-467 (473)
42 KOG3605|consensus 97.7 4.5E-05 9.7E-10 71.5 5.0 74 35-115 733-807 (829)
43 TIGR00054 RIP metalloprotease 97.7 7E-05 1.5E-09 68.0 5.8 59 65-125 128-187 (420)
44 TIGR02860 spore_IV_B stage IV 97.6 0.00027 5.9E-09 63.7 8.6 70 49-125 94-173 (402)
45 TIGR03279 cyano_FeS_chp putati 97.6 9.2E-05 2E-09 67.2 4.6 52 69-124 2-55 (433)
46 KOG0606|consensus 97.5 0.00023 5E-09 70.3 7.0 79 41-121 629-715 (1205)
47 KOG3129|consensus 97.5 0.00025 5.4E-09 58.3 6.0 59 67-125 141-202 (231)
48 PF14685 Tricorn_PDZ: Tricorn 97.5 0.00076 1.7E-08 48.4 7.6 58 66-124 13-81 (88)
49 PF04495 GRASP55_65: GRASP55/6 97.4 0.00085 1.9E-08 52.1 8.1 74 50-125 25-104 (138)
50 PRK09681 putative type II secr 97.4 0.00034 7.4E-09 60.1 6.2 45 79-125 222-268 (276)
51 COG0265 DegQ Trypsin-like seri 97.3 0.00055 1.2E-08 60.3 6.8 62 64-125 269-331 (347)
52 KOG0609|consensus 97.0 0.003 6.5E-08 58.4 8.4 81 39-122 123-205 (542)
53 KOG3605|consensus 96.9 0.0026 5.5E-08 60.1 6.6 84 40-124 647-736 (829)
54 COG3975 Predicted protease wit 96.6 0.0041 9E-08 57.5 5.7 63 52-125 452-515 (558)
55 COG3480 SdrC Predicted secrete 96.5 0.007 1.5E-07 52.8 6.4 60 66-125 131-190 (342)
56 KOG3532|consensus 96.4 0.0098 2.1E-07 56.7 7.2 69 49-121 384-453 (1051)
57 KOG1320|consensus 96.4 0.0092 2E-07 54.9 6.6 58 66-125 399-459 (473)
58 KOG3938|consensus 96.4 0.007 1.5E-07 51.7 5.4 81 37-122 125-210 (334)
59 KOG1421|consensus 96.2 0.0076 1.6E-07 57.4 5.2 57 67-125 305-362 (955)
60 COG3031 PulC Type II secretory 96.2 0.025 5.4E-07 47.7 7.6 62 50-125 204-268 (275)
61 KOG1738|consensus 95.3 0.039 8.5E-07 52.0 6.1 71 49-121 211-283 (638)
62 smart00735 ZM ZASP-like motif. 94.6 0.014 3.1E-07 32.3 0.7 21 175-195 5-25 (26)
63 KOG1703|consensus 94.6 0.018 3.9E-07 53.3 1.8 74 52-126 9-83 (479)
64 PF12812 PDZ_1: PDZ-like domai 92.2 0.23 5E-06 34.7 3.8 44 65-110 30-74 (78)
65 KOG4407|consensus 90.8 0.26 5.6E-06 50.4 3.8 86 35-123 43-154 (1973)
66 COG0750 Predicted membrane-ass 88.7 1.2 2.6E-05 39.3 6.1 53 68-121 132-188 (375)
67 KOG3834|consensus 88.6 0.92 2E-05 41.4 5.3 57 66-123 16-74 (462)
68 KOG0792|consensus 88.0 0.5 1.1E-05 47.3 3.5 62 50-111 715-797 (1144)
69 KOG4371|consensus 87.6 0.85 1.8E-05 45.8 4.8 82 38-125 1147-1230(1332)
70 KOG2921|consensus 84.6 0.9 2E-05 41.1 3.1 36 64-99 219-256 (484)
71 KOG4407|consensus 80.4 0.77 1.7E-05 47.1 1.1 56 66-121 144-200 (1973)
72 KOG4371|consensus 64.7 7.4 0.00016 39.4 3.6 72 50-122 1256-1329(1332)
73 PF11874 DUF3394: Domain of un 57.7 35 0.00076 27.7 5.9 36 53-91 113-149 (183)
74 KOG3834|consensus 55.5 50 0.0011 30.4 7.0 54 67-123 111-168 (462)
75 KOG1421|consensus 55.4 24 0.00052 34.6 5.1 47 62-111 859-906 (955)
76 KOG3686|consensus 43.1 38 0.00081 33.3 4.5 65 38-111 592-657 (740)
77 PF08967 DUF1884: Domain of un 42.7 18 0.00038 25.6 1.7 16 185-200 14-29 (85)
78 COG5233 GRH1 Peripheral Golgi 40.0 15 0.00032 32.7 1.1 32 66-97 64-96 (417)
79 cd07561 Peptidase_S41_CPP_like 39.6 21 0.00045 30.3 2.0 32 167-198 62-95 (256)
80 PRK13810 orotate phosphoribosy 34.2 76 0.0017 25.6 4.4 38 79-116 116-153 (187)
81 PF13812 PPR_3: Pentatricopept 30.0 45 0.00098 17.9 1.8 15 185-199 20-34 (34)
82 COG0461 PyrE Orotate phosphori 29.9 1E+02 0.0022 25.4 4.5 38 79-116 106-143 (201)
83 TIGR01744 XPRTase xanthine pho 29.0 91 0.002 25.2 4.1 42 81-122 113-157 (191)
84 PRK09219 xanthine phosphoribos 26.3 76 0.0017 25.7 3.2 35 81-115 113-147 (189)
85 COG1625 Fe-S oxidoreductase, r 26.0 57 0.0012 29.9 2.5 35 67-101 3-39 (414)
86 PRK04199 rpl10e 50S ribosomal 25.5 90 0.002 25.1 3.4 34 75-111 117-152 (172)
87 cd01433 Ribosomal_L16_L10e Rib 25.4 60 0.0013 23.8 2.2 33 79-115 73-105 (112)
88 PRK09203 rplP 50S ribosomal pr 24.9 62 0.0013 24.9 2.3 31 79-114 94-124 (138)
89 PRK05500 bifunctional orotidin 21.3 1.5E+02 0.0033 27.7 4.4 38 79-116 387-424 (477)
90 TIGR00756 PPR pentatricopeptid 21.2 96 0.0021 16.2 2.1 18 184-201 18-35 (35)
91 TIGR01164 rplP_bact ribosomal 20.8 81 0.0018 23.9 2.2 30 79-113 93-122 (126)
No 1
>PF00595 PDZ: PDZ domain (Also known as DHR or GLGF) Coordinates are not yet available; InterPro: IPR001478 PDZ domains are found in diverse signalling proteins in bacteria, yeasts, plants, insects and vertebrates [, ]. PDZ domains can occur in one or multiple copies and are nearly always found in cytoplasmic proteins. They bind either the carboxyl-terminal sequences of proteins or internal peptide sequences []. In most cases, interaction between a PDZ domain and its target is constitutive, with a binding affinity of 1 to 10 microns. However, agonist-dependent activation of cell surface receptors is sometimes required to promote interaction with a PDZ protein. PDZ domain proteins are frequently associated with the plasma membrane, a compartment where high concentrations of phosphatidylinositol 4,5-bisphosphate (PIP2) are found. Direct interaction between PIP2 and a subset of class II PDZ domains (syntenin, CASK, Tiam-1) has been demonstrated. PDZ domains consist of 80 to 90 amino acids comprising six beta-strands (beta-A to beta-F) and two alpha-helices, A and B, compactly arranged in a globular structure. Peptide binding of the ligand takes place in an elongated surface groove as an anti-parallel beta-strand interacts with the beta-B strand and the B helix. The structure of PDZ domains allows binding to a free carboxylate group at the end of a peptide through a carboxylate-binding loop between the beta-A and beta-B strands.; GO: 0005515 protein binding; PDB: 3AXA_A 1WF8_A 1QAV_B 1QAU_A 1B8Q_A 1MC7_A 2KAW_A 1I16_A 1VB7_A 1WI4_A ....
Probab=99.61 E-value=3.4e-15 Score=104.86 Aligned_cols=79 Identities=29% Similarity=0.570 Sum_probs=72.0
Q ss_pred EEEEecCCCCceeEEEEEeecCCC-CCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEEEE
Q psy12310 41 TVVIKRPNRHHSWGLRIAGGCDLD-SPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLG 118 (201)
Q Consensus 41 ~V~L~r~~~~~~~Gf~i~gG~~~~-~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~v~L~ 118 (201)
+|+|.|. ...+|||.+.++.+.. .+++|..|.++||| .+||++||+|++|||.++.++++.+++.+++.++..|+|+
T Consensus 1 ~v~l~k~-~~~~lG~~l~~~~~~~~~~~~V~~v~~~~~a~~~gl~~GD~Il~INg~~v~~~~~~~~~~~l~~~~~~v~L~ 79 (81)
T PF00595_consen 1 QVTLEKS-GNGPLGFTLRGGSDNDEKGVFVSSVVPGSPAERAGLKVGDRILEINGQSVRGMSHDEVVQLLKSASNPVTLT 79 (81)
T ss_dssp EEEEEES-TTSBSSEEEEEESTSSSEEEEEEEECTTSHHHHHTSSTTEEEEEETTEESTTSBHHHHHHHHHHSTSEEEEE
T ss_pred CEEEEeC-CCCCcCEEEEecCCCCcCCEEEEEEeCCChHHhcccchhhhhheeCCEeCCCCCHHHHHHHHHCCCCcEEEE
Confidence 4788886 6799999999998853 68999999999999 7889999999999999999999999999999998899998
Q ss_pred EE
Q psy12310 119 IQ 120 (201)
Q Consensus 119 v~ 120 (201)
|+
T Consensus 80 V~ 81 (81)
T PF00595_consen 80 VQ 81 (81)
T ss_dssp EE
T ss_pred EC
Confidence 85
No 2
>KOG3550|consensus
Probab=99.53 E-value=3e-14 Score=110.78 Aligned_cols=86 Identities=26% Similarity=0.495 Sum_probs=78.7
Q ss_pred CCceEEEEEecCCCCceeEEEEEeecCCCCCcEEEEECCCCcc--ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCC
Q psy12310 36 HQNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA--AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDT 113 (201)
Q Consensus 36 ~~~~~~V~L~r~~~~~~~Gf~i~gG~~~~~pi~V~~V~~gspA--~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~ 113 (201)
..+.+.|.|.+.+ .++||.+.||++.+.||+|++|+||+.| .+||+.||.+++|||+++++--|+.|+.++|.+-.
T Consensus 88 hahprvvelpktd--eglgfnvmggkeqnspiyisriipggvadrhgglkrgdqllsvngvsvege~hekavellkaa~g 165 (207)
T KOG3550|consen 88 HAHPRVVELPKTD--EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEHHEKAVELLKAAVG 165 (207)
T ss_pred CCCCceeecCccc--cccceeeccCcccCCceEEEeecCCccccccCcccccceeEeecceeecchhhHHHHHHHHHhcC
Confidence 4467789998865 7799999999999999999999999999 58999999999999999999999999999999989
Q ss_pred eEEEEEEeCC
Q psy12310 114 SISLGIQRNP 123 (201)
Q Consensus 114 ~v~L~v~R~~ 123 (201)
.|.|+|....
T Consensus 166 svklvvrytp 175 (207)
T KOG3550|consen 166 SVKLVVRYTP 175 (207)
T ss_pred cEEEEEecCh
Confidence 9999987654
No 3
>KOG3209|consensus
Probab=99.40 E-value=9e-13 Score=122.55 Aligned_cols=84 Identities=20% Similarity=0.449 Sum_probs=75.9
Q ss_pred CceEEEEEecCCCCceeEEEEEeecCCCCCcEEEEECCCCcc--ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCe
Q psy12310 37 QNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA--AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTS 114 (201)
Q Consensus 37 ~~~~~V~L~r~~~~~~~Gf~i~gG~~~~~pi~V~~V~~gspA--~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~ 114 (201)
...++|+|.| +..+|||+|+||+++..++||.++.+++|| .+.++.||+|+.|||..+.+|+|..|+++||.-|..
T Consensus 897 ~~~~~VelEr--G~kGFGFSiRGGreynM~LfVLRlAeDGPA~rdGrm~VGDqi~eINGesTkgmtH~rAIelIk~gg~~ 974 (984)
T KOG3209|consen 897 GDLYTVELER--GAKGFGFSIRGGREYNMDLFVLRLAEDGPAIRDGRMRVGDQITEINGESTKGMTHDRAIELIKQGGRR 974 (984)
T ss_pred CCeeEEEeec--cccccceEeecccccccceEEEEeccCCCccccCceeecceEEEecCcccCCCcHHHHHHHHHhCCeE
Confidence 3688999999 468899999999999999999999999999 578999999999999999999999999999988777
Q ss_pred EEEEEEeC
Q psy12310 115 ISLGIQRN 122 (201)
Q Consensus 115 v~L~v~R~ 122 (201)
+.|.++|+
T Consensus 975 vll~Lr~g 982 (984)
T KOG3209|consen 975 VLLLLRRG 982 (984)
T ss_pred EEEEeccC
Confidence 77666543
No 4
>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]
Probab=99.35 E-value=5e-12 Score=113.89 Aligned_cols=131 Identities=18% Similarity=0.191 Sum_probs=107.0
Q ss_pred CceeEEEEEeecCCCCCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCC-CCeEEEEEEeCCCCCc
Q psy12310 50 HHSWGLRIAGGCDLDSPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSS-DTSISLGIQRNPPGEK 127 (201)
Q Consensus 50 ~~~~Gf~i~gG~~~~~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~-g~~v~L~v~R~~~~~~ 127 (201)
..+.|..+.-... ..+.|.++.+++|| .+||++||+|++|||.++.++...+++..|++. |+.|+|++.|.+..++
T Consensus 99 ~~GiG~~i~~~~~--~~~~V~s~~~~~PA~kagi~~GD~I~~IdG~~~~~~~~~~av~~irG~~Gt~V~L~i~r~~~~k~ 176 (406)
T COG0793 99 FGGIGIELQMEDI--GGVKVVSPIDGSPAAKAGIKPGDVIIKIDGKSVGGVSLDEAVKLIRGKPGTKVTLTILRAGGGKP 176 (406)
T ss_pred ccceeEEEEEecC--CCcEEEecCCCChHHHcCCCCCCEEEEECCEEccCCCHHHHHHHhCCCCCCeEEEEEEEcCCCce
Confidence 3557777765442 57899999999999 899999999999999999999999999999888 9999999999865667
Q ss_pred cccccccCCCCCCCCccccccccccccccccccccccccCCcccccc--cccCCCcccchHHHHHHHHHhcC
Q psy12310 128 KAASGSRSVTPLPIVDYCQKESKASSASMSVVNSFHDFLDHQHVHRA--QAVASPFELSSEHDLNYVIKEQL 197 (201)
Q Consensus 128 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~ig~~--~qf~~p~~~~s~~~i~~~~~~~~ 197 (201)
......|..+.+..+..... +.. ..+..|||+ .+|+......++.++.+|+++++
T Consensus 177 ~~v~l~Re~i~l~~v~~~~~--------------~~~-~~~~~IGyI~I~~F~~~~~~~~~~al~~L~~~~~ 233 (406)
T COG0793 177 FTVTLTREEIELEDVAAKEK--------------VEE-GGKGRIGYIRIPSFGEGTYEDLEKALDELKKQGA 233 (406)
T ss_pred eEEEEEEEEEeccceeeeee--------------eec-CCCceEEEEEecccccchHHHHHHHHHHHHhcCC
Confidence 77777788887777765100 111 224459997 99999999999999999999885
No 5
>cd00992 PDZ_signaling PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases.
Probab=99.35 E-value=1.2e-11 Score=86.09 Aligned_cols=79 Identities=27% Similarity=0.501 Sum_probs=67.7
Q ss_pred EEEEEecCCCCceeEEEEEeecCCCCCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEEEE
Q psy12310 40 FTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLG 118 (201)
Q Consensus 40 ~~V~L~r~~~~~~~Gf~i~gG~~~~~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~v~L~ 118 (201)
+.+.+.+. ...+|||.+.++.+...+++|..|.++||| .++|++||+|++|||.++.++++.+....++.....+.|+
T Consensus 2 ~~~~l~~~-~~~~~G~~~~~~~~~~~~~~V~~v~~~s~a~~~gl~~GD~I~~ing~~i~~~~~~~~~~~l~~~~~~v~l~ 80 (82)
T cd00992 2 RTVTLRKD-PGGGLGFSLRGGKDSGGGIFVSRVEPGGPAERGGLRVGDRILEVNGVSVEGLTHEEAVELLKNSGDEVTLT 80 (82)
T ss_pred EEEEEEeC-CCCCcCEEEeCcccCCCCeEEEEECCCChHHhCCCCCCCEEEEECCEEcCccCHHHHHHHHHhCCCeEEEE
Confidence 35777775 368899999987654568999999999999 8999999999999999999999999999998876677776
Q ss_pred E
Q psy12310 119 I 119 (201)
Q Consensus 119 v 119 (201)
+
T Consensus 81 v 81 (82)
T cd00992 81 V 81 (82)
T ss_pred E
Confidence 5
No 6
>KOG3549|consensus
Probab=99.34 E-value=3e-12 Score=111.18 Aligned_cols=107 Identities=25% Similarity=0.450 Sum_probs=92.3
Q ss_pred hhhhhhccCCccccccCCCCCCCCCCceEEEEEecCCCCceeEEEEEeecCCCCCcEEEEECCCCcc-c-cCCCCCCEEE
Q psy12310 12 SLDALTSTNQALIPTRKSGKPAQPHQNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA-A-AELKRGDIIR 89 (201)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~L~r~~~~~~~Gf~i~gG~~~~~pi~V~~V~~gspA-~-agL~~GD~Il 89 (201)
..|.|+.+.|...+. +|.|.... +++|++.|. .-++||++|.||.++..|++|++|.++-.| . +-|..||-|+
T Consensus 32 tke~L~iQkqdVvcv--sG~p~~s~--eRtVtirRQ-~vGGlGLSIKGGaEHn~PvviSkI~kdQaAd~tG~LFvGDAil 106 (505)
T KOG3549|consen 32 TKELLSIQKQDVVCV--SGPPMESK--ERTVTIRRQ-KVGGLGLSIKGGAEHNLPVVISKIYKDQAADITGQLFVGDAIL 106 (505)
T ss_pred HHHHhhhhccceEec--CCCCccCC--ceeEEEEee-ecCcceeeeccccccCccEEeehhhhhhhhhhcCceEeeeeeE
Confidence 357888899988887 56666654 446777765 467899999999999999999999999999 4 6699999999
Q ss_pred EECCEECCCCCHHHHHHHHhCCCCeEEEEEEeCC
Q psy12310 90 KIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNP 123 (201)
Q Consensus 90 ~Ing~~v~~~~~~~av~~ik~~g~~v~L~v~R~~ 123 (201)
+|||..+..++|++++.+++.+|..|+|+|..-.
T Consensus 107 qvNGi~v~~c~HeevV~iLRNAGdeVtlTV~~lr 140 (505)
T KOG3549|consen 107 QVNGIYVTACPHEEVVNILRNAGDEVTLTVKHLR 140 (505)
T ss_pred EeccEEeecCChHHHHHHHHhcCCEEEEEeHhhh
Confidence 9999999999999999999999999999987543
No 7
>smart00228 PDZ Domain present in PSD-95, Dlg, and ZO-1/2. Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities.
Probab=99.31 E-value=4.3e-11 Score=83.43 Aligned_cols=82 Identities=27% Similarity=0.494 Sum_probs=69.7
Q ss_pred EEEEEecCCCCceeEEEEEeecCCCCCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEEEE
Q psy12310 40 FTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLG 118 (201)
Q Consensus 40 ~~V~L~r~~~~~~~Gf~i~gG~~~~~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~v~L~ 118 (201)
..+.+.+.. ..|||.+..+.....+++|..|.++||| .+||++||+|++|||..+.++++.+....++..+..+.|+
T Consensus 3 ~~~~~~~~~--~~~G~~~~~~~~~~~~~~i~~v~~~s~a~~~gl~~GD~I~~In~~~v~~~~~~~~~~~~~~~~~~~~l~ 80 (85)
T smart00228 3 RLVELEKGG--GGLGFSLVGGKDEGGGVVVSSVVPGSPAAKAGLKVGDVILEVNGTSVEGLTHLEAVDLLKKAGGKVTLT 80 (85)
T ss_pred EEEEEEECC--CcccEEEECCCCCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEE
Confidence 457777763 7899999876543368999999999999 8999999999999999999999998888887777799999
Q ss_pred EEeCC
Q psy12310 119 IQRNP 123 (201)
Q Consensus 119 v~R~~ 123 (201)
+.|.+
T Consensus 81 i~r~~ 85 (85)
T smart00228 81 VLRGG 85 (85)
T ss_pred EEeCC
Confidence 98863
No 8
>KOG3551|consensus
Probab=99.27 E-value=3.6e-11 Score=105.66 Aligned_cols=86 Identities=24% Similarity=0.388 Sum_probs=77.1
Q ss_pred ceEEEEEecCCCCceeEEEEEeecCCCCCcEEEEECCCCcc-c-cCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeE
Q psy12310 38 NTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA-A-AELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSI 115 (201)
Q Consensus 38 ~~~~V~L~r~~~~~~~Gf~i~gG~~~~~pi~V~~V~~gspA-~-agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~v 115 (201)
..++|++.|. ..+++|++|.||++...||.|++|++|-.| + ..|..||.|++|||.++.+.+|++|+..+|++|..|
T Consensus 84 ~~R~V~V~K~-d~gGLGISIKGGreNkMPIlISKIFkGlAADQt~aL~~gDaIlSVNG~dL~~AtHdeAVqaLKraGkeV 162 (506)
T KOG3551|consen 84 AERRVRVVKQ-DAGGLGISIKGGRENKMPILISKIFKGLAADQTGALFLGDAILSVNGEDLRDATHDEAVQALKRAGKEV 162 (506)
T ss_pred ccceeEEEEe-cCCcceEEeecCcccCCceehhHhccccccccccceeeccEEEEecchhhhhcchHHHHHHHHhhCcee
Confidence 4577888776 468899999999999999999999999999 6 469999999999999999999999999999999999
Q ss_pred EEEEEeCCC
Q psy12310 116 SLGIQRNPP 124 (201)
Q Consensus 116 ~L~v~R~~~ 124 (201)
.|.|+.-.+
T Consensus 163 ~levKy~RE 171 (506)
T KOG3551|consen 163 LLEVKYMRE 171 (506)
T ss_pred eeeeeeehh
Confidence 888875443
No 9
>cd00136 PDZ PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(pos
Probab=99.25 E-value=4.8e-11 Score=80.90 Aligned_cols=66 Identities=29% Similarity=0.599 Sum_probs=59.1
Q ss_pred eeEEEEEeecCCCCCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCC-CCeEEEEE
Q psy12310 52 SWGLRIAGGCDLDSPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSS-DTSISLGI 119 (201)
Q Consensus 52 ~~Gf~i~gG~~~~~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~-g~~v~L~v 119 (201)
++||.+.++.+ .+++|..|.+++|| .+||++||+|++|||.++.++++.++..+++.. +..+.|++
T Consensus 2 ~~G~~~~~~~~--~~~~V~~v~~~s~a~~~gl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v 69 (70)
T cd00136 2 GLGFSIRGGTE--GGVVVLSVEPGSPAERAGLQAGDVILAVNGTDVKNLTLEDVAELLKKEVGEKVTLTV 69 (70)
T ss_pred CccEEEecCCC--CCEEEEEeCCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhhCCCCeEEEEE
Confidence 58999987665 47999999999999 899999999999999999999999999999876 58888876
No 10
>PLN00049 carboxyl-terminal processing protease; Provisional
Probab=99.22 E-value=1.3e-10 Score=104.19 Aligned_cols=134 Identities=16% Similarity=0.182 Sum_probs=94.4
Q ss_pred CceeEEEEEeecCC---CCCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCC-CCeEEEEEEeCCC
Q psy12310 50 HHSWGLRIAGGCDL---DSPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSS-DTSISLGIQRNPP 124 (201)
Q Consensus 50 ~~~~Gf~i~gG~~~---~~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~-g~~v~L~v~R~~~ 124 (201)
..++|+.+.-.... ..+++|..|.++||| .+||++||+|++|||.++.+++..++..++++. +..+.|+|.|++.
T Consensus 84 ~~GiG~~~~~~~~~~~~~~g~~V~~V~~~SPA~~aGl~~GD~Iv~InG~~v~~~~~~~~~~~l~g~~g~~v~ltv~r~g~ 163 (389)
T PLN00049 84 VTGVGLEVGYPTGSDGPPAGLVVVAPAPGGPAARAGIRPGDVILAIDGTSTEGLSLYEAADRLQGPEGSSVELTLRRGPE 163 (389)
T ss_pred ceEEEEEEEEccCCCCccCcEEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCCEEEEEEEECCE
Confidence 35577776432221 136899999999999 899999999999999999998888877777764 8899999999764
Q ss_pred CCccccccccCCCCCCCCccccccccccccccccccccccccCCcccccc--cccCCCcccchHHHHHHHHHhcC
Q psy12310 125 GEKKAASGSRSVTPLPIVDYCQKESKASSASMSVVNSFHDFLDHQHVHRA--QAVASPFELSSEHDLNYVIKEQL 197 (201)
Q Consensus 125 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~ig~~--~qf~~p~~~~s~~~i~~~~~~~~ 197 (201)
. ......|.....+++.+... ..... ..++.+|||+ ..|+........++++++.++++
T Consensus 164 ~--~~~~l~r~~v~~~~v~~~~~-----------~~~~~-~~~~~~IgYi~i~~F~~~~~~~~~~~l~~l~~~~~ 224 (389)
T PLN00049 164 T--RLVTLTREKVSLNPVKSRLC-----------EVPGP-GAGSPKIGYIKLTTFNQNASSAVKEAIETLRANGV 224 (389)
T ss_pred E--EEEEEEeeeEeccceeeEEE-----------eeccc-cCCCCCEEEEEeccccchhHHHHHHHHHHHHHCCC
Confidence 3 23333344444444432110 00001 1234589997 89999888888999999988775
No 11
>TIGR00225 prc C-terminal peptidase (prc). A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database.
Probab=99.16 E-value=2.4e-10 Score=100.39 Aligned_cols=127 Identities=23% Similarity=0.281 Sum_probs=89.3
Q ss_pred ceeEEEEEeecCCCCCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhC-CCCeEEEEEEeCCCCCcc
Q psy12310 51 HSWGLRIAGGCDLDSPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQS-SDTSISLGIQRNPPGEKK 128 (201)
Q Consensus 51 ~~~Gf~i~gG~~~~~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~-~g~~v~L~v~R~~~~~~~ 128 (201)
.++|+.+.-- ..+++|..|.++||| .+||++||+|++|||.++.+++..+...+++. .+..+.|++.|++.....
T Consensus 51 ~~lG~~~~~~---~~~~~V~~V~~~spA~~aGL~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~R~g~~~~~ 127 (334)
T TIGR00225 51 EGIGIQVGMD---DGEIVIVSPFEGSPAEKAGIKPGDKIIKINGKSVAGMSLDDAVALIRGKKGTKVSLEILRAGKSKPL 127 (334)
T ss_pred EEEEEEEEEE---CCEEEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHhccCCCCCEEEEEEEeCCCCceE
Confidence 4577777542 236899999999999 89999999999999999999876677666655 488999999998755333
Q ss_pred ccccccCCCCCCCCccccccccccccccccccccccccCCcccccc--cccCCCcccchHHHHHHHHHhcC
Q psy12310 129 AASGSRSVTPLPIVDYCQKESKASSASMSVVNSFHDFLDHQHVHRA--QAVASPFELSSEHDLNYVIKEQL 197 (201)
Q Consensus 129 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~ig~~--~qf~~p~~~~s~~~i~~~~~~~~ 197 (201)
.....+.....+.+. ..+. ..++.+|||+ ..|.........+++.+|.++++
T Consensus 128 ~v~l~~~~~~~~~v~----------------~~~~-~~~~~~igYi~i~~f~~~~~~~~~~~l~~l~~~~~ 181 (334)
T TIGR00225 128 TFTLKRDRIELQTVK----------------ASVK-KVGGKSVGYIRISSFSEHTTEDVKKALDKLEKKNA 181 (334)
T ss_pred EEEEEEEEeeccceE----------------EEEE-cCCCcEEEEEEEEecccchHHHHHHHHHHHHhccC
Confidence 333222221111111 1111 1335679997 88988887788888888877654
No 12
>KOG3209|consensus
Probab=99.12 E-value=2.7e-10 Score=106.32 Aligned_cols=84 Identities=23% Similarity=0.460 Sum_probs=76.3
Q ss_pred ceEEEEEecCCCCceeEEEEEeecCCCCCcEEEEECCCCcc--ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCC--CC
Q psy12310 38 NTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA--AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSS--DT 113 (201)
Q Consensus 38 ~~~~V~L~r~~~~~~~Gf~i~gG~~~~~pi~V~~V~~gspA--~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~--g~ 113 (201)
+...|-|.|. ..+|||+|.||-+.+.||+|..|++.+.| ++.|++||.|+.|+|.+|.+.+|.+++.+|..+ ..
T Consensus 649 k~ldV~L~rk--esGFGFRiLGG~ep~qpi~iG~Iv~lGaAe~DGRL~~gDElv~iDG~pV~GksH~~vv~Lm~~AArng 726 (984)
T KOG3209|consen 649 KELDVFLRRK--ESGFGFRILGGDEPGQPIYIGAIVPLGAAEEDGRLREGDELVCIDGIPVEGKSHSEVVDLMEAAARNG 726 (984)
T ss_pred cceeEEEEee--ccccceEEecCCCCCCeeEEeeeeecccccccCcccCCCeEEEecCeeccCccHHHHHHHHHHHHhcC
Confidence 6778999985 47899999999999999999999999999 588999999999999999999999999999755 67
Q ss_pred eEEEEEEeCC
Q psy12310 114 SISLGIQRNP 123 (201)
Q Consensus 114 ~v~L~v~R~~ 123 (201)
.|.|+|+|.-
T Consensus 727 hV~LtVRRkv 736 (984)
T KOG3209|consen 727 HVNLTVRRKV 736 (984)
T ss_pred ceEEEEeeee
Confidence 8999998853
No 13
>PRK11186 carboxy-terminal protease; Provisional
Probab=99.12 E-value=4.2e-10 Score=106.74 Aligned_cols=130 Identities=18% Similarity=0.191 Sum_probs=92.9
Q ss_pred ceeEEEEEeecCCCCCcEEEEECCCCcc-cc-CCCCCCEEEEEC--C---EECCCCCHHHHHHHHhCC-CCeEEEEEEeC
Q psy12310 51 HSWGLRIAGGCDLDSPIVITKVYPGTPA-AA-ELKRGDIIRKIG--D---YDSRDLRHKDATNFFQSS-DTSISLGIQRN 122 (201)
Q Consensus 51 ~~~Gf~i~gG~~~~~pi~V~~V~~gspA-~a-gL~~GD~Il~In--g---~~v~~~~~~~av~~ik~~-g~~v~L~v~R~ 122 (201)
.+.|+.+.-- ...++|..|.+|||| .+ ||++||+|++|| | .++.+++..+++.+|++. |..|.|+|.|.
T Consensus 244 ~GIGa~l~~~---~~~~~V~~vipGsPA~ka~gLk~GD~IlaVn~~g~~~~dv~g~~~~~vv~lirG~~Gt~V~LtV~r~ 320 (667)
T PRK11186 244 EGIGAVLQMD---DDYTVINSLVAGGPAAKSKKLSVGDKIVGVGQDGKPIVDVIGWRLDDVVALIKGPKGSKVRLEILPA 320 (667)
T ss_pred eEEEEEEEEe---CCeEEEEEccCCChHHHhCCCCCCCEEEEECCCCCcccccccCCHHHHHHHhcCCCCCEEEEEEEeC
Confidence 4567776542 235899999999999 76 999999999999 4 356688889999999887 89999999985
Q ss_pred CC-CCccccccccCCCCCCCCccccccccccccccccccccccccCCcccccc--cccCCCcccchHHHHHHHHHhcCC
Q psy12310 123 PP-GEKKAASGSRSVTPLPIVDYCQKESKASSASMSVVNSFHDFLDHQHVHRA--QAVASPFELSSEHDLNYVIKEQLG 198 (201)
Q Consensus 123 ~~-~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~ig~~--~qf~~p~~~~s~~~i~~~~~~~~~ 198 (201)
+. .........|....++.... ..... ..++.+|||+ ..|...+...+.+++++|.++++.
T Consensus 321 ~~~~~~~~vtl~R~~i~l~~~~~--------------k~~v~-~~~~~kIGYI~I~sF~~~~~~d~~~~l~~l~~~~v~ 384 (667)
T PRK11186 321 GKGTKTRIVTLTRDKIRLEDRAV--------------KMSVK-TVGGEKVGVLDIPGFYVGLTDDVKKQLQKLEKQNVS 384 (667)
T ss_pred CCCCceEEEEEEeeeecccccce--------------EEEEE-ecCCCcEEEEEecccccchHHHHHHHHHHHHHCCCC
Confidence 42 23344444454443322110 00111 1235689997 899998888999999999988763
No 14
>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C ....
Probab=99.11 E-value=2.9e-10 Score=80.00 Aligned_cols=70 Identities=26% Similarity=0.414 Sum_probs=53.6
Q ss_pred eEEEEEeecCCCCCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHH--hCCCCeEEEEEEeCCCC
Q psy12310 53 WGLRIAGGCDLDSPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFF--QSSDTSISLGIQRNPPG 125 (201)
Q Consensus 53 ~Gf~i~gG~~~~~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~i--k~~g~~v~L~v~R~~~~ 125 (201)
+|+.+..-.. ..+++|..|.++||| .+||++||+|++|||.++.++.+.. ..+ ...+..+.|++.|+++.
T Consensus 3 lGv~~~~~~~-~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~--~~l~~~~~g~~v~l~v~R~g~~ 75 (82)
T PF13180_consen 3 LGVTVQNLSD-TGGVVVVSVIPGSPAAKAGLQPGDIILAINGKPVNSSEDLV--NILSKGKPGDTVTLTVLRDGEE 75 (82)
T ss_dssp -SEEEEECSC-SSSEEEEEESTTSHHHHTTS-TTEEEEEETTEESSSHHHHH--HHHHCSSTTSEEEEEEEETTEE
T ss_pred ECeEEEEccC-CCeEEEEEeCCCCcHHHCCCCCCcEEEEECCEEcCCHHHHH--HHHHhCCCCCEEEEEEEECCEE
Confidence 5666654332 357999999999999 9999999999999999997764443 344 34489999999998754
No 15
>KOG3553|consensus
Probab=99.06 E-value=3.1e-11 Score=87.78 Aligned_cols=71 Identities=28% Similarity=0.456 Sum_probs=61.1
Q ss_pred eeEEEEEeecCC----------CCCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEEEEEE
Q psy12310 52 SWGLRIAGGCDL----------DSPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQ 120 (201)
Q Consensus 52 ~~Gf~i~gG~~~----------~~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~v~L~v~ 120 (201)
-+||.|-||.|+ +.+++|.+|.+|||| .|||+.+|.|++|||.+..-++|++|++.|+.. ..+.+.|.
T Consensus 36 ~~GFkIGGGIDQDp~k~Pf~ytD~GiYvT~V~eGsPA~~AGLrihDKIlQvNG~DfTMvTHd~Avk~i~k~-~vl~mLVa 114 (124)
T KOG3553|consen 36 ILGFKIGGGIDQDPSKNPFSYTDKGIYVTRVSEGSPAEIAGLRIHDKILQVNGWDFTMVTHDQAVKRITKE-EVLRMLVA 114 (124)
T ss_pred EEEEEeccccCCCcccCCCCcCCccEEEEEeccCChhhhhcceecceEEEecCceeEEEEhHHHHHHhhHh-HHHHHHHH
Confidence 389999999875 458999999999999 899999999999999999999999999998764 55666665
Q ss_pred eCC
Q psy12310 121 RNP 123 (201)
Q Consensus 121 R~~ 123 (201)
|.+
T Consensus 115 R~~ 117 (124)
T KOG3553|consen 115 RQS 117 (124)
T ss_pred hhc
Confidence 543
No 16
>cd00988 PDZ_CTP_protease PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=99.01 E-value=5e-09 Score=73.53 Aligned_cols=69 Identities=33% Similarity=0.522 Sum_probs=58.3
Q ss_pred ceeEEEEEeecCCCCCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCC-CCeEEEEEEeC
Q psy12310 51 HSWGLRIAGGCDLDSPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSS-DTSISLGIQRN 122 (201)
Q Consensus 51 ~~~Gf~i~gG~~~~~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~-g~~v~L~v~R~ 122 (201)
.++||.+.-. ..+++|..|.+++|| .+||++||+|++|||.++.++++.+....++.. +..+.|++.|.
T Consensus 2 ~~lG~~~~~~---~~~~~V~~v~~~s~a~~~gl~~GD~I~~vng~~i~~~~~~~~~~~l~~~~~~~i~l~v~r~ 72 (85)
T cd00988 2 GGIGLELKYD---DGGLVITSVLPGSPAAKAGIKAGDIIVAIDGEPVDGLSLEDVVKLLRGKAGTKVRLTLKRG 72 (85)
T ss_pred eEEEEEEEEc---CCeEEEEEecCCCCHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCEEEEEEEcC
Confidence 3577777542 357999999999999 899999999999999999999778887777654 78899999987
No 17
>KOG3580|consensus
Probab=98.96 E-value=1.4e-09 Score=100.32 Aligned_cols=87 Identities=24% Similarity=0.424 Sum_probs=78.1
Q ss_pred ceEEEEEecCCCCceeEEEEEeecCC------CCCcEEEEECCCCccccCCCCCCEEEEECCEECCCCCHHHHHHHHhCC
Q psy12310 38 NTFTVVIKRPNRHHSWGLRIAGGCDL------DSPIVITKVYPGTPAAAELKRGDIIRKIGDYDSRDLRHKDATNFFQSS 111 (201)
Q Consensus 38 ~~~~V~L~r~~~~~~~Gf~i~gG~~~------~~pi~V~~V~~gspA~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~ 111 (201)
+..+|+|.|+ ...+||+.|.||.+. .+-++|+.|.||+||++.|+.+|.|+.|||+.+.+..|.-|+..++.+
T Consensus 8 EQhTvTL~kd-p~rGFGIAiSGGRDnPhf~~getSiViSDVlpGGPAeG~LQenDrvvMVNGvsMenv~haFAvQqLrks 86 (1027)
T KOG3580|consen 8 EQHTVTLQKD-PKRGFGIAISGGRDNPHFENGETSIVISDVLPGGPAEGLLQENDRVVMVNGVSMENVLHAFAVQQLRKS 86 (1027)
T ss_pred hhheeeeecC-CCCcceeEeecCCCCCCccCCceeEEEeeccCCCCcccccccCCeEEEEcCcchhhhHHHHHHHHHHhh
Confidence 4568999998 678899999999875 235899999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEEeCCCC
Q psy12310 112 DTSISLGIQRNPPG 125 (201)
Q Consensus 112 g~~v~L~v~R~~~~ 125 (201)
|....++|.|..+.
T Consensus 87 gK~A~ItvkRprkv 100 (1027)
T KOG3580|consen 87 GKVAAITVKRPRKV 100 (1027)
T ss_pred ccceeEEeccccee
Confidence 99999999987654
No 18
>KOG3552|consensus
Probab=98.81 E-value=1.2e-08 Score=97.64 Aligned_cols=78 Identities=21% Similarity=0.412 Sum_probs=70.1
Q ss_pred ceEEEEEecCCCCceeEEEEEeecCCCCCcEEEEECCCCccccCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEEE
Q psy12310 38 NTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAAAELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISL 117 (201)
Q Consensus 38 ~~~~V~L~r~~~~~~~Gf~i~gG~~~~~pi~V~~V~~gspA~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~v~L 117 (201)
+.+.|.|+|. ..|||.++-| .|++|..|.+|+|+.+.|++||+|++|||.++++.+++.++.+++.+...|.|
T Consensus 55 ~pr~vq~~r~---~~lGFgfvag----rPviVr~VT~GGps~GKL~PGDQIl~vN~Epv~daprervIdlvRace~sv~l 127 (1298)
T KOG3552|consen 55 EPRQVQLQRN---ASLGFGFVAG----RPVIVRFVTEGGPSIGKLQPGDQILAVNGEPVKDAPRERVIDLVRACESSVNL 127 (1298)
T ss_pred cchhhhhhcc---ccccceeecC----CceEEEEecCCCCccccccCCCeEEEecCcccccccHHHHHHHHHHHhhhcce
Confidence 3567888875 6688877776 68999999999999999999999999999999999999999999999999999
Q ss_pred EEEeC
Q psy12310 118 GIQRN 122 (201)
Q Consensus 118 ~v~R~ 122 (201)
+|.+.
T Consensus 128 tV~qP 132 (1298)
T KOG3552|consen 128 TVCQP 132 (1298)
T ss_pred EEecc
Confidence 99885
No 19
>cd00991 PDZ_archaeal_metalloprotease PDZ domain of archaeal zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.80 E-value=2.3e-08 Score=69.98 Aligned_cols=60 Identities=25% Similarity=0.341 Sum_probs=49.3
Q ss_pred CCCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhC--CCCeEEEEEEeCCCC
Q psy12310 64 DSPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQS--SDTSISLGIQRNPPG 125 (201)
Q Consensus 64 ~~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~--~g~~v~L~v~R~~~~ 125 (201)
..+++|..|.++||| .+||++||+|++|||.++.++. +....+.. .+..+.+++.|+++.
T Consensus 9 ~~Gv~V~~V~~~spa~~aGL~~GDiI~~Ing~~v~~~~--d~~~~l~~~~~g~~v~l~v~r~g~~ 71 (79)
T cd00991 9 VAGVVIVGVIVGSPAENAVLHTGDVIYSINGTPITTLE--DFMEALKPTKPGEVITVTVLPSTTK 71 (79)
T ss_pred CCcEEEEEECCCChHHhcCCCCCCEEEEECCEEcCCHH--HHHHHHhcCCCCCEEEEEEEECCEE
Confidence 457999999999999 8999999999999999999754 44445543 378899999997743
No 20
>cd00989 PDZ_metalloprotease PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.74 E-value=1e-07 Score=65.78 Aligned_cols=58 Identities=33% Similarity=0.462 Sum_probs=47.9
Q ss_pred CCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCC-CCeEEEEEEeCCC
Q psy12310 65 SPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSS-DTSISLGIQRNPP 124 (201)
Q Consensus 65 ~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~-g~~v~L~v~R~~~ 124 (201)
.+++|..|.++||| .+||++||+|++|||.++.++ .+....+... +..+.+++.|++.
T Consensus 12 ~~~~V~~v~~~s~a~~~gl~~GD~I~~ing~~i~~~--~~~~~~l~~~~~~~~~l~v~r~~~ 71 (79)
T cd00989 12 IEPVIGEVVPGSPAAKAGLKAGDRILAINGQKIKSW--EDLVDAVQENPGKPLTLTVERNGE 71 (79)
T ss_pred cCcEEEeECCCCHHHHcCCCCCCEEEEECCEECCCH--HHHHHHHHHCCCceEEEEEEECCE
Confidence 46899999999999 899999999999999999875 4444455444 6789999998764
No 21
>KOG1892|consensus
Probab=98.71 E-value=1.5e-07 Score=90.66 Aligned_cols=86 Identities=17% Similarity=0.279 Sum_probs=74.2
Q ss_pred CceEEEEEecCCCCceeEEEEEeecCC---CCCcEEEEECCCCcc--ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCC
Q psy12310 37 QNTFTVVIKRPNRHHSWGLRIAGGCDL---DSPIVITKVYPGTPA--AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSS 111 (201)
Q Consensus 37 ~~~~~V~L~r~~~~~~~Gf~i~gG~~~---~~pi~V~~V~~gspA--~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~ 111 (201)
.+..+|+|.|. .+.|++|+..++- ..+|||.+|.+|++| ++.|..||.+|+|||..+-+++.+.|..+|-+.
T Consensus 932 pei~~vtL~Kn---nGmGLSIVAAkGaGq~klGIYvKsVV~GgaAd~DGRL~aGDQLLsVdG~SLiGisQErAA~lmtrt 1008 (1629)
T KOG1892|consen 932 PEIITVTLKKN---NGMGLSIVAAKGAGQRKLGIYVKSVVEGGAADHDGRLEAGDQLLSVDGHSLIGISQERAARLMTRT 1008 (1629)
T ss_pred CceEEEEEecc---CCceEEEEeeccCCccccceEEEEeccCCccccccccccCceeeeecCcccccccHHHHHHHHhcc
Confidence 36889999975 5688888664432 569999999999999 688999999999999999999999999999999
Q ss_pred CCeEEEEEEeCCCC
Q psy12310 112 DTSISLGIQRNPPG 125 (201)
Q Consensus 112 g~~v~L~v~R~~~~ 125 (201)
|..|.|.|...+..
T Consensus 1009 g~vV~leVaKqgAi 1022 (1629)
T KOG1892|consen 1009 GNVVHLEVAKQGAI 1022 (1629)
T ss_pred CCeEEEehhhhhhH
Confidence 99999999766543
No 22
>cd00990 PDZ_glycyl_aminopeptidase PDZ domain associated with archaeal and bacterial M61 glycyl-aminopeptidases. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand is presumed to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.70 E-value=1e-07 Score=66.08 Aligned_cols=67 Identities=19% Similarity=0.256 Sum_probs=50.6
Q ss_pred eEEEEEeecCCCCCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEEEEEEeCCCC
Q psy12310 53 WGLRIAGGCDLDSPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPPG 125 (201)
Q Consensus 53 ~Gf~i~gG~~~~~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~v~L~v~R~~~~ 125 (201)
+|+.+... ..+++|..|.++||| .+||++||+|++|||.++.+ ..+.+..+ ..+..+.+++.|++..
T Consensus 3 ~G~~~~~~---~~~~~V~~V~~~s~a~~aGl~~GD~I~~Ing~~v~~--~~~~l~~~-~~~~~v~l~v~r~g~~ 70 (80)
T cd00990 3 LGLTLDKE---EGLGKVTFVRDDSPADKAGLVAGDELVAVNGWRVDA--LQDRLKEY-QAGDPVELTVFRDDRL 70 (80)
T ss_pred ccEEEEcc---CCcEEEEEECCCChHHHhCCCCCCEEEEECCEEhHH--HHHHHHhc-CCCCEEEEEEEECCEE
Confidence 56666321 346899999999999 89999999999999999987 23333222 3567899999997643
No 23
>cd00987 PDZ_serine_protease PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.63 E-value=1.7e-07 Score=66.14 Aligned_cols=58 Identities=22% Similarity=0.412 Sum_probs=47.7
Q ss_pred CCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhC--CCCeEEEEEEeCCC
Q psy12310 65 SPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQS--SDTSISLGIQRNPP 124 (201)
Q Consensus 65 ~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~--~g~~v~L~v~R~~~ 124 (201)
.+++|..|.++||| .+||++||+|++|||.++.++.... ..+.. .+..+.+.+.|++.
T Consensus 24 ~g~~V~~v~~~s~a~~~gl~~GD~I~~Ing~~i~~~~~~~--~~l~~~~~~~~i~l~v~r~g~ 84 (90)
T cd00987 24 KGVLVASVDPGSPAAKAGLKPGDVILAVNGKPVKSVADLR--RALAELKPGDKVTLTVLRGGK 84 (90)
T ss_pred CEEEEEEECCCCHHHHcCCCcCCEEEEECCEECCCHHHHH--HHHHhcCCCCEEEEEEEECCE
Confidence 47899999999999 8999999999999999998765433 33433 37889999998764
No 24
>KOG3542|consensus
Probab=98.59 E-value=8.4e-08 Score=89.80 Aligned_cols=83 Identities=24% Similarity=0.493 Sum_probs=73.9
Q ss_pred ceEEEEEecCCCCceeEEEEEeecCCCCCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEE
Q psy12310 38 NTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSIS 116 (201)
Q Consensus 38 ~~~~V~L~r~~~~~~~Gf~i~gG~~~~~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~v~ 116 (201)
..+.|.|.|.....++-|++.||.+.+.+|||..|.||+.| ..||+.||.|+.|||++.++++...|..++++. ..+.
T Consensus 535 K~RqviLtk~sre~pl~f~L~GGsEkGfgifV~~V~pgskAa~~GlKRgDqilEVNgQnfenis~~KA~eiLrnn-thLt 613 (1283)
T KOG3542|consen 535 KPRQVILTKASREDPLMFRLVGGSEKGFGIFVAEVFPGSKAAREGLKRGDQILEVNGQNFENISAKKAEEILRNN-THLT 613 (1283)
T ss_pred cceeEEEecccccCCceeEeccCccccceeEEeeecCCchHHHhhhhhhhhhhhccccchhhhhHHHHHHHhcCC-ceEE
Confidence 45568888866678999999999999999999999999999 999999999999999999999999999999876 6677
Q ss_pred EEEEe
Q psy12310 117 LGIQR 121 (201)
Q Consensus 117 L~v~R 121 (201)
|++.-
T Consensus 614 ltvKt 618 (1283)
T KOG3542|consen 614 LTVKT 618 (1283)
T ss_pred EEEec
Confidence 77653
No 25
>cd00986 PDZ_LON_protease PDZ domain of ATP-dependent LON serine proteases. Most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this bacterial subfamily of protease-associated PDZ domains a C-terminal beta-strand is thought to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.56 E-value=3.4e-07 Score=63.68 Aligned_cols=59 Identities=24% Similarity=0.426 Sum_probs=46.8
Q ss_pred CCcEEEEECCCCccccCCCCCCEEEEECCEECCCCCHHHHHHHHh--CCCCeEEEEEEeCCCC
Q psy12310 65 SPIVITKVYPGTPAAAELKRGDIIRKIGDYDSRDLRHKDATNFFQ--SSDTSISLGIQRNPPG 125 (201)
Q Consensus 65 ~pi~V~~V~~gspA~agL~~GD~Il~Ing~~v~~~~~~~av~~ik--~~g~~v~L~v~R~~~~ 125 (201)
.+++|..|.++|||..+|++||+|++|||.++.++. +...++. ..+..+.+++.|++..
T Consensus 8 ~Gv~V~~V~~~s~A~~gL~~GD~I~~Ing~~v~~~~--~~~~~l~~~~~~~~v~l~v~r~g~~ 68 (79)
T cd00986 8 HGVYVTSVVEGMPAAGKLKAGDHIIAVDGKPFKEAE--ELIDYIQSKKEGDTVKLKVKREEKE 68 (79)
T ss_pred cCEEEEEECCCCchhhCCCCCCEEEEECCEECCCHH--HHHHHHHhCCCCCEEEEEEEECCEE
Confidence 368999999999993379999999999999998653 3444554 3477899999997754
No 26
>KOG3580|consensus
Probab=98.55 E-value=1.9e-07 Score=86.38 Aligned_cols=82 Identities=23% Similarity=0.410 Sum_probs=72.7
Q ss_pred ceEEEEEecCCCCceeEEEEEeecCCCCCcEEEEECCCCcc--ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeE
Q psy12310 38 NTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA--AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSI 115 (201)
Q Consensus 38 ~~~~V~L~r~~~~~~~Gf~i~gG~~~~~pi~V~~V~~gspA--~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~v 115 (201)
..+.|.|.|.+.+..||+++- ..|||..+...+.| .++|+.||+||+|||...++|+..++..+|.++..++
T Consensus 198 ~p~kv~LvKsR~nEEyGlrLg------SqIFvKeit~~gLAardgnlqEGDiiLkINGtvteNmSLtDar~LIEkS~GKL 271 (1027)
T KOG3580|consen 198 GPIKVLLVKSRANEEYGLRLG------SQIFVKEITRTGLAARDGNLQEGDIILKINGTVTENMSLTDARKLIEKSRGKL 271 (1027)
T ss_pred CcceEEEEeeccchhhccccc------chhhhhhhcccchhhccCCcccccEEEEECcEeeccccchhHHHHHHhccCce
Confidence 456788887777888999873 46999999999987 6899999999999999999999999999999998999
Q ss_pred EEEEEeCCCC
Q psy12310 116 SLGIQRNPPG 125 (201)
Q Consensus 116 ~L~v~R~~~~ 125 (201)
.|+|+|+...
T Consensus 272 ~lvVlRD~~q 281 (1027)
T KOG3580|consen 272 QLVVLRDSQQ 281 (1027)
T ss_pred EEEEEecCCc
Confidence 9999998754
No 27
>KOG3651|consensus
Probab=98.53 E-value=4.1e-07 Score=78.30 Aligned_cols=81 Identities=20% Similarity=0.335 Sum_probs=71.7
Q ss_pred EEEEEecCCCCceeEEEEEeecCCCCCcEEEEECCCCcc--ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEEE
Q psy12310 40 FTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA--AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISL 117 (201)
Q Consensus 40 ~~V~L~r~~~~~~~Gf~i~gG~~~~~pi~V~~V~~gspA--~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~v~L 117 (201)
-+|+|.++ ...-.|++|-||..++.-++|..|..++|| ++.++.||.|++|||..+.+.+-.++..+|.-+.+.|.+
T Consensus 6 ~~v~ltKD-~~nliGISIGGGapyCPClYiVQvFD~tPAa~dG~i~~GDEi~avNg~svKGktKveVAkmIQ~~~~eV~I 84 (429)
T KOG3651|consen 6 ETVELTKD-EKNLIGISIGGGAPYCPCLYIVQVFDKTPAAKDGRIRCGDEIVAVNGISVKGKTKVEVAKMIQVSLNEVKI 84 (429)
T ss_pred CcEEEeec-cccceeEEecCCCCcCCeEEEEEeccCCchhccCccccCCeeEEecceeecCccHHHHHHHHHHhccceEE
Confidence 36888887 456689999999998888999999999998 688999999999999999999999999999988888888
Q ss_pred EEEe
Q psy12310 118 GIQR 121 (201)
Q Consensus 118 ~v~R 121 (201)
.+-.
T Consensus 85 hyNK 88 (429)
T KOG3651|consen 85 HYNK 88 (429)
T ss_pred Eehh
Confidence 7654
No 28
>KOG3606|consensus
Probab=98.51 E-value=3.1e-07 Score=77.88 Aligned_cols=86 Identities=14% Similarity=0.245 Sum_probs=72.7
Q ss_pred EEEEEecCCCCceeEEEEEeec---------CCCCCcEEEEECCCCcc-c-cCCCCCCEEEEECCEECCCCCHHHHHHHH
Q psy12310 40 FTVVIKRPNRHHSWGLRIAGGC---------DLDSPIVITKVYPGTPA-A-AELKRGDIIRKIGDYDSRDLRHKDATNFF 108 (201)
Q Consensus 40 ~~V~L~r~~~~~~~Gf~i~gG~---------~~~~pi~V~~V~~gspA-~-agL~~GD~Il~Ing~~v~~~~~~~av~~i 108 (201)
+.|+|.|.+...|+||.|.-|. +.-.+|||+++.||+.| . +-|...|.|+.|||+.+.+.+.+++-.+|
T Consensus 160 RRVRL~khG~ekPLGFYIRDG~SVRVtp~GlekvpGIFISRlVpGGLAeSTGLLaVnDEVlEVNGIEVaGKTLDQVTDMM 239 (358)
T KOG3606|consen 160 RRVRLHKHGSEKPLGFYIRDGTSVRVTPHGLEKVPGIFISRLVPGGLAESTGLLAVNDEVLEVNGIEVAGKTLDQVTDMM 239 (358)
T ss_pred hheehhhcCCCCCceEEEecCceEEeccccccccCceEEEeecCCccccccceeeecceeEEEcCEEeccccHHHHHHHH
Confidence 4688888877899999998875 33458999999999999 4 45788999999999999999999999988
Q ss_pred hCCCCeEEEEEEeCCCC
Q psy12310 109 QSSDTSISLGIQRNPPG 125 (201)
Q Consensus 109 k~~g~~v~L~v~R~~~~ 125 (201)
-.....+.++|+..+++
T Consensus 240 vANshNLIiTVkPANQR 256 (358)
T KOG3606|consen 240 VANSHNLIITVKPANQR 256 (358)
T ss_pred hhcccceEEEecccccc
Confidence 77777888888765554
No 29
>KOG3571|consensus
Probab=98.49 E-value=8.3e-07 Score=80.74 Aligned_cols=88 Identities=18% Similarity=0.325 Sum_probs=72.2
Q ss_pred CceEEEEEecCCCCceeEEEEEeecCC--CCCcEEEEECCCCc-c-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCC-
Q psy12310 37 QNTFTVVIKRPNRHHSWGLRIAGGCDL--DSPIVITKVYPGTP-A-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSS- 111 (201)
Q Consensus 37 ~~~~~V~L~r~~~~~~~Gf~i~gG~~~--~~pi~V~~V~~gsp-A-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~- 111 (201)
...++|+|.=. ...-||++|+|.... +.+|||..|.+|++ | ++.|.+||.||+||.+++++++.++||..|+.+
T Consensus 248 lnIITV~LnMe-~vnfLGiSivgqsn~rgDggIYVgsImkgGAVA~DGRIe~GDMiLQVNevsFENmSNd~AVrvLREaV 326 (626)
T KOG3571|consen 248 LNIITVTLNME-TVNFLGISIVGQSNARGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNEVSFENMSNDQAVRVLREAV 326 (626)
T ss_pred eeEEEEEeccc-ccccceeEeecccCcCCCCceEEeeeccCceeeccCccCccceEEEeeecchhhcCchHHHHHHHHHh
Confidence 36778888654 345599999995422 56899999999998 5 799999999999999999999999999999755
Q ss_pred --CCeEEEEEEeCCCC
Q psy12310 112 --DTSISLGIQRNPPG 125 (201)
Q Consensus 112 --g~~v~L~v~R~~~~ 125 (201)
..++.|+|-..-+.
T Consensus 327 ~~~gPi~ltvAk~~DP 342 (626)
T KOG3571|consen 327 SRPGPIKLTVAKCWDP 342 (626)
T ss_pred ccCCCeEEEEeeccCC
Confidence 45789998876654
No 30
>TIGR01713 typeII_sec_gspC general secretion pathway protein C. This model represents GspC, protein C of the main terminal branch of the general secretion pathway, also called type II secretion. This system transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.
Probab=98.35 E-value=1.9e-06 Score=73.54 Aligned_cols=71 Identities=18% Similarity=0.151 Sum_probs=53.3
Q ss_pred eEEEEEeecCCCCCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhC--CCCeEEEEEEeCCCC
Q psy12310 53 WGLRIAGGCDLDSPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQS--SDTSISLGIQRNPPG 125 (201)
Q Consensus 53 ~Gf~i~gG~~~~~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~--~g~~v~L~v~R~~~~ 125 (201)
+|+...--.+...++.|..+.+++|| ++||++||+|++|||+++.+.... ..++.. .+..+.|+|+|++..
T Consensus 179 lgi~p~~~~g~~~G~~v~~v~~~s~a~~aGLr~GDvIv~ING~~i~~~~~~--~~~l~~~~~~~~v~l~V~R~G~~ 252 (259)
T TIGR01713 179 IRLSPVMKNDKLEGYRLNPGKDPSLFYKSGLQDGDIAVALNGLDLRDPEQA--FQALQMLREETNLTLTVERDGQR 252 (259)
T ss_pred EeEEEEEeCCceeEEEEEecCCCCHHHHcCCCCCCEEEEECCEEcCCHHHH--HHHHHhcCCCCeEEEEEEECCEE
Confidence 45554322122358999999999999 999999999999999999986443 334433 467999999998854
No 31
>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.
Probab=98.29 E-value=2.1e-06 Score=77.82 Aligned_cols=61 Identities=25% Similarity=0.359 Sum_probs=49.8
Q ss_pred CCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEEEEEEeCCCC
Q psy12310 65 SPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPPG 125 (201)
Q Consensus 65 ~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~v~L~v~R~~~~ 125 (201)
.+++|..|.++||| ++||++||+|++|||.++.++.+....-.....+..+.|++.|++..
T Consensus 257 ~Gv~V~~V~~~spA~~aGL~~GDvI~~Vng~~i~~~~~~~~~l~~~~~g~~v~l~v~R~g~~ 318 (428)
T TIGR02037 257 RGALVAQVLPGSPAEKAGLKAGDVILSVNGKPISSFADLRRAIGTLKPGKKVTLGILRKGKE 318 (428)
T ss_pred CceEEEEccCCCChHHcCCCCCCEEEEECCEEcCCHHHHHHHHHhcCCCCEEEEEEEECCEE
Confidence 57899999999999 89999999999999999998655433222234588999999998765
No 32
>PRK10779 zinc metallopeptidase RseP; Provisional
Probab=98.25 E-value=1.7e-06 Score=79.13 Aligned_cols=62 Identities=13% Similarity=0.197 Sum_probs=50.8
Q ss_pred CCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEEEEEEeCCCCC
Q psy12310 65 SPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPPGE 126 (201)
Q Consensus 65 ~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~v~L~v~R~~~~~ 126 (201)
.+.+|..|.++||| +|||++||+|++|||+++.++......-..+..+.++.+++.|+++..
T Consensus 126 ~~~lV~~V~~~SpA~kAGLk~GDvI~~vnG~~V~~~~~l~~~v~~~~~g~~v~v~v~R~gk~~ 188 (449)
T PRK10779 126 VRPVVGEIAPNSIAAQAQIAPGTELKAVDGIETPDWDAVRLALVSKIGDESTTITVAPFGSDQ 188 (449)
T ss_pred CCccccccCCCCHHHHcCCCCCCEEEEECCEEcCCHHHHHHHHHhhccCCceEEEEEeCCccc
Confidence 34579999999999 999999999999999999988665544333444788999999988753
No 33
>PRK10139 serine endoprotease; Provisional
Probab=98.23 E-value=3.7e-06 Score=77.06 Aligned_cols=60 Identities=22% Similarity=0.344 Sum_probs=49.8
Q ss_pred CCCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHh--CCCCeEEEEEEeCCCC
Q psy12310 64 DSPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQ--SSDTSISLGIQRNPPG 125 (201)
Q Consensus 64 ~~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik--~~g~~v~L~v~R~~~~ 125 (201)
..+++|..|.++||| ++||++||+|++|||+++.++... ...+. ..+..+.++|.|+++.
T Consensus 289 ~~Gv~V~~V~~~SpA~~AGL~~GDvIl~InG~~V~s~~dl--~~~l~~~~~g~~v~l~V~R~G~~ 351 (455)
T PRK10139 289 QRGAFVSEVLPNSGSAKAGVKAGDIITSLNGKPLNSFAEL--RSRIATTEPGTKVKLGLLRNGKP 351 (455)
T ss_pred CCceEEEEECCCChHHHCCCCCCCEEEEECCEECCCHHHH--HHHHHhcCCCCEEEEEEEECCEE
Confidence 357899999999999 999999999999999999986544 33343 4578999999998865
No 34
>PRK10779 zinc metallopeptidase RseP; Provisional
Probab=98.16 E-value=1.6e-05 Score=72.71 Aligned_cols=58 Identities=22% Similarity=0.333 Sum_probs=48.3
Q ss_pred CcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhC-CCCeEEEEEEeCCCC
Q psy12310 66 PIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQS-SDTSISLGIQRNPPG 125 (201)
Q Consensus 66 pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~-~g~~v~L~v~R~~~~ 125 (201)
+++|..|.++||| ++||++||+|++|||.++.++.. ....++. .+..+.+++.|+++.
T Consensus 222 ~~vV~~V~~~SpA~~AGL~~GDvIl~Ing~~V~s~~d--l~~~l~~~~~~~v~l~v~R~g~~ 281 (449)
T PRK10779 222 EPVLAEVQPNSAASKAGLQAGDRIVKVDGQPLTQWQT--FVTLVRDNPGKPLALEIERQGSP 281 (449)
T ss_pred CcEEEeeCCCCHHHHcCCCCCCEEEEECCEEcCCHHH--HHHHHHhCCCCEEEEEEEECCEE
Confidence 5799999999999 99999999999999999987544 3334443 477899999998864
No 35
>PRK10942 serine endoprotease; Provisional
Probab=98.16 E-value=5.9e-06 Score=76.10 Aligned_cols=61 Identities=20% Similarity=0.294 Sum_probs=49.7
Q ss_pred CCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEEEEEEeCCCC
Q psy12310 65 SPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPPG 125 (201)
Q Consensus 65 ~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~v~L~v~R~~~~ 125 (201)
.+++|..|.++||| ++||++||+|++|||..+.++......-.....+..+.|+|.|+++.
T Consensus 311 ~GvlV~~V~~~SpA~~AGL~~GDvIl~InG~~V~s~~dl~~~l~~~~~g~~v~l~v~R~G~~ 372 (473)
T PRK10942 311 RGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISSFAALRAQVGTMPVGSKLTLGLLRDGKP 372 (473)
T ss_pred CceEEEEECCCChHHHcCCCCCCEEEEECCEECCCHHHHHHHHHhcCCCCEEEEEEEECCeE
Confidence 47899999999999 89999999999999999998755433211223478999999998865
No 36
>TIGR02038 protease_degS periplasmic serine pepetdase DegS. This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E).
Probab=98.16 E-value=4.7e-06 Score=73.95 Aligned_cols=59 Identities=24% Similarity=0.247 Sum_probs=48.9
Q ss_pred CCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHh--CCCCeEEEEEEeCCCC
Q psy12310 65 SPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQ--SSDTSISLGIQRNPPG 125 (201)
Q Consensus 65 ~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik--~~g~~v~L~v~R~~~~ 125 (201)
.+++|..|.++||| ++||++||+|++|||+++.++... ...+. ..+..+.|++.|+++.
T Consensus 278 ~Gv~V~~V~~~spA~~aGL~~GDvI~~Ing~~V~s~~dl--~~~l~~~~~g~~v~l~v~R~g~~ 339 (351)
T TIGR02038 278 RGIVITGVDPNGPAARAGILVRDVILKYDGKDVIGAEEL--MDRIAETRPGSKVMVTVLRQGKQ 339 (351)
T ss_pred ccceEeecCCCChHHHCCCCCCCEEEEECCEEcCCHHHH--HHHHHhcCCCCEEEEEEEECCEE
Confidence 47999999999999 899999999999999999886443 33343 4588999999998754
No 37
>PRK10898 serine endoprotease; Provisional
Probab=98.15 E-value=6.4e-06 Score=73.16 Aligned_cols=61 Identities=18% Similarity=0.209 Sum_probs=48.5
Q ss_pred CCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEEEEEEeCCCC
Q psy12310 65 SPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPPG 125 (201)
Q Consensus 65 ~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~v~L~v~R~~~~ 125 (201)
.+++|..|.++||| .+||++||+|++|||.++.++......-.-...+..+.|++.|+++.
T Consensus 279 ~Gv~V~~V~~~spA~~aGL~~GDvI~~Ing~~V~s~~~l~~~l~~~~~g~~v~l~v~R~g~~ 340 (353)
T PRK10898 279 QGIVVNEVSPDGPAAKAGIQVNDLIISVNNKPAISALETMDQVAEIRPGSVIPVVVMRDDKQ 340 (353)
T ss_pred CeEEEEEECCCChHHHcCCCCCCEEEEECCEEcCCHHHHHHHHHhcCCCCEEEEEEEECCEE
Confidence 57999999999999 89999999999999999987644322111124578999999998754
No 38
>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.
Probab=98.11 E-value=7.6e-06 Score=74.24 Aligned_cols=59 Identities=25% Similarity=0.393 Sum_probs=49.7
Q ss_pred CCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhC--CCCeEEEEEEeCCCC
Q psy12310 65 SPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQS--SDTSISLGIQRNPPG 125 (201)
Q Consensus 65 ~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~--~g~~v~L~v~R~~~~ 125 (201)
.+++|..|.++||| .+||++||+|++|||+++.++.+ ..++++. .+..+.|+|.|++..
T Consensus 362 ~Gv~V~~V~~~SpA~~aGL~~GDvI~~Ing~~V~s~~d--~~~~l~~~~~g~~v~l~v~R~g~~ 423 (428)
T TIGR02037 362 KGVVVTKVVSGSPAARAGLQPGDVILSVNQQPVSSVAE--LRKVLDRAKKGGRVALLILRGGAT 423 (428)
T ss_pred CceEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCHHH--HHHHHHhcCCCCEEEEEEEECCEE
Confidence 57999999999999 89999999999999999987644 4455553 478999999998753
No 39
>TIGR00054 RIP metalloprotease RseP. A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.
Probab=98.10 E-value=8e-06 Score=74.13 Aligned_cols=59 Identities=29% Similarity=0.420 Sum_probs=49.2
Q ss_pred CCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhC-CCCeEEEEEEeCCCC
Q psy12310 65 SPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQS-SDTSISLGIQRNPPG 125 (201)
Q Consensus 65 ~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~-~g~~v~L~v~R~~~~ 125 (201)
.+++|..|.++||| ++||++||+|++|||+++.++. +....++. .+..+.+++.|++..
T Consensus 203 ~g~vV~~V~~~SpA~~aGL~~GD~Iv~Vng~~V~s~~--dl~~~l~~~~~~~v~l~v~R~g~~ 263 (420)
T TIGR00054 203 IEPVLSDVTPNSPAEKAGLKEGDYIQSINGEKLRSWT--DFVSAVKENPGKSMDIKVERNGET 263 (420)
T ss_pred cCcEEEEECCCCHHHHcCCCCCCEEEEECCEECCCHH--HHHHHHHhCCCCceEEEEEECCEE
Confidence 46899999999999 8999999999999999998753 44445544 477899999998865
No 40
>PRK10139 serine endoprotease; Provisional
Probab=98.05 E-value=1.1e-05 Score=74.04 Aligned_cols=59 Identities=24% Similarity=0.352 Sum_probs=49.2
Q ss_pred CCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEEEEEEeCCCC
Q psy12310 65 SPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPPG 125 (201)
Q Consensus 65 ~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~v~L~v~R~~~~ 125 (201)
.+++|..|.++||| ++||++||+|++|||.++.++.. ....++.....+.|+|+|++..
T Consensus 390 ~Gv~V~~V~~~spA~~aGL~~GD~I~~Ing~~v~~~~~--~~~~l~~~~~~v~l~v~R~g~~ 449 (455)
T PRK10139 390 KGIKIDEVVKGSPAAQAGLQKDDVIIGVNRDRVNSIAE--MRKVLAAKPAIIALQIVRGNES 449 (455)
T ss_pred CceEEEEeCCCChHHHcCCCCCCEEEEECCEEcCCHHH--HHHHHHhCCCeEEEEEEECCEE
Confidence 47899999999999 89999999999999999987644 4455555557899999998753
No 41
>PRK10942 serine endoprotease; Provisional
Probab=98.01 E-value=1.6e-05 Score=73.29 Aligned_cols=59 Identities=29% Similarity=0.524 Sum_probs=49.8
Q ss_pred CCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEEEEEEeCCCC
Q psy12310 65 SPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPPG 125 (201)
Q Consensus 65 ~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~v~L~v~R~~~~ 125 (201)
.+++|..|.++|+| .+||++||+|++|||+++.++ .+....++..+..+.|+|.|++..
T Consensus 408 ~gvvV~~V~~~S~A~~aGL~~GDvIv~VNg~~V~s~--~dl~~~l~~~~~~v~l~V~R~g~~ 467 (473)
T PRK10942 408 KGVVVDNVKPGTPAAQIGLKKGDVIIGANQQPVKNI--AELRKILDSKPSVLALNIQRGDSS 467 (473)
T ss_pred CCeEEEEeCCCChHHHcCCCCCCEEEEECCEEcCCH--HHHHHHHHhCCCeEEEEEEECCEE
Confidence 47999999999999 899999999999999999986 444555655567899999998753
No 42
>KOG3605|consensus
Probab=97.71 E-value=4.5e-05 Score=71.49 Aligned_cols=74 Identities=20% Similarity=0.328 Sum_probs=64.2
Q ss_pred CCCceEEEEEecCCCCceeEEEEEeecCCCCCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCC
Q psy12310 35 PHQNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDT 113 (201)
Q Consensus 35 ~~~~~~~V~L~r~~~~~~~Gf~i~gG~~~~~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~ 113 (201)
+..-.++|.+.|++....|||+++-| +|+++..|+.| .+|+++|.+|+.|||+.|-...|+..+.+|..+=.
T Consensus 733 ~cpPV~~V~I~RPd~kyQLGFSVQNG-------iICSLlRGGIAERGGVRVGHRIIEINgQSVVA~pHekIV~lLs~aVG 805 (829)
T KOG3605|consen 733 SCPPVTTVLIRRPDLRYQLGFSVQNG-------IICSLLRGGIAERGGVRVGHRIIEINGQSVVATPHEKIVQLLSNAVG 805 (829)
T ss_pred cCCCceEEEeecccchhhccceeeCc-------EeehhhcccchhccCceeeeeEEEECCceEEeccHHHHHHHHHHhhh
Confidence 44457789999988778899999865 78889999999 99999999999999999999999999999987733
Q ss_pred eE
Q psy12310 114 SI 115 (201)
Q Consensus 114 ~v 115 (201)
.+
T Consensus 806 EI 807 (829)
T KOG3605|consen 806 EI 807 (829)
T ss_pred hh
Confidence 33
No 43
>TIGR00054 RIP metalloprotease RseP. A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.
Probab=97.68 E-value=7e-05 Score=68.00 Aligned_cols=59 Identities=14% Similarity=0.066 Sum_probs=46.8
Q ss_pred CCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEEEEEEeCCCC
Q psy12310 65 SPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPPG 125 (201)
Q Consensus 65 ~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~v~L~v~R~~~~ 125 (201)
.+.+|..|.++||| +|||++||+|++|||.++.+.......-. ... ..+.+++.|+++.
T Consensus 128 ~g~~V~~V~~~SpA~~AGL~~GDvI~~vng~~v~~~~dl~~~ia-~~~-~~v~~~I~r~g~~ 187 (420)
T TIGR00054 128 VGPVIELLDKNSIALEAGIEPGDEILSVNGNKIPGFKDVRQQIA-DIA-GEPMVEILAEREN 187 (420)
T ss_pred CCceeeccCCCCHHHHcCCCCCCEEEEECCEEcCCHHHHHHHHH-hhc-ccceEEEEEecCc
Confidence 57889999999999 99999999999999999998754433222 222 6788888887654
No 44
>TIGR02860 spore_IV_B stage IV sporulation protein B. SpoIVB, the stage IV sporulation protein B of endospore-forming bacteria such as Bacillus subtilis, is a serine proteinase, expressed in the spore (rather than mother cell) compartment, that participates in a proteolytic activation cascade for Sigma-K. It appears to be universal among endospore-forming bacteria and occurs nowhere else.
Probab=97.62 E-value=0.00027 Score=63.69 Aligned_cols=70 Identities=19% Similarity=0.316 Sum_probs=51.2
Q ss_pred CCceeEEEEEeecCCCCCcEEEEEC--------CCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCC-CCeEEEE
Q psy12310 49 RHHSWGLRIAGGCDLDSPIVITKVY--------PGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSS-DTSISLG 118 (201)
Q Consensus 49 ~~~~~Gf~i~gG~~~~~pi~V~~V~--------~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~-g~~v~L~ 118 (201)
++.+.|+.+.. .+++|.... .++|| .+||++||+|++|||.++.++.. ....++.. +..+.|+
T Consensus 94 gG~~iGI~l~t-----~GVlVvg~~~v~~~~g~~~SPAa~AGLq~GDiIvsING~~V~s~~D--L~~iL~~~~g~~V~Lt 166 (402)
T TIGR02860 94 GGQSIGVKLNT-----KGVLVVGFSDIETEKGKIHSPGEEAGIQIGDRILKINGEKIKNMDD--LANLINKAGGEKLTLT 166 (402)
T ss_pred CCEEEEEEEec-----CEEEEEEEEcccccCCCCCCHHHHcCCCCCCEEEEECCEECCCHHH--HHHHHHhCCCCeEEEE
Confidence 45667777642 356665442 26899 89999999999999999987643 44555544 7889999
Q ss_pred EEeCCCC
Q psy12310 119 IQRNPPG 125 (201)
Q Consensus 119 v~R~~~~ 125 (201)
+.|++..
T Consensus 167 V~R~Ge~ 173 (402)
T TIGR02860 167 IERGGKI 173 (402)
T ss_pred EEECCEE
Confidence 9998754
No 45
>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase. Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.
Probab=97.55 E-value=9.2e-05 Score=67.22 Aligned_cols=52 Identities=27% Similarity=0.394 Sum_probs=40.4
Q ss_pred EEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEEEEEE-eCCC
Q psy12310 69 ITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQ-RNPP 124 (201)
Q Consensus 69 V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~v~L~v~-R~~~ 124 (201)
|..|.|+|+| ++||++||+|++|||..+.++.. ....+ .+..+.++|. |++.
T Consensus 2 I~~V~pgSpAe~AGLe~GD~IlsING~~V~Dw~D--~~~~l--~~e~l~L~V~~rdGe 55 (433)
T TIGR03279 2 ISAVLPGSIAEELGFEPGDALVSINGVAPRDLID--YQFLC--ADEELELEVLDANGE 55 (433)
T ss_pred cCCcCCCCHHHHcCCCCCCEEEEECCEECCCHHH--HHHHh--cCCcEEEEEEcCCCe
Confidence 6779999999 99999999999999999987644 22233 2456888886 5553
No 46
>KOG0606|consensus
Probab=97.51 E-value=0.00023 Score=70.34 Aligned_cols=79 Identities=22% Similarity=0.392 Sum_probs=64.4
Q ss_pred EEEEecCCCCceeEEEEE------eecCC-CCCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCCC
Q psy12310 41 TVVIKRPNRHHSWGLRIA------GGCDL-DSPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSSD 112 (201)
Q Consensus 41 ~V~L~r~~~~~~~Gf~i~------gG~~~-~~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~g 112 (201)
.+.+.+.+ ..|||.+. |++++ -.--.|..|.+|||| .+||++||.|+.|||..+.++.|.+.++++-..|
T Consensus 629 pI~i~~~~--~~yGft~~airVy~Gd~d~ytvhh~v~sv~egsPA~~agls~~DlIthvnge~v~gl~H~ev~~Lll~~g 706 (1205)
T KOG0606|consen 629 PITIHFSG--KKYGFTLRAIRVYMGDKDVYTVHHSVGSVEEGSPAFEAGLSAGDLITHVNGEPVHGLVHTEVMELLLKSG 706 (1205)
T ss_pred ceeeeccc--cccCceeeeEEEecCCcccceeeeeeeeecCCCCccccCCCccceeEeccCcccchhhHHHHHHHHHhcC
Confidence 36777743 67998774 44442 223588999999999 9999999999999999999999999999999888
Q ss_pred CeEEEEEEe
Q psy12310 113 TSISLGIQR 121 (201)
Q Consensus 113 ~~v~L~v~R 121 (201)
+.|.+.+.-
T Consensus 707 n~v~~~ttp 715 (1205)
T KOG0606|consen 707 NKVTLRTTP 715 (1205)
T ss_pred CeeEEEeec
Confidence 888877654
No 47
>KOG3129|consensus
Probab=97.49 E-value=0.00025 Score=58.31 Aligned_cols=59 Identities=29% Similarity=0.391 Sum_probs=45.8
Q ss_pred cEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHH--hCCCCeEEEEEEeCCCC
Q psy12310 67 IVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFF--QSSDTSISLGIQRNPPG 125 (201)
Q Consensus 67 i~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~i--k~~g~~v~L~v~R~~~~ 125 (201)
++|..|.|+||| .|||+.||.|+++..+.-.+....+-+..+ ...+..+.+++.|.+..
T Consensus 141 a~V~sV~~~SPA~~aGl~~gD~il~fGnV~sgn~~~lq~i~~~v~~~e~~~v~v~v~R~g~~ 202 (231)
T KOG3129|consen 141 AVVDSVVPGSPADEAGLCVGDEILKFGNVHSGNFLPLQNIAAVVQSNEDQIVSVTVIREGQK 202 (231)
T ss_pred EEEeecCCCChhhhhCcccCceEEEecccccccchhHHHHHHHHHhccCcceeEEEecCCCE
Confidence 689999999999 999999999999988777665423322233 33388999999998865
No 48
>PF14685 Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A.
Probab=97.47 E-value=0.00076 Score=48.42 Aligned_cols=58 Identities=21% Similarity=0.368 Sum_probs=36.6
Q ss_pred CcEEEEECCC--------Ccc-cc--CCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEEEEEEeCCC
Q psy12310 66 PIVITKVYPG--------TPA-AA--ELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPP 124 (201)
Q Consensus 66 pi~V~~V~~g--------spA-~a--gL~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~v~L~v~R~~~ 124 (201)
...|.+|++| ||. +. .+++||+|++|||+++..-..-.. -+...++.+|.|+|.+.+.
T Consensus 13 ~y~I~~I~~gd~~~~~~~sPL~~pGv~v~~GD~I~aInG~~v~~~~~~~~-lL~~~agk~V~Ltv~~~~~ 81 (88)
T PF14685_consen 13 GYRIARIYPGDPWNPNARSPLAQPGVDVREGDYILAINGQPVTADANPYR-LLEGKAGKQVLLTVNRKPG 81 (88)
T ss_dssp EEEEEEE-BS-TTSSS-B-GGGGGS----TT-EEEEETTEE-BTTB-HHH-HHHTTTTSEEEEEEE-STT
T ss_pred EEEEEEEeCCCCCCccccCCccCCCCCCCCCCEEEEECCEECCCCCCHHH-HhcccCCCEEEEEEecCCC
Confidence 5778888887 454 33 567999999999999986544332 2445669999999998764
No 49
>PF04495 GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro: IPR007583 GRASP55 (Golgi reassembly stacking protein of 55 kDa) and GRASP65 (a 65 kDa) protein are highly homologous. GRASP55 is a component of the Golgi stacking machinery. GRASP65, an N-ethylmaleimide-sensitive membrane protein required for the stacking of Golgi cisternae in a cell-free system [].; PDB: 3RLE_A 4EDJ_A.
Probab=97.43 E-value=0.00085 Score=52.08 Aligned_cols=74 Identities=16% Similarity=0.130 Sum_probs=49.1
Q ss_pred CceeEEEEEeecCC---CCCcEEEEECCCCcc-ccCCCC-CCEEEEECCEECCCCCHHHHHHHHhC-CCCeEEEEEEeCC
Q psy12310 50 HHSWGLRIAGGCDL---DSPIVITKVYPGTPA-AAELKR-GDIIRKIGDYDSRDLRHKDATNFFQS-SDTSISLGIQRNP 123 (201)
Q Consensus 50 ~~~~Gf~i~gG~~~---~~pi~V~~V~~gspA-~agL~~-GD~Il~Ing~~v~~~~~~~av~~ik~-~g~~v~L~v~R~~ 123 (201)
.+.+|++++--... ...+-|.+|.|+||| .|||++ .|.|+.+++..+.+.+.. ...++. .+..+.|.|....
T Consensus 25 ~g~LG~sv~~~~~~~~~~~~~~Vl~V~p~SPA~~AGL~p~~DyIig~~~~~l~~~~~l--~~~v~~~~~~~l~L~Vyns~ 102 (138)
T PF04495_consen 25 QGLLGISVRFESFEGAEEEGWHVLRVAPNSPAAKAGLEPFFDYIIGIDGGLLDDEDDL--FELVEANENKPLQLYVYNSK 102 (138)
T ss_dssp SSSS-EEEEEEE-TTGCCCEEEEEEE-TTSHHHHTT--TTTEEEEEETTCE--STCHH--HHHHHHTTTS-EEEEEEETT
T ss_pred CCCCcEEEEEecccccccceEEEeEecCCCHHHHCCccccccEEEEccceecCCHHHH--HHHHHHcCCCcEEEEEEECC
Confidence 35688888664432 446899999999999 899999 599999999888865444 344544 4889999998654
Q ss_pred CC
Q psy12310 124 PG 125 (201)
Q Consensus 124 ~~ 125 (201)
..
T Consensus 103 ~~ 104 (138)
T PF04495_consen 103 TD 104 (138)
T ss_dssp TT
T ss_pred CC
Confidence 43
No 50
>PRK09681 putative type II secretion protein GspC; Provisional
Probab=97.42 E-value=0.00034 Score=60.13 Aligned_cols=45 Identities=27% Similarity=0.320 Sum_probs=35.7
Q ss_pred ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCC--CCeEEEEEEeCCCC
Q psy12310 79 AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSS--DTSISLGIQRNPPG 125 (201)
Q Consensus 79 ~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~--g~~v~L~v~R~~~~ 125 (201)
++||++||++++|||.++.+..+ +.+++... ...++|+|+|+|..
T Consensus 222 ~~GLq~GDva~sING~dL~D~~q--a~~l~~~L~~~tei~ltVeRdGq~ 268 (276)
T PRK09681 222 ASGFKEGDIAIALNQQDFTDPRA--MIALMRQLPSMDSIQLTVLRKGAR 268 (276)
T ss_pred HcCCCCCCEEEEeCCeeCCCHHH--HHHHHHHhccCCeEEEEEEECCEE
Confidence 58999999999999999987644 33444322 58999999999864
No 51
>COG0265 DegQ Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.34 E-value=0.00055 Score=60.34 Aligned_cols=62 Identities=26% Similarity=0.341 Sum_probs=50.3
Q ss_pred CCCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEEEEEEeCCCC
Q psy12310 64 DSPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPPG 125 (201)
Q Consensus 64 ~~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~v~L~v~R~~~~ 125 (201)
..+++|..|.+++|| ++|++.||+|+++||..+.+.........-...+..+.+.+.|+++.
T Consensus 269 ~~G~~V~~v~~~spa~~agi~~Gdii~~vng~~v~~~~~l~~~v~~~~~g~~v~~~~~r~g~~ 331 (347)
T COG0265 269 AAGAVVLGVLPGSPAAKAGIKAGDIITAVNGKPVASLSDLVAAVASNRPGDEVALKLLRGGKE 331 (347)
T ss_pred CCceEEEecCCCChHHHcCCCCCCEEEEECCEEccCHHHHHHHHhccCCCCEEEEEEEECCEE
Confidence 346899999999999 99999999999999999998655443322233588999999999654
No 52
>KOG0609|consensus
Probab=97.04 E-value=0.003 Score=58.39 Aligned_cols=81 Identities=20% Similarity=0.254 Sum_probs=67.2
Q ss_pred eEEEEEecCCCCceeEEEEEeecCCCCCcEEEEECCCCcc--ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEE
Q psy12310 39 TFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA--AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSIS 116 (201)
Q Consensus 39 ~~~V~L~r~~~~~~~Gf~i~gG~~~~~pi~V~~V~~gspA--~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~v~ 116 (201)
...|.+.|. ...++|..+.--.. ..++|.+|..|+.| .+-|..||.|+.|||..+.+..-.+...+++.+...++
T Consensus 123 vriv~i~k~-~~eplG~Tik~~e~--~~~~vARI~~GG~~~r~glL~~GD~i~EvNGi~v~~~~~~e~q~~l~~~~G~it 199 (542)
T KOG0609|consen 123 VRIVRIVKN-TGEPLGATIRVEED--TKVVVARIMHGGMADRQGLLHVGDEILEVNGISVANKSPEELQELLRNSRGSIT 199 (542)
T ss_pred eEEEEEeec-CCCccceEEEeccC--CccEEeeeccCCcchhccceeeccchheecCeecccCCHHHHHHHHHhCCCcEE
Confidence 455677665 46889998875433 37999999999998 57799999999999999999999999999998888888
Q ss_pred EEEEeC
Q psy12310 117 LGIQRN 122 (201)
Q Consensus 117 L~v~R~ 122 (201)
+.|...
T Consensus 200 fkiiP~ 205 (542)
T KOG0609|consen 200 FKIIPS 205 (542)
T ss_pred EEEccc
Confidence 887654
No 53
>KOG3605|consensus
Probab=96.88 E-value=0.0026 Score=60.06 Aligned_cols=84 Identities=25% Similarity=0.357 Sum_probs=64.4
Q ss_pred EEEEEecCCCCceeEEEEEe-ecCCCC-CcEEEEECCCCcc-c-cCCCCCCEEEEECCEECCCCCHHHHHHHHhCCC--C
Q psy12310 40 FTVVIKRPNRHHSWGLRIAG-GCDLDS-PIVITKVYPGTPA-A-AELKRGDIIRKIGDYDSRDLRHKDATNFFQSSD--T 113 (201)
Q Consensus 40 ~~V~L~r~~~~~~~Gf~i~g-G~~~~~-pi~V~~V~~gspA-~-agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~g--~ 113 (201)
+.|.+.|- .+..||..|+- |-..-. .++|.....++|| . +.|-.||+|++|||..+-++...-+...||+.. +
T Consensus 647 KEVvv~K~-kGEiLGVViVESGWGSmLPTVViAnmm~~GpAarsgkLnIGDQiiaING~SLVGLPLstcQs~Ik~~KnQT 725 (829)
T KOG3605|consen 647 KEVVLEKH-KGEILGVVIVESGWGSILPTVVIANMMHGGPAARSGKLNIGDQIMSINGTSLVGLPLSTCQSIIKGLKNQT 725 (829)
T ss_pred ceeeeecc-cCceeeEEEEecCccccchHHHHHhcccCChhhhcCCccccceeEeecCceeccccHHHHHHHHhcccccc
Confidence 34555554 45788887754 222222 3688899999998 4 679999999999999999999999988998773 5
Q ss_pred eEEEEEEeCCC
Q psy12310 114 SISLGIQRNPP 124 (201)
Q Consensus 114 ~v~L~v~R~~~ 124 (201)
.|+|+|.+...
T Consensus 726 ~VkltiV~cpP 736 (829)
T KOG3605|consen 726 AVKLNIVSCPP 736 (829)
T ss_pred eEEEEEecCCC
Confidence 78888887653
No 54
>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]
Probab=96.59 E-value=0.0041 Score=57.50 Aligned_cols=63 Identities=29% Similarity=0.396 Sum_probs=44.0
Q ss_pred eeEEEEEeecCCCCCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEEEEEEeCCCC
Q psy12310 52 SWGLRIAGGCDLDSPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPPG 125 (201)
Q Consensus 52 ~~Gf~i~gG~~~~~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~v~L~v~R~~~~ 125 (201)
.+|..+ +.+ +....|..|.++||| .|||.+||.|++|||..-. +.. -.++..+.+.+.|.+.-
T Consensus 452 ~LGl~v--~~~-~g~~~i~~V~~~gPA~~AGl~~Gd~ivai~G~s~~-l~~-------~~~~d~i~v~~~~~~~L 515 (558)
T COG3975 452 YLGLKV--KSE-GGHEKITFVFPGGPAYKAGLSPGDKIVAINGISDQ-LDR-------YKVNDKIQVHVFREGRL 515 (558)
T ss_pred ccceEe--ccc-CCeeEEEecCCCChhHhccCCCccEEEEEcCcccc-ccc-------cccccceEEEEccCCce
Confidence 355554 333 345799999999999 9999999999999999111 111 12356777777776543
No 55
>COG3480 SdrC Predicted secreted protein containing a PDZ domain [Signal transduction mechanisms]
Probab=96.53 E-value=0.007 Score=52.84 Aligned_cols=60 Identities=12% Similarity=0.130 Sum_probs=48.2
Q ss_pred CcEEEEECCCCccccCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEEEEEEeCCCC
Q psy12310 66 PIVITKVYPGTPAAAELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPPG 125 (201)
Q Consensus 66 pi~V~~V~~gspA~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~v~L~v~R~~~~ 125 (201)
++++..|..++||..-|..||.|.+|||.++.+.......-.-+..|..|++...|.+..
T Consensus 131 gvyv~~v~~~~~~~gkl~~gD~i~avdg~~f~s~~e~i~~v~~~k~Gd~VtI~~~r~~~~ 190 (342)
T COG3480 131 GVYVLSVIDNSPFKGKLEAGDTIIAVDGEPFTSSDELIDYVSSKKPGDEVTIDYERHNET 190 (342)
T ss_pred eEEEEEccCCcchhceeccCCeEEeeCCeecCCHHHHHHHHhccCCCCeEEEEEEeccCC
Confidence 688999999999988899999999999999987654444333345599999999985443
No 56
>KOG3532|consensus
Probab=96.44 E-value=0.0098 Score=56.66 Aligned_cols=69 Identities=23% Similarity=0.374 Sum_probs=51.0
Q ss_pred CCceeEEEEEeecCCCCCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEEEEEEe
Q psy12310 49 RHHSWGLRIAGGCDLDSPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQR 121 (201)
Q Consensus 49 ~~~~~Gf~i~gG~~~~~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~v~L~v~R 121 (201)
.+.+.|+..-... ..-+.|..|.+++|| ++.+++||++++|||.++.. ..++.+.++.....|...+.|
T Consensus 384 ~s~~ig~vf~~~~--~~~v~v~tv~~ns~a~k~~~~~gdvlvai~~~pi~s--~~q~~~~~~s~~~~~~~l~~~ 453 (1051)
T KOG3532|consen 384 VSSPIGLVFDKNT--NRAVKVCTVEDNSLADKAAFKPGDVLVAINNVPIRS--ERQATRFLQSTTGDLTVLVER 453 (1051)
T ss_pred ccCceeEEEecCC--ceEEEEEEecCCChhhHhcCCCcceEEEecCccchh--HHHHHHHHHhcccceEEEEee
Confidence 4455665443211 346899999999999 99999999999999999985 466777888775555555444
No 57
>KOG1320|consensus
Probab=96.38 E-value=0.0092 Score=54.91 Aligned_cols=58 Identities=19% Similarity=0.399 Sum_probs=47.2
Q ss_pred CcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCC--CCeEEEEEEeCCCC
Q psy12310 66 PIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSS--DTSISLGIQRNPPG 125 (201)
Q Consensus 66 pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~--g~~v~L~v~R~~~~ 125 (201)
.++|..|.+++++ ..++++||+|++|||+++.++.|. ..+++.+ +++|.+..+|..+.
T Consensus 399 ~v~is~Vlp~~~~~~~~~~~g~~V~~vng~~V~n~~~l--~~~i~~~~~~~~v~vl~~~~~e~ 459 (473)
T KOG1320|consen 399 LVLVSQVLPGSINGGYGLKPGDQVVKVNGKPVKNLKHL--YELIEECSTEDKVAVLDRRSAED 459 (473)
T ss_pred EEEEEEeccCCCcccccccCCCEEEEECCEEeechHHH--HHHHHhcCcCceEEEEEecCccc
Confidence 4789999999999 899999999999999999998775 4456555 45787777666544
No 58
>KOG3938|consensus
Probab=96.38 E-value=0.007 Score=51.69 Aligned_cols=81 Identities=16% Similarity=0.242 Sum_probs=63.6
Q ss_pred CceEEEEEecCCCCceeEEEEEeecCCCCC-cEEEEECCCCcc-c-cCCCCCCEEEEECCEECCCCCHHHHHHHHhCC--
Q psy12310 37 QNTFTVVIKRPNRHHSWGLRIAGGCDLDSP-IVITKVYPGTPA-A-AELKRGDIIRKIGDYDSRDLRHKDATNFFQSS-- 111 (201)
Q Consensus 37 ~~~~~V~L~r~~~~~~~Gf~i~gG~~~~~p-i~V~~V~~gspA-~-agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~-- 111 (201)
.+...|.+.|+. ..||+.|.- .+.+ .||..|.+||.- . -.+++||.|-+|||..+-++.|-++..++|..
T Consensus 125 Gq~kEv~v~Kse--dalGlTITD---NG~GyAFIKrIkegsvidri~~i~VGd~IEaiNge~ivG~RHYeVArmLKel~r 199 (334)
T KOG3938|consen 125 GQAKEVEVVKSE--DALGLTITD---NGAGYAFIKRIKEGSVIDRIEAICVGDHIEAINGESIVGKRHYEVARMLKELPR 199 (334)
T ss_pred CcceeEEEEecc--cccceEEee---CCcceeeeEeecCCchhhhhhheeHHhHHHhhcCccccchhHHHHHHHHHhccc
Confidence 356678888764 569998853 2222 599999999997 3 57999999999999999999999999999866
Q ss_pred CCeEEEEEEeC
Q psy12310 112 DTSISLGIQRN 122 (201)
Q Consensus 112 g~~v~L~v~R~ 122 (201)
|...+|.+...
T Consensus 200 ge~ftlrLieP 210 (334)
T KOG3938|consen 200 GETFTLRLIEP 210 (334)
T ss_pred CCeeEEEeecc
Confidence 66666666544
No 59
>KOG1421|consensus
Probab=96.22 E-value=0.0076 Score=57.40 Aligned_cols=57 Identities=25% Similarity=0.426 Sum_probs=46.0
Q ss_pred cEEEEECCCCccccCCCCCCEEEEECCEECCCCCHHHHHHHH-hCCCCeEEEEEEeCCCC
Q psy12310 67 IVITKVYPGTPAAAELKRGDIIRKIGDYDSRDLRHKDATNFF-QSSDTSISLGIQRNPPG 125 (201)
Q Consensus 67 i~V~~V~~gspA~agL~~GD~Il~Ing~~v~~~~~~~av~~i-k~~g~~v~L~v~R~~~~ 125 (201)
++|..|.++|||...|++||.+++||+.-+.++. .+.+.+ ++.|..+.|+|+|++..
T Consensus 305 LvV~~vL~~gpa~k~Le~GDillavN~t~l~df~--~l~~iLDegvgk~l~LtI~Rggqe 362 (955)
T KOG1421|consen 305 LVVETVLPEGPAEKKLEPGDILLAVNSTCLNDFE--ALEQILDEGVGKNLELTIQRGGQE 362 (955)
T ss_pred EEEEEeccCCchhhccCCCcEEEEEcceehHHHH--HHHHHHhhccCceEEEEEEeCCEE
Confidence 6899999999997789999999999977766542 233344 45599999999999874
No 60
>COG3031 PulC Type II secretory pathway, component PulC [Intracellular trafficking and secretion]
Probab=96.19 E-value=0.025 Score=47.73 Aligned_cols=62 Identities=29% Similarity=0.356 Sum_probs=44.7
Q ss_pred CceeEEEEEeecCCCCCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCC--CCeEEEEEEeCCCC
Q psy12310 50 HHSWGLRIAGGCDLDSPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSS--DTSISLGIQRNPPG 125 (201)
Q Consensus 50 ~~~~Gf~i~gG~~~~~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~--g~~v~L~v~R~~~~ 125 (201)
.+-+||++.-|++ ++.- ..||+.||+.++||+.++.+- +++..++... -..+.|+|.|+|..
T Consensus 204 eki~Gyr~~pgkd------------~slF~~sglq~GDIavaiNnldltdp--~~m~~llq~l~~m~s~qlTv~R~G~r 268 (275)
T COG3031 204 EKIEGYRFEPGKD------------GSLFYKSGLQRGDIAVAINNLDLTDP--EDMFRLLQMLRNMPSLQLTVIRRGKR 268 (275)
T ss_pred CceEEEEecCCCC------------cchhhhhcCCCcceEEEecCcccCCH--HHHHHHHHhhhcCcceEEEEEecCcc
Confidence 3668888776665 3344 689999999999999998763 3333344332 47899999999865
No 61
>KOG1738|consensus
Probab=95.33 E-value=0.039 Score=52.02 Aligned_cols=71 Identities=21% Similarity=0.374 Sum_probs=58.5
Q ss_pred CCceeEEEEEeecCCCCCcEEEEECCCCcc--ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEEEEEEe
Q psy12310 49 RHHSWGLRIAGGCDLDSPIVITKVYPGTPA--AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQR 121 (201)
Q Consensus 49 ~~~~~Gf~i~gG~~~~~pi~V~~V~~gspA--~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~v~L~v~R 121 (201)
.+.+||+.|..-.+ .+.+|+.+.+++|| ...|..||.|++||+..+.++.+.-.+..++....-|.+++..
T Consensus 211 p~eglg~~I~Ssyd--g~h~~s~~~e~Spad~~~kI~dgdEv~qiN~qtvVgwqlk~vV~sL~~~~sgi~l~lkK 283 (638)
T KOG1738|consen 211 PSEGLGLYIDSSYD--GPHVTSKIFEQSPADYRQKILDGDEVLQINEQTVVGWQLKVVVSSLRETPAGIELTLKK 283 (638)
T ss_pred cccCCceEEeeecC--CceeccccccCChHHHhhcccCccceeeecccccccchhHhHHhhcccCcccceeeeec
Confidence 35779999977655 67899999999999 4789999999999999999999998888887775555555543
No 62
>smart00735 ZM ZASP-like motif. Short motif (26 amino acids) present in an alpha-actinin-binding protein, ZASP, and similar molecules.
Probab=94.62 E-value=0.014 Score=32.26 Aligned_cols=21 Identities=19% Similarity=0.324 Sum_probs=18.6
Q ss_pred cccCCCcccchHHHHHHHHHh
Q psy12310 175 QAVASPFELSSEHDLNYVIKE 195 (201)
Q Consensus 175 ~qf~~p~~~~s~~~i~~~~~~ 195 (201)
+|||+|+++|+.+++++.+..
T Consensus 5 ~qyn~P~glys~~n~~~~l~~ 25 (26)
T smart00735 5 KQYNSPIGLYSSENIAETLQG 25 (26)
T ss_pred cccCCCCCCCCcccHHHhhcc
Confidence 799999999999999887653
No 63
>KOG1703|consensus
Probab=94.59 E-value=0.018 Score=53.25 Aligned_cols=74 Identities=35% Similarity=0.646 Sum_probs=67.3
Q ss_pred eeEEEEEeecCCCCCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEEEEEEeCCCCC
Q psy12310 52 SWGLRIAGGCDLDSPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPPGE 126 (201)
Q Consensus 52 ~~Gf~i~gG~~~~~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~v~L~v~R~~~~~ 126 (201)
+|||++.+| ++..++.+..+.+++.+ .+.+.++|.|..+++..-..+.|.++...++..+..+.+.+.|.....
T Consensus 9 ~~~~r~~~~-~~~~~l~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 83 (479)
T KOG1703|consen 9 PWGFRLQGG-DFLQPLRILRVTPGGKAADAELDPGDIIAAIDGENEETMTHLEAQNKIKGSGSQLALTLSRSETSS 83 (479)
T ss_pred Cceeeeccc-ccccccceeccCCCCccccccccccccccccccccccccccccccCcccccccccccccccccccc
Confidence 799998887 77889999999999999 899999999999999999999999999888888999999999865443
No 64
>PF12812 PDZ_1: PDZ-like domain
Probab=92.19 E-value=0.23 Score=34.69 Aligned_cols=44 Identities=23% Similarity=0.236 Sum_probs=34.1
Q ss_pred CCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhC
Q psy12310 65 SPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQS 110 (201)
Q Consensus 65 ~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~ 110 (201)
.+.++.....|+++ +.++..|-+|.+|||+++.++.. .++.++.
T Consensus 30 ~~gv~v~~~~g~~~~~~~i~~g~iI~~Vn~kpt~~Ld~--f~~vvk~ 74 (78)
T PF12812_consen 30 VGGVYVAVSGGSLAFAGGISKGFIITSVNGKPTPDLDD--FIKVVKK 74 (78)
T ss_pred CCEEEEEecCCChhhhCCCCCCeEEEeECCcCCcCHHH--HHHHHHh
Confidence 34677778889999 56699999999999999998644 4444554
No 65
>KOG4407|consensus
Probab=90.84 E-value=0.26 Score=50.37 Aligned_cols=86 Identities=10% Similarity=0.086 Sum_probs=59.6
Q ss_pred CCCceEEEEEecCCCCceeEEEEEeecCC-------------------------CCCcEEEEECCCCcc-ccCCCCCCEE
Q psy12310 35 PHQNTFTVVIKRPNRHHSWGLRIAGGCDL-------------------------DSPIVITKVYPGTPA-AAELKRGDII 88 (201)
Q Consensus 35 ~~~~~~~V~L~r~~~~~~~Gf~i~gG~~~-------------------------~~pi~V~~V~~gspA-~agL~~GD~I 88 (201)
.+...+.|++.|+ +++|||.|+--.-+ ..-+++..+..++++ .+|+..||.|
T Consensus 43 S~~~~~~V~~rR~--nQGFGFTLRHFIaYPPEd~~a~Ss~sG~~~Gsa~~~~~~~~s~~~~Q~~s~~~~~nsG~~s~~~v 120 (1973)
T KOG4407|consen 43 SIQPKLIVIRRRP--NQGFGFTLRHFIAYPPEDDQASSSASGLVSGSATAATAASVSTNWPQEASSAAGSNSGSSSSVGV 120 (1973)
T ss_pred cCCCceEEEEecC--CCCcceeeeeeeecCchhhhhhhhhccccccchhcccccccccccchhcccCcccccCcccccce
Confidence 3445678899886 58999988652211 113577888888888 9999999999
Q ss_pred EEECCEECCCCCHHHHHHHHhCCCCeEEEEEEeCC
Q psy12310 89 RKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNP 123 (201)
Q Consensus 89 l~Ing~~v~~~~~~~av~~ik~~g~~v~L~v~R~~ 123 (201)
..|+|..+.+-+ ....-+++...+.+.+.|.-.+
T Consensus 121 ~~itG~e~~~~T-S~~~~~vk~~eT~~~~eV~~n~ 154 (1973)
T KOG4407|consen 121 AGITGLEPTSPT-SLPPYQVKAMETIFIKEVQANG 154 (1973)
T ss_pred eeecccccCCCc-cccHHHHhhhhhhhhhhhccCC
Confidence 999999988766 3333455555555555554443
No 66
>COG0750 Predicted membrane-associated Zn-dependent proteases 1 [Cell envelope biogenesis, outer membrane]
Probab=88.69 E-value=1.2 Score=39.31 Aligned_cols=53 Identities=19% Similarity=0.269 Sum_probs=40.1
Q ss_pred EEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCe---EEEEEEe
Q psy12310 68 VITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTS---ISLGIQR 121 (201)
Q Consensus 68 ~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~---v~L~v~R 121 (201)
.+..+...++| .+++++||+|+++|+.++.+++.-... .....+.. +.+.+.|
T Consensus 132 ~~~~v~~~s~a~~a~l~~Gd~iv~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~i~~~~ 188 (375)
T COG0750 132 VVGEVAPKSAAALAGLRPGDRIVAVDGEKVASWDDVRRL-LVAAAGDVFNLLTILVIR 188 (375)
T ss_pred eeeecCCCCHHHHcCCCCCCEEEeECCEEccCHHHHHHH-HHhccCCcccceEEEEEe
Confidence 45578999999 999999999999999999987544322 22333444 7788888
No 67
>KOG3834|consensus
Probab=88.63 E-value=0.92 Score=41.35 Aligned_cols=57 Identities=18% Similarity=0.213 Sum_probs=43.2
Q ss_pred CcEEEEECCCCcc-ccCCCCC-CEEEEECCEECCCCCHHHHHHHHhCCCCeEEEEEEeCC
Q psy12310 66 PIVITKVYPGTPA-AAELKRG-DIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNP 123 (201)
Q Consensus 66 pi~V~~V~~gspA-~agL~~G-D~Il~Ing~~v~~~~~~~av~~ik~~g~~v~L~v~R~~ 123 (201)
+..|.+|.++|+| .+||.+= |.|++|||..+..- .+....+++..-..|+|+|.-..
T Consensus 16 g~hvlkVqedSpa~~aglepffdFIvSI~g~rL~~d-nd~Lk~llk~~sekVkltv~n~k 74 (462)
T KOG3834|consen 16 GYHVLKVQEDSPAHKAGLEPFFDFIVSINGIRLNKD-NDTLKALLKANSEKVKLTVYNSK 74 (462)
T ss_pred eEEEEEeecCChHHhcCcchhhhhhheeCcccccCc-hHHHHHHHHhcccceEEEEEecc
Confidence 5678899999999 8998875 99999999999753 33344456655556999987543
No 68
>KOG0792|consensus
Probab=87.97 E-value=0.5 Score=47.32 Aligned_cols=62 Identities=24% Similarity=0.506 Sum_probs=54.9
Q ss_pred CceeEEEEEeecCCC-----CCcEEEEEC-------------CCCcc-c--cCCCCCCEEEEECCEECCCCCHHHHHHHH
Q psy12310 50 HHSWGLRIAGGCDLD-----SPIVITKVY-------------PGTPA-A--AELKRGDIIRKIGDYDSRDLRHKDATNFF 108 (201)
Q Consensus 50 ~~~~Gf~i~gG~~~~-----~pi~V~~V~-------------~gspA-~--agL~~GD~Il~Ing~~v~~~~~~~av~~i 108 (201)
.+.+||-+.||.+.. .|..+.+|. |+++| . -.+..||.+++|||.++....|+..+.+|
T Consensus 715 ~g~~g~~~~g~~dq~~~~~~~p~a~sRv~~~~p~~~~~~~~~p~s~~d~~~P~~~e~dq~~~ingr~~~~~~~~~~vs~i 794 (1144)
T KOG0792|consen 715 PGRFGFNLKGGLDQLQNLLNEPVAVSRVAGPGPLKMNGKLSEPESTADDCTPRLNEGDQVTSINGRDVSESEHDQVVSLI 794 (1144)
T ss_pred CccccccccchhhhhhccccccHHHHhhcccccchhcccccCCCCCccccccCCCcccceeeecccccccccccchHHHH
Confidence 577999999999875 788999999 88888 4 47999999999999999999999999888
Q ss_pred hCC
Q psy12310 109 QSS 111 (201)
Q Consensus 109 k~~ 111 (201)
+.+
T Consensus 795 rs~ 797 (1144)
T KOG0792|consen 795 RSP 797 (1144)
T ss_pred hhh
Confidence 766
No 69
>KOG4371|consensus
Probab=87.63 E-value=0.85 Score=45.79 Aligned_cols=82 Identities=22% Similarity=0.456 Sum_probs=59.9
Q ss_pred ceEEEEEecCCCCceeEEEEEeecCCCCCcEEEEECCCCcc--ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeE
Q psy12310 38 NTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA--AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSI 115 (201)
Q Consensus 38 ~~~~V~L~r~~~~~~~Gf~i~gG~~~~~pi~V~~V~~gspA--~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~v 115 (201)
+.+.|.+.|.. ..+|..+..-.. .+.|+... .-+| .-.|..||.++.+||+.+++..|.+++.++++-+..|
T Consensus 1147 ~~i~~~~~r~~--~~l~~~~a~~~~---~~~~~~~~-~~~~~~~pd~~~g~~l~~~n~i~~~~~~~~~~~~~~~~~~~~~ 1220 (1332)
T KOG4371|consen 1147 RVIDVELDRNE--GSLGVQIASLSG---RVCIKQLT-SEPAISHPDIRVGDVLLYVNGIAVEGKVHQEVVAMLRGGGDRV 1220 (1332)
T ss_pred ccccccCCCCC--CCCCceeccCcc---ceehhhcc-cCCCCCCCCcchhhhhhhccceeeechhhHHHHHHHhccCceE
Confidence 45567777653 557776653211 12333322 2234 5689999999999999999999999999999999999
Q ss_pred EEEEEeCCCC
Q psy12310 116 SLGIQRNPPG 125 (201)
Q Consensus 116 ~L~v~R~~~~ 125 (201)
.|-|+|....
T Consensus 1221 ~~~~~r~~~~ 1230 (1332)
T KOG4371|consen 1221 VLGVQRPPPA 1230 (1332)
T ss_pred EEEeecCCcc
Confidence 9999998764
No 70
>KOG2921|consensus
Probab=84.63 E-value=0.9 Score=41.12 Aligned_cols=36 Identities=19% Similarity=0.343 Sum_probs=32.1
Q ss_pred CCCcEEEEECCCCcc--ccCCCCCCEEEEECCEECCCC
Q psy12310 64 DSPIVITKVYPGTPA--AAELKRGDIIRKIGDYDSRDL 99 (201)
Q Consensus 64 ~~pi~V~~V~~gspA--~agL~~GD~Il~Ing~~v~~~ 99 (201)
+.++.|..|...||+ .-||.+||+|.++||.++...
T Consensus 219 g~gV~Vtev~~~Spl~gprGL~vgdvitsldgcpV~~v 256 (484)
T KOG2921|consen 219 GEGVTVTEVPSVSPLFGPRGLSVGDVITSLDGCPVHKV 256 (484)
T ss_pred CceEEEEeccccCCCcCcccCCccceEEecCCcccCCH
Confidence 457899999999999 469999999999999999874
No 71
>KOG4407|consensus
Probab=80.45 E-value=0.77 Score=47.14 Aligned_cols=56 Identities=18% Similarity=0.294 Sum_probs=48.7
Q ss_pred CcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEEEEEEe
Q psy12310 66 PIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQR 121 (201)
Q Consensus 66 pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~v~L~v~R 121 (201)
-+||..|.+.+|| -+.|+.||.++.||..++.++...+++.++++.--.+.|.+..
T Consensus 144 T~~~~eV~~n~~~~~a~LQ~~~~V~~v~~q~~A~i~~s~~~S~~~qt~~~~~~~~~P 200 (1973)
T KOG4407|consen 144 TIFIKEVQANGPAHYANLQTGDRVLMVNNQPIAGIAYSTIVSMIKQTPAVLTLHVVP 200 (1973)
T ss_pred hhhhhhhccCChhHHHhhhccceeEEeecCcccchhhhhhhhhhccCCCCCCceecc
Confidence 4699999999999 8999999999999999999999999999998775555555543
No 72
>KOG4371|consensus
Probab=64.72 E-value=7.4 Score=39.44 Aligned_cols=72 Identities=14% Similarity=0.211 Sum_probs=52.6
Q ss_pred CceeEEEEEeecCCCCCcEEEEECCCCcc--ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEEEEEEeC
Q psy12310 50 HHSWGLRIAGGCDLDSPIVITKVYPGTPA--AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRN 122 (201)
Q Consensus 50 ~~~~Gf~i~gG~~~~~pi~V~~V~~gspA--~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~v~L~v~R~ 122 (201)
-.++|+.+..-.- ..++++..+...+.| .+.++.||+++..+|.++.+.+-....+.++---+.+.+++.|.
T Consensus 1256 ~~~~~~~~~~~~~-s~~~~~~~~~~~~~a~~~~~~r~g~~~~~~~~~~~~~~~p~~~l~~~~~v~~p~~~~~~~~ 1329 (1332)
T KOG4371|consen 1256 MATLGLSLAKRTM-SDGIFIRNIAQDSAASSEGTLRVGDRLVSLDGEPVDGFTPATILEKLKLVQGPVQITVTRE 1329 (1332)
T ss_pred cccccccccccCc-CCceeeecccccccccccccccccceeeccCCccCCCCChHHHHHHhhhccCchhheehhh
Confidence 3567777654332 447888888877777 68899999999999999999877665555554455667777664
No 73
>PF11874 DUF3394: Domain of unknown function (DUF3394); InterPro: IPR021814 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 190 amino acids in length. This domain is found associated with PF06808 from PFAM.
Probab=57.74 E-value=35 Score=27.75 Aligned_cols=36 Identities=22% Similarity=0.319 Sum_probs=28.9
Q ss_pred eEEEEEeecCCCCCcEEEEECCCCcc-ccCCCCCCEEEEE
Q psy12310 53 WGLRIAGGCDLDSPIVITKVYPGTPA-AAELKRGDIIRKI 91 (201)
Q Consensus 53 ~Gf~i~gG~~~~~pi~V~~V~~gspA-~agL~~GD~Il~I 91 (201)
.|+.+.-- +..+.|..|..|||| ++|+..|+.|..|
T Consensus 113 ~GL~l~~e---~~~~~Vd~v~fgS~A~~~g~d~d~~I~~v 149 (183)
T PF11874_consen 113 AGLTLMEE---GGKVIVDEVEFGSPAEKAGIDFDWEITEV 149 (183)
T ss_pred CCCEEEee---CCEEEEEecCCCCHHHHcCCCCCcEEEEE
Confidence 56666532 335899999999999 8999999999876
No 74
>KOG3834|consensus
Probab=55.46 E-value=50 Score=30.44 Aligned_cols=54 Identities=22% Similarity=0.268 Sum_probs=38.0
Q ss_pred cEEEEECCCCcc-ccCCC-CCCEEEEE-CCEECCCCCHHHHHHHHhCC-CCeEEEEEEeCC
Q psy12310 67 IVITKVYPGTPA-AAELK-RGDIIRKI-GDYDSRDLRHKDATNFFQSS-DTSISLGIQRNP 123 (201)
Q Consensus 67 i~V~~V~~gspA-~agL~-~GD~Il~I-ng~~v~~~~~~~av~~ik~~-g~~v~L~v~R~~ 123 (201)
.-|.+|.+.||| .|||+ -+|.|+-+ +.+.-. .++...+|... +..|.|.|.--+
T Consensus 111 wHvl~V~p~SPaalAgl~~~~DYivG~~~~~~~~---~eDl~~lIeshe~kpLklyVYN~D 168 (462)
T KOG3834|consen 111 WHVLSVEPNSPAALAGLRPYTDYIVGIWDAVMHE---EEDLFTLIESHEGKPLKLYVYNHD 168 (462)
T ss_pred eeeeecCCCCHHHhcccccccceEecchhhhccc---hHHHHHHHHhccCCCcceeEeecC
Confidence 478889999999 89999 66999877 554332 33445566544 778888776443
No 75
>KOG1421|consensus
Probab=55.37 E-value=24 Score=34.56 Aligned_cols=47 Identities=23% Similarity=0.329 Sum_probs=37.8
Q ss_pred CCCCCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCC
Q psy12310 62 DLDSPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSS 111 (201)
Q Consensus 62 ~~~~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~ 111 (201)
|...++||.....|||| + +|.+-..|.+|||.++.++. +-+.+++..
T Consensus 859 dlp~gvyvt~rg~gspalq-~l~aa~fitavng~~t~~ld--df~~~~~~i 906 (955)
T KOG1421|consen 859 DLPEGVYVTSRGYGSPALQ-MLRAAHFITAVNGHDTNTLD--DFYHMLLEI 906 (955)
T ss_pred ccCCceEEeecccCChhHh-hcchheeEEEecccccCcHH--HHHHHHhhC
Confidence 33568999999999999 7 99999999999999998764 445555444
No 76
>KOG3686|consensus
Probab=43.12 E-value=38 Score=33.29 Aligned_cols=65 Identities=18% Similarity=0.092 Sum_probs=50.6
Q ss_pred ceEEEEEecCCCCceeEEEEEeecCCCCCcEEEEECCCCcc-ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCC
Q psy12310 38 NTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSS 111 (201)
Q Consensus 38 ~~~~V~L~r~~~~~~~Gf~i~gG~~~~~pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~ 111 (201)
+....++.|.+ ...|||.+. .-..+..+.+..-| .+++ |-+++.++...+..++++.+..++.-+
T Consensus 592 e~~~~~~~r~~-~~~~~fhv~------~e~~~~~~e~~~~~~~a~l--g~~~~~~~~~~~~Tla~~~~~~l~~~s 657 (740)
T KOG3686|consen 592 EVETRALYRAD-AEAVGFHVS------TEGNGDVQEKWKHAGNAEL--GSRENTRKKYTRETLATKFCDVLLVLS 657 (740)
T ss_pred eeeeeeecccc-cccccceec------ccccceeeccccccccccc--cceeeeehhhhhhhhhhhhhhhhhhhh
Confidence 46677787763 455999774 23567778877778 8999 999999999999999999888777654
No 77
>PF08967 DUF1884: Domain of unknown function (DUF1884); InterPro: IPR014418 This group represents an uncharacterised conserved protein.; PDB: 2PK8_A.
Probab=42.69 E-value=18 Score=25.64 Aligned_cols=16 Identities=19% Similarity=0.387 Sum_probs=11.0
Q ss_pred hHHHHHHHHHhcCCCC
Q psy12310 185 SEHDLNYVIKEQLGPK 200 (201)
Q Consensus 185 s~~~i~~~~~~~~~~~ 200 (201)
-+++++||..+|++||
T Consensus 14 ie~~inELk~dG~ePD 29 (85)
T PF08967_consen 14 IEEKINELKEDGFEPD 29 (85)
T ss_dssp HHHHHHHHHHTT----
T ss_pred HHHHHHHHHhcCCCCC
Confidence 4789999999999997
No 78
>COG5233 GRH1 Peripheral Golgi membrane protein [Intracellular trafficking and secretion]
Probab=40.04 E-value=15 Score=32.67 Aligned_cols=32 Identities=31% Similarity=0.430 Sum_probs=28.2
Q ss_pred CcEEEEECCCCcc-ccCCCCCCEEEEECCEECC
Q psy12310 66 PIVITKVYPGTPA-AAELKRGDIIRKIGDYDSR 97 (201)
Q Consensus 66 pi~V~~V~~gspA-~agL~~GD~Il~Ing~~v~ 97 (201)
-+-+.+|.+.+|| .+|+-.||.|+-+|+-++.
T Consensus 64 ~l~~lrv~~~~~~e~~~~~~~dyilg~n~Dp~~ 96 (417)
T COG5233 64 LLEVLRVNPESPAEKAGMVVGDYILGINEDPLR 96 (417)
T ss_pred hhhheeccccChhHhhccccceeEEeecCCcHH
Confidence 4578899999999 8999999999999987664
No 79
>cd07561 Peptidase_S41_CPP_like C-terminal processing peptidase-like; serine protease family S41. Bacterial protease homologs of the S41 family related to C-terminal processing peptidase (CPP). CPP-1 is believed to be important for the degradation of incorrectly synthesized proteins as well as protection from thermal and osmotic stresses. CPP is synthesized with an extension on its carboxyl-terminus and specifically recognizes a C-terminal tripeptide, but cleaves at variable distance from the C-terminus. The CPP active site consists of a serine/lysine catalytic dyad. Conservation of these residues is seen in the CPP-like proteins of this group. CPP proteins contain a PDZ domain that promotes protein-protein interactions and is important for substrate recognition however, most of CPP-like proteins only have an internal fragment or lack the PDZ domain.
Probab=39.57 E-value=21 Score=30.27 Aligned_cols=32 Identities=6% Similarity=0.050 Sum_probs=27.7
Q ss_pred CCcccccc--cccCCCcccchHHHHHHHHHhcCC
Q psy12310 167 DHQHVHRA--QAVASPFELSSEHDLNYVIKEQLG 198 (201)
Q Consensus 167 ~~~~ig~~--~qf~~p~~~~s~~~i~~~~~~~~~ 198 (201)
++.+|||+ ++|...+.....+++++|.++++.
T Consensus 62 ~~~~IGYi~i~~F~~~~~~~l~~a~~~l~~~~~~ 95 (256)
T cd07561 62 GGKKVGYLVYNSFTSGYDDELNQAFAEFKAQGVT 95 (256)
T ss_pred CCCcEEEEEECccccchHHHHHHHHHHHHHcCCC
Confidence 57789997 999999888999999999988753
No 80
>PRK13810 orotate phosphoribosyltransferase; Provisional
Probab=34.21 E-value=76 Score=25.61 Aligned_cols=38 Identities=18% Similarity=0.231 Sum_probs=32.7
Q ss_pred ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEE
Q psy12310 79 AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSIS 116 (201)
Q Consensus 79 ~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~v~ 116 (201)
...+.+||+++-|++.-.++-+..+++++++..|..|.
T Consensus 116 ~g~~~~g~rVlIVDDVitTGgS~~~~i~~l~~~Ga~V~ 153 (187)
T PRK13810 116 VGDLKPEDRIVMLEDVTTSGGSVREAIEVVREAGAYIK 153 (187)
T ss_pred EccCCCcCEEEEEEeccCCChHHHHHHHHHHHCCCEEE
Confidence 34678999999999999999999999999998876543
No 81
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=30.05 E-value=45 Score=17.86 Aligned_cols=15 Identities=7% Similarity=0.151 Sum_probs=13.0
Q ss_pred hHHHHHHHHHhcCCC
Q psy12310 185 SEHDLNYVIKEQLGP 199 (201)
Q Consensus 185 s~~~i~~~~~~~~~~ 199 (201)
..+.+++|++.|+.|
T Consensus 20 a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 20 ALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHhCCCC
Confidence 577889999999988
No 82
>COG0461 PyrE Orotate phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=29.86 E-value=1e+02 Score=25.44 Aligned_cols=38 Identities=8% Similarity=0.095 Sum_probs=33.1
Q ss_pred ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEE
Q psy12310 79 AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSIS 116 (201)
Q Consensus 79 ~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~v~ 116 (201)
.++..+|++++-|+++-+.+-+..+++..++..|..|.
T Consensus 106 eG~~~~G~kVvvVEDViTTG~Si~eai~~l~~~G~~V~ 143 (201)
T COG0461 106 EGGEVKGEKVVVVEDVITTGGSILEAVEALREAGAEVV 143 (201)
T ss_pred EecCCCCCEEEEEEecccCCHhHHHHHHHHHHcCCeEE
Confidence 45666999999999999999999999999999976654
No 83
>TIGR01744 XPRTase xanthine phosphoribosyltransferase. This model represent a xanthine-specific phosphoribosyltransferase of Bacillus subtilis and closely related proteins from other species, mostly from other Gram-positive bacteria. The adjacent gene is a xanthine transporter; B. subtilis can import xanthine for the purine salvage pathway or for catabolism to obtain nitrogen.
Probab=28.97 E-value=91 Score=25.22 Aligned_cols=42 Identities=14% Similarity=0.211 Sum_probs=34.3
Q ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEE---EEEEeC
Q psy12310 81 ELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSIS---LGIQRN 122 (201)
Q Consensus 81 gL~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~v~---L~v~R~ 122 (201)
.+.+||+++-|++.-.++-+...++++++.+|..+. ..+.|.
T Consensus 113 ~l~~G~rVLIVDDvvtTGgT~~a~~~ll~~aGa~Vvgv~~lvd~~ 157 (191)
T TIGR01744 113 FLSDQDRVLIIDDFLANGQAAHGLVDIAKQAGAKIAGIGIVIEKS 157 (191)
T ss_pred hCCCcCEEEEEEehhccChHHHHHHHHHHHCCCEEEEEEEEEEec
Confidence 477999999999999999999999999999976543 334454
No 84
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=26.32 E-value=76 Score=25.65 Aligned_cols=35 Identities=14% Similarity=0.230 Sum_probs=31.4
Q ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeE
Q psy12310 81 ELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSI 115 (201)
Q Consensus 81 gL~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~v 115 (201)
.+.+||+++-|++.-.++-+...++++++.+|..+
T Consensus 113 ~i~~G~rVlIVDDviaTGgT~~a~~~lv~~aGa~v 147 (189)
T PRK09219 113 FLSEGDRVLIIDDFLANGQAALGLIDIIEQAGAKV 147 (189)
T ss_pred hCCCCCEEEEEeehhhcChHHHHHHHHHHHCCCEE
Confidence 57899999999999999999999999999997654
No 85
>COG1625 Fe-S oxidoreductase, related to NifB/MoaA family [Energy production and conversion]
Probab=26.00 E-value=57 Score=29.90 Aligned_cols=35 Identities=23% Similarity=0.292 Sum_probs=29.1
Q ss_pred cEEEEECCCCcc-ccCCCCCCEEEEEC-CEECCCCCH
Q psy12310 67 IVITKVYPGTPA-AAELKRGDIIRKIG-DYDSRDLRH 101 (201)
Q Consensus 67 i~V~~V~~gspA-~agL~~GD~Il~In-g~~v~~~~~ 101 (201)
-.|..+.+++.+ ..|+.+||.++.|| |..+..+..
T Consensus 3 ~~i~~v~~~~~~d~~Gfe~~~~l~~Vn~~~~~~~c~~ 39 (414)
T COG1625 3 AKISKVGGISGADCDGFEEGDYLLKVNPGFGCKDCIP 39 (414)
T ss_pred cceeeccCCCcccccCccccceeeecCCCCCCCcCCC
Confidence 357788999999 89999999999999 877776543
No 86
>PRK04199 rpl10e 50S ribosomal protein L10e; Reviewed
Probab=25.51 E-value=90 Score=25.14 Aligned_cols=34 Identities=21% Similarity=0.335 Sum_probs=22.2
Q ss_pred CCcc--ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCC
Q psy12310 75 GTPA--AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSS 111 (201)
Q Consensus 75 gspA--~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~ 111 (201)
|.|. .+.+++|++|+.|.+... +.+.|.+.++.+
T Consensus 117 G~p~~wva~Vk~G~ilfei~~~~~---~~~~akeAlr~a 152 (172)
T PRK04199 117 GKPVGTAARVEKGQKIFTVRVNPE---HLEAAKEALRRA 152 (172)
T ss_pred CCccEEEEEECcCCEEEEEEecCC---CHHHHHHHHHHh
Confidence 4454 467899999999987654 234455555544
No 87
>cd01433 Ribosomal_L16_L10e Ribosomal_L16_L10e: L16 is an essential protein in the large ribosomal subunit of bacteria, mitochondria, and chloroplasts. Large subunits that lack L16 are defective in peptidyl transferase activity, peptidyl-tRNA hydrolysis activity, association with the 30S subunit, binding of aminoacyl-tRNA and interaction with antibiotics. L16 is required for the function of elongation factor P (EF-P), a protein involved in peptide bond synthesis through the stimulation of peptidyl transferase activity by the ribosome. Mutations in L16 and the adjoining bases of 23S rRNA confer antibiotic resistance in bacteria, suggesting a role for L16 in the formation of the antibiotic binding site. The GTPase RbgA (YlqF) is essential for the assembly of the large subunit, and it is believed to regulate the incorporation of L16. L10e is the archaeal and eukaryotic cytosolic homolog of bacterial L16. L16 and L10e exhibit structural differences at the N-terminus.
Probab=25.42 E-value=60 Score=23.83 Aligned_cols=33 Identities=15% Similarity=0.272 Sum_probs=23.1
Q ss_pred ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeE
Q psy12310 79 AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSI 115 (201)
Q Consensus 79 ~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~v 115 (201)
.+.+++|+.|+++.|.+. ...+...++.+...+
T Consensus 73 ~a~v~~G~iifEi~~~~~----~~~~~~alk~a~~Kl 105 (112)
T cd01433 73 VARVKPGQILFEVRGVPE----EEVAKEALRRAAKKL 105 (112)
T ss_pred EEEECCCCEEEEEeCcCc----HHHHHHHHHHhhccC
Confidence 367889999999988875 455566666554444
No 88
>PRK09203 rplP 50S ribosomal protein L16; Reviewed
Probab=24.86 E-value=62 Score=24.94 Aligned_cols=31 Identities=19% Similarity=0.252 Sum_probs=21.7
Q ss_pred ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCe
Q psy12310 79 AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTS 114 (201)
Q Consensus 79 ~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~ 114 (201)
.+.+++|++|++|.| .+...|...++.+...
T Consensus 94 varVk~G~iifEi~~-----~~~~~a~~al~~a~~K 124 (138)
T PRK09203 94 VAVVKPGRILFEIAG-----VSEELAREALRLAAAK 124 (138)
T ss_pred EEEECCCCEEEEEeC-----CCHHHHHHHHHHHhcc
Confidence 467889999999988 2345566666655443
No 89
>PRK05500 bifunctional orotidine 5'-phosphate decarboxylase/orotate phosphoribosyltransferase protein; Validated
Probab=21.27 E-value=1.5e+02 Score=27.71 Aligned_cols=38 Identities=8% Similarity=0.156 Sum_probs=33.2
Q ss_pred ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEE
Q psy12310 79 AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSIS 116 (201)
Q Consensus 79 ~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~~v~ 116 (201)
++.+.+||.++-|+++-+++-+..+++++++..|..|.
T Consensus 387 eG~~~~G~rVlIVDDViTTGgSi~eaie~l~~aG~~V~ 424 (477)
T PRK05500 387 EGNFHPGETVVVVDDILITGKSVMEGAEKLKSAGLNVR 424 (477)
T ss_pred ecCCCCcCEEEEEEeccccCHHHHHHHHHHHHCCCEEE
Confidence 35588999999999999999999999999998876554
No 90
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=21.16 E-value=96 Score=16.20 Aligned_cols=18 Identities=6% Similarity=0.135 Sum_probs=14.7
Q ss_pred chHHHHHHHHHhcCCCCC
Q psy12310 184 SSEHDLNYVIKEQLGPKD 201 (201)
Q Consensus 184 ~s~~~i~~~~~~~~~~~~ 201 (201)
...+.+.+|.+.|+.|+.
T Consensus 18 ~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 18 EALELFKEMLERGIEPDV 35 (35)
T ss_pred HHHHHHHHHHHcCCCCCC
Confidence 456788999999999973
No 91
>TIGR01164 rplP_bact ribosomal protein L16, bacterial/organelle. This model describes bacterial and organellar ribosomal protein L16. The homologous protein of the eukaryotic cytosol is designated L10
Probab=20.77 E-value=81 Score=23.89 Aligned_cols=30 Identities=23% Similarity=0.338 Sum_probs=21.2
Q ss_pred ccCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCC
Q psy12310 79 AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDT 113 (201)
Q Consensus 79 ~agL~~GD~Il~Ing~~v~~~~~~~av~~ik~~g~ 113 (201)
.+.+++|++|++|.+ .+...|...++.+..
T Consensus 93 varV~~G~ilfEi~~-----~~~~~a~~al~~a~~ 122 (126)
T TIGR01164 93 VAVVKPGKILFEIAG-----VPEEVAREAFRLAAS 122 (126)
T ss_pred EEEECCCCEEEEEeC-----CCHHHHHHHHHHHHh
Confidence 467899999999988 344556666665543
Done!