BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy12312
         (1045 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2CF5|A Chain A, Crystal Structures Of The Arabidopsis Cinnamyl Alcohol
           Dehydrogenases, Atcad5
 pdb|2CF6|A Chain A, Crystal Structures Of The Arabidopsis Cinnamyl Alcohol
           Dehydrogenases Atcad5
          Length = 357

 Score = 33.1 bits (74), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 33/136 (24%), Positives = 59/136 (43%), Gaps = 18/136 (13%)

Query: 302 DFCFQGDEARVKEYGEALDKVMVQGEEGMKFVPQLYAVPPEHVDEEY----KNPGCVERI 357
           D+    D+A++ E  ++LD V             +  VP  H  E Y    K  G +  +
Sbjct: 228 DYVIGSDQAKMSELADSLDYV-------------IDTVPVHHALEPYLSLLKLDGKLILM 274

Query: 358 ALGRCPLLWAQSLYILGRLLQHG-FLATGELDPLNRRLCSEKKPDVVVQVVILAEDADIQ 416
            +   PL +   L +LGR +  G F+ + +        C EK    +++VV +       
Sbjct: 275 GVINNPLQFLTPLLMLGRKVITGSFIGSMKETEEMLEFCKEKGLSSIIEVVKMDYVNTAF 334

Query: 417 EKLEQHDIYVQTISDV 432
           E+LE++D+  + + DV
Sbjct: 335 ERLEKNDVRYRFVVDV 350


>pdb|1FRD|A Chain A, Molecular Structure Of The Oxidized, Recombinant,
           Heterocyst (2fe-2s) Ferredoxin From Anabaena 7120
           Determined To 1.7 Angstroms Resolution
          Length = 98

 Score = 30.8 bits (68), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 15/39 (38%), Positives = 23/39 (58%)

Query: 902 VVENIVHKANQIFLEDQVRVNGDATLCCAKPKDEAYLKS 940
           VVE  V +++QIFL+D+    G A LC   P+    +K+
Sbjct: 53  VVEGEVDQSDQIFLDDEQMGKGFALLCVTYPRSNCTIKT 91


>pdb|2ZY2|A Chain A, Dodecameric L-Aspartate Beta-Decarboxylase
          Length = 544

 Score = 30.0 bits (66), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 1/32 (3%)

Query: 732 LLNLSPFEMKNLLHHILSGKEFAIS-SVGRGN 762
           L NLSPFE+K+ L  + SGK   +  + GRGN
Sbjct: 8   LANLSPFELKDELIKVASGKANRLMLNAGRGN 39


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.137    0.408 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,106,698
Number of Sequences: 62578
Number of extensions: 1164408
Number of successful extensions: 2358
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 2356
Number of HSP's gapped (non-prelim): 3
length of query: 1045
length of database: 14,973,337
effective HSP length: 109
effective length of query: 936
effective length of database: 8,152,335
effective search space: 7630585560
effective search space used: 7630585560
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)