RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12310
(201 letters)
>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural
genomics consortium, SGC; 1.11A {Homo sapiens}
Length = 89
Score = 87.0 bits (216), Expect = 6e-23
Identities = 28/89 (31%), Positives = 47/89 (52%), Gaps = 4/89 (4%)
Query: 38 NTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAA-AELKRGDIIRKIGDYDS 96
++F VV++ P WG R+ GG D + P+ I+++ PG AA A + GD + I ++
Sbjct: 3 DSFKVVLEGPA---PWGFRLQGGKDFNVPLSISRLTPGGKAAQAGVAVGDWVLSIDGENA 59
Query: 97 RDLRHKDATNFFQSSDTSISLGIQRNPPG 125
L H +A N ++ +SLG+ R
Sbjct: 60 GSLTHIEAQNKIRACGERLSLGLSRAITS 88
>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere,
structural protein; NMR {Homo sapiens} SCOP: b.36.1.1
PDB: 1wjl_A
Length = 85
Score = 86.5 bits (215), Expect = 9e-23
Identities = 25/85 (29%), Positives = 51/85 (60%), Gaps = 4/85 (4%)
Query: 40 FTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAA-AELKRGDIIRKIGDYDSRD 98
++V + P WG R+ GG D + P+ I+++ PG+ AA ++L +GD++ I ++
Sbjct: 3 YSVTLTGPGP---WGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDT 59
Query: 99 LRHKDATNFFQSSDTSISLGIQRNP 123
+ H +A N +S+ ++SL +Q++
Sbjct: 60 MTHLEAQNKIKSASYNLSLTLQKSK 84
>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics,
structural genomics consort metal binding protein; 1.70A
{Homo sapiens} PDB: 3pdv_A
Length = 87
Score = 86.2 bits (214), Expect = 1e-22
Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 4/84 (4%)
Query: 39 TFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAA-AELKRGDIIRKIGDYDSR 97
TV + P WG RI GG D +PI++TKV A A+L+ GDII I +
Sbjct: 3 ALTVDVAGPA---PWGFRITGGRDFHTPIMVTKVAERGKAKDADLRPGDIIVAINGESAE 59
Query: 98 DLRHKDATNFFQSSDTSISLGIQR 121
+ H +A + + S + + L + R
Sbjct: 60 GMLHAEAQSKIRQSPSPLRLQLDR 83
>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, unknown function; NMR {Mus musculus}
SCOP: b.36.1.1
Length = 94
Score = 86.2 bits (214), Expect = 1e-22
Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 4/87 (4%)
Query: 39 TFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAA-AELKRGDIIRKIGDYDSR 97
TV + P WG RI+GG D +PI++TKV A A+L+ GDII I +
Sbjct: 7 GLTVDVAGPA---PWGFRISGGRDFHTPIIVTKVTERGKAEAADLRPGDIIVAINGQSAE 63
Query: 98 DLRHKDATNFFQSSDTSISLGIQRNPP 124
++ H +A + + S + + L + R+
Sbjct: 64 NMLHAEAQSKIRQSASPLRLQLDRSSG 90
>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 94
Score = 86.2 bits (214), Expect = 2e-22
Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 4/86 (4%)
Query: 39 TFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAA-AELKRGDIIRKIGDYDSR 97
+V ++ P+ WG R+ GG D +P+ I++V+ G+ AA A L GD+I+ I +
Sbjct: 9 PHSVTLRGPS---PWGFRLVGGRDFSAPLTISRVHAGSKAALAALCPGDLIQAINGESTE 65
Query: 98 DLRHKDATNFFQSSDTSISLGIQRNP 123
+ H +A N + ++L + P
Sbjct: 66 LMTHLEAQNRIKGCHDHLTLSVSSGP 91
>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog,
phosphorylation, signaling PR LIM domain, PDZ domain;
1.5A {Homo sapiens}
Length = 88
Score = 85.0 bits (211), Expect = 3e-22
Identities = 23/85 (27%), Positives = 46/85 (54%), Gaps = 4/85 (4%)
Query: 38 NTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAA-AELKRGDIIRKIGDYDS 96
+ ++V + P WG R+ GG D + P+ I+ + G AA A ++ GD++ I ++
Sbjct: 3 SNYSVSLVGPA---PWGFRLQGGKDFNMPLTISSLKDGGKAAQANVRIGDVVLSIDGINA 59
Query: 97 RDLRHKDATNFFQSSDTSISLGIQR 121
+ + H +A N + S+++ +QR
Sbjct: 60 QGMTHLEAQNKIKGCTGSLNMTLQR 84
>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ
domain, cytoskeleton, actin binding, structural
genomics; NMR {Mus musculus} SCOP: b.36.1.1
Length = 103
Score = 83.9 bits (208), Expect = 2e-21
Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 4/91 (4%)
Query: 39 TFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAA-AELKRGDIIRKIGDYDSR 97
+ VV+ P WG R++GG D + P+VIT++ PG+ AA A L GD+I I + +
Sbjct: 6 SGNVVLPGPA---PWGFRLSGGIDFNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTE 62
Query: 98 DLRHKDATNFFQSSDTSISLGIQRNPPGEKK 128
+ H DA + +++ + L I R
Sbjct: 63 SMTHADAQDRIKAASYQLCLKIDRAETRLWS 93
>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics,
structural genomics consort unknown function; HET: PG4;
1.50A {Homo sapiens} PDB: 2v1w_A*
Length = 91
Score = 82.4 bits (204), Expect = 4e-21
Identities = 26/88 (29%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 38 NTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAA-AELKRGDIIRKIGDYDS 96
T + ++ P WG R+ GG D + P+ I++V PG+ AA A L GD+I I ++
Sbjct: 3 TTQQIDLQGPG---PWGFRLVGGKDFEQPLAISRVTPGSKAALANLCIGDVITAIDGENT 59
Query: 97 RDLRHKDATNFFQSSDTSISLGIQRNPP 124
++ H +A N + +++L + R+
Sbjct: 60 SNMTHLEAQNRIKGCTDNLTLTVARSEH 87
>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken
structural genomics/proteomics initiative, RSGI, unknown
function; NMR {Mus musculus} SCOP: b.36.1.1
Length = 103
Score = 82.8 bits (205), Expect = 4e-21
Identities = 24/96 (25%), Positives = 47/96 (48%), Gaps = 4/96 (4%)
Query: 39 TFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAA-AELKRGDIIRKIGDYDSR 97
+ +V + P WG R+ GG D + P+ I+ + G A+ A ++ GD++ I ++
Sbjct: 6 SGSVSLVGPA---PWGFRLQGGKDFNMPLTISSLKDGGKASQAHVRIGDVVLSIDGISAQ 62
Query: 98 DLRHKDATNFFQSSDTSISLGIQRNPPGEKKAASGS 133
+ H +A N ++ S+++ +QR K S
Sbjct: 63 GMTHLEAQNKIKACTGSLNMTLQRASAAAKSEPVSS 98
>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 93
Score = 70.4 bits (173), Expect = 2e-16
Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 4/88 (4%)
Query: 39 TFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAAAE--LKRGDIIRKIGDYDS 96
+ V + + + G I GG + +SPI I++V PG A LKRGD + +
Sbjct: 6 SGVVELPKTDE--GLGFNIMGGKEQNSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSV 63
Query: 97 RDLRHKDATNFFQSSDTSISLGIQRNPP 124
+H+ A +++ S+ L ++ P
Sbjct: 64 EGEQHEKAVELLKAAQGSVKLVVRSGPS 91
>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform
B; GOPC PDZ domain, structural protein; NMR {Homo
sapiens}
Length = 103
Score = 70.5 bits (173), Expect = 2e-16
Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 3/90 (3%)
Query: 41 TVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAAAE--LKRGDIIRKIGDYDSRD 98
V++ + + H G+ I GG + PI+I++++PG PA L GD I + + RD
Sbjct: 12 KVLLLKED-HEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRD 70
Query: 99 LRHKDATNFFQSSDTSISLGIQRNPPGEKK 128
+HK+A I +
Sbjct: 71 TKHKEAVTILSQQRGEIEFEVVYVALEHHH 100
>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1
interacting protein 1, activin receptor interacting
protein 1; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 70.0 bits (172), Expect = 3e-16
Identities = 23/98 (23%), Positives = 42/98 (42%), Gaps = 5/98 (5%)
Query: 29 SGKPAQPHQNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAAAE--LKRGD 86
SG Q FTV +++ + +G I GG + + + ++ PA ++ GD
Sbjct: 3 SGSSGQDFD-YFTVDMEKGAK--GFGFSIRGGREYKMDLYVLRLAEDGPAIRNGRMRVGD 59
Query: 87 IIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPP 124
I +I +RD+ H A +S + L ++R
Sbjct: 60 QIIEINGESTRDMTHARAIELIKSGGRRVRLLLKRGTG 97
>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural
genomics/proteomics initiative, RSGI, unknown function;
NMR {Mus musculus} SCOP: b.36.1.1
Length = 104
Score = 70.1 bits (172), Expect = 3e-16
Identities = 25/100 (25%), Positives = 41/100 (41%), Gaps = 3/100 (3%)
Query: 26 TRKSGKPAQPHQNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAAAE-LKR 84
+ SG V +K+P G I GG I I+KV P + A L+
Sbjct: 3 SGSSGNNELTQFLPRIVTLKKPP-GAQLGFNIRGGKASQLGIFISKVIPDSDAHRAGLQE 61
Query: 85 GDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPP 124
GD + + D D +D+ H A +++ IS+ ++
Sbjct: 62 GDQVLAVNDVDFQDIEHSKAVEILKTA-REISMRVRFFSG 100
>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated
protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 96
Score = 69.3 bits (170), Expect = 4e-16
Identities = 19/91 (20%), Positives = 38/91 (41%), Gaps = 4/91 (4%)
Query: 40 FTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAAAELKRGDIIRKIGDYDSRDL 99
TV I + +G I+ P+ + V G A +L GD I ++ + + DL
Sbjct: 10 HTVKIDKDTLLQDYGFHISE----SLPLTVVAVTAGGSAHGKLFPGDQILQMNNEPAEDL 65
Query: 100 RHKDATNFFQSSDTSISLGIQRNPPGEKKAA 130
+ A + + ++ S+S+ + R +
Sbjct: 66 SWERAVDILREAEDSLSITVVRCTSSGPSSG 96
>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein
1; transferase, STRU genomics, structural genomics
consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo
sapiens}
Length = 112
Score = 69.3 bits (170), Expect = 7e-16
Identities = 16/92 (17%), Positives = 42/92 (45%), Gaps = 4/92 (4%)
Query: 35 PHQNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAAAE--LKRGDIIRKIG 92
+ +TV ++R + +G + GG + + + + ++ PA ++ GD I +I
Sbjct: 21 QSMDFYTVELERGAK--GFGFSLRGGREYNMDLYVLRLAEDGPAERSGKMRIGDEILEIN 78
Query: 93 DYDSRDLRHKDATNFFQSSDTSISLGIQRNPP 124
+++++H A ++ + L ++R
Sbjct: 79 GETTKNMKHSRAIELIKNGGRRVRLFLKRGET 110
>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein
1; PDZ domain, ATP-binding, cell junction, cell
membrane; NMR {Homo sapiens} PDB: 2kpl_A
Length = 129
Score = 69.8 bits (171), Expect = 7e-16
Identities = 26/118 (22%), Positives = 47/118 (39%), Gaps = 7/118 (5%)
Query: 31 KPAQPHQNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAAAE--LKRGDII 88
P++ +++ +R +G + GG + D + I + PAA + ++ GD+I
Sbjct: 11 NPSELKGKFIHTKLRKSSR--GFGFTVVGGDEPDEFLQIKSLVLDGPAALDGKMETGDVI 68
Query: 89 RKIGDYDSRDLRHKDATNFFQS--SDTSISLGIQRNPPGEKKA-ASGSRSVTPLPIVD 143
+ D H FQS S+ L + R P + VT + I+D
Sbjct: 69 VSVNDTCVLGHTHAQVVKIFQSIPIGASVDLELCRGYPLPFDPDDPNTSLVTSVAILD 126
>2jil_A GRIP1 protein, glutamate receptor interacting protein-1;
endoplasmic reticulum, postsynaptic membrane, membrane,
MEMB protein; 1.5A {Homo sapiens}
Length = 97
Score = 68.4 bits (168), Expect = 1e-15
Identities = 23/92 (25%), Positives = 37/92 (40%), Gaps = 8/92 (8%)
Query: 39 TFTVVIKRPNRHHSWGLRIAGGCD----LDSPIVITKVYPGTPAAAE--LKRGDIIRKIG 92
T V + + ++G I GG P+VIT V PG PA E +K GD + +
Sbjct: 4 TVEVTLHKEGN--TFGFVIRGGAHDDRNKSRPVVITSVRPGGPADREGTIKPGDRLLSVD 61
Query: 93 DYDSRDLRHKDATNFFQSSDTSISLGIQRNPP 124
H +A + + +L I+ +
Sbjct: 62 GIRLLGTTHAEAMSILKQCGQEAALLIEYDVS 93
>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 100
Score = 68.5 bits (168), Expect = 1e-15
Identities = 19/97 (19%), Positives = 32/97 (32%), Gaps = 2/97 (2%)
Query: 30 GKPAQPHQNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAAAE-LKRGDII 88
G + V + G + GG + I ++KV G+ A L GD I
Sbjct: 1 GSSGSSGSDIIHSVRVEKSPAGRLGFSVRGGSEHGLGIFVSKVEEGSSAERAGLCVGDKI 60
Query: 89 RKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPPG 125
++ A SS + + ++R G
Sbjct: 61 TEVNGLSLESTTMGSAVKVLTSSSR-LHMMVRRMGSG 96
>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer,
membrane protein-oxidoreductase CO; 1.90A {Mus musculus}
SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A
Length = 90
Score = 67.3 bits (165), Expect = 3e-15
Identities = 19/88 (21%), Positives = 36/88 (40%), Gaps = 3/88 (3%)
Query: 36 HQNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAAAE--LKRGDIIRKIGD 93
V +++ + G+ I GG + PI+I+K++ G A L GD I +
Sbjct: 2 SLQRRRVTVRKAD-AGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNG 60
Query: 94 YDSRDLRHKDATNFFQSSDTSISLGIQR 121
D H +A + + + L ++
Sbjct: 61 EDLSSATHDEAVQALKKTGKEVVLEVKY 88
>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 67.7 bits (166), Expect = 3e-15
Identities = 26/101 (25%), Positives = 43/101 (42%), Gaps = 7/101 (6%)
Query: 29 SGKPAQPHQNTFTVVIKRPNRHHSWGLRIAGGCD--LDSPIVITKVYPGTPAAAE--LKR 84
SG Q F+V + R +GL + GG D D+P+ + + PA L+
Sbjct: 3 SGSSGQASG-HFSVELVRGYA--GFGLTLGGGRDVAGDTPLAVRGLLKDGPAQRCGRLEV 59
Query: 85 GDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPPG 125
GD++ I ++ L H A ++ + L I+R G
Sbjct: 60 GDLVLHINGESTQGLTHAQAVERIRAGGPQLHLVIRRPLSG 100
>2edp_A Fragment, shroom family member 4; APX/shroom family member,
KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 100
Score = 67.4 bits (165), Expect = 3e-15
Identities = 19/99 (19%), Positives = 38/99 (38%), Gaps = 6/99 (6%)
Query: 29 SGKPAQPHQNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAA--AELKRGD 86
S + V ++ WG + GG + P+ ++K+ G AA +++ GD
Sbjct: 2 SSGSSGGSFQYVPVQLQGGA---PWGFTLKGGLEHCEPLTVSKIEDGGKAALSQKMRTGD 58
Query: 87 IIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPPG 125
+ I ++A + S + L ++R G
Sbjct: 59 ELVNINGTPLYGS-RQEALILIKGSFRILKLIVRRRNSG 96
>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain, structural
genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 67.3 bits (165), Expect = 3e-15
Identities = 19/105 (18%), Positives = 36/105 (34%), Gaps = 6/105 (5%)
Query: 30 GKPAQPHQNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAAAE--LKRGDI 87
G V ++R +G RI GG + PI+I V A + L GD
Sbjct: 1 GSSGSSGYKELDVHLRRMES--GFGFRILGGDEPGQPILIGAVIAMGSADRDGRLHPGDE 58
Query: 88 IRKIGDYDSRDLRHKDATNFFQSS--DTSISLGIQRNPPGEKKAA 130
+ + H+ + + + ++L ++R +
Sbjct: 59 LVYVDGIPVAGKTHRYVIDLMHHAARNGQVNLTVRRKVLSGPSSG 103
>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase,
protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A
Length = 125
Score = 67.9 bits (166), Expect = 3e-15
Identities = 21/117 (17%), Positives = 40/117 (34%), Gaps = 7/117 (5%)
Query: 24 IPTRKSGKPAQPHQNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAAAE-- 81
I K G P P V +++ + + G+ I GG + I +V+ TPAA +
Sbjct: 9 IEEDKLGIPTVPG----KVTLQK-DAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGT 63
Query: 82 LKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPPGEKKAASGSRSVTP 138
+ GD I + + + Q +++ + K+
Sbjct: 64 VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQADPKQLEVLFNGPGI 120
>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein;
structural protein-hydrolase complex, peptide binding
protei; NMR {Homo sapiens}
Length = 112
Score = 67.5 bits (165), Expect = 3e-15
Identities = 22/106 (20%), Positives = 42/106 (39%), Gaps = 4/106 (3%)
Query: 17 TSTNQALIPTRKSGKPAQPHQNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGT 76
+ + + + +++K + G+ I GG + PI+I++++PG
Sbjct: 7 HHHHSSGHIEGRHMENLYFQGIRKVLLLKEDHE--GLGISITGGKEHGVPILISEIHPGQ 64
Query: 77 PAAAE--LKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQ 120
PA L GD I + + RD +HK+A I +
Sbjct: 65 PADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQQRGEIEFEVV 110
>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain,
ptpase, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: b.36.1.1
Length = 119
Score = 67.6 bits (165), Expect = 4e-15
Identities = 30/118 (25%), Positives = 49/118 (41%), Gaps = 8/118 (6%)
Query: 25 PTRKSGKPAQPHQNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAA---AE 81
+ SG PH N + +K + +G + GG D P+++++V PGTPA
Sbjct: 2 SSGSSGNGGIPHDNLVLIRMKPDE-NGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPR 60
Query: 82 LKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTS----ISLGIQRNPPGEKKAASGSRS 135
L GD + I D + H F ++S + L ++ N + SG S
Sbjct: 61 LNEGDQVVLINGRDIAEHTHDQVVLFIKASCERHSGELMLLVRPNAVYDVVEESGPSS 118
>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc,
LNX2_human, zinc-finger, polymorphism, ring finger
protein 1; 1.3A {Homo sapiens}
Length = 95
Score = 66.9 bits (164), Expect = 4e-15
Identities = 18/92 (19%), Positives = 35/92 (38%), Gaps = 3/92 (3%)
Query: 37 QNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAAAE--LKRGDIIRKIGDY 94
V + + + G+++ D + + I + G AA + L D + I +
Sbjct: 2 MEILQVALHKRDSGEQLGIKLVRRTD-EPGVFILDLLEGGLAAQDGRLSSNDRVLAINGH 60
Query: 95 DSRDLRHKDATNFFQSSDTSISLGIQRNPPGE 126
D + + A Q+S ++L I R E
Sbjct: 61 DLKYGTPELAAQIIQASGERVNLTIARPGKPE 92
>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein
1; Cys Ser mutant, S genomics consortium, SGC,
transferase; 2.00A {Homo sapiens}
Length = 90
Score = 66.5 bits (163), Expect = 5e-15
Identities = 17/89 (19%), Positives = 33/89 (37%), Gaps = 6/89 (6%)
Query: 39 TFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAAAE--LKRGDIIRKIGDYDS 96
+ + R +G RI GG + PI I + P A + L+ GD + +
Sbjct: 3 EQDIFLWRKET--GFGFRILGGNEPGEPIYIGHIVPLGAADTDGRLRSGDELISVDGTPV 60
Query: 97 RDLRHKDATNFFQSS--DTSISLGIQRNP 123
H+ Q + ++L +++
Sbjct: 61 IGKSHQLVVQLMQQAAKQGHVNLTVRQTR 89
>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, protein binding;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 101
Score = 66.6 bits (163), Expect = 6e-15
Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 5/84 (5%)
Query: 29 SGKPAQPHQNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAAAE-LKRGDI 87
SG + V ++R H G I GG + I ++ V PG+ A E L+ GD
Sbjct: 3 SGSSGEVR----LVSLRRAKAHEGLGFSIRGGSEHGVGIYVSLVEPGSLAEKEGLRVGDQ 58
Query: 88 IRKIGDYDSRDLRHKDATNFFQSS 111
I ++ D + H +A + S
Sbjct: 59 ILRVNDKSLARVTHAEAVKALKGS 82
>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, protein binding;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 128
Score = 67.1 bits (164), Expect = 6e-15
Identities = 27/119 (22%), Positives = 47/119 (39%), Gaps = 5/119 (4%)
Query: 25 PTRKSGKPAQPHQNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAA-AELK 83
R+S + V + + S GL I GG + I IT V PG+ A + LK
Sbjct: 7 GDRRSTLHLLQGGDEKKVNLVLGD-GRSLGLTIRGGAEYGLGIYITGVDPGSEAEGSGLK 65
Query: 84 RGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQR--NPPGEKKAASGSRSVTPLP 140
GD I ++ ++ H +A +SS + L ++ P + ++ +
Sbjct: 66 VGDQILEVNGRSFLNILHDEAVRLLKSS-RHLILTVKDVGRLPHARTTVDETKWIASSS 123
>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ
tandem, alternative splicing, cell junction, cytoplasm;
2.30A {Rattus norvegicus}
Length = 200
Score = 68.2 bits (167), Expect = 1e-14
Identities = 20/95 (21%), Positives = 40/95 (42%), Gaps = 4/95 (4%)
Query: 32 PAQPHQNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAAAE--LKRGDIIR 89
P +T ++K+ + GL ++GG D D ++ + G AA L GD I+
Sbjct: 2 PGSFKGSTVVELMKKEGT--TLGLTVSGGIDKDGKPRVSNLRQGGIAARSDQLDVGDYIK 59
Query: 90 KIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPP 124
+ + RH + + ++ + L ++ P
Sbjct: 60 AVNGINLAKFRHDEIISLLKNVGERVVLEVEYELP 94
Score = 62.8 bits (153), Expect = 1e-12
Identities = 24/106 (22%), Positives = 40/106 (37%), Gaps = 8/106 (7%)
Query: 25 PTRKSGKPAQPHQNTFTVVIKRPNRHHSWGLRIAGGCD----LDSPIVITKVYPGTPAAA 80
S + + T V + + ++G I GG P+VIT V PG PA
Sbjct: 93 LPPVSIQGSSVMFRTVEVTLHKEGN--TFGFVIRGGAHDDRNKSRPVVITCVRPGGPADR 150
Query: 81 E--LKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPP 124
E +K GD + + H +A + + +L I+ +
Sbjct: 151 EGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQCGQEATLLIEYDVS 196
>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing
protein 1; PDZ, E6 binding, tumor suppressor, peptide
binding protein; 2.15A {Mus musculus}
Length = 85
Score = 65.4 bits (160), Expect = 1e-14
Identities = 20/87 (22%), Positives = 37/87 (42%), Gaps = 6/87 (6%)
Query: 39 TFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAAAE--LKRGDIIRKIGDYDS 96
+ +++ +R +G + GG + D + I + PAA + ++ GD+I + D
Sbjct: 1 SIHTKLRKSSR--GFGFTVVGGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCV 58
Query: 97 RDLRHKDATNFFQS--SDTSISLGIQR 121
H FQS S+ L + R
Sbjct: 59 LGHTHAQVVKIFQSIPIGASVDLELCR 85
>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Mus musculus} SCOP: b.36.1.1
Length = 117
Score = 65.5 bits (160), Expect = 2e-14
Identities = 24/103 (23%), Positives = 46/103 (44%), Gaps = 7/103 (6%)
Query: 39 TFTVVIKRPNRHHSWGLRIAGGCD------LDSPIVITKVYPGTPAAAELKRGDIIRKIG 92
+TV +++ + +G+ ++GG D ++ IVI+ V PG PA L+ D + +
Sbjct: 15 QYTVTLQKDS-KRGFGIAVSGGRDNPHFENGETSIVISDVLPGGPADGLLQENDRVVMVN 73
Query: 93 DYDSRDLRHKDATNFFQSSDTSISLGIQRNPPGEKKAASGSRS 135
D+ H A + S ++ ++R + SG S
Sbjct: 74 GTPMEDVLHSFAVQQLRKSGKIAAIVVKRPRKVQVAPLSGPSS 116
>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight
junction protein, protein associated to tight junctions,
PATJ, structural genomics; NMR {Homo sapiens}
Length = 128
Score = 65.5 bits (160), Expect = 3e-14
Identities = 28/111 (25%), Positives = 44/111 (39%), Gaps = 8/111 (7%)
Query: 31 KPAQPHQNTFTVVIKRPNRHHSWGLRIAGGCD---LDSPIVITKVYPGTPAAAE--LKRG 85
+ AQ Q + I+RP+ G + I + V PG+ A + LK
Sbjct: 19 QMAQGRQ-IEYIDIERPS-TGGLGFSVVALRSQNLGKVDIFVKDVQPGSVADRDQRLKEN 76
Query: 86 DIIRKIGDYD-SRDLRHKDATNFFQSSDTSISLGIQRNPPGEKKAASGSRS 135
D I I +++ H+ A Q + S+ L + R P K + SG S
Sbjct: 77 DQILAINHTPLDQNISHQQAIALLQQTTGSLRLIVAREPVHTKSSTSGPSS 127
>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 111
Score = 65.1 bits (159), Expect = 3e-14
Identities = 26/109 (23%), Positives = 44/109 (40%), Gaps = 6/109 (5%)
Query: 29 SGKPAQPHQNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAAAE--LKRGD 86
SG + V + G I GG S +V+ + PG A + L+ GD
Sbjct: 6 SGPETVCWGHVEEVELINDGS--GLGFGIVGGKT--SGVVVRTIVPGGLADRDGRLQTGD 61
Query: 87 IIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPPGEKKAASGSRS 135
I KIG + + + + ++ S+ + + R+P G+ SG S
Sbjct: 62 HILKIGGTNVQGMTSEQVAQVLRNCGNSVRMLVARDPAGDISVTSGPSS 110
>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding
site complex, protein binding; 1.43A {Homo sapiens} PDB:
3nfl_A 2vph_A
Length = 107
Score = 64.8 bits (158), Expect = 3e-14
Identities = 25/96 (26%), Positives = 41/96 (42%), Gaps = 4/96 (4%)
Query: 25 PTRKSGKPAQPHQNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAA---AE 81
P + + PH N + +K + +G + GG D P+++++V PGTPA
Sbjct: 4 PEKPTPNGGIPHDNLVLIRMKPDE-NGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPR 62
Query: 82 LKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISL 117
L GD + I D + H F ++S S
Sbjct: 63 LNEGDQVVLINGRDIAEHTHDQVVLFIKASCERHSG 98
>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic}
Length = 108
Score = 65.1 bits (159), Expect = 3e-14
Identities = 20/105 (19%), Positives = 43/105 (40%), Gaps = 7/105 (6%)
Query: 29 SGKPAQPHQNTFTVVIKRPNRHHSWGLRIAGGCD-----LDSPIVITKVYPGTPAAAE-- 81
G + ++V + R S G+ I+G D + I + + PG+ AA +
Sbjct: 3 HGYSDASGFSLYSVELFREKDTSSLGISISGMRDQSTTGEATGIYVKSLIPGSAAALDGR 62
Query: 82 LKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPPGE 126
++ D I ++ D + + + D +++ + L + R P
Sbjct: 63 IEPNDKILRVDDVNVQGMAQSDVVEVLRNAGNPVRLLLIRRLPLL 107
>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3,
DLG3-human presynaptic protein, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.36.1.1
Length = 113
Score = 65.1 bits (159), Expect = 3e-14
Identities = 25/109 (22%), Positives = 46/109 (42%), Gaps = 5/109 (4%)
Query: 29 SGKPAQPHQNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAAAE--LKRGD 86
SG+P + +++ + + G I GG D I ++ + G PA L+RGD
Sbjct: 6 SGRPGGDAREPRKIILHKGST--GLGFNIVGGED-GEGIFVSFILAGGPADLSGELRRGD 62
Query: 87 IIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPPGEKKAASGSRS 135
I + + R+ H+ A + + S+++ Q P + S S
Sbjct: 63 RILSVNGVNLRNATHEQAAAALKRAGQSVTIVAQYRPEEYSRFESSGPS 111
>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high
affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB:
2h2c_A 2h3m_A 2rrm_A
Length = 107
Score = 64.7 bits (158), Expect = 4e-14
Identities = 27/113 (23%), Positives = 45/113 (39%), Gaps = 13/113 (11%)
Query: 33 AQPHQNTFTVVIKRPNRHHSWGLRIAGGCD------LDSPIVITKVYPGTPAAAELKRGD 86
+ TV + R +G+ I+GG D ++ IVI+ V G PA +L+ D
Sbjct: 2 SHMIWEQHTVTLHRAPGF-GFGIAISGGRDNPHFQSGETSIVISDVLKGGPAEGQLQEND 60
Query: 87 IIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPPGEKKAASGSRSVTPL 139
+ + ++ H A + S + + I+R K G R T L
Sbjct: 61 RVAMVNGVSMDNVEHAFAVQQLRKSGKNAKITIRR------KKGGGWRRTTYL 107
>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 124
Score = 64.8 bits (158), Expect = 6e-14
Identities = 26/122 (21%), Positives = 51/122 (41%), Gaps = 5/122 (4%)
Query: 17 TSTNQALIPTRKSGKPAQPHQNTFTVVIKRPNRHHSWGLRIAGGCDL-DSPIVITKVYPG 75
S+ A + + A + +++ GL +AG D I + + P
Sbjct: 4 GSSGDAFTDQKIRQRYADLPGELHIIELEKDKN--GLGLSLAGNKDRSRMSIFVVGINPE 61
Query: 76 TPAAAE--LKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPPGEKKAASGS 133
PAAA+ ++ GD + +I + H++A+ +++ + + L RN + ASG
Sbjct: 62 GPAAADGRMRIGDELLEINNQILYGRSHQNASAIIKTAPSKVKLVFIRNEDAVNQMASGP 121
Query: 134 RS 135
S
Sbjct: 122 SS 123
>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 116
Score = 64.0 bits (156), Expect = 9e-14
Identities = 30/107 (28%), Positives = 46/107 (42%), Gaps = 6/107 (5%)
Query: 32 PAQPHQNTFTVVIKRPNRHHSWGLRIAGGCD-LDSPIVITKVYPGTPAAAE--LKRGDII 88
P P Q + I + GL I GG D + IVI +VY AA + L GD I
Sbjct: 12 PIVPGQ-EMIIEISKGRS--GLGLSIVGGKDTPLNAIVIHEVYEEGAAARDGRLWAGDQI 68
Query: 89 RKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPPGEKKAASGSRS 135
++ D R+ H++A + + + L + R+ + SG S
Sbjct: 69 LEVNGVDLRNSSHEEAITALRQTPQKVRLVVYRDEAHYRDEESGPSS 115
>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell
adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A*
1t2m_A 2ain_A
Length = 106
Score = 63.5 bits (155), Expect = 9e-14
Identities = 17/102 (16%), Positives = 32/102 (31%), Gaps = 8/102 (7%)
Query: 32 PAQPHQNTFTVVIKRPNRHHSWGLRIAGGCDL---DSPIVITKVYPGTPAAAE--LKRGD 86
TV +K+ N GL I I + V G A + L GD
Sbjct: 5 SDHKEPEIITVTLKKQN---GMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGD 61
Query: 87 IIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPPGEKK 128
+ + L + A + + ++L + + ++
Sbjct: 62 QLLSVDGRSLVGLSQERAAELMTRTSSVVTLEVAKQGAIRRE 103
>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled
coil, deafness, hearing, non-syndromic deafness,
polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A
Length = 192
Score = 65.7 bits (160), Expect = 1e-13
Identities = 27/130 (20%), Positives = 50/130 (38%), Gaps = 7/130 (5%)
Query: 9 NSKSLDALTSTNQALIPTRKSGKPAQPH----QNTFTVVIKRPNRHHSWGLRIAGGCDLD 64
N S L + LIP + + Q + V + R GL + GG +
Sbjct: 51 NEPSRLPLFDAIRPLIPLKHQVEYDQLTPRRSRKLKEVRLDRL-HPEGLGLSVRGGLEFG 109
Query: 65 SPIVITKVYPGTPAAAE-LKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNP 123
+ I+ + G A + L+ GD I +I Y H++ N ++ T +S+ ++
Sbjct: 110 CGLFISHLIKGGQADSVGLQVGDEIVRINGYSISSCTHEEVINLIRTEKT-VSIKVRHIG 168
Query: 124 PGEKKAASGS 133
K++
Sbjct: 169 LIPVKSSPDE 178
>2opg_A Multiple PDZ domain protein; structural protein, structural
genomics, structural genomics consortium, SGC; 1.50A
{Homo sapiens}
Length = 98
Score = 63.1 bits (154), Expect = 1e-13
Identities = 26/91 (28%), Positives = 39/91 (42%), Gaps = 5/91 (5%)
Query: 40 FTVVIKRPNRHHSWGLRIAGGCD-LDSPIVITKVYPGTPAAAE--LKRGDIIRKIGDYDS 96
T+ I + GL I GG D L I+I +VY A + L GD I ++ D
Sbjct: 6 TTIEISKGRT--GLGLSIVGGSDTLLGAIIIHEVYEEGAACKDGRLWAGDQILEVNGIDL 63
Query: 97 RDLRHKDATNFFQSSDTSISLGIQRNPPGEK 127
R H +A N + + + L + R+ K
Sbjct: 64 RKATHDEAINVLRQTPQRVRLTLYRDEAPYK 94
>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem
repeats, scaffold protein, protein binding; NMR {Rattus
norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A
Length = 196
Score = 65.2 bits (159), Expect = 2e-13
Identities = 19/96 (19%), Positives = 39/96 (40%), Gaps = 7/96 (7%)
Query: 35 PHQNTFTVVIKRPNRHHSWGLRIAGGCD----LDSPIVITKVYPGTPAAAE--LKRGDII 88
H T VV+ + +G+++ G L SP +I+ + +PA L+ GD +
Sbjct: 3 VHTETTEVVLTA-DPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRV 61
Query: 89 RKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPP 124
I + D ++A + S + + ++
Sbjct: 62 MAINGIPTEDSTFEEANQLLRDSSITSKVTLEIEFD 97
Score = 56.7 bits (137), Expect = 2e-10
Identities = 21/105 (20%), Positives = 40/105 (38%), Gaps = 5/105 (4%)
Query: 23 LIPTRKSGKPAQPHQNTFTVVIKRPNRHHSWGLRIAGGCD--LDSPIVITKVYPGTPAAA 80
L + P TF V + + + G+ I+ P+VI+ + G+ A
Sbjct: 92 LEIEFDVAESVIPSSGTFHVKLPKKHSV-ELGITISSPSSRKPGDPLVISDIKKGSVAHR 150
Query: 81 E--LKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNP 123
L+ GD + I + +DA Q + + L I+++
Sbjct: 151 TGTLELGDKLLAIDNIRLDSCSMEDAVQILQQCEDLVKLKIRKDE 195
>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural
genomics, structura genomics consortium, SGC, signaling
protein; 1.12A {Homo sapiens} PDB: 2pku_A
Length = 114
Score = 62.5 bits (152), Expect = 3e-13
Identities = 15/90 (16%), Positives = 33/90 (36%), Gaps = 3/90 (3%)
Query: 37 QNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAAAE--LKRGDIIRKIGDY 94
V +++ + + G+ I GG + I +V+ TPAA + + GD I +
Sbjct: 23 MVPGKVTLQK-DAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGR 81
Query: 95 DSRDLRHKDATNFFQSSDTSISLGIQRNPP 124
+ + Q +++ +
Sbjct: 82 SIKGKTKVEVAKMIQEVKGEVTIHYNKLQY 111
>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide
binding protein; 1.54A {Rattus norvegicus} SCOP:
b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A
Length = 119
Score = 62.4 bits (152), Expect = 4e-13
Identities = 27/113 (23%), Positives = 47/113 (41%), Gaps = 9/113 (7%)
Query: 25 PTRKSGKPAQPHQNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAAAE--L 82
+ P +P +VI R + G I GG D I I+ + G PA L
Sbjct: 5 FLGEEDIPREP----RRIVIHRGST--GLGFNIVGGED-GEGIFISFILAGGPADLSGEL 57
Query: 83 KRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPPGEKKAASGSRS 135
++GD I + D R+ H+ A +++ ++++ Q P + + SR
Sbjct: 58 RKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPEEYSRFEANSRV 110
>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain, structural
genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 123
Score = 62.4 bits (152), Expect = 4e-13
Identities = 27/108 (25%), Positives = 44/108 (40%), Gaps = 6/108 (5%)
Query: 32 PAQPHQNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAAAE--LKRGDIIR 89
+Q + +K+ N +G I GG + D + + V P PAA + ++ GD+I
Sbjct: 13 ASQLKGTFLSTTLKKSNM--GFGFTIIGGDEPDEFLQVKSVIPDGPAAQDGKMETGDVIV 70
Query: 90 KIGDYDSRDLRHKDATNFFQS--SDTSISLGIQRNPPGEKKAASGSRS 135
I + H D FQS S++L + R P + S
Sbjct: 71 YINEVCVLGHTHADVVKLFQSVPIGQSVNLVLCRGYPLPFDPEDPANS 118
>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain, structural
genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 114
Score = 62.1 bits (151), Expect = 5e-13
Identities = 27/113 (23%), Positives = 43/113 (38%), Gaps = 12/113 (10%)
Query: 32 PAQPHQNTFTVVIKRPNRHHSWGLRIAGG-------CDLDSPIVITKVYPGTPAA--AEL 82
+ T VVI R + +G I + P I ++ G+PA A+L
Sbjct: 4 GSSGSLQTSDVVIHR-KENEGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAKL 62
Query: 83 KRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPPGEKKAASGSRS 135
K GD I + ++ H D + + S++L I E + SG S
Sbjct: 63 KVGDRILAVNGQSIINMPHADIVKLIKDAGLSVTLRIIP--QEELNSPSGPSS 113
>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two
alpha-helices, protein binding; NMR {Rattus norvegicus}
SCOP: b.36.1.1
Length = 91
Score = 61.2 bits (149), Expect = 6e-13
Identities = 20/96 (20%), Positives = 35/96 (36%), Gaps = 6/96 (6%)
Query: 29 SGKPAQPHQNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAA-AELKRGDI 87
S P + H V + + + +G +A G + + + + P P LK D
Sbjct: 1 SPTPVELH----KVTLYKDSGMEDFGFSVADGLL-EKGVYVKNIRPAGPGDLGGLKPYDR 55
Query: 88 IRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNP 123
+ ++ +RD S + L I RNP
Sbjct: 56 LLQVNHVRTRDFDCCLVVPLIAESGNKLDLVISRNP 91
>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A
{Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A
Length = 97
Score = 61.2 bits (149), Expect = 6e-13
Identities = 20/89 (22%), Positives = 38/89 (42%), Gaps = 4/89 (4%)
Query: 38 NTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAAAE--LKRGDIIRKIGDYD 95
+TV +KR G+ I+G + PI+I+ + G A + GD I I
Sbjct: 5 IIYTVELKRYGG--PLGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSS 62
Query: 96 SRDLRHKDATNFFQSSDTSISLGIQRNPP 124
+ +A + Q + +++L I++
Sbjct: 63 LKGKPLSEAIHLLQMAGETVTLKIKKQTD 91
>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.36.1.1
Length = 117
Score = 61.7 bits (150), Expect = 7e-13
Identities = 19/112 (16%), Positives = 40/112 (35%), Gaps = 5/112 (4%)
Query: 25 PTRKSGKPAQPHQNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAAAE-LK 83
+ K + V +++ + G+ I G I ++KV G+ A L+
Sbjct: 6 SGGERRKDRPYVEEPRHVKVQKGSE--PLGISIVSGEK--GGIYVSKVTVGSIAHQAGLE 61
Query: 84 RGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPPGEKKAASGSRS 135
GD + + + R + A +I++ Q NP + ++
Sbjct: 62 YGDQLLEFNGINLRSATEQQARLIIGQQCDTITILAQYNPHVHQLSSHSRSG 113
>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic
domain associated protein, structural genomics; NMR
{Homo sapiens} SCOP: b.36.1.1
Length = 107
Score = 61.3 bits (149), Expect = 7e-13
Identities = 26/111 (23%), Positives = 41/111 (36%), Gaps = 16/111 (14%)
Query: 29 SGKPAQPHQNTFTVVIKRPNRHHSWGLRIAGGCDL--------DSPIVITKVYPGTPAAA 80
SG + T+V+ R + S G I GG I ++K+ PAA
Sbjct: 3 SGSSGKS----LTLVLHRDSG--SLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAK 56
Query: 81 E--LKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPPGEKKA 129
E L+ D I ++ D H A F+++ I + + R G
Sbjct: 57 EGGLQIHDRIIEVNGRDLSRATHDQAVEAFKTAKEPIVVQVLRRTSGPSSG 107
>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide
binding protein; NMR {Drosophila melanogaster}
Length = 106
Score = 60.9 bits (148), Expect = 9e-13
Identities = 24/104 (23%), Positives = 43/104 (41%), Gaps = 12/104 (11%)
Query: 38 NTFTV-VIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAAA--ELKRGDIIRKIGDY 94
F V ++K+ + GL ++ + I + G +L+RGDII K
Sbjct: 2 EKFNVDLMKKAGK--ELGLSLSPN---EIGCTIADLIQGQYPEIDSKLQRGDIITKFNGD 56
Query: 95 DSRDLRHKDATNFFQSSDTSISLGIQRNPPGEKKAASGSRSVTP 138
L + F+ ++ +S+ + R PG + GS S+ P
Sbjct: 57 ALEGLPFQVCYALFKGANGKVSMEVTRPKPG----SGGSGSLVP 96
>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein;
1.80A {Drosophila melanogaster} SCOP: b.36.1.1
Length = 98
Score = 60.8 bits (148), Expect = 1e-12
Identities = 22/93 (23%), Positives = 36/93 (38%), Gaps = 9/93 (9%)
Query: 37 QNTFTVVIKRPNRHHSWGLRIAGGCD------LDSPIVITKVYPGTPAAA--ELKRGDII 88
+ V + + S+G+ I G + I I + P +PA LK GD I
Sbjct: 4 ELIHMVTLDKTG-KKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRI 62
Query: 89 RKIGDYDSRDLRHKDATNFFQSSDTSISLGIQR 121
+ D R+ + + + +D I L IQ
Sbjct: 63 LSLNGKDVRNSTEQAVIDLIKEADFKIELEIQT 95
>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90,
GLUR6, cell juncti membrane, lipoprotein, membrane,
palmitate, phosphoprotein; 2.05A {Rattus norvegicus}
PDB: 3zrt_A 2ka9_A
Length = 196
Score = 62.8 bits (153), Expect = 1e-12
Identities = 27/97 (27%), Positives = 42/97 (43%), Gaps = 9/97 (9%)
Query: 35 PHQNTFTVVIKRPNRHHSWGLRIAGGCD-----LDSPIVITKVYPGTPAAAE--LKRGDI 87
+ ++R N G IAGG D D I ITK+ PG AA + L+ D
Sbjct: 2 GSMEYEEITLERGNS--GLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDS 59
Query: 88 IRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPP 124
I + + D R++ H A + + + + L + R P
Sbjct: 60 ILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRRKP 96
Score = 56.7 bits (137), Expect = 2e-10
Identities = 28/134 (20%), Positives = 51/134 (38%), Gaps = 14/134 (10%)
Query: 9 NSKSLDALTSTNQALIPTRKSGKPAQ------PHQNTFTVVIKRPNRHHSWGLRIAGGCD 62
N + +T + A+ +++G + + IK G IAGG
Sbjct: 64 NEVDVREVT-HSAAVEALKEAGSIVRLYVMRRKPPAEKVMEIKLIKGPKGLGFSIAGGVG 122
Query: 63 -----LDSPIVITKVYPGTPAAAE--LKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSI 115
D+ I +TK+ G A + L+ GD I + D+ H+DA +++ +
Sbjct: 123 NQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNTYDVV 182
Query: 116 SLGIQRNPPGEKKA 129
L + + E A
Sbjct: 183 YLKVAKPSNAETMA 196
>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion;
1.99A {Homo sapiens} PDB: 3shu_A
Length = 124
Score = 61.0 bits (148), Expect = 1e-12
Identities = 24/125 (19%), Positives = 52/125 (41%), Gaps = 13/125 (10%)
Query: 7 NTNSKSLDALTSTNQALIPTRKSGKPAQPHQNTFTVVIKRPNRHHSWGLRIAGGCDLDSP 66
+++ + T +P ++ + + + S GLR+AGG D+
Sbjct: 3 SSHHHHHHSSGGTENLYFQGHMILRP--------SMKLVKFRKGDSVGLRLAGGNDV--G 52
Query: 67 IVITKVYPGTPAAAE-LKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTS--ISLGIQRNP 123
I + V +PAA E L+ GD I ++ + D ++ ++A F +++ Q+
Sbjct: 53 IFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQKKK 112
Query: 124 PGEKK 128
++
Sbjct: 113 DVYRR 117
>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural
genomics, riken structural genomics/proteomics
initiative, unknown function; NMR {Homo sapiens} SCOP:
b.36.1.1
Length = 110
Score = 60.4 bits (147), Expect = 1e-12
Identities = 20/102 (19%), Positives = 38/102 (37%), Gaps = 7/102 (6%)
Query: 32 PAQPHQNTFTVVIKRPNRHHSWGLRIAGGCD---LDSPIVITKVYPGTPAAAE--LKRGD 86
+ FTV ++R G+ + G + I + PG+PAAA+ L GD
Sbjct: 2 SSGSSGYVFTVELERGPS--GLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGD 59
Query: 87 IIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPPGEKK 128
I ++ L + A + + + + ++ K
Sbjct: 60 RILEVNGSSLLGLGYLRAVDLIRHGGKKMRFLVAKSDVETAK 101
>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor
(LCF), structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: b.36.1.2
Length = 119
Score = 60.9 bits (148), Expect = 2e-12
Identities = 21/114 (18%), Positives = 39/114 (34%), Gaps = 5/114 (4%)
Query: 25 PTRKSGKPAQPHQNTFTVVIKRPNRHHSWGLRIAGGCDL-DSPIVITKVYPGTPAAAE-- 81
Q T++ K G +AGG DL + I + +V+P A+ E
Sbjct: 3 SGSSGATLKQLDGIHVTILHKEEG--AGLGFSLAGGADLENKVITVHRVFPNGLASQEGT 60
Query: 82 LKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPPGEKKAASGSRS 135
+++G+ + I + H DA + + I + + S
Sbjct: 61 IQKGNEVLSINGKSLKGTTHHDALAILRQAREPRQAVIVTRKLTPEAMPDLNSS 114
>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction,
structural genom structural genomics consortium, SGC,
signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A
3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A
Length = 102
Score = 60.4 bits (147), Expect = 2e-12
Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 9/99 (9%)
Query: 39 TFTVVIKRPNRHHSWGLRIAGGCD-----LDSPIVITKVYPGTPAAAE--LKRGDIIRKI 91
+V++R N G IAGG D D I ITK+ PG AA + L D + ++
Sbjct: 5 YEEIVLERGN--SGLGFSIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDCVLRV 62
Query: 92 GDYDSRDLRHKDATNFFQSSDTSISLGIQRNPPGEKKAA 130
+ D ++ H A + + + L ++R P ++ +
Sbjct: 63 NEVDVSEVVHSRAVEALKEAGPVVRLVVRRRQPPPEETS 101
>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.36.1.1
Length = 105
Score = 60.4 bits (147), Expect = 2e-12
Identities = 22/99 (22%), Positives = 38/99 (38%), Gaps = 10/99 (10%)
Query: 34 QPHQNTFTVVIKRPNRHHSWGLRIAGGCDL------DSPIVITKVYPGTPAAAE--LKRG 85
+ R R G IAGG D+ I ++++ G A L+ G
Sbjct: 3 SGSSGRHVACLARSER--GLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVG 60
Query: 86 DIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPP 124
D + I D + RH A + ++ +I+L ++R
Sbjct: 61 DRVLSINGVDVTEARHDHAVSLLTAASPTIALLLEREAG 99
>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1,
riken structural genomics/proteomics initiative, RSGI,
protein binding; NMR {Mus musculus} SCOP: b.36.1.1
Length = 118
Score = 60.5 bits (147), Expect = 2e-12
Identities = 24/108 (22%), Positives = 36/108 (33%), Gaps = 9/108 (8%)
Query: 26 TRKSGKPAQPHQNTFTVVIKRPNRHHSWGLRIAGGCD-LDSPIVITKVYPGTPAAAE--L 82
P Q ++ + S L + GG D +V++ VY G A +
Sbjct: 5 AATMFSPEQIAGKDVRLLRIKKE--GSLDLALEGGVDSPVGKVVVSAVYEGGAAERHGGV 62
Query: 83 KRGDIIRKIGDYDSRDLRHKDATNFFQSSDTS----ISLGIQRNPPGE 126
+GD I I D +A Q + I L + PP E
Sbjct: 63 VKGDEIMAINGKIVTDYTLAEAEAALQKAWNQGGDWIDLVVAVCPPKE 110
>3i4w_A Disks large homolog 4; alpha and beta protein, alternative
splicing, cell junction, cell membrane, lipoprotein,
membrane, palmitate, phosphoprotein; 1.35A {Homo
sapiens} PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A
Length = 104
Score = 60.0 bits (146), Expect = 2e-12
Identities = 24/96 (25%), Positives = 43/96 (44%), Gaps = 6/96 (6%)
Query: 30 GKPAQPHQNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAAAE--LKRGDI 87
G+ P + +VI R + G I GG + I I+ + G PA L++GD
Sbjct: 4 GEEDIPRE-PRRIVIHRGST--GLGFNIVGG-EXGEGIFISFILAGGPADLSGELRKGDQ 59
Query: 88 IRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNP 123
I + D R+ H+ A +++ ++++ Q P
Sbjct: 60 ILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKP 95
>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.36.1.1
Length = 110
Score = 60.1 bits (146), Expect = 2e-12
Identities = 25/103 (24%), Positives = 45/103 (43%), Gaps = 9/103 (8%)
Query: 29 SGKPAQPHQNTFTVVIKRPNRHHSWGLRIAGGCD------LDSPIVITKVYPGTPAAAE- 81
SG+PA+ + T+ I R G+ IAGG D I I++V PAA
Sbjct: 6 SGEPARIEEEELTLTILRQTG--GLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAG 63
Query: 82 LKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPP 124
++ GD + ++ + H +A + + T++ + + R
Sbjct: 64 VRVGDKLLEVNGVALQGAEHHEAVEALRGAGTAVQMRVWRESG 106
>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding
protein, membrane, sensory transduction, vision; 1.55A
{Drosophila melanogaster} PDB: 2qkt_A 2qku_A
Length = 96
Score = 59.2 bits (144), Expect = 3e-12
Identities = 19/91 (20%), Positives = 36/91 (39%), Gaps = 8/91 (8%)
Query: 39 TFTVVI-KRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAAA--ELKRGDIIRKIGDYD 95
F V + K+ + GL ++ + I + G +L+RGDII K
Sbjct: 9 KFNVDLMKKAGK--ELGLSLSPN---EIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDA 63
Query: 96 SRDLRHKDATNFFQSSDTSISLGIQRNPPGE 126
L + + F+ ++ +S+ + R P
Sbjct: 64 LEGLPFQVSYALFKGANGKVSMEVTRPKPAA 94
>2fne_A Multiple PDZ domain protein; structural protein, structural
genomics, SGC, structural genomics consortium, unknown
function; 1.83A {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 59.7 bits (145), Expect = 3e-12
Identities = 20/98 (20%), Positives = 39/98 (39%), Gaps = 7/98 (7%)
Query: 32 PAQPHQNTFTVVIKRPNRHHSWGLRIAGGCD---LDSPIVITKVYPGTPAAAE--LKRGD 86
Q ++ ++R G I GG D PI + V+ A+ + LKRGD
Sbjct: 19 YFQSMPQCKSITLERGPD--GLGFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGRLKRGD 76
Query: 87 IIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPP 124
I + + H++A + + +++L + +
Sbjct: 77 QIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMVLSSDE 114
>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 108
Score = 59.7 bits (145), Expect = 3e-12
Identities = 21/105 (20%), Positives = 35/105 (33%), Gaps = 9/105 (8%)
Query: 26 TRKSGKPAQPHQNTFTVVIKRPNRHHSWGLRIAGGCD----LDSPIVITKVYPGTPAAAE 81
+ SG+ A V + + + G I D S IVI + A
Sbjct: 3 SGSSGELALWSPEVKIVELVKDCK--GLGFSILDYQDPLDPTRSVIVIRSLVADGVAERS 60
Query: 82 --LKRGDIIRKIGDYDSRDLRHKDATNFFQSS-DTSISLGIQRNP 123
L GD + + +Y + +A ++ + LGI P
Sbjct: 61 GGLLPGDRLVSVNEYCLDNTSLAEAVEILKAVPPGLVHLGICSGP 105
>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog;
PDZ domain, cellular signaling, structural genomics; NMR
{Mus musculus} SCOP: b.36.1.1
Length = 122
Score = 59.9 bits (145), Expect = 4e-12
Identities = 26/113 (23%), Positives = 48/113 (42%), Gaps = 9/113 (7%)
Query: 29 SGKPAQPHQNTFTVVIKRPNRHHSWGLRIAGGCD----LDSPIVITKVYPGTPAAAE--L 82
SG H T VV+ + +G+++ G L SP +I+ + +PA L
Sbjct: 6 SGAGQVVHTETTEVVLTA-DPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVL 64
Query: 83 KRGDIIRKIGDYDSRDLRHKDATNFFQSSDTS--ISLGIQRNPPGEKKAASGS 133
+ GD + I + D ++A + S + ++L I+ + +SGS
Sbjct: 65 QIGDRVMAINGIPTEDSTFEEANQLLRDSSITSKVTLEIEFDVAESVIPSSGS 117
>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune
enteropathy-related antigen AIE-75 ,antigen
NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens}
SCOP: b.36.1.1 PDB: 2kbs_A
Length = 114
Score = 59.4 bits (144), Expect = 4e-12
Identities = 31/110 (28%), Positives = 43/110 (39%), Gaps = 3/110 (2%)
Query: 28 KSGKPAQPHQNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAAAE-LKRGD 86
SG P V I G I+ G I I+ V PG+ +A L+ GD
Sbjct: 5 SSGSPGNRENKEKKVFISLV-GSRGLGCSISSGPIQKPGIFISHVKPGSLSAEVGLEIGD 63
Query: 87 IIRKIGDYDSRDLRHKDATNFFQSS-DTSISLGIQRNPPGEKKAASGSRS 135
I ++ D +L HK+A N +SS +IS+ SG S
Sbjct: 64 QIVEVNGVDFSNLDHKEAVNVLKSSRSLTISIVAAAGRELFMTDRSGPSS 113
>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, signaling protein; NMR {Mus musculus}
SCOP: b.36.1.1
Length = 100
Score = 59.0 bits (143), Expect = 4e-12
Identities = 20/97 (20%), Positives = 39/97 (40%), Gaps = 7/97 (7%)
Query: 29 SGKPAQPHQNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAA-AELKRGDI 87
SG+ + + I+R +G I DSP+ + V G PA A L++ D
Sbjct: 6 SGEGDPENGEKLQITIRRGK--DGFGFTICC----DSPVRVQAVDSGGPAERAGLQQLDT 59
Query: 88 IRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPP 124
+ ++ + + + + +S + I L + R
Sbjct: 60 VLQLNERPVEHWKCVELAHEIRSCPSEIILLVWRVSG 96
>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane
protein 25, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 120
Score = 59.8 bits (145), Expect = 4e-12
Identities = 27/104 (25%), Positives = 47/104 (45%), Gaps = 9/104 (8%)
Query: 39 TFTVVIKRPNRHHSWGLRIAGGCD-----LDSPIVITKVYPGTPAAAE--LKRGDIIRKI 91
+ + R G I GG D DS I ++++ AA + L+ GD I +
Sbjct: 18 EEEINLTRGP--SGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSV 75
Query: 92 GDYDSRDLRHKDATNFFQSSDTSISLGIQRNPPGEKKAASGSRS 135
D ++L H+DA + F+++ ++SL +Q + SG S
Sbjct: 76 NGQDLKNLLHQDAVDLFRNAGYAVSLRVQHRLQVQNGPISGPSS 119
>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal
peptide complex, high affnity ligand, signaling protein;
NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A
Length = 103
Score = 59.0 bits (143), Expect = 5e-12
Identities = 23/104 (22%), Positives = 41/104 (39%), Gaps = 11/104 (10%)
Query: 29 SGKPAQPHQNTFTVVIKRPNRHHSWGLRIAGGCD--------LDSPIVITKVYPGTPAAA 80
S + + V +++ G I+GG D I +T+V P PA+
Sbjct: 2 SHMGHELAKQEIRVRVEK---DPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK 58
Query: 81 ELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPP 124
L+ GD I + Y ++ H A + ++ ++ L I R
Sbjct: 59 LLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVREVS 102
>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics,
alternative splicing, cell cycle, cell division, cell
junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A
Length = 111
Score = 58.9 bits (143), Expect = 6e-12
Identities = 16/94 (17%), Positives = 33/94 (35%), Gaps = 9/94 (9%)
Query: 39 TFTVVIKRPNRHHSWGLRIAGGCD---LDSPIVITKVYPGTPAAAE--LKRGDIIRKIGD 93
+ +K+ G I +PI + + P A + LK GD + ++
Sbjct: 12 RLNIQLKKGTE--GLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNG 69
Query: 94 YDSRDLRHKDATNFFQSSDTS--ISLGIQRNPPG 125
D ++ + +S+ +SL + R
Sbjct: 70 VDLAGKSQEEVVSLLRSTKMEGTVSLLVFRQEEA 103
>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission,
protein binding; NMR {Rattus norvegicus}
Length = 113
Score = 58.9 bits (143), Expect = 6e-12
Identities = 17/100 (17%), Positives = 37/100 (37%), Gaps = 10/100 (10%)
Query: 36 HQNTFTVVIKRPNRHHSWGLRIAGGCDL------DSPIVITKVYPGTPAAAE--LKRGDI 87
H F V +++ + G+ I G I + V G A + ++ D+
Sbjct: 2 HMELFPVELEKDSE--GLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDL 59
Query: 88 IRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPPGEK 127
+ ++ + A + +++ + I R PGE+
Sbjct: 60 LVEVDGTSLVGVTQSFAASVLRNTKGRVRFMIGRERPGEQ 99
>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane,
mitochondria distribution, PDZ, membrane, scaffold,
mitochondrion, membrane protein; 1.35A {Homo sapiens}
PDB: 2jin_A
Length = 101
Score = 58.5 bits (142), Expect = 7e-12
Identities = 24/94 (25%), Positives = 43/94 (45%), Gaps = 9/94 (9%)
Query: 39 TFTVVIKRPNRHHSWGLRIAGGCD-----LDSPIVITKVYPGTPAAAE--LKRGDIIRKI 91
+ + R G I GG D DS I ++++ AA + L+ GD I +
Sbjct: 8 EEEINLTRGP--SGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSV 65
Query: 92 GDYDSRDLRHKDATNFFQSSDTSISLGIQRNPPG 125
D ++L H+DA + F+++ ++SL +Q
Sbjct: 66 NGQDLKNLLHQDAVDLFRNAGYAVSLRVQHRLES 99
>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus
interaction, structural genomics consortium,
synaptosome, tight junction; 1.7A {Homo sapiens} PDB:
2iwp_A
Length = 120
Score = 58.9 bits (143), Expect = 8e-12
Identities = 26/97 (26%), Positives = 39/97 (40%), Gaps = 6/97 (6%)
Query: 35 PHQNTFTVVIKRPNRHHSWGLRIAGGCD---LDSPIVITKVYPGTPAAAE--LKRGDIIR 89
TV +K+ S G+ IAGG D PI I ++P AA L+ GD I
Sbjct: 21 QSMGLRTVEMKK-GPTDSLGISIAGGVGSPLGDVPIFIAMMHPTGVAAQTQKLRVGDRIV 79
Query: 90 KIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPPGE 126
I + + H A N +++ SI + +
Sbjct: 80 TICGTSTEGMTHTQAVNLLKNASGSIEMQVVAGGDVS 116
>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural
genomics, structural genomics consortium, SGC,
metal-binding; 1.75A {Homo sapiens}
Length = 118
Score = 58.6 bits (142), Expect = 1e-11
Identities = 22/91 (24%), Positives = 39/91 (42%), Gaps = 6/91 (6%)
Query: 40 FTVVIKRPNRHHSWGLRIAGGCD---LDSPIVITKVYPGTPAAAE--LKRGDIIRKIGDY 94
V I++ S G+ +AGG D PI + V PG + + +K GDI+ +
Sbjct: 26 KVVNIQKDP-GESLGMTVAGGASHREWDLPIYVISVEPGGVISRDGRIKTGDILLNVDGV 84
Query: 95 DSRDLRHKDATNFFQSSDTSISLGIQRNPPG 125
+ ++ +A + + +SI L G
Sbjct: 85 ELTEVSRSEAVALLKRTSSSIVLKALEVKEG 115
>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation,
leucine-rich repeat, alternative splicing, cytoplasm,
circletail, coiled coil; 1.30A {Homo sapiens}
Length = 97
Score = 57.3 bits (139), Expect = 2e-11
Identities = 21/93 (22%), Positives = 38/93 (40%), Gaps = 9/93 (9%)
Query: 39 TFTVVIKRPNRHHSWGLRIAGGCD------LDSPIVITKVYPGTPAAAE-LKRGDIIRKI 91
T+ I R G+ IAGG D I I++V PAA ++ GD + ++
Sbjct: 4 ELTLTILRQTG--GLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAGVRVGDKLLEV 61
Query: 92 GDYDSRDLRHKDATNFFQSSDTSISLGIQRNPP 124
+ H +A + + T++ + + R
Sbjct: 62 NGVALQGAEHHEAVEALRGAGTAVQMRVWRERE 94
>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker,
structural genomics, struc genomics consortium, SGC,
structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 57.8 bits (140), Expect = 2e-11
Identities = 23/96 (23%), Positives = 34/96 (35%), Gaps = 12/96 (12%)
Query: 40 FTVVIKRPNRHHSWGLRIAGGCDL---------DSPIVITKVYPGTPAAAE--LKRGDII 88
V + R S G+ I GG + I I V +PA LK GD I
Sbjct: 6 RRVELWR-EPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRI 64
Query: 89 RKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPP 124
++ D RD H+ A + + + +Q
Sbjct: 65 VEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSIIS 100
>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex,
erbin., signaling protein; 1.25A {Homo sapiens} SCOP:
b.36.1.1 PDB: 1mfl_A
Length = 95
Score = 57.4 bits (139), Expect = 2e-11
Identities = 22/94 (23%), Positives = 38/94 (40%), Gaps = 11/94 (11%)
Query: 39 TFTVVIKRPNRHHSWGLRIAGGCD--------LDSPIVITKVYPGTPAAAELKRGDIIRK 90
V +++ G I+GG D I +T+V P PA+ L+ GD I +
Sbjct: 4 EIRVRVEKDP---ELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASKLLQPGDKIIQ 60
Query: 91 IGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPP 124
Y ++ H A + ++ ++ L I R
Sbjct: 61 ANGYSFINIEHGQAVSLLKTFQNTVELIIVREVS 94
>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 57.9 bits (140), Expect = 2e-11
Identities = 16/108 (14%), Positives = 34/108 (31%), Gaps = 9/108 (8%)
Query: 26 TRKSGKPAQPHQ--NTFTVVIKRPNRHHSWGLRIAGGCDL-----DSPIVITKVYPGTPA 78
+ SG PH + G+RI GG ++ + I K+ PG A
Sbjct: 3 SGSSGHYIFPHARIKITRDSKDHTVSGNGLGIRIVGGKEIPGHSGEIGAYIAKILPGGSA 62
Query: 79 AA--ELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPP 124
+L G + + +++ + + ++ +
Sbjct: 63 EQTGKLMEGMQVLEWNGIPLTSKTYEEVQSIISQQSGEAEICVRLDLN 110
>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor,
PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2
Length = 130
Score = 58.3 bits (141), Expect = 2e-11
Identities = 27/132 (20%), Positives = 56/132 (42%), Gaps = 12/132 (9%)
Query: 10 SKSLDALTSTNQALIPTRKSGKPAQPHQNTFTVVIKRPNRHHSWGLRIAGGCDL---DSP 66
+ S D+ S + A + +S A TV +++ + G + GG D P
Sbjct: 5 NSSTDSAASASAASDVSVESTAEATV----CTVTLEKMSA--GLGFSLEGGKGSLHGDKP 58
Query: 67 IVITKVYPGTPAAAE--LKRGDIIRKIGDYDSRDLRHKDATNFFQSS-DTSISLGIQRNP 123
+ I +++ G + ++ GD I ++G + L +A N ++ D +++ I+R
Sbjct: 59 LTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKALPDGPVTIVIRRKS 118
Query: 124 PGEKKAASGSRS 135
K+ + S
Sbjct: 119 LQSKETTAAGDS 130
>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics,
structural genomics consortium, SGC, signaling protein;
1.40A {Homo sapiens}
Length = 92
Score = 57.3 bits (139), Expect = 2e-11
Identities = 21/88 (23%), Positives = 42/88 (47%), Gaps = 6/88 (6%)
Query: 37 QNTFTVVI-KRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAAAE--LKRGDIIRKIGD 93
+T T+ + K+P + GL I G + D+ + ++ + G A A+ L +GD I +
Sbjct: 3 SDTLTIGLQKKPGK--GLGLSIVGKRN-DTGVFVSDIVKGGIADADGRLMQGDQILMVNG 59
Query: 94 YDSRDLRHKDATNFFQSSDTSISLGIQR 121
D R+ + + S +++L + R
Sbjct: 60 EDVRNATQEAVAALLKCSLGTVTLEVGR 87
>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction,
membrane, phosphorylati domain, protein binding; 1.70A
{Homo sapiens} PDB: 2jwe_A 2osg_A
Length = 81
Score = 56.5 bits (137), Expect = 2e-11
Identities = 17/85 (20%), Positives = 40/85 (47%), Gaps = 8/85 (9%)
Query: 40 FTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAAAE--LKRGDIIRKIGDYDSR 97
V + + ++ +GLR+A I + ++ + AA + ++ GD++ KI +
Sbjct: 2 SKVTLVKSRKNEEYGLRLASH------IFVKEISQDSLAARDGNIQEGDVVLKINGTVTE 55
Query: 98 DLRHKDATNFFQSSDTSISLGIQRN 122
++ DA + S + + +QR+
Sbjct: 56 NMSLTDAKTLIERSKGKLKMVVQRD 80
>2o2t_A Multiple PDZ domain protein; structural protein, structural
genomics, structural genomics consortium, SGC; 2.70A
{Homo sapiens}
Length = 117
Score = 57.4 bits (139), Expect = 2e-11
Identities = 20/102 (19%), Positives = 38/102 (37%), Gaps = 8/102 (7%)
Query: 31 KPAQPHQNTFTVVIKRPNRHHSWGLRIAGGCD---LDSPIVITKVYPGTPAAAE--LKRG 85
AQ ++K P+ G + G + I + ++ G+ A + LK
Sbjct: 14 NMAQGRHVEVFELLKPPSG--GLGFSVVGLRSENRGELGIFVQEIQEGSVAHRDGRLKET 71
Query: 86 DIIRKIGDYD-SRDLRHKDATNFFQSSDTSISLGIQRNPPGE 126
D I I + + H+ A + Q + ++ L I R +
Sbjct: 72 DQILAINGQALDQTITHQQAISILQKAKDTVQLVIARGSLPQ 113
>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken
structural genomics/proteomics initiative, RSGI, protein
binding; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 57.5 bits (139), Expect = 3e-11
Identities = 21/110 (19%), Positives = 32/110 (29%), Gaps = 4/110 (3%)
Query: 29 SGKPAQPHQNTFTVVIKRPNRHHSWGLRIAGGCDL-DSPIVITKVYPGTPAAAE--LKRG 85
SG V I + + G+ + S I I ++ P + L G
Sbjct: 6 SGDTVANASGPLMVEIVK-TPGSALGISLTTTSLRNKSVITIDRIKPASVVDRSGALHPG 64
Query: 86 DIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPPGEKKAASGSRS 135
D I I +AT S + L I P ++ S
Sbjct: 65 DHILSIDGTSMEHCSLLEATKLLASISEKVRLEILPVPQSQRPLRPSSGP 114
>2eaq_A LIM domain only protein 7; conserved hypothetical protein,
structural genomics, NPPSFA; 1.46A {Homo sapiens}
Length = 90
Score = 56.3 bits (136), Expect = 3e-11
Identities = 14/84 (16%), Positives = 30/84 (35%), Gaps = 6/84 (7%)
Query: 42 VVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAA-AELKRGDIIRKIGDYDSRDLR 100
+ + P + +G I I + V G+PA ++L+ D I I +
Sbjct: 8 SINQTPGKSLDFGFTIKWD---IPGIFVASVEAGSPAEFSQLQVDDEIIAINNTKFSYND 64
Query: 101 HKDATNFFQSSD--TSISLGIQRN 122
K+ + + + ++R
Sbjct: 65 SKEWEEAMAKAQETGHLVMDVRRY 88
>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR
{Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A
1vj6_A 1gm1_A 1ozi_A
Length = 96
Score = 56.4 bits (137), Expect = 3e-11
Identities = 16/91 (17%), Positives = 37/91 (40%), Gaps = 7/91 (7%)
Query: 39 TFTVVIKRPNRHHSWGLRIAGGCDL---DSPIVITKVYPGTPAAAE--LKRGDIIRKIGD 93
F V + + + +S G+ + GG + I + V P A ++ + +GD + +
Sbjct: 6 IFEVELAKND--NSLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNG 63
Query: 94 YDSRDLRHKDATNFFQSSDTSISLGIQRNPP 124
HK A +++ + L +++
Sbjct: 64 VSLEGATHKQAVETLRNTGQVVHLLLEKGQS 94
>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger,
oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1
PDB: 1qav_B
Length = 112
Score = 57.1 bits (138), Expect = 3e-11
Identities = 19/106 (17%), Positives = 38/106 (35%), Gaps = 5/106 (4%)
Query: 38 NTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAAAE--LKRGDIIRKIGDYD 95
N +V + + + G + P++I+ + G A ++ GDII + D
Sbjct: 1 NVISVRLFK-RKVGGLGFLVKERVS-KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRP 58
Query: 96 SRDLRHKDATNFFQSSDTSISLGIQ-RNPPGEKKAASGSRSVTPLP 140
DL + A + + + + R P G + + P
Sbjct: 59 LVDLSYDSALEVLRGIASETHVVLILRGPEGFTTHLETTFTGDGTP 104
>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 117
Score = 57.1 bits (138), Expect = 3e-11
Identities = 25/115 (21%), Positives = 41/115 (35%), Gaps = 13/115 (11%)
Query: 26 TRKSGKPAQPHQN-TFTVVIKRPNRHHSWGLRIAGGCD---------LDSPIVITKVYPG 75
+ S P H V I R + S G+ I GG I I +V
Sbjct: 2 SSGSSGPNFSHWGPPRIVEIFR-EPNVSLGISIVGGQTVIKRLKNGEELKGIFIKQVLED 60
Query: 76 TPAAAE--LKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPPGEKK 128
+PA LK GD I ++ D ++ H +A +++ + +Q +
Sbjct: 61 SPAGKTNALKTGDKILEVSGVDLQNASHSEAVEAIKNAGNPVVFIVQSLSSTPRV 115
>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction,
membrane, phosphoprot domain, tight junction,
transmembrane; 2.40A {Homo sapiens}
Length = 92
Score = 56.2 bits (136), Expect = 4e-11
Identities = 17/88 (19%), Positives = 40/88 (45%), Gaps = 8/88 (9%)
Query: 41 TVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAAAE--LKRGDIIRKIGDYDSRD 98
V + + ++ +GLR+A I + ++ + AA + ++ GD++ KI + +
Sbjct: 5 KVTLVKSAKNEEYGLRLASH------IFVKEISQDSLAARDGNIQEGDVVLKINGTVTEN 58
Query: 99 LRHKDATNFFQSSDTSISLGIQRNPPGE 126
+ DA + S + + +QR+
Sbjct: 59 MSLTDAKTLIERSKGKLKMVVQRDERAT 86
>2awx_A Synapse associated protein 97; membrane protein, synaptic
signaling, trafficking protein; HET: HIS; 1.80A {Rattus
norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A
Length = 105
Score = 56.6 bits (137), Expect = 4e-11
Identities = 17/96 (17%), Positives = 39/96 (40%), Gaps = 9/96 (9%)
Query: 37 QNTFTVVIKRPNRHHSWGLRIAGGCD-----LDSPIVITKVYPGTPAAAE--LKRGDIIR 89
+ + + + + G IAGG D+ I +TK+ G A + L+ GD +
Sbjct: 2 EKIMEIKLIKGPK--GLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLL 59
Query: 90 KIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPPG 125
+ ++ H++A +++ + L + +
Sbjct: 60 AVNSVSLEEVTHEEAVTALKNTSDFVYLKVAKPTSM 95
>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 129
Score = 57.1 bits (138), Expect = 5e-11
Identities = 22/114 (19%), Positives = 40/114 (35%), Gaps = 8/114 (7%)
Query: 29 SGKPAQPHQNTFTVVIKRPNRHHSWGLRIAGGCDL-----DSPIVITKVYPGTPAAAE-- 81
SG T+ V + R + S G+RI G S I + V PG+ A
Sbjct: 6 SGGSDSSLFETYNVELVRKDGQ-SLGIRIVGYVGTSHTGEASGIYVKSVIPGSAAYHNGH 64
Query: 82 LKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPPGEKKAASGSRS 135
++ D I + + + + D +++ + L + R + S
Sbjct: 65 IQVNDKIVAVDGVNIQGFANHDVVEVLRNAGQVVHLTLVRRKTSSSTSPLEPPS 118
>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural
genomics, structural GEN consortium, SGC, structural
protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1
PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A
Length = 94
Score = 55.8 bits (135), Expect = 7e-11
Identities = 21/91 (23%), Positives = 42/91 (46%), Gaps = 9/91 (9%)
Query: 38 NTFTVVIKRPNRHHSWGLRIAGGCD-----LDSPIVITKVYPGTPAAAE--LKRGDIIRK 90
V + + + G IAGG D+ I ITK+ G A + L+ GD +
Sbjct: 3 TIMEVNLLKGPK--GLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLA 60
Query: 91 IGDYDSRDLRHKDATNFFQSSDTSISLGIQR 121
+ + + +D+RH++A +++ + L + +
Sbjct: 61 VNNTNLQDVRHEEAVASLKNTSDMVYLKVAK 91
>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain,
structural genomics, structural genom consortium, SGC,
phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 56.2 bits (136), Expect = 7e-11
Identities = 18/94 (19%), Positives = 40/94 (42%), Gaps = 9/94 (9%)
Query: 38 NTFTVVIKRPNRHHSWGLRIAGGCD-----LDSPIVITKVYPGTPAAAE--LKRGDIIRK 90
+ + + + G IAGG D+ I +TK+ G A + L+ GD +
Sbjct: 24 TVVEIKLFKGPK--GLGFSIAGGVGNQHIPGDNSIYVTKIIDGGAAQKDGRLQVGDRLLM 81
Query: 91 IGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPP 124
+ +Y ++ H++A +++ + L + +
Sbjct: 82 VNNYSLEEVTHEEAVAILKNTSEVVYLKVGKPTT 115
>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 111
Score = 55.8 bits (135), Expect = 8e-11
Identities = 19/106 (17%), Positives = 36/106 (33%), Gaps = 12/106 (11%)
Query: 30 GKPAQPHQNTFTVVIKRPNRHHSWGLRIAGGCD---------LDSPIVITKVYPGTPAAA 80
G + I++ G+ I GG D I I+KV P A
Sbjct: 1 GSSGSSGPGLRELCIQK-APGERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGR 59
Query: 81 E--LKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPP 124
+ L+ G + ++ L H +A +S ++++ +
Sbjct: 60 DGRLRVGLRLLEVNQQSLLGLTHGEAVQLLRSVGDTLTVLVCDGFE 105
>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand,
cytoplasm, developmental protein, phosphoprotein, WNT
signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A
3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A
Length = 108
Score = 55.9 bits (135), Expect = 8e-11
Identities = 21/99 (21%), Positives = 42/99 (42%), Gaps = 8/99 (8%)
Query: 36 HQNTFTVVIKRPNRHHSWGLRIAGGCDL--DSPIVITKVYPGTPAAAE--LKRGDIIRKI 91
H N TV + ++ G+ I G + D I I + G AA+ ++ GD++ ++
Sbjct: 3 HMNIITVTLNMEK-YNFLGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQV 61
Query: 92 GDYDSRDLRHKDATNFFQSSDTS---ISLGIQRNPPGEK 127
D + ++ + DA + I L + ++ G
Sbjct: 62 NDMNFENMSNDDAVRVLRDIVHKPGPIVLTVAKSGGGSG 100
>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, protein binding;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 55.5 bits (134), Expect = 1e-10
Identities = 17/85 (20%), Positives = 32/85 (37%), Gaps = 5/85 (5%)
Query: 37 QNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIV-ITKVYPGTPAAAE--LKRGDIIRKIGD 93
+ V +K+ + G+ I GG + P+ I + G A LK G +I ++
Sbjct: 5 SSGTLVRVKKSAA--TLGIAIEGGANTRQPLPRIVTIQRGGSAHNCGQLKVGHVILEVNG 62
Query: 94 YDSRDLRHKDATNFFQSSDTSISLG 118
R H++A + +
Sbjct: 63 LTLRGKEHREAARIIAEAFKTKDRD 87
>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}
Length = 263
Score = 58.2 bits (140), Expect = 1e-10
Identities = 31/148 (20%), Positives = 56/148 (37%), Gaps = 7/148 (4%)
Query: 39 TFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAAAE--LKRGDIIRKIGDYDS 96
V +++ + G+ I GG + PI+I+K++ G A L GD I + D
Sbjct: 78 RRRVTVRKAD-AGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDL 136
Query: 97 RDLRHKDATNFFQSSDTSISLGIQRN---PPGEKKAASGSRSVTPLPIVDYCQKE-SKAS 152
H +A + + + L ++ P K +A G+ P Q++ S
Sbjct: 137 SSATHDEAVQALKKTGKEVVLEVKYMKEVSPYFKNSAGGTSVGWDSPPASPLQRQPSSPG 196
Query: 153 SASMSVVNSFHDFLDHQHVHRAQAVASP 180
++ + H L +V R P
Sbjct: 197 PQPRNLSEAKHVSLKMAYVSRRCTPTDP 224
>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus
interaction, structural genomics consortium,
synaptosome, tight junction; 1.35A {Homo sapiens}
Length = 97
Score = 55.0 bits (133), Expect = 1e-10
Identities = 15/93 (16%), Positives = 35/93 (37%), Gaps = 8/93 (8%)
Query: 39 TFTVVIKRPNRHHSWGLRIAGGCDL----DSPIVITKVYPGTPAAAE--LKRGDIIRKIG 92
TF V + + + G+ IAG S I + + + + ++ GD I +
Sbjct: 5 TFDVELTKNVQ--GLGITIAGYIGDKKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVD 62
Query: 93 DYDSRDLRHKDATNFFQSSDTSISLGIQRNPPG 125
+ + ++ A + + ++ L + R
Sbjct: 63 GTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGET 95
>2xkx_A Disks large homolog 4; structural protein, scaffold protein,
membrane associated GU kinase; 22.9A {Rattus norvegicus}
Length = 721
Score = 58.4 bits (140), Expect = 2e-10
Identities = 31/127 (24%), Positives = 54/127 (42%), Gaps = 11/127 (8%)
Query: 5 NVNTNSKSLDALTSTNQALIPTRKSGKPAQPHQNTFTVVIKRPNRHHSWGLRIAGGCD-- 62
++ + S + +T+ P +G + + ++R N G IAGG D
Sbjct: 28 HLPNQANSPPVIVNTDTLEAPGYVNGTEGEME--YEEITLERGNS--GLGFSIAGGTDNP 83
Query: 63 ---LDSPIVITKVYPGTPAAAE--LKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISL 117
D I ITK+ PG AA + L+ D I + + D R++ H A + + + + L
Sbjct: 84 HIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRL 143
Query: 118 GIQRNPP 124
+ R P
Sbjct: 144 YVMRRKP 150
Score = 52.6 bits (125), Expect = 2e-08
Identities = 26/110 (23%), Positives = 45/110 (40%), Gaps = 5/110 (4%)
Query: 17 TSTNQALIPTRKSGKPAQPHQNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGT 76
TS + + + +VI R + G I GG D I I+ + G
Sbjct: 286 TSPRRYSPVAKDLLGEEDIPREPRRIVIHRGST--GLGFNIVGGED-GEGIFISFILAGG 342
Query: 77 PAA--AELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPP 124
PA EL++GD I + D R+ H+ A +++ ++++ Q P
Sbjct: 343 PADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPE 392
>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane,
HOST- interaction, structural genomics consortium,
synaptosome, T junction; 1.80A {Homo sapiens}
Length = 123
Score = 54.8 bits (132), Expect = 3e-10
Identities = 25/108 (23%), Positives = 36/108 (33%), Gaps = 13/108 (12%)
Query: 29 SGKPAQPHQNTFTVVIKRPNRHHSWGLRIAGGCDL---------DSPIVITKVYPGTPAA 79
Q Q V + R S G+ I GG + I I V +PA
Sbjct: 16 ENLYFQSMQ-PRRVELWR-EPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAG 73
Query: 80 AE--LKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPPG 125
LK GD I ++ D RD H+ A + + + +Q
Sbjct: 74 KNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSIIST 121
>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling
protein; NMR {Homo sapiens}
Length = 83
Score = 53.4 bits (129), Expect = 3e-10
Identities = 18/86 (20%), Positives = 35/86 (40%), Gaps = 8/86 (9%)
Query: 41 TVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAA-AELKRGDIIRKIGDYDSRDL 99
+V + R +G ++G +P V++ V G+PA L+ GD I + + + +
Sbjct: 5 SVEVARGR--AGYGFTLSG----QAPCVLSCVMRGSPADFVGLRAGDQILAVNEINVKKA 58
Query: 100 RHKDATNFFQSSDTSISLGIQRNPPG 125
H+D + + I G
Sbjct: 59 SHEDVVKLIGKCSGVLHMVIAE-GVG 83
>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric
oxide synthase, oxidoreductase; NMR {Rattus norvegicus}
SCOP: b.36.1.1
Length = 127
Score = 54.5 bits (131), Expect = 4e-10
Identities = 19/110 (17%), Positives = 38/110 (34%), Gaps = 5/110 (4%)
Query: 34 QPHQNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAAAE--LKRGDIIRKI 91
N +V + + + G + P++I+ + G A ++ GDII +
Sbjct: 4 MIEPNVISVRLFK-RKVGGLGFLVKERVS-KPPVIISDLIRGGAAEQSGLIQAGDIILAV 61
Query: 92 GDYDSRDLRHKDATNFFQSSDTSISLGIQ-RNPPGEKKAASGSRSVTPLP 140
D DL + A + + + + R P G + + P
Sbjct: 62 NDRPLVDLSYDSALEVLRGIASETHVVLILRGPEGFTTHLETTFTGDGTP 111
>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics,
PDZ domain, riken structural genomics/proteomics
initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB:
2koh_A 2k1z_A 2k20_A
Length = 127
Score = 54.4 bits (131), Expect = 4e-10
Identities = 15/101 (14%), Positives = 29/101 (28%), Gaps = 7/101 (6%)
Query: 17 TSTNQALIPTRKSGKPAQPHQNTFTVVIKRPNRHHSWGLRIAGGCD----LDSPIVITKV 72
S+ P + Q T + + G+ + G D I I +
Sbjct: 4 GSSGLKGEPDCYALSLESSEQLTLEIPLNDSG-SAGLGVSLKGNKSRETGTDLGIFIKSI 62
Query: 73 YPGTPAAAE--LKRGDIIRKIGDYDSRDLRHKDATNFFQSS 111
G A + L+ D + + + +A + S
Sbjct: 63 IHGGAAFKDGRLRMNDQLIAVNGETLLGKSNHEAMETLRRS 103
>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, unknown function;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 124
Score = 54.1 bits (130), Expect = 5e-10
Identities = 21/91 (23%), Positives = 36/91 (39%), Gaps = 5/91 (5%)
Query: 35 PHQNTFTVVIKRPNRHHSWGLRIAGGCD--LDSPIVITKVYPGTPAAAE--LKRGDIIRK 90
V + R N GL + D D I I+++ P + AA + ++ GD I +
Sbjct: 16 EELELEEVDLYRMNSQDKLGLTVCYRTDDEDDIGIYISEIDPNSIAAKDGRIREGDRIIQ 75
Query: 91 IGDYDSRDLRHKDATNFFQSSDTSISLGIQR 121
I + ++ A + + SL I R
Sbjct: 76 INGIEVQNREEAVAL-LTSEENKNFSLLIAR 105
>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 107
Score = 53.5 bits (129), Expect = 6e-10
Identities = 16/105 (15%), Positives = 32/105 (30%), Gaps = 10/105 (9%)
Query: 30 GKPAQPHQNTFTVVIKRPNRHHSWGLRIAGGCD------LDSPIVITKVYPGTPAAAE-- 81
G F V +++ G+ I G I + V G A +
Sbjct: 1 GSSGSSGLELFPVELEKDED--GLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGR 58
Query: 82 LKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPPGE 126
++ D I ++ + A +++ ++ I R P
Sbjct: 59 IQVNDQIVEVDGISLVGVTQNFAATVLRNTKGNVRFVIGREKPSG 103
>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3;
neuron-specific X11L2 protein, neuronal
MUNC18-1-interacting protein 3, MINT-3; NMR {Homo
sapiens}
Length = 101
Score = 52.8 bits (127), Expect = 8e-10
Identities = 23/101 (22%), Positives = 33/101 (32%), Gaps = 7/101 (6%)
Query: 30 GKPAQPHQNTFTVVIKRPNRHHSWGLRIAGG--CDLDSPIVITKVYPGTPAAAE--LKRG 85
G N V +++ R G+ + L VI + G PA L G
Sbjct: 1 GSSGSSGDNCREVHLEK-RRGEGLGVALVESGWGSLLPTAVIANLLHGGPAERSGALSIG 59
Query: 86 DIIRKIGDYDSRDLRHKDATNFFQS--SDTSISLGIQRNPP 124
D + I L + S TS++L I PP
Sbjct: 60 DRLTAINGTSLVGLPLAACQAAVRETKSQTSVTLSIVHCPP 100
>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI,
structural genomics, alternative splicing, cell cycle,
cell division, cell junction; NMR {Homo sapiens}
Length = 121
Score = 53.2 bits (128), Expect = 1e-09
Identities = 16/90 (17%), Positives = 33/90 (36%), Gaps = 9/90 (10%)
Query: 39 TFTVVIKRPNRHHSWGLRIAGGCDL---DSPIVITKVYPGTPAAAE--LKRGDIIRKIGD 93
+ +K+ G I +PI + + P A + LK GD + ++
Sbjct: 31 RLNIQLKKGTE--GLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNG 88
Query: 94 YDSRDLRHKDATNFFQSSDTS--ISLGIQR 121
D ++ + +S+ +SL + R
Sbjct: 89 VDLVGKSQEEVVSLLRSTKMEGTVSLLVFR 118
>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter
usage, alternative splicing, cell junction, cell
membrane, disease mutation; 1.75A {Homo sapiens}
Length = 88
Score = 51.9 bits (125), Expect = 1e-09
Identities = 20/90 (22%), Positives = 36/90 (40%), Gaps = 8/90 (8%)
Query: 40 FTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAAAE--LKRGDIIRKIGDYDSR 97
V++ + + +GLR L S I + ++ A + L GDII KI +
Sbjct: 2 IGVLLMKSRANEEYGLR------LGSQIFVKEMTRTGLATKDGNLHEGDIILKINGTVTE 55
Query: 98 DLRHKDATNFFQSSDTSISLGIQRNPPGEK 127
++ DA + S + L + R+
Sbjct: 56 NMSLTDARKLIEKSRGKLQLVVLRDLEHHH 85
>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3,
human, structural genomics, structural GE consortium,
SGC, signaling protein; 2.39A {Homo sapiens} SCOP:
b.36.1.1
Length = 91
Score = 52.0 bits (125), Expect = 1e-09
Identities = 20/89 (22%), Positives = 36/89 (40%), Gaps = 7/89 (7%)
Query: 41 TVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAA-AELKRGDIIRKIGDYDSRDL 99
+ I R +G I DSP+ + V G PA A L++ D + ++ +
Sbjct: 6 QITIPRGKD--GFGFTICC----DSPVRVQAVDSGGPAERAGLQQLDTVLQLNERPVEHW 59
Query: 100 RHKDATNFFQSSDTSISLGIQRNPPGEKK 128
+ + + +S + I L + R P K
Sbjct: 60 KCVELAHEIRSCPSEIILLVWRMVPQVKP 88
>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural
proteomics in europe, spine, structural genomics,
hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 108
Score = 51.2 bits (123), Expect = 5e-09
Identities = 18/107 (16%), Positives = 38/107 (35%), Gaps = 13/107 (12%)
Query: 32 PAQPHQNTFTVVIKRPNRHHSWGLRIAGGCDL--------DSPIVITKVYPGTPAAAE-- 81
P +P F V + + + S G+ + D I + V P A ++
Sbjct: 4 PPKPGD-IFEVELAKNDN--SLGISVTVLFDKGGVNTSVRHGGIYVKAVIPQGAAESDGR 60
Query: 82 LKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPPGEKK 128
+ +GD + + HK A +++ + L +++ K
Sbjct: 61 IHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKGQSPTSK 107
>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain,
scaffolding protein signaling protein; 1.56A {Homo
sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A
1obz_A 1w9o_A 1w9q_A 1ybo_A
Length = 166
Score = 52.1 bits (125), Expect = 5e-09
Identities = 18/91 (19%), Positives = 37/91 (40%), Gaps = 6/91 (6%)
Query: 36 HQNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAA-AELKRGDIIRKIGDY 94
+ V++ + ++ GLR+ D+ I + V +PA+ L+ GD + +I
Sbjct: 2 AMDPREVILCK-DQDGKIGLRLKSI---DNGIFVQLVQANSPASLVGLRFGDQVLQINGE 57
Query: 95 DSRDLRHKDATNFF-QSSDTSISLGIQRNPP 124
+ A Q+ I++ I+ P
Sbjct: 58 NCAGWSSDKAHKVLKQAFGEKITMTIRDRPF 88
>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein
complex, PDZ domain, peptide binding protein; 2.60A
{Drosophila melanogaster}
Length = 206
Score = 52.6 bits (126), Expect = 7e-09
Identities = 20/121 (16%), Positives = 41/121 (33%), Gaps = 7/121 (5%)
Query: 8 TNSKSLDALTSTNQALIPTRKSGKPAQPHQNTFTVVIKRPNRHHSWGLRIAGGCDLDSPI 67
T K +T + + + ++K+ + GL ++ +
Sbjct: 84 TTLKVHQLFHTTYEKAVTLTVFRADPPELEKFNVDLMKKAGKEL--GLSLSPN---EIGC 138
Query: 68 VITKVYPGTPAAAE--LKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPPG 125
I + G + L+RGDII K L + F+ ++ +S+ + R P
Sbjct: 139 TIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFKGANGKVSMEVTRPKPT 198
Query: 126 E 126
Sbjct: 199 L 199
Score = 50.7 bits (121), Expect = 3e-08
Identities = 24/107 (22%), Positives = 42/107 (39%), Gaps = 12/107 (11%)
Query: 25 PTRKSGKPAQPHQN---TFTVVIKRPNRHHSWGLRIAGGCD--LDSPIVITKVYPGTPAA 79
P K +PA + +K + G+ + GG + + + VIT VYP A
Sbjct: 2 PGSKPQEPATAEIKPNKKILIELKVEKK--PMGVIVCGGKNNHVTTGCVITHVYPEGQVA 59
Query: 80 AE--LKRGDIIRKIGDYDSRD--LRHKDATNFFQSS-DTSISLGIQR 121
A+ LK D I I + F ++ + +++L + R
Sbjct: 60 ADKRLKIFDHICDINGTPIHVGSMTTLKVHQLFHTTYEKAVTLTVFR 106
>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein,
STXBP4 protein, structural genomics, NPPSFA; NMR {Mus
musculus} SCOP: b.36.1.1
Length = 109
Score = 50.5 bits (121), Expect = 8e-09
Identities = 20/104 (19%), Positives = 37/104 (35%), Gaps = 8/104 (7%)
Query: 29 SGKPAQPHQNTFTVVIKRPNRHHSWGLRIAGGCD--LDSPIVITKVYPGTPAAAE--LKR 84
SG P + + GL+I GG + + I +V PG + LK
Sbjct: 3 SGSSGSPLDRDPAFRVITVTKETGLGLKILGGINRNEGPLVYIHEVIPGGDCYKDGRLKP 62
Query: 85 GDIIRKIGDYDSRDLRHKDATNFFQSS----DTSISLGIQRNPP 124
GD + I + ++A + + ++ + R+ P
Sbjct: 63 GDQLVSINKESMIGVSFEEAKSIITRAKLRSESPWEIAFIRSGP 106
>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3,
microtubule associated serine/threonine kinase 3, PDZ
domain, structural genomics; 1.20A {Homo sapiens} PDB:
2w7r_A 2kqf_A 2kyl_A 3ps4_A
Length = 99
Score = 50.1 bits (120), Expect = 9e-09
Identities = 22/96 (22%), Positives = 30/96 (31%), Gaps = 10/96 (10%)
Query: 41 TVVIKRPNRHHSWGLRIAGG-------CDLDSPIVITKVYPGTPAA-AELKRGDIIRKIG 92
+VI + +G + V+ V G+PA A L+ GD+I I
Sbjct: 5 PIVIHSSGK--KYGFSLRAIRVYMGDSDVYTVHHVVWSVEDGSPAQEAGLRAGDLITHIN 62
Query: 93 DYDSRDLRHKDATNFFQSSDTSISLGIQRNPPGEKK 128
L H D S ISL E
Sbjct: 63 GESVLGLVHMDVVELLLKSGNKISLRTTALENTETS 98
>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain,
RAB3-interacting molecule, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.36.1.1 PDB: 2css_A 1zub_A
Length = 131
Score = 50.6 bits (121), Expect = 1e-08
Identities = 19/97 (19%), Positives = 36/97 (37%), Gaps = 8/97 (8%)
Query: 35 PHQNTFTVVIKRPNRHHSWGLRIAGGCDL---DSPIVITKVYPGTPAAAE--LKRGDIIR 89
++ + R + GL++ GG ITKV G+ A L+ GD +
Sbjct: 33 LNKRLKDGSVPRDS-GAMLGLKVVGGKMTESGRLCAFITKVKKGSLADTVGHLRPGDEVL 91
Query: 90 KIGDYDSRDLRHKDATNFFQSS--DTSISLGIQRNPP 124
+ + ++ N S + + L + R+ P
Sbjct: 92 EWNGRLLQGATFEEVYNIILESKPEPQVELVVSRSGP 128
>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase
binding domain, signaling protein; HET: GNP; 2.10A {Mus
musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A
2lc7_A 1rzx_A
Length = 128
Score = 50.2 bits (120), Expect = 2e-08
Identities = 12/98 (12%), Positives = 31/98 (31%), Gaps = 11/98 (11%)
Query: 38 NTFTVVIKRPNRHHSWGLRIAGGCDL---------DSPIVITKVYPGTPAAAE--LKRGD 86
V + + G I G + I I+++ PG A + L D
Sbjct: 29 THRRVRLCKYGTEKPLGFYIRDGSSVRVTPHGLEKVPGIFISRLVPGGLAQSTGLLAVND 88
Query: 87 IIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPP 124
+ ++ + T+ ++ ++ + ++
Sbjct: 89 EVLEVNGIEVSGKSLDQVTDMMIANSRNLIITVRPANQ 126
>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function;
1.80A {Homo sapiens} PDB: 3ch8_A
Length = 195
Score = 51.1 bits (121), Expect = 2e-08
Identities = 23/112 (20%), Positives = 39/112 (34%), Gaps = 8/112 (7%)
Query: 54 GLRIAGGCDL--------DSPIVITKVYPGTPAAAELKRGDIIRKIGDYDSRDLRHKDAT 105
G I+GG D I +T+V P PA+ L+ GD I + Y ++ H A
Sbjct: 5 GFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASKLLQPGDKIIQANGYSFINIEHGQAV 64
Query: 106 NFFQSSDTSISLGIQRNPPGEKKAASGSRSVTPLPIVDYCQKESKASSASMS 157
+ ++ ++ L I R K R + + +
Sbjct: 65 SLLKTFQNTVELIIVREVGNGAKQEIRVRVEKDGGSGGVSSVPTNLEVVAAT 116
>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling
protein; 1.80A {Mus musculus}
Length = 106
Score = 49.4 bits (118), Expect = 2e-08
Identities = 18/92 (19%), Positives = 34/92 (36%), Gaps = 4/92 (4%)
Query: 42 VVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLR 100
+ K+ + ++G + D +I + G+PA A L GD + +I
Sbjct: 6 KLSKQEGQ--NYGFFLRIEKD-TDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDKEE 62
Query: 101 HKDATNFFQSSDTSISLGIQRNPPGEKKAASG 132
H + S S++L + EK +
Sbjct: 63 HAQVVELVRKSGNSVTLLVLDGDSYEKAVKNQ 94
>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain,
adaptor protein, SR-BI, signaling protein; 1.30A {Mus
musculus} PDB: 3r69_A*
Length = 95
Score = 48.8 bits (117), Expect = 3e-08
Identities = 22/95 (23%), Positives = 36/95 (37%), Gaps = 8/95 (8%)
Query: 30 GKPAQPHQNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAA-AELKRGDII 88
G P QP VVIK+ + +G + G + +I + PG+PA A LK D++
Sbjct: 1 GSPHQPR----VVVIKKGSN--GYGFYLRAGPE-QKGQIIKDIEPGSPAEAAGLKNNDLV 53
Query: 89 RKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNP 123
+ L H + +L +
Sbjct: 54 VAVNGKSVEALDHDGVVEMIRKGGDQTTLLVLDKE 88
>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural
genomics, mouse cDNA, riken structural
genomics/proteomics initiative; NMR {Mus musculus} SCOP:
b.36.1.1
Length = 126
Score = 49.5 bits (118), Expect = 3e-08
Identities = 16/114 (14%), Positives = 40/114 (35%), Gaps = 10/114 (8%)
Query: 12 SLDALTSTNQALIPTRKSGKPAQPHQNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITK 71
S + S N+ ++ + ++ + N GL + + I+
Sbjct: 2 SSGSSGSKNEKEQLSKAKASVSSLNK-VIQTKLTVGNL--GLGLVVIQN---GPYLQISH 55
Query: 72 VYPGTPAAAE--LKRGDIIRKIGDYDSRDLRHKDATNFFQS--SDTSISLGIQR 121
+ AA++ L+ GD++ +G + ++ Q+ T + + R
Sbjct: 56 LINKGAAASDGILQPGDVLISVGHANVLGYTLREFLKLLQNITIGTVLQIKAYR 109
>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain,
arhgef11, KIAA0380, structural genomics, NPPSFA; NMR
{Homo sapiens} PDB: 2omj_A 2os6_A
Length = 93
Score = 48.5 bits (116), Expect = 3e-08
Identities = 22/100 (22%), Positives = 40/100 (40%), Gaps = 12/100 (12%)
Query: 29 SGKPAQPHQNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAA-AELKRGDI 87
SG V+I++ H +G ++G D +++ V PG A A +K GD
Sbjct: 3 SGSSGVQR----CVIIQKDQ--HGFGFTVSG----DRIVLVQSVRPGGAAMKAGVKEGDR 52
Query: 88 IRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPPGEK 127
I K+ + H + +S ++L + + G
Sbjct: 53 IIKVNGTMVTNSSHLEVVKLIKSGA-YVALTLLGSSSGPS 91
>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa,
Na/PI cotransporter C- terminal-associated protein,
NAPI-CAP1; NMR {Mus musculus}
Length = 114
Score = 48.6 bits (116), Expect = 4e-08
Identities = 21/105 (20%), Positives = 37/105 (35%), Gaps = 4/105 (3%)
Query: 29 SGKPAQPHQNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA-AAELKRGDI 87
S A + K+ + ++G + D D +I + G+PA A L GD
Sbjct: 5 SSGMASTFNPRECKLSKQEGQ--NYGFFLRIEKDTD-GHLIRVIEEGSPAEKAGLLDGDR 61
Query: 88 IRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPPGEKKAASG 132
+ +I H + S S++L + EK +
Sbjct: 62 VLRINGVFVDKEEHAQVVELVRKSGNSVTLLVLDGDSYEKAVKNQ 106
>2eei_A PDZ domain-containing protein 1; regulatory factor, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 106
Score = 47.8 bits (114), Expect = 8e-08
Identities = 15/106 (14%), Positives = 35/106 (33%), Gaps = 8/106 (7%)
Query: 29 SGKPAQPHQNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAA-AELKRGDI 87
SG QP + + S+G + + +T + P A A + D
Sbjct: 3 SGSSGQPR----LCYLVKEG--GSYGFSLKTVQG-KKGVYMTDITPQGVAMRAGVLADDH 55
Query: 88 IRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPPGEKKAASGS 133
+ ++ + D H++ + S + + + ++ S
Sbjct: 56 LIEVNGENVEDASHEEVVEKVKKSGSRVMFLLVDKETDKRHVEQKS 101
>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 102
Score = 47.4 bits (113), Expect = 1e-07
Identities = 22/96 (22%), Positives = 37/96 (38%), Gaps = 4/96 (4%)
Query: 41 TVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDL 99
VVIK+ + +G + G + +I + PG+PA AA LK D++ + L
Sbjct: 9 VVVIKKGSN--GYGFYLRAGPE-QKGQIIKDIEPGSPAEAAGLKNNDLVVAVNGKSVEAL 65
Query: 100 RHKDATNFFQSSDTSISLGIQRNPPGEKKAASGSRS 135
H + +L + + SG S
Sbjct: 66 DHDGVVEMIRKGGDQTTLLVLDKEAESIYSLSGPSS 101
>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding,
RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A
{Homo sapiens}
Length = 109
Score = 47.1 bits (112), Expect = 2e-07
Identities = 13/81 (16%), Positives = 29/81 (35%), Gaps = 8/81 (9%)
Query: 41 TVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAAAE-LKRGDIIRKIGDYDSRDL 99
++ G + G ++P+ + + P A+ + GD I I D + L
Sbjct: 26 SIRFTAEE--GDLGFTLRG----NAPVQVHFLDPYCSASVAGAREGDYIVSIQLVDCKWL 79
Query: 100 RHKDATNFFQSS-DTSISLGI 119
+ +S + I + +
Sbjct: 80 TLSEVMKLLKSFGEDEIEMKV 100
>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain,
intracellular signaling cascade, signal transduction;
NMR {Mus musculus} SCOP: b.36.1.1
Length = 111
Score = 46.7 bits (111), Expect = 2e-07
Identities = 16/99 (16%), Positives = 31/99 (31%), Gaps = 12/99 (12%)
Query: 41 TVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAA-AELKRGDIIRKIGDYDSRDL 99
+ G + G ++P+ + + P A+ A K GD I I D + L
Sbjct: 18 GIHFTVEEG--DLGFTLRG----NTPVQVHFLDPHCSASLAGAKEGDYIVSIQGVDCKWL 71
Query: 100 RHKDATNFFQSS-DTSISLGI----QRNPPGEKKAASGS 133
+ +S + + + K+ S
Sbjct: 72 TVSEVMKLLKSFGGEEVEMKVVSLLDSTSSMHNKSGPSS 110
>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti
density, glutametergic receptors, carbohydrate
metabolism, cycle, cell division; HET: MES; 1.85A
{Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A
Length = 170
Score = 48.0 bits (114), Expect = 2e-07
Identities = 13/112 (11%), Positives = 34/112 (30%), Gaps = 10/112 (8%)
Query: 18 STNQALIPTRKSGKPAQPHQNTFTVVIKRPNRHHSWGLRIAGGCDL------DSPIVITK 71
+ + F V +++ + G+ I G I +
Sbjct: 60 DVDPMAASAEYELEKRVERLELFPVELEKDSE--GLGISIIGMGAGADMGLEKLGIFVKT 117
Query: 72 VYPGTPAAAE--LKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQR 121
V G A + ++ D++ ++ + A + +++ + I R
Sbjct: 118 VTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRNTKGRVRFMIGR 169
>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ
domain, PDZ2, acetylation, cell projection, membrane,
polymorphism; NMR {Homo sapiens}
Length = 98
Score = 46.2 bits (110), Expect = 2e-07
Identities = 14/87 (16%), Positives = 28/87 (32%), Gaps = 4/87 (4%)
Query: 41 TVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAA-AELKRGDIIRKIGDYDSRDL 99
+K+ +G + I V P +PA + L+ D I ++
Sbjct: 12 LCTMKKGPS--GYGFNLHSDKS-KPGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGK 68
Query: 100 RHKDATNFFQSSDTSISLGIQRNPPGE 126
+H D + ++ L + E
Sbjct: 69 QHGDVVSAIRAGGDETKLLVVDRETDE 95
>2ego_A General receptor for phosphoinositides 1- associated scaffold
protein; PDZ domain, ligand-free, protein binding; 1.80A
{Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A
Length = 96
Score = 45.8 bits (109), Expect = 3e-07
Identities = 14/89 (15%), Positives = 36/89 (40%), Gaps = 9/89 (10%)
Query: 41 TVVIKRPNRHHSWGLRIAG-------GCDLDSPIVITKVYPGTPAA-AELKRGDIIRKIG 92
+ +++ + ++G I ++ + +V+ +PA A L GD I +
Sbjct: 7 VLTLEK-GDNQTFGFEIQTYGLHHREEQRVEMVTFVARVHESSPAQLAGLTPGDTIASVN 65
Query: 93 DYDSRDLRHKDATNFFQSSDTSISLGIQR 121
+ +RH++ + ++S + L
Sbjct: 66 GLNVEGIRHREIVDIIKASGNVLRLETLY 94
>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding,
nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens}
PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A
Length = 139
Score = 46.6 bits (110), Expect = 4e-07
Identities = 24/105 (22%), Positives = 37/105 (35%), Gaps = 14/105 (13%)
Query: 34 QPHQNTFTVVIKRPNRHHSWGLRIAGGCD------------LDSPIVITKVYPGTPAAAE 81
Q + R + G I GG D D I +T+V G PA
Sbjct: 21 QSMVQRVEIHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIA 80
Query: 82 -LKRGDIIRKIGDYDSRDLRHKDATNFF-QSSDTSISLGIQRNPP 124
L+ GD I ++ +D + H A + S+ + L + R
Sbjct: 81 GLQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLVTRQSL 125
>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper
chaperone for superoxide dismutase, neuronal adaptor,
protein transport; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 90
Score = 45.1 bits (107), Expect = 5e-07
Identities = 16/87 (18%), Positives = 32/87 (36%), Gaps = 8/87 (9%)
Query: 34 QPHQNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAA-AELKRGDIIRKIG 92
+ N TV+I+RP+ + G + G +I + G A ++ G I +I
Sbjct: 7 ETMGNVTTVLIRRPDLRYQLGFSVQNG-------IICSLMRGGIAERGGVRVGHRIIEIN 59
Query: 93 DYDSRDLRHKDATNFFQSSDTSISLGI 119
H+ + ++ I +
Sbjct: 60 GQSVVATPHEKIVHILSNAVGEIHMKT 86
>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo
sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A
Length = 91
Score = 45.3 bits (108), Expect = 5e-07
Identities = 14/82 (17%), Positives = 32/82 (39%), Gaps = 4/82 (4%)
Query: 41 TVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAA-AELKRGDIIRKIGDYDSRDL 99
+++ +G + G I V PG+PA A L GD + ++ +
Sbjct: 6 LCCLEKGPN--GYGFHLHGE-KGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKE 62
Query: 100 RHKDATNFFQSSDTSISLGIQR 121
H+ + +++ ++ L +
Sbjct: 63 THQQVVSRIRAALNAVRLLVVD 84
>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm,
phosphoprotein, transport protein, CAsp; 2.60A {Homo
sapiens} PDB: 2eej_A
Length = 91
Score = 44.6 bits (106), Expect = 8e-07
Identities = 15/88 (17%), Positives = 34/88 (38%), Gaps = 4/88 (4%)
Query: 41 TVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAA-AELKRGDIIRKIGDYDSRDL 99
+ + + +G + I +V G PA A L+ D+I ++ + D
Sbjct: 6 LCRLAKGE--NGYGFHLNAIRG-LPGSFIKEVQKGGPADLAGLEDEDVIIEVNGVNVLDE 62
Query: 100 RHKDATNFFQSSDTSISLGIQRNPPGEK 127
++ + QSS +++L + +
Sbjct: 63 PYEKVVDRIQSSGKNVTLLVCGKKAQDT 90
>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 126
Score = 45.3 bits (107), Expect = 8e-07
Identities = 18/86 (20%), Positives = 31/86 (36%), Gaps = 1/86 (1%)
Query: 43 VIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAA-AELKRGDIIRKIGDYDSRDLRH 101
+ + + G + + I + +V G PA A L GD I K+ +
Sbjct: 39 FSYKDEENGNRGGKQRNRLEPMDTIFVKQVKEGGPAFEAGLCTGDRIIKVNGESVIGKTY 98
Query: 102 KDATNFFQSSDTSISLGIQRNPPGEK 127
Q+SDT++ L + G
Sbjct: 99 SQVIALIQNSDTTLELSVMPKDSGPS 124
>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus
norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A
3o5n_A*
Length = 109
Score = 44.8 bits (106), Expect = 9e-07
Identities = 12/106 (11%), Positives = 33/106 (31%), Gaps = 12/106 (11%)
Query: 30 GKPAQPHQNTFTVVIKRPN----------RHHSWGLRIAGGCDLDSPIVITKVYPGTPAA 79
G + T ++ K+ + + + + + V G A
Sbjct: 1 GSDYIIKEKT-VLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAW 59
Query: 80 -AELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPP 124
A L+ GD + ++ + + H+ N + ++ + +
Sbjct: 60 RAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMVTR 105
>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A
{Homo sapiens}
Length = 96
Score = 44.6 bits (106), Expect = 9e-07
Identities = 16/91 (17%), Positives = 37/91 (40%), Gaps = 6/91 (6%)
Query: 41 TVVIKRPNRHHSWGLRIAGG--CDLDSPIVITKVYPGTPAA-AELKRGDIIRKIGDYDSR 97
+ +++ +G + D + +V PG PA A ++ GD + +
Sbjct: 6 CLHLEKGP--QGFGFLLREEKGLDGRPGQFLWEVDPGLPAKKAGMQAGDRLVAVAGESVE 63
Query: 98 DLRHKDATNFFQSSDTSISLGIQRNPPGEKK 128
L H++ + Q + +SL + P +++
Sbjct: 64 GLGHEETVSRIQGQGSCVSLTVVD-PEADRE 93
>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil,
PDZ, guanine-nucleotide releasing factor,
phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Length = 132
Score = 45.3 bits (107), Expect = 1e-06
Identities = 15/115 (13%), Positives = 37/115 (32%), Gaps = 12/115 (10%)
Query: 21 QALIPTRKSGKPAQPHQNTFTVVIKRPN----------RHHSWGLRIAGGCDLDSPIVIT 70
Q + R SG + T ++ K+ + + + + +
Sbjct: 12 QDPLVPRGSGSDYIIKEKT-VLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLE 70
Query: 71 KVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPP 124
V G A A L+ GD + ++ + + H+ N + ++ + +
Sbjct: 71 SVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMVTR 125
>3k50_A Putative S41 protease; structural genomics, joint center for
structural genomics, JCSG, protein structure initiative;
2.00A {Bacteroides fragilis nctc 9343}
Length = 403
Score = 47.1 bits (112), Expect = 1e-06
Identities = 17/91 (18%), Positives = 25/91 (27%), Gaps = 1/91 (1%)
Query: 53 WGLRIAGGCDLDSPIVITKVYPGTPAA-AELKRGDIIRKIGDYDSRDLRHKDATNFFQSS 111
+ L D +I+ V PG+PA A L+RG I + +
Sbjct: 78 YTLYKVLDNDTAYNALISYVVPGSPAEEAGLQRGHWIMMMNGDYITKKVESELLQGSTRQ 137
Query: 112 DTSISLGIQRNPPGEKKAASGSRSVTPLPIV 142
GE T +P
Sbjct: 138 LQIGVYKEVVGEDGEVTGGVVPIGETTMPAS 168
>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain,
protein, acetylation, cell projection, disease mutation,
membrane; NMR {Homo sapiens}
Length = 128
Score = 45.2 bits (107), Expect = 1e-06
Identities = 14/87 (16%), Positives = 28/87 (32%), Gaps = 4/87 (4%)
Query: 41 TVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAA-AELKRGDIIRKIGDYDSRDL 99
+K+ +G + I V P +PA + L+ D I ++
Sbjct: 12 LCTMKKGPS--GYGFNLHSDKS-KPGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGK 68
Query: 100 RHKDATNFFQSSDTSISLGIQRNPPGE 126
+H D + ++ L + E
Sbjct: 69 QHGDVVSAIRAGGDETKLLVVDRETDE 95
>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics
consortium, SGC, protein BIN; 1.30A {Homo sapiens}
Length = 93
Score = 44.3 bits (105), Expect = 1e-06
Identities = 14/93 (15%), Positives = 31/93 (33%), Gaps = 9/93 (9%)
Query: 38 NTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAA--AELKRGDIIRKIGDYD 95
+ + + + G I I++ ++ G A + GD +R++
Sbjct: 4 SVKIIRLVKNRE--PLGATIKKDEQ-TGAIIVARIMRGGAADRSGLIHVGDELREVNGIP 60
Query: 96 SRDLRHKDATNFFQSSDTSISLGI----QRNPP 124
D R ++ S +I+ I + P
Sbjct: 61 VEDKRPEEIIQILAQSQGAITFKIIPGSKEETP 93
>3qe1_A Sorting nexin-27, G protein-activated inward RECT potassium channel
3 chimera; PDZ domain, PDZ binding, GIRK3 regulation,
early endosomes; 1.68A {Rattus norvegicus} PDB: 3qdo_A
3qgl_A
Length = 107
Score = 44.3 bits (105), Expect = 1e-06
Identities = 16/100 (16%), Positives = 33/100 (33%), Gaps = 15/100 (15%)
Query: 41 TVVIKRPNRHHSWGLRIAGGCD------------LDSPIVITKVYPGTPAA-AELKRGDI 87
V I + +G + G ++ V PG A A +++GD
Sbjct: 9 VVRIVKSE--SGYGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLPGGAADRAGVRKGDR 66
Query: 88 IRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPPGEK 127
I ++ + HK + ++ + + L + K
Sbjct: 67 ILEVNGVNVEGATHKQVVDLIRAGEKELILTVLSVESESK 106
>2pzd_A Serine protease HTRA2; PDZ domain, apoptosis, mitochondria, peptid
module, hydrolase; 2.75A {Homo sapiens} SCOP: b.36.1.4
Length = 113
Score = 43.8 bits (104), Expect = 2e-06
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 10/75 (13%)
Query: 52 SWGLRIAGGCDLDSPIVITKVYPGTPAA-AELKRGDIIRKIGD---YDSRDLRHKDATNF 107
LR D+ ++I KV G+PA A L+ GD+I IG+ ++ D+ T
Sbjct: 22 ELQLREPSFPDVQHGVLIHKVILGSPAHRAGLRPGDVILAIGEQMVQNAEDVYEAVRTQ- 80
Query: 108 FQSSDTSISLGIQRN 122
+ +++ I+R
Sbjct: 81 -----SQLAVQIRRG 90
>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein;
PDZ domain, cytoplasm, membrane, polymorphism, protein
binding; 2.70A {Homo sapiens}
Length = 104
Score = 42.8 bits (101), Expect = 5e-06
Identities = 17/101 (16%), Positives = 38/101 (37%), Gaps = 13/101 (12%)
Query: 25 PTRKSGKPAQPHQNTFTVVIKRPNRHHSWGLRIAGG-------CDLDSPIVITKVYPGTP 77
+Q V +++ + ++G I C + +I K+ +P
Sbjct: 6 SGLSDFSWSQRK----LVTVEKQDNE-TFGFEIQSYRPQNQNACSSEMFTLICKIQEDSP 60
Query: 78 A-AAELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISL 117
A A L+ GD++ I + +K + +SS +++
Sbjct: 61 AHCAGLQAGDVLANINGVSTEGFTYKQVVDLIRSSGNLLTI 101
>2p3w_A Probable serine protease HTRA3; PDZ domain, phage derived high
affinity ligand, protein BIND; 1.70A {Homo sapiens}
Length = 112
Score = 42.3 bits (100), Expect = 7e-06
Identities = 16/75 (21%), Positives = 31/75 (41%), Gaps = 10/75 (13%)
Query: 52 SWGLRIAGGCDLDSPIVITKVYPGTPAA-AELKRGDIIRKIGD---YDSRDLRHKDATNF 107
++ S I + +V P +P+ ++ GDII K+ DS +L+ T
Sbjct: 22 ELKASNPDFPEVSSGIYVQEVAPNSPSQRGGIQDGDIIVKVNGRPLVDSSELQEAVLTE- 80
Query: 108 FQSSDTSISLGIQRN 122
+ + L ++R
Sbjct: 81 -----SPLLLEVRRG 90
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight
junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A
3lh5_A
Length = 391
Score = 44.4 bits (104), Expect = 7e-06
Identities = 25/119 (21%), Positives = 46/119 (38%), Gaps = 3/119 (2%)
Query: 41 TVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAA-AELKRGDIIRKIGDYDSRDL 99
++ + + + S GLR+AGG D I + V +PAA L+ GD I ++ + D ++
Sbjct: 9 SMKLVKFRKGDSVGLRLAGGND--VGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNI 66
Query: 100 RHKDATNFFQSSDTSISLGIQRNPPGEKKAASGSRSVTPLPIVDYCQKESKASSASMSV 158
++A F + I + V + + K S +S
Sbjct: 67 IREEAVLFLLDLPKGEEVTILAQKKKDVYRRIVESDVGDSFYIRTHFEYEKESPYGLSF 125
>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain, structural
genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP:
b.36.1.1
Length = 96
Score = 42.0 bits (99), Expect = 9e-06
Identities = 20/98 (20%), Positives = 33/98 (33%), Gaps = 10/98 (10%)
Query: 29 SGKPAQPHQNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAAAELKRGDII 88
SG Q T+ I + + +G IA V + L GD+I
Sbjct: 3 SGSSGQA--ELMTLTIVKGAQ--GFGFTIADS--PTGQRVKQILDIQ--GCPGLCEGDLI 54
Query: 89 RKIGDYDSRDLRHKDATNFFQSSDT--SISLGIQRNPP 124
+I + ++L H + + + SL I R
Sbjct: 55 VEINQQNVQNLSHTEVVDILKDCPIGSETSLIIHRGSG 92
>3gge_A PDZ domain-containing protein GIPC2; structural genomics,
structural genomics consort protein binding; 2.60A {Homo
sapiens}
Length = 95
Score = 41.6 bits (98), Expect = 1e-05
Identities = 15/89 (16%), Positives = 24/89 (26%), Gaps = 6/89 (6%)
Query: 38 NTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAA--AELKRGDIIRKIGDYD 95
V + + S GL I I ++ G + GD I I +
Sbjct: 5 IEKEVNVYKSED--SLGLTITDNGV--GYAFIKRIKDGGVIDSVKTICVGDHIESINGEN 60
Query: 96 SRDLRHKDATNFFQSSDTSISLGIQRNPP 124
RH D + ++ P
Sbjct: 61 IVGWRHYDVAKKLKELKKEELFTMKLIEP 89
>2l97_A HTRA, putative serine protease; HTRA-PDZ, protein binding; NMR
{Streptococcus pneumoniae}
Length = 134
Score = 42.6 bits (101), Expect = 1e-05
Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 8/65 (12%)
Query: 67 IVITKVYPGTPAAAELKRGDIIRKIGD---YDSRDLRHKDATNFFQSSDTSISLGIQRNP 123
+++ V PA L++ D+I K+ D S DL+ S +I + RN
Sbjct: 59 VIVRSVQSNMPANGHLEKYDVITKVDDKEIASSTDLQSALYN---HSIGDTIKITYYRN- 114
Query: 124 PGEKK 128
G+++
Sbjct: 115 -GKEE 118
>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP:
b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A
Length = 82
Score = 41.1 bits (97), Expect = 1e-05
Identities = 13/78 (16%), Positives = 27/78 (34%), Gaps = 9/78 (11%)
Query: 41 TVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAA-AELKRGDIIRKIGDYDSRDL 99
T+ + + + G G IT + + AA L I +I + L
Sbjct: 7 TITMHK-DSTGHVGFIFKNG-------KITSIVKDSSAARNGLLTEHNICEINGQNVIGL 58
Query: 100 RHKDATNFFQSSDTSISL 117
+ + +S T +++
Sbjct: 59 KDSQIADILSTSGTVVTI 76
>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 118
Score = 41.3 bits (96), Expect = 2e-05
Identities = 17/111 (15%), Positives = 40/111 (36%), Gaps = 4/111 (3%)
Query: 29 SGKPAQPHQNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIV-ITKVYPGTPAAAE---LKR 84
+ P+ T + + + + + V + +V + +
Sbjct: 7 GVQDQLPYSVTLISMPATTECRRGFSVTVESASSNYATTVQVKEVNRMHISPNNRNAIHP 66
Query: 85 GDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPPGEKKAASGSRS 135
GD I +I R LR ++ + + + ++ L I+ +P ++ SG S
Sbjct: 67 GDRILEINGTPVRTLRVEEVEDAIKQTSQTLQLLIEHDPVPQRLDQSGPSS 117
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell
adhesion; 2.90A {Homo sapiens}
Length = 468
Score = 43.0 bits (100), Expect = 3e-05
Identities = 25/119 (21%), Positives = 46/119 (38%), Gaps = 3/119 (2%)
Query: 41 TVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAA-AELKRGDIIRKIGDYDSRDL 99
++ + + + S GLR+AGG D I + V +PAA L+ GD I ++ + D ++
Sbjct: 1 SMKLVKFRKGDSVGLRLAGGND--VGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNI 58
Query: 100 RHKDATNFFQSSDTSISLGIQRNPPGEKKAASGSRSVTPLPIVDYCQKESKASSASMSV 158
++A F + I + V + + K S +S
Sbjct: 59 IREEAVLFLLDLPKGEEVTILAQKKKDVYRRIVESDVGDSFYIRTHFEYEKESPYGLSF 117
>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding;
2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A
1u37_A 1u38_A 2yt8_A
Length = 388
Score = 42.7 bits (99), Expect = 3e-05
Identities = 17/80 (21%), Positives = 28/80 (35%), Gaps = 8/80 (10%)
Query: 41 TVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAAAE-LKRGDIIRKIGDYDSRDL 99
TV+IKRP+ + G + G I + G A ++ G I +I
Sbjct: 298 TVLIKRPDLKYQLGFSVQNGI-------ICSLMRGGIAERGGVRVGHRIIEINGQSVVAT 350
Query: 100 RHKDATNFFQSSDTSISLGI 119
H+ +S I +
Sbjct: 351 AHEKIVQALSNSVGEIHMKT 370
Score = 40.0 bits (92), Expect = 3e-04
Identities = 11/80 (13%), Positives = 24/80 (30%), Gaps = 4/80 (5%)
Query: 46 RPNRHHSWGLRIAGG--CDLDSPIVITKVYPGTPAA--AELKRGDIIRKIGDYDSRDLRH 101
++ G+ + + +++ + G PAA +L GD I I L
Sbjct: 211 EKHKGEILGVVVVESGWGSILPTVILANMMNGGPAARSGKLSIGDQIMSINGTSLVGLPL 270
Query: 102 KDATNFFQSSDTSISLGIQR 121
+ + +
Sbjct: 271 ATCQGIIKGLKNQTQVKLNI 290
>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell
projection, disease mutation, membrane, phosphoprotein,
polymorphism; NMR {Homo sapiens}
Length = 216
Score = 42.1 bits (98), Expect = 4e-05
Identities = 14/101 (13%), Positives = 28/101 (27%), Gaps = 4/101 (3%)
Query: 41 TVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAA-AELKRGDIIRKIGDYDSRDL 99
+K+ +G + I V P +PA + L+ D I ++
Sbjct: 12 LCTMKKGPS--GYGFNLHSDKS-KPGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGK 68
Query: 100 RHKDATNFFQSSDTSISLGIQRNPPGEKKAASGSRSVTPLP 140
+H D + ++ L + E
Sbjct: 69 QHGDVVSAIRAGGDETKLLVVDRETDEFFKKCRVIPSQEHL 109
>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1
protein, structural genomics, riken structural
genomics/proteomics initiative; NMR {Mus musculus} SCOP:
b.36.1.1
Length = 113
Score = 39.7 bits (93), Expect = 6e-05
Identities = 13/101 (12%), Positives = 30/101 (29%), Gaps = 5/101 (4%)
Query: 25 PTRKSGKPAQPHQNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAA--AEL 82
R T +V R G + ++I+++ G A L
Sbjct: 11 DERVYESIGHYGGETVKIVRIEKARDIPLGATVRNE---MDSVIISRIVKGGAAEKSGLL 67
Query: 83 KRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNP 123
GD + +I + R + + +++ + +
Sbjct: 68 HEGDEVLEINGIEIRGKDVNEVFDLLSDMHGTLTFVLIPSS 108
>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation,
structural genomics, structural genomics consortium,
SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A
Length = 90
Score = 39.2 bits (92), Expect = 8e-05
Identities = 14/78 (17%), Positives = 31/78 (39%), Gaps = 4/78 (5%)
Query: 41 TVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAA-AELKRGDIIRKIGDYDSRDL 99
+++ + +G + I V PG+PAA + L+ D + ++ + L
Sbjct: 7 LCHLRKGPQ--GYGFNLHSDKS-RPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGL 63
Query: 100 RHKDATNFFQSSDTSISL 117
RH + ++ + L
Sbjct: 64 RHAEVVASIKAREDEARL 81
>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta
protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4
b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A*
1sot_A 1soz_A 1vcw_A 2r3y_A
Length = 318
Score = 41.0 bits (97), Expect = 9e-05
Identities = 16/72 (22%), Positives = 31/72 (43%), Gaps = 9/72 (12%)
Query: 57 IAGGCDLDSP--IVITKVYPGTPAA-AELKRGDIIRKIGD---YDSRDLRHKDATNFFQS 110
A G +D IV+ +V P PAA A ++ D+I + + + + + A
Sbjct: 234 HAQGGGIDQLQGIVVNEVSPDGPAANAGIQVNDLIISVDNKPAISALETMDQVAE---IR 290
Query: 111 SDTSISLGIQRN 122
+ I + + R+
Sbjct: 291 PGSVIPVVVMRD 302
>2kl1_A YLBL protein; structure genomics, structural genomics, PSI-2,
protein STRU initiative, northeast structural genomics
consortium; NMR {Geobacillus thermodenitrificans}
Length = 94
Score = 38.8 bits (91), Expect = 1e-04
Identities = 13/75 (17%), Positives = 26/75 (34%), Gaps = 10/75 (13%)
Query: 63 LDSP--IVITKVYPGTPAAAELKRGDIIRKIGD---YDSRDLRHKDATNFFQSSDTSISL 117
++ + + V P PAA L+ GD I I S + + + + +
Sbjct: 1 MNEAKGVYVMSVLPNMPAAGRLEAGDRIAAIDGQPINTSEQIVSYVRE---KQAGDRVRV 57
Query: 118 GIQRNPPGEKKAASG 132
R+ ++ A
Sbjct: 58 TFIRD--RKQHEAEL 70
>2hga_A Conserved protein MTH1368; GFT structural genomics, PSI, protein
structure initiative; NMR
{Methanothermobacterthermautotrophicus} SCOP: b.36.1.6
Length = 125
Score = 39.5 bits (92), Expect = 1e-04
Identities = 13/59 (22%), Positives = 21/59 (35%), Gaps = 6/59 (10%)
Query: 67 IVITKVYPGTPAAAELKRGDIIRKIGDY---DSRDLRHKDATNFFQSSDTSISLGIQRN 122
+ I V PG+PA+ L G +I I + T S I++ +
Sbjct: 27 VQIDSVVPGSPASKVLTPGLVIESINGMPTSNLTTYSAALKT---ISVGEVINITTDQG 82
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone,
hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A
4a9g_A
Length = 436
Score = 40.7 bits (96), Expect = 1e-04
Identities = 26/113 (23%), Positives = 43/113 (38%), Gaps = 22/113 (19%)
Query: 57 IAGGCDLDSP--IVITKVYPGTPAA-AELKRGDIIRKIGD---YDSRDLRHKDATNFFQS 110
IA +LD +++V PG+ +A A +K GDII + +LR + AT
Sbjct: 253 IAKAFNLDVQRGAFVSEVLPGSGSAKAGVKAGDIITSLNGKPLNSFAELRSRIAT---TE 309
Query: 111 SDTSISLGIQRN-------------PPGEKKAASGSRSVTPLPIVDYCQKESK 150
T + LG+ RN A + ++ + D K+
Sbjct: 310 PGTKVKLGLLRNGKPLEVEVTLDTSTSSSASAEMITPALEGATLSDGQLKDGG 362
Score = 39.2 bits (92), Expect = 4e-04
Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
Query: 67 IVITKVYPGTPAA-AELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRN 122
I I +V G+PAA A L++ D+I + + + + I+L I R
Sbjct: 365 IKIDEVVKGSPAAQAGLQKDDVIIGVNRDRVNSI--AEMRKVLAAKPAIIALQIVRG 419
>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase;
2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A
Length = 451
Score = 40.4 bits (95), Expect = 2e-04
Identities = 15/73 (20%), Positives = 33/73 (45%), Gaps = 10/73 (13%)
Query: 57 IAGGCDLDSPI---VITKVYPGTPAA-AELKRGDIIRKIGD---YDSRDLRHKDATNFFQ 109
+A ++++V P +PA A LK GDII +I D + ++ +
Sbjct: 271 LAQAMGYPEDFQGALVSQVNPNSPAELAGLKAGDIITQINDTKITQATQVKTTISL---L 327
Query: 110 SSDTSISLGIQRN 122
+++ + ++R+
Sbjct: 328 RVGSTVKIIVERD 340
Score = 38.8 bits (91), Expect = 7e-04
Identities = 9/57 (15%), Positives = 18/57 (31%), Gaps = 3/57 (5%)
Query: 67 IVITKVYPGTPAA-AELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRN 122
+ + + A ++ GDII D+ K Q + + + R
Sbjct: 388 VQVVGASENSAGWRAGIRPGDIIISANKKPVTDV--KSLQTIAQEKKKELLVQVLRG 442
>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation,
binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4
b.47.1.1
Length = 325
Score = 40.3 bits (95), Expect = 2e-04
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 10/75 (13%)
Query: 52 SWGLRIAGGCDLDSPIVITKVYPGTPAA-AELKRGDIIRKIGD---YDSRDLRHKDATNF 107
LR D+ ++I KV G+PA A L+ GD+I IG+ ++ D+ T
Sbjct: 243 ELQLREPSFPDVQHGVLIHKVILGSPAHRAGLRPGDVILAIGEQMVQNAEDVYEAVRTQ- 301
Query: 108 FQSSDTSISLGIQRN 122
+ +++ I+R
Sbjct: 302 -----SQLAVQIRRG 311
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease,
trypsin, chaperone, PDZ, ATP-independent,
temperature-regulated, periplasm; 2.80A {Escherichia
coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A
3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A
Length = 448
Score = 40.4 bits (95), Expect = 2e-04
Identities = 17/72 (23%), Positives = 33/72 (45%), Gaps = 9/72 (12%)
Query: 57 IAGGCDLDSP--IVITKVYPGTPAA-AELKRGDIIRKIGD---YDSRDLRHKDATNFFQS 110
+A +D+ +++V P + AA A +K GD+I + LR + T
Sbjct: 276 LAKAMKVDAQRGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISSFAALRAQVGT---MP 332
Query: 111 SDTSISLGIQRN 122
+ ++LG+ R+
Sbjct: 333 VGSKLTLGLLRD 344
Score = 38.8 bits (91), Expect = 7e-04
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 67 IVITKVYPGTPAA-AELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRN 122
+V+ V GTPAA LK+GD+I +++ + S + ++L IQR
Sbjct: 385 VVVNNVKTGTPAAQIGLKKGDVIIGANQQAVKNI--AELRKVLDSKPSVLALNIQRG 439
>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB:
3nzi_A 3nwu_A 2ytw_A 2joa_A
Length = 332
Score = 39.9 bits (94), Expect = 2e-04
Identities = 16/75 (21%), Positives = 28/75 (37%), Gaps = 10/75 (13%)
Query: 52 SWGLRIAGGCDLDSPIVITKVYPGTPAA-AELKRGDIIRKIGD---YDSRDLRHKDATNF 107
R D+ S I +V P TPA LK D+I I + D+
Sbjct: 241 ELKDRHRDFPDVISGAYIIEVIPDTPAEAGGLKENDVIISINGQSVVSANDVSDVIKRE- 299
Query: 108 FQSSDTSISLGIQRN 122
+++++ ++R
Sbjct: 300 -----STLNMVVRRG 309
>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell
membrane, hydrolase, membrane, protease, serine
protease, transmembrane; NMR {Bacillus subtilis}
Length = 91
Score = 37.2 bits (87), Expect = 3e-04
Identities = 12/69 (17%), Positives = 27/69 (39%), Gaps = 8/69 (11%)
Query: 67 IVITKVYPGTPAAAELKRGDIIRKIGD---YDSRDLRHKDATNFFQSSDTSISLGIQRNP 123
I + V PA +++ GD I + L ++ + + ++L I+R
Sbjct: 3 IYASSVVENMPAKGKIEVGDKIISADGKNYQSAEKLIDYISS---KKAGDKVTLKIERE- 58
Query: 124 PGEKKAASG 132
++K +
Sbjct: 59 -EKEKRVTL 66
>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein
1; structural genomi consortium, SGC, ATP-binding, cell
junction; 1.60A {Homo sapiens}
Length = 88
Score = 37.3 bits (87), Expect = 4e-04
Identities = 18/88 (20%), Positives = 33/88 (37%), Gaps = 6/88 (6%)
Query: 39 TFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAAAELKRGDIIRKIGDYDSRD 98
TV I + +G IA + ++ P + LK GD+I ++ + +
Sbjct: 4 LITVHIVKGPM--GFGFTIADS-PGGGGQRVKQIVDS-PRSRGLKEGDLIVEVNKKNVQA 59
Query: 99 LRHKDATNFFQSSDT--SISLGIQRNPP 124
L H + S ++L +QR
Sbjct: 60 LTHNQVVDMLVESPKGSEVTLLVQRQTR 87
>3i18_A LMO2051 protein; alpha-beta protein, structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium; 1.70A {Listeria monocytogenes} PDB:
2kjk_A 3i1e_A
Length = 100
Score = 37.3 bits (87), Expect = 4e-04
Identities = 11/69 (15%), Positives = 25/69 (36%), Gaps = 8/69 (11%)
Query: 67 IVITKVYPGTPAAAELKRGDIIRKIGD---YDSRDLRHKDATNFFQSSDTSISLGIQRNP 123
+ + V PAA L GD+I +I S++ + + ++ + +
Sbjct: 9 VYVMSVKDDVPAADVLHAGDLITEIDGNAFKSSQEFIDYIHS---KKVGDTVKINYKHG- 64
Query: 124 PGEKKAASG 132
+ + A
Sbjct: 65 -DKNEQADI 72
>3id1_A Regulator of sigma E protease; hydrolase, cell inner membrane, cell
membrane, membrane, metal-binding, metalloprotease,
transmembrane; 1.67A {Escherichia coli k-12} PDB: 2zpl_A
Length = 95
Score = 37.3 bits (86), Expect = 4e-04
Identities = 8/62 (12%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
Query: 68 VITKVYPGTPAA-AELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRNPPGE 126
V+ ++ + AA A++ G ++ + ++ D + D S ++ + +
Sbjct: 5 VVGEIAANSIAAEAQIAPGTELKAVDGIETPDWDAVRLQLVDKIGDESTTITVAPFGSDQ 64
Query: 127 KK 128
++
Sbjct: 65 RR 66
>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone,
DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}
Length = 345
Score = 38.8 bits (91), Expect = 6e-04
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 9/72 (12%)
Query: 57 IAGGCDLDSP--IVITKVYPGTPAA-AELKRGDIIRKIGD---YDSRDLRHKDATNFFQS 110
IA +LD +++V PG+ +A A +K GDII + +LR + AT
Sbjct: 253 IAKAFNLDVQRGAFVSEVLPGSGSAKAGVKAGDIITSLNGKPLNSFAELRSRIAT---TE 309
Query: 111 SDTSISLGIQRN 122
T + LG+ RN
Sbjct: 310 PGTKVKLGLLRN 321
>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein
3; structural genomics consortium, SGC, PDZ domain,
signaling P; 1.60A {Homo sapiens}
Length = 113
Score = 36.0 bits (83), Expect = 0.002
Identities = 21/113 (18%), Positives = 40/113 (35%), Gaps = 10/113 (8%)
Query: 29 SGKPAQPHQNTFTVVIKRPNRHHSWGLRIAGGCDLDSPI-VITKVYPGTPAAAELKRGDI 87
+ T+ + + + +G IA DSP K+ + L++GDI
Sbjct: 3 MATLYKKAGLLVTIPLIKGPK--GFGFAIA-----DSPTGQKVKMILDSQWCQGLQKGDI 55
Query: 88 IRKIGDYDSRDLRHKDATNFFQS--SDTSISLGIQRNPPGEKKAASGSRSVTP 138
I++I + ++L H + + L I R P + S +
Sbjct: 56 IKEIYHQNVQNLTHLQVVEVLKQFPVGADVPLLILRGGPPSPTKTAKMGSGSG 108
>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics,
PSI, protein structure initiative; 2.00A {Mycobacterium
tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A
Length = 324
Score = 35.0 bits (81), Expect = 0.011
Identities = 10/39 (25%), Positives = 17/39 (43%), Gaps = 4/39 (10%)
Query: 68 VITKVYPGTPAA-AELKRGDIIRKIGD---YDSRDLRHK 102
I +V G AA A + +G ++ K+ D + L
Sbjct: 245 KIVEVVAGGAAANAGVPKGVVVTKVDDRPINSADALVAA 283
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.8 bits (79), Expect = 0.017
Identities = 42/242 (17%), Positives = 67/242 (27%), Gaps = 67/242 (27%)
Query: 3 LV--NVNTNSKSLDALTSTNQALIPTRKSGKPAQPHQNTFTVVIKRPNR----HHSWGL- 55
LV NV N+K+ +A + + L+ TR Q T + HHS L
Sbjct: 248 LVLLNVQ-NAKAWNAFNLSCKILLTTRFK-------QVTDFLSAATTTHISLDHHSMTLT 299
Query: 56 ---------RIAGGCDLDSPIVITKVYPGTPA-AAELKRGDIIRKIGDYDSRDLRHKDAT 105
+ D P + P + AE R + D +H +
Sbjct: 300 PDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATW--DN----WKHVNCD 353
Query: 106 NFFQSSDTSISLGIQRNPPGEKKAASGSRSV----TPLP------------------IVD 143
T I + P E + SV +P +V+
Sbjct: 354 KL----TTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVN 409
Query: 144 YCQKESKASSASMSVVNSFHD-FLD-HQH------VHRAQAVASPFELSSEHDLNYVIKE 195
K S S +L+ +HR V + + D + +I
Sbjct: 410 KLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHR-SIVDH-YNIPKTFDSDDLIPP 467
Query: 196 QL 197
L
Sbjct: 468 YL 469
>2zpm_A Regulator of sigma E protease; metalloproteinase, membrane protein,
PDZ domain, hydrolase, inner membrane, membrane,
metal-binding; HET: MLY MSE; 0.98A {Escherichia coli}
PDB: 3id2_A 3id3_A 3id4_A
Length = 91
Score = 31.7 bits (72), Expect = 0.034
Identities = 13/56 (23%), Positives = 22/56 (39%), Gaps = 2/56 (3%)
Query: 68 VITKVYPGTPAA-AELKRGDIIRKIGDYDSRDLRHKDATNFFQSSDTSISLGIQRN 122
V+ V P + A+ A L+ GD I + + S++L I+R
Sbjct: 7 VLENVQPNSAASXAGLQAGDRIVXVDGQPLTQWVTF-VMLVRDNPGXSLALEIERQ 61
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 32.3 bits (73), Expect = 0.097
Identities = 23/123 (18%), Positives = 45/123 (36%), Gaps = 33/123 (26%)
Query: 2 DLVNVNTNSKSLDALTSTNQALIPTRKSGKPAQPHQNTFTVVIKRPNRHHSWGLRIAGGC 61
L +N + A + +Q+ IP + K N F + + P HS
Sbjct: 385 SLYGLNLTLRKAKAPSGLDQSRIPFSER-KLK--FSNRF-LPVASP--FHS--------- 429
Query: 62 DLDSPIVITKVYPGTPAAAELKRGDIIRKIGDYDSRDLR----H-KDATNFFQSSDTSIS 116
L P A++L D+++ ++++D++ D ++ + SIS
Sbjct: 430 HLLVP------------ASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSD-LRVLSGSIS 476
Query: 117 LGI 119
I
Sbjct: 477 ERI 479
>1vzy_A 33 kDa chaperonin; chaperone, heat shock protein, crystal
engineering, molecular chaperone, redox-active center,
PSI; 1.97A {Bacillus subtilis} SCOP: d.193.1.1 g.81.1.1
Length = 291
Score = 28.3 bits (64), Expect = 1.5
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 3/33 (9%)
Query: 103 DATNFFQSS---DTSISLGIQRNPPGEKKAASG 132
D T + SS +S+ +G+ NP AA G
Sbjct: 142 DFTYYLVSSEQVPSSVGVGVLVNPDNTILAAGG 174
>1g87_A Endocellulase 9G; endoglucanase, cellulose binding domain, (ALPH
6-helix barrel, beta barrel, hydrolase; 1.60A
{Clostridium cellulolyticum} SCOP: a.102.1.2 b.2.2.2
PDB: 1ga2_A* 1k72_A* 1kfg_A*
Length = 614
Score = 27.6 bits (61), Expect = 3.2
Identities = 7/50 (14%), Positives = 12/50 (24%)
Query: 33 AQPHQNTFTVVIKRPNRHHSWGLRIAGGCDLDSPIVITKVYPGTPAAAEL 82
P + + + HSW + PG+ A
Sbjct: 107 CNPTPGVYYYQVGDGGKDHSWWGPAEVMQMERPSFKVDASKPGSAVCAST 156
>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor,
hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}
Length = 348
Score = 26.8 bits (60), Expect = 4.9
Identities = 11/71 (15%), Positives = 20/71 (28%), Gaps = 18/71 (25%)
Query: 67 IVITKVYPGTPAA------------AELKRGDIIRKIGD---YDSRDLRHKDATNFFQSS 111
+++ P PA L GDII + + DL
Sbjct: 253 VLVLDAPPSGPAGKAGLQSTKRDGYGRLVLGDIITSVNGTKVSNGSDLYRILDQ---CKV 309
Query: 112 DTSISLGIQRN 122
+++ + R
Sbjct: 310 GDEVTVEVLRG 320
>2afj_A Gene rich cluster, C9 gene; beta sandwich, gene regulation; NMR
{Mus musculus} SCOP: b.29.1.22
Length = 226
Score = 25.9 bits (56), Expect = 9.0
Identities = 12/50 (24%), Positives = 18/50 (36%), Gaps = 1/50 (2%)
Query: 51 HSWGLRIAGGCDL-DSPIVITKVYPGTPAAAELKRGDIIRKIGDYDSRDL 99
SWG I G S + YP P +L + + + D + L
Sbjct: 124 ESWGWDIGRGKLYHQSKGLEAPQYPAGPQGEQLVVPERLLVVLDMEEGTL 173
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.130 0.376
Gapped
Lambda K H
0.267 0.0749 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,979,307
Number of extensions: 167637
Number of successful extensions: 475
Number of sequences better than 10.0: 1
Number of HSP's gapped: 330
Number of HSP's successfully gapped: 191
Length of query: 201
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 112
Effective length of database: 4,216,824
Effective search space: 472284288
Effective search space used: 472284288
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (24.9 bits)