Query psy12312
Match_columns 1045
No_of_seqs 276 out of 507
Neff 5.1
Searched_HMMs 46136
Date Fri Aug 16 15:51:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12312.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12312hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3635|consensus 100.0 5E-291 1E-295 2453.5 70.3 925 4-993 24-1150(1150)
2 PF00723 Glyco_hydro_15: Glyco 100.0 2.1E-46 4.4E-51 434.7 7.1 373 5-708 9-448 (448)
3 COG3387 SGA1 Glucoamylase and 100.0 7.8E-37 1.7E-41 365.0 24.6 322 11-382 254-608 (612)
4 TIGR01535 glucan_glucosid gluc 100.0 4E-36 8.7E-41 359.8 26.5 297 28-380 297-635 (648)
5 TIGR01577 oligosac_amyl oligos 100.0 6.2E-36 1.3E-40 359.9 23.8 297 13-378 267-613 (616)
6 KOG3635|consensus 99.4 9.4E-14 2E-18 163.8 4.1 60 986-1045 1089-1150(1150)
7 PF06202 GDE_C: Amylo-alpha-1, 98.1 0.00037 8.1E-09 80.6 23.5 291 28-372 32-369 (370)
8 COG3408 GDB1 Glycogen debranch 98.0 0.00087 1.9E-08 82.6 23.5 292 28-386 286-614 (641)
9 PF06824 DUF1237: Protein of u 97.1 0.0011 2.3E-08 77.5 7.8 308 28-376 46-423 (424)
10 PF00723 Glyco_hydro_15: Glyco 96.9 2.3E-05 5.1E-10 92.3 -8.8 129 219-396 194-323 (448)
11 PLN03005 beta-fructofuranosida 96.7 0.35 7.5E-06 57.9 24.2 336 6-379 91-522 (550)
12 PLN02973 beta-fructofuranosida 96.3 0.61 1.3E-05 56.0 22.8 340 6-388 113-549 (571)
13 COG3538 Uncharacterized conser 95.9 0.016 3.4E-07 65.9 7.1 119 221-379 304-423 (434)
14 PLN02703 beta-fructofuranosida 95.8 1.2 2.7E-05 53.9 21.8 78 289-388 501-581 (618)
15 PRK10137 alpha-glucosidase; Pr 91.7 13 0.00029 47.5 20.9 68 290-374 710-779 (786)
16 PF12899 Glyco_hydro_100: Alka 85.0 2.3 5E-05 50.2 7.4 73 289-380 360-435 (436)
17 TIGR01561 gde_arch glycogen de 76.8 80 0.0017 39.5 17.0 204 28-261 295-536 (575)
18 PRK13271 treA trehalase; Provi 56.7 2.7E+02 0.0059 35.0 15.9 97 290-394 455-552 (569)
19 PF04685 DUF608: Protein of un 55.9 17 0.00036 42.7 5.2 209 98-323 97-329 (365)
20 cd02889 SQCY Squalene cyclase 53.8 3.8E+02 0.0082 30.4 21.2 123 9-149 6-137 (348)
21 PRK13270 treF trehalase; Provi 40.4 3.5E+02 0.0077 33.9 13.3 80 290-378 464-546 (549)
22 TIGR01531 glyc_debranch glycog 38.1 1.6E+02 0.0034 40.6 10.3 114 235-374 1325-1460(1464)
23 cd00688 ISOPREN_C2_like This g 36.8 3.4E+02 0.0074 28.8 11.3 136 5-177 55-201 (300)
24 PF01204 Trehalase: Trehalase; 35.3 4.6E+02 0.0099 32.4 13.2 124 234-377 385-510 (512)
25 COG3459 Cellobiose phosphoryla 34.0 92 0.002 40.9 7.1 102 236-344 843-944 (1056)
26 KOG2047|consensus 34.0 35 0.00076 42.7 3.4 96 607-707 596-722 (835)
27 PF09432 THP2: Tho complex sub 33.4 72 0.0016 32.4 4.8 100 639-750 17-126 (132)
28 PF11305 DUF3107: Protein of u 31.3 58 0.0013 30.1 3.6 34 640-673 2-36 (74)
29 PF03200 Glyco_hydro_63: Manno 31.2 1.8E+02 0.0038 38.0 9.1 120 229-374 663-797 (801)
30 PF03632 Glyco_hydro_65m: Glyc 26.7 4.5E+02 0.0098 31.2 10.8 130 74-209 79-216 (370)
31 PF14853 Fis1_TPR_C: Fis1 C-te 26.1 1.1E+02 0.0024 26.3 4.2 28 295-322 3-30 (53)
32 PRK13272 treA trehalase; Provi 25.5 9.9E+02 0.021 30.0 13.7 81 289-377 454-535 (542)
33 PF07719 TPR_2: Tetratricopept 24.1 1.7E+02 0.0036 21.2 4.4 27 296-322 4-30 (34)
34 PLN02567 alpha,alpha-trehalase 23.7 9.4E+02 0.02 30.2 13.2 77 289-375 459-541 (554)
35 cd02892 SQCY_1 Squalene cyclas 23.5 1.6E+03 0.034 28.5 22.5 112 19-147 296-419 (634)
36 PF13374 TPR_10: Tetratricopep 22.7 1.7E+02 0.0037 22.0 4.4 29 295-323 4-32 (42)
37 PF13174 TPR_6: Tetratricopept 22.0 1.1E+02 0.0025 21.9 3.1 26 297-322 4-29 (33)
38 COG4801 Predicted acyltransfer 22.0 65 0.0014 35.9 2.5 46 295-344 121-167 (277)
No 1
>KOG3635|consensus
Probab=100.00 E-value=4.7e-291 Score=2453.48 Aligned_cols=925 Identities=60% Similarity=0.966 Sum_probs=857.0
Q ss_pred hhhhhhhhhccccCCCcccccCCC------chhHHHHHHHHHh--------------------cHHHHHHHHHHHHHHHh
Q psy12312 4 SRDKEALVSVLTDSLINLVPAQTH------LRTNVDTRLGFFI--------------------GRYSCVKLMRGLLMAMM 57 (1045)
Q Consensus 4 ~~~~~~~il~~Q~p~tGl~pAs~~------VRDa~yt~~Al~~--------------------l~~~A~k~mr~LL~~~m 57 (1045)
-|+|+++||.||||+||||||+++ ||||+|||.|+|+ ++++++|+|||||.|||
T Consensus 24 ~riV~qtil~~QnPvTgLfp~~~~~q~~awVRDnvYca~AvW~L~~AYrk~ad~DeDk~KayELeqs~VK~MRgiL~C~m 103 (1150)
T KOG3635|consen 24 YRIVKQTILCYQNPVTGLFPASKDFQKHAWVRDNVYCALAVWGLYLAYRKNADIDEDKAKAYELEQSCVKLMRGILECMM 103 (1150)
T ss_pred HHHHHHHHHHhcCCcceecccccccccccchhhhHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 378999999999999999999887 9999999999997 89999999999999999
Q ss_pred cchhhHHhhhccCCCCcccccccccCCCccccCCcccchhhhhHHHHHHHHHHHHHHcCCceeeCcchHHHHHHHHHHHH
Q psy12312 58 QQKHKVEQFKITQNPLDALHAKYHSATGETVVGDTEWGHLQIDAISLYLLILAQMTASGLQIVFCLDEVAFIQNLVFYIE 137 (1045)
Q Consensus 58 ~q~~kve~fk~~~~~~~~lh~kY~~~tg~pVvGn~aw~hlQlDa~gl~LlaL~qm~~sGl~ii~t~dev~fIqnLV~yie 137 (1045)
+|++|||.||..|++.++||+||+..||.+|+||+.|||+|+||+|+||+.|+||++|||+|+||.|||+||||||||||
T Consensus 104 rQadKVE~FK~~Qsp~dsLHsKf~~~Tg~~v~~d~~wgHLQiDavSLYLL~LaQMtaSGLqII~~~DEVaFIQNLVfyIE 183 (1150)
T KOG3635|consen 104 RQADKVELFKQTQSPKDSLHSKFNVHTGGTVVGDEEWGHLQIDAVSLYLLFLAQMTASGLQIIYNLDEVAFIQNLVFYIE 183 (1150)
T ss_pred HHHHHHHHHhcCCCchhhHHHHhcccCCCcccChhhccceehhHHHHHHHHHHHHHhcccEEEeeccHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCCCCCcccCCCCCCCCCcchhhHHHHHHHHHHHHhhhhhcCCCCCCcchhhchHHHHHHHHHHHHccCCCCCCCc
Q psy12312 138 SAYCIPDYGIWERGDKSNHGLPELNASSIGMAKAALEAMNELDLFGARGGPSSVIHVLADEAQKCQAVLQSMLPRESSSK 217 (1045)
Q Consensus 138 ~~wr~PD~GIWErr~k~N~g~~e~~asSigMa~AALeai~~~~lfG~~g~~~svi~v~~D~i~r~~~il~~~Lpres~Sk 217 (1045)
++||+|||||||||+|||||+||+||||||||||||||+|++|+||.+|++||||||++|++++|++++++||||||.||
T Consensus 184 ~aYrtpDfGvWERGdKtNqG~~ELnASSiGMaKAALEAin~~dLFG~~G~~~SVIhVl~De~~~cqsiL~SmLPReS~SK 263 (1150)
T KOG3635|consen 184 RAYRTPDFGVWERGDKTNQGIPELNASSIGMAKAALEAINELDLFGVKGGSWSVIHVLPDEHNRCQSILSSMLPRESTSK 263 (1150)
T ss_pred hhccCCCcceeecCCccCCCCcccchhhhHHHHHHHHHhhcccccccCCCCeeEEEEChhHHHHHHHHHHHhCCcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccchhhhcCCCCCCCHHHHHHHHHHHHHHhccCCceeeccCCCCCCCCCCCCCCCCChhhhhccCCCCcchhhhHH
Q psy12312 218 ELDSGLLSVISFPAFAVDDPLLISETREAIVSKLRGKYGCKRFLRDGYRTPKEDPNRLHYDPLELRMFENIESEWPLFFC 297 (1045)
Q Consensus 218 evDASLL~ii~~p~fav~Dp~~~~~T~~~I~~kL~g~yGvkRY~~Dgy~t~~ed~~r~~Y~~~e~~~feg~E~ewplf~~ 297 (1045)
++|||||++|+|||||++|++++..|+++|.+||+|+||||||+||||+|++|||||+||+|+|++.|||||||||+|++
T Consensus 264 e~DA~LL~iiSfPAFaveD~~Lv~qTk~~Iv~rLqgkyGckRFlRDGYkT~~EDpsRlYY~~aELk~FE~IECEWPlF~~ 343 (1150)
T KOG3635|consen 264 ETDAALLSIISFPAFAVEDPQLVSQTKDEIVSRLQGKYGCKRFLRDGYKTPLEDPSRLYYEPAELKLFENIECEWPLFFC 343 (1150)
T ss_pred ccchhHhhhccccchhcCcHHHHHHHHHHHHHHhhcchhhhhhhhccccCccCCccccccCHHHHhhhcCceeccHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhhhccCCCceecccccccCcccccccccCCCcceecccCCCCccchhHHHHHHHHH
Q psy12312 298 YLILDFCFQGDEARVKEYGEALDKVMVQGEEGMKFVPQLYAVPPEHVDEEYKNPGCVERIALGRCPLLWAQSLYILGRLL 377 (1045)
Q Consensus 298 ~l~i~~i~~G~~e~A~ey~e~L~~~~~~~~~g~~LlPE~Y~V~~~~v~~e~~~p~s~~r~p~gn~PllWsqslyi~~~ll 377 (1045)
||++|++|.|+.+++++|.+.|+++++.+.||.+|+||.|+||+|+|++|+.|||||+|+|.|..||+|+||+||+++|+
T Consensus 344 y~IiDgvFs~n~~qVeeY~~~Le~vLv~~~nG~~lVpelY~Vp~d~V~~E~~~pgsq~R~P~g~~pfLWgQSLyIi~~LL 423 (1150)
T KOG3635|consen 344 YMIIDGVFSGNAEQVEEYQEALESVLVRSKNGIPLVPELYYVPPDHVDEEYQNPGSQDRVPSGKTPFLWGQSLYIIASLL 423 (1150)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHheeCCCCcccccceeecChhhcchhhcCCCceecccCCCCchhhhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCCCCCCCccccccC-CCCCceEEEEEeecCHHHHHHHHhCCCcccccCCccCeeeechHHHHHHHHHcCCCCCC
Q psy12312 378 QHGFLATGELDPLNRRLCSE-KKPDVVVQVVILAEDADIQEKLEQHDIYVQTISDVAPIEVQPARVLSHLYTYLGRNEKL 456 (1045)
Q Consensus 378 ~~~~l~~~diDPl~R~~~~~-~~~~~~vqv~llae~~~~q~~L~~~gi~~qt~~~v~pi~i~~~~~L~~~y~~lG~n~kL 456 (1045)
++|||+|+||||||||++++ ++||+||||+|||||++||.+|++|||+||||+||+||||||+++|+|+|++||+|+||
T Consensus 424 ~eGfL~~~ElDPl~RR~S~~~~kpd~vVQV~~iAEs~~iq~~L~~~gI~vQti~eV~PIqi~pa~~L~~~y~~LG~N~kl 503 (1150)
T KOG3635|consen 424 AEGFLAPGELDPLNRRFSAQEKKPDVVVQVVLIAESNRIQDELATHGIQVQTIAEVEPIQIQPARELSHLYAKLGRNNKL 503 (1150)
T ss_pred HhhccCccccChHhhhhcccCCCCCeEEEEEEEechhHHHHHHHhcCccccccccccceeeccHHHHHHHHHHhCccccC
Confidence 99999999999999999998 99999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCCCCCCCcccccccceeEECCeEEEEeccch--------hh-------------------------------------
Q psy12312 457 ELTGRKSRDVGILSTSKLYALHDRIFAFTPQTC--------ID------------------------------------- 491 (1045)
Q Consensus 457 gLsGRp~r~~g~L~Tsk~Y~i~~~~~~f~P~~~--------~D------------------------------------- 491 (1045)
||||||.||||+|||||+|+|+|++|+|||||| .|
T Consensus 504 gLSGRP~RpiG~LgTSKlY~I~~~~v~ftPqf~D~s~fyl~~D~~llid~lk~eLqfl~~~Wrm~GRPlv~l~I~~~~l~ 583 (1150)
T KOG3635|consen 504 GLSGRPDRPIGVLGTSKLYRIRGKIVTFTPQFFDLSDFYLALDNELLIDDLKTELQFLKSYWRMSGRPLVTLLIREGMLR 583 (1150)
T ss_pred CCCCCCCCcccccchhhHHhhcCcEEEEehhhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHhccCCceEEEEeehhhcc
Confidence 999999999999999999999999999999999 22
Q ss_pred -------------------------------hhhhhccccCC---------------ccc--cCCCCCC---cc--CCCC
Q psy12312 492 -------------------------------DFLAANASSSN---------------SSQ--LQTPKGR---TP--SPET 518 (1045)
Q Consensus 492 -------------------------------~fl~~~~~~~~---------------p~~--l~~~~~~---~~--~~~~ 518 (1045)
+|++|+|++.. ++. +.....+ .+ +...
T Consensus 584 ~d~~~s~~l~~lrklk~GY~~GarV~~g~Ls~fl~ts~vt~L~Fl~~~~~~~~~~~~~d~~~~~~e~~~~~~~~t~~~~~ 663 (1150)
T KOG3635|consen 584 TDHIFSAMLDALRKLKKGYIGGARVVLGRLSDFLSTSAVTHLDFLDPSAEGYSVAAESDQFTLLDENAFEALNETINTRR 663 (1150)
T ss_pred CchhhHHHHHHHHHHhcCCcCceEEEechHHHHHHhhhhhhhhccCCCccccccccccccccccchhHHHHhcccccccc
Confidence 44455542110 000 0000000 00 0000
Q ss_pred C-------------------------------------------------------------------CC-CCcccCCCC
Q psy12312 519 G-------------------------------------------------------------------ET-PPLWNMGAT 530 (1045)
Q Consensus 519 ~-------------------------------------------------------------------~~-~~~~~~~~~ 530 (1045)
| .+ +.+++++++
T Consensus 664 g~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rlS~~~~pk~L~~~~v~~~~p~k~~~a~~r~s~~~~d~ 743 (1150)
T KOG3635|consen 664 GDETLRYLEHLLDRTAYTAKLKPSMRHRSIALDSNPAHLTKDRLSSTSKPKELQVMTVQMTLPTKVPLAHVRHSSNLLDS 743 (1150)
T ss_pred ccchhhhhhhhhhcccccccccccccccccccccCchHHHHHHHhccCCchhhhccccccCCCCcCcccccccccccccc
Confidence 0 00 011111111
Q ss_pred CC-----CCccc-cccccccCCCCHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCccCccCCCCcccHHHHHHHHHHHH
Q psy12312 531 SV-----TPRTR-VNSEAHYADTEVEELLTMLRESECLEEQGDILQYLVDTQGLNYDTGMMEEGQAVTVKDLLKILYEKA 604 (1045)
Q Consensus 531 ~~-----~~~~~-~~~~~~~~~~~~~~l~~~L~~~~~L~eQ~~iL~~L~~~~G~d~~t~~~~~~~~~tv~~LLeevY~kA 604 (1045)
+. .|+.. +..+..+.++++++|+++|++|+||++|++||++|+.++||||+|+++ ++++||++||+|||.||
T Consensus 744 ~~~~~~kvp~~~~~~~~~~~~~~~~~~ll~~L~ets~L~eq~~il~iL~~~~GPdf~T~l~--~~~~TVr~ll~ely~kA 821 (1150)
T KOG3635|consen 744 PHPRTTKVPTEHRHLPRDQMGEVDAEDLLDQLNETSSLEEQADILGILLMREGPDFDTELG--CRGVTVRDLLEELYGKA 821 (1150)
T ss_pred cccccccCCccccccchhhcccccHHHHHHHHhhhhhHHHHHHHHHHHHhccCCCcccccc--cCceeHHHHHHHHHHHH
Confidence 10 01100 112233457899999999999999999999999999999999999887 38899999999999999
Q ss_pred hhcccchhhhHHhhhccCcccchhhhHHHhhhcCcEEEEcCCCCCceeecCCCCHHHHHHHHHHHcCCchhhHHHHHHHH
Q psy12312 605 CQQKLWGLVRHTAGMLGKRVEDLAKAVTDLLVRQKQVTVGMPPANEHTITAPLPENELRHLIHVTYGDDESSAMLTQELL 684 (1045)
Q Consensus 605 ~~~~~W~lVR~~AglL~K~v~~La~aiTdlLVrqKqvtVG~~~~~E~~Is~Pl~~~ei~~~I~~~~~~d~~~~vL~QEll 684 (1045)
|++|+|++|||+||+|+|.|++||+||||+||||||||||+||++|++||+||||.||+++||++|++|++.||||||++
T Consensus 822 g~~r~W~lVRy~aglL~k~ve~la~a~TdlLvhqKqlTvG~pp~~E~~isapl~p~el~~lIy~a~~~D~~~avl~qE~v 901 (1150)
T KOG3635|consen 822 GSQRLWGLVRYTAGLLRKKVESLAEAITDLLVHQKQLTVGLPPQREKVISAPLPPEELQNLIYEASGYDESIAVLTQELV 901 (1150)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhccceeeecCCCccceeccCCCCHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCccccchhhHHHHHHHHHHHHHHHhhhhccchhhhHHHhhcCChHHHHHHHHHHccCcchhhcccccCccc
Q psy12312 685 VYLAMFIRTEPQLFLEMLRLRVGLIIQVMATELSRTLICTGEEASEHLLNLSPFEMKNLLHHILSGKEFAISSVGRGNLS 764 (1045)
Q Consensus 685 iyLg~lIrt~P~LF~gmL~lRvG~iiq~m~~eLar~~~~~~~ea~e~L~~LSP~eik~lL~~vLs~~e~~~~~~~~~~~~ 764 (1045)
|||||+|||+|+||.||||||||||||+|+.||+++++ |+|+++||||||||||++|+||||||||+..
T Consensus 902 vy~am~irt~P~lf~emlrlRiGlii~~m~~el~~sl~---e~as~~l~nLsP~e~k~ll~~ils~~efg~v-------- 970 (1150)
T KOG3635|consen 902 VYLAMYIRTNPSLFREMLRLRIGLIIQVMAIELQISLR---EKASEDLMNLSPFEMKNLLHHILSGKEFGAV-------- 970 (1150)
T ss_pred HHhHhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc---chhchhhcCCChHHHHHHHHHhhchhhhccc--------
Confidence 99999999999999999999999999999999999987 8999999999999999999999999999831
Q ss_pred eecccccccccccccccccccCCCCCCCCCCCCCCcccCchhHHHhhcCCCCCCCchhhHHHHHHHhhc-cceEecceee
Q psy12312 765 VVSRKSGRVSKKSQIDGLLGVKPDQLDVGADDVEPDRQGQWLRRRRLDGALNRVPRDFYIRVWNVLEKC-QGLLLEGRLL 843 (1045)
Q Consensus 765 ~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~Wl~rR~ldGaLnRvP~~FY~~VW~iL~~c-~GlvI~~~~L 843 (1045)
....+||||||+||||||||.+||++||+||+|| |||.|+|++|
T Consensus 971 -----------------------------------s~~r~wLrrRrlDGaLnRVP~gFY~rvW~iLqk~p~Gl~i~g~vL 1015 (1150)
T KOG3635|consen 971 -----------------------------------STERQWLRRRRLDGALNRVPVGFYQRVWKILQKCPHGLSIEGTVL 1015 (1150)
T ss_pred -----------------------------------chhHHHHHHHhhccchhcCchHHHHHHHHHHHhCCCceeECcEec
Confidence 1123999999999999999999999999999999 9999999999
Q ss_pred ccccccccCccchhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhhCCCCCCCCeeeHhHHHHHHHHHHHhhcccccC
Q psy12312 844 PHGLTQEMTSGELKFALAVETVLNCIPQPEYRQLVVEALMVLTLIAERNFVSTLGDIIVVENIVHKANQIFLEDQVRVNG 923 (1045)
Q Consensus 844 ~~~~~~eMT~gE~~FAl~VE~lLn~I~~PEYRQL~VEaL~vl~~i~e~np~l~~~~~i~lD~lv~~A~~~f~~d~~~~~~ 923 (1045)
||+||+||||||+||||+||++||+|++||||||+||+||||++++++||+++|+++||+|.||+.||++|++||+..++
T Consensus 1016 p~stt~eMT~~EikFal~vE~~Ln~I~qPEyRQlvVE~lmvltlvl~~np~l~~~~~idvd~ivh~AnqlF~~dq~~lq~ 1095 (1150)
T KOG3635|consen 1016 PQSTTQEMTPGEIKFALLVEETLNRIPQPEYRQLVVEALMVLTLVLERNPELSFGGIIDVDHIVHEANQLFLKDQKHLQA 1095 (1150)
T ss_pred chhhhhhcCccceeeeeEhHHHhccCCcHHHHHHHHHHHHHHHHHHhcCCCcccCCeeeHHHHHHHHHHHHHhhhhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988876
Q ss_pred cccccccCCCcchhhcccCCcccCchHHHHHhhhcCCCCCCcchhHHHHHHHHHHh--hcCCCCCCcccCCC
Q psy12312 924 DATLCCAKPKDEAYLKSSGGLLCGGAAFICQHLYDSAPGGSFGTMNYLMRATAEML--DCFPRDGQIDCSSS 993 (1045)
Q Consensus 924 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~FYds~P~g~~gT~tYl~kAv~~~l--~~~~~~dQ~~c~~s 993 (1045)
+++ .+.|+||+++|++||||||+|.|||||||+|||++++ +++|+ .++.|.++
T Consensus 1096 ~~~----------------~~~~~~a~~ic~~fYdsaPsG~ygT~tYl~rAv~nl~~~ev~p~-ne~~c~i~ 1150 (1150)
T KOG3635|consen 1096 DDT----------------ELREDGARGICKHFYDSAPSGEYGTMTYLTRAVANLYLGEVLPN-NESDCQIS 1150 (1150)
T ss_pred cch----------------hhhhcchhhHHHHHhcCCCCCccchhHHHHHHHHHHHhcccCCC-CCccccCC
Confidence 433 2789999999999999999999999999999999866 55565 45778764
No 2
>PF00723 Glyco_hydro_15: Glycosyl hydrolases family 15; InterPro: IPR011613 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 15 GH15 from CAZY comprises enzymes with several known activities; glucoamylase (3.2.1.3 from EC); alpha-glucosidase (3.2.1.20 from EC); glucodextranase (3.2.1.70 from EC). Glucoamylase (GA) catalyses the release of D-glucose from the non-reducing ends of starch and other oligo- or poly-saccharides. Studies of fungal GA have indicated 3 closely-clustered acidic residues that play a role in the catalytic mechanism []. This region is also conserved in a recently sequenced bacterial GA []. The 3D structure of the pseudo-tetrasaccharide acarbose complexed with glucoamylase II(471) from Aspergillus awamori var. X100 has been determined to 2.4A resolution []. The protein belongs to the mainly-alpha class, and contains 19 helices and 9 strands. This protein is found in higher organisms, and is represented by phosphorylase kinase subunits.; GO: 0004339 glucan 1,4-alpha-glucosidase activity, 0005976 polysaccharide metabolic process; PDB: 1GAI_A 1GAH_A 1LF6_B 1LF9_A 3EQA_A 1AYX_A 2F6D_A 2FBA_A 1DOG_A 1GLM_A ....
Probab=100.00 E-value=2.1e-46 Score=434.70 Aligned_cols=373 Identities=30% Similarity=0.404 Sum_probs=293.2
Q ss_pred hhhhhhhhccccCCCcccccCCC----------chhHHHHHHHHHh-------------cHHHHHHHHHHHHHHHhcchh
Q psy12312 5 RDKEALVSVLTDSLINLVPAQTH----------LRTNVDTRLGFFI-------------GRYSCVKLMRGLLMAMMQQKH 61 (1045)
Q Consensus 5 ~~~~~~il~~Q~p~tGl~pAs~~----------VRDa~yt~~Al~~-------------l~~~A~k~mr~LL~~~m~q~~ 61 (1045)
|.+..+++..|+|++|+|+||++ +||++||+.|+|. +.+.++++|++.+.+++++..
T Consensus 9 rs~~~l~l~~~~~~~GaiiAsps~s~pdY~y~W~RD~a~~~~al~~~g~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~ 88 (448)
T PF00723_consen 9 RSALTLKLLTQEPITGAIIASPSTSLPDYRYCWVRDAAYTAYALWALGYRDEARAFFYELEQSLVKLMRGYLQPMYRQQG 88 (448)
T ss_dssp HTBTTTHTTBTTSSTT-B-S-SSBSSSBTCSEEHHHHHHHHHHHHHHT-H--HHHHHTTT-HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhccCCCCCCeEEeecccCCCCCceeecccHHHHHHHHHHhhhhHHHHHHHhhhhHhhhhhhhhhhhhhhhhcC
Confidence 56778899999999999999875 9999999999993 577888999999999999999
Q ss_pred hHHhhhccCCCCcccccccccCCCccccCCcccchhhhhHHHHHHHHHHHHHHcCCceeeCcchHHHHHHHHHHHHHhCC
Q psy12312 62 KVEQFKITQNPLDALHAKYHSATGETVVGDTEWGHLQIDAISLYLLILAQMTASGLQIVFCLDEVAFIQNLVFYIESAYC 141 (1045)
Q Consensus 62 kve~fk~~~~~~~~lh~kY~~~tg~pVvGn~aw~hlQlDa~gl~LlaL~qm~~sGl~ii~t~dev~fIqnLV~yie~~wr 141 (1045)
+++.++..+.+. +||..+...+|.+++||.+|+|+|+|++|++++++++|+++|+.+.++.+++++|+++++||++.|+
T Consensus 89 ~~~~~~~~~~~~-~L~~~~~~~~~~~~~g~~~w~~~Q~D~~gl~l~~l~~~~~~g~~~~~~~~~~~~I~~~~~yi~~~w~ 167 (448)
T PF00723_consen 89 KVNPSGEFQSPE-GLHEPGYNVSGPVRVGNPAWGRPQNDGPGLRLLALWQYIDSGLQIIYTYWEVSFIKNDLDYIERNWR 167 (448)
T ss_dssp S-BTTB-TTTTG-GGGTTEEETTSEBTTS-B-ES--BTHHHHHHHHHHHHHHHTTHHHHHTHHHHHTHHHHHHHHHHHTT
T ss_pred ccCCCccccCcc-ccccceecCCCCcccCchhccCcCCCchHHHHHHHHHHHHcCCCcccccchhHHHHHHHHHHHHHcC
Confidence 888887777666 8886555555566699999999999999999999999999998888777878889999999999999
Q ss_pred CCCCCCcccCCCCCCCCCcchhhHHHHHHHHHH-HHhhhhhcCCCCCCcchhhchHHHHHHHHHH------HHccCC---
Q psy12312 142 IPDYGIWERGDKSNHGLPELNASSIGMAKAALE-AMNELDLFGARGGPSSVIHVLADEAQKCQAV------LQSMLP--- 211 (1045)
Q Consensus 142 ~PD~GIWErr~k~N~g~~e~~asSigMa~AALe-ai~~~~lfG~~g~~~svi~v~~D~i~r~~~i------l~~~Lp--- 211 (1045)
.|||||||++.+ .+.|++|+.|||+||. +++.++.||.++... .|...++.|.+ .+ .++..+
T Consensus 168 ~pd~dlWEe~~g-----~~~f~~S~~~~~~AL~~a~~~a~~~g~~~~~~-~~~~~a~~i~~--~l~~~~~~~~g~~~~~~ 239 (448)
T PF00723_consen 168 EPDFDLWEERNG-----IHFFTASSAMQWAALLRAANLAELFGDPGDAE-RWRETADEIRE--RLEGWYGLERGFWPEFG 239 (448)
T ss_dssp SBEE-TTSS-EE-----EEHH--HHHHHHHHHHHHHHHHHHTT-HHHHH-HHHHHHHHHHH--HHHHHHEESGGGBTTSS
T ss_pred CcCCccccccCC-----CCccchhHHHHHHHHHHHHHHHHHcCCchHHH-HHHHHHHHHHH--HhhhhccccccccCCCC
Confidence 999999998866 3344449999999996 577779999765332 33444455533 22 123344
Q ss_pred ---CCCCC------------cccccccchhhhcCCCCCCC----------HHHHHHHHHHHHHHhccCCc---------e
Q psy12312 212 ---RESSS------------KELDSGLLSVISFPAFAVDD----------PLLISETREAIVSKLRGKYG---------C 257 (1045)
Q Consensus 212 ---res~S------------kevDASLL~ii~~p~fav~D----------p~~~~~T~~~I~~kL~g~yG---------v 257 (1045)
+..++ +.+|+|+|.++.+++.+++| | ++.+|+.+|+++|..+|. +
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~lD~slll~~~~~~~~~~d~~~~~~~p~sp-~~~~T~~~i~~~l~~~~~in~g~~~~~~ 318 (448)
T PF00723_consen 240 YFIRIYGSFSGNSEQVQGYRSGLDASLLLLPLFGFVPPDDVDDERFQPHSP-RVLNTLKAIEEELRVDYPINPGDIDPGI 318 (448)
T ss_dssp BESEESSSEETTTCCEEEGSGS-BTHHHHHHHTTSSTTT-S-TTTTTTTSH-HHHHHHHHHHHCTTTTEGGGTT-STTSE
T ss_pred eEEEecCCccccchhhhcchhhHHHHHHHHHHccCCCcccccccccccccH-HHHHHHHHHHHHHHHhcCCCccccCccc
Confidence 22455 99999999999999999999 9 999999999999998765 9
Q ss_pred eeccCCCCCCCCCCCCCCCCChhhhhccCCCCcchhhhHHHHHHHHHHcCCHHHHHHHHHHHHhhhhccCCCceeccccc
Q psy12312 258 KRFLRDGYRTPKEDPNRLHYDPLELRMFENIESEWPLFFCYLILDFCFQGDEARVKEYGEALDKVMVQGEEGMKFVPQLY 337 (1045)
Q Consensus 258 kRY~~Dgy~t~~ed~~r~~Y~~~e~~~feg~E~ewplf~~~l~i~~i~~G~~e~A~ey~e~L~~~~~~~~~g~~LlPE~Y 337 (1045)
+||..|+|. ++..+.+++|.||++|
T Consensus 319 ~RY~~D~y~----------------~~~~~~G~pw~l~T~w--------------------------------------- 343 (448)
T PF00723_consen 319 GRYPEDVYD----------------DGLGSEGNPWFLCTFW--------------------------------------- 343 (448)
T ss_dssp BSCTT--GG----------------SSSBTGS-CBHHHHHH---------------------------------------
T ss_pred eeccccccc----------------CccCCCCccceeeech---------------------------------------
Confidence 999999982 2345567778777776
Q ss_pred ccCcccccccccCCCcceecccCCCCccchhHHHHHHHHHhccCCCCCCCCCCccccccCCCCCceEEEEEeecCHHHHH
Q psy12312 338 AVPPEHVDEEYKNPGCVERIALGRCPLLWAQSLYILGRLLQHGFLATGELDPLNRRLCSEKKPDVVVQVVILAEDADIQE 417 (1045)
Q Consensus 338 ~V~~~~v~~e~~~p~s~~r~p~gn~PllWsqslyi~~~ll~~~~l~~~diDPl~R~~~~~~~~~~~vqv~llae~~~~q~ 417 (1045)
T Consensus 344 -------------------------------------------------------------------------------- 343 (448)
T PF00723_consen 344 -------------------------------------------------------------------------------- 343 (448)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhCCCcccccCCccCeeeechHHHHHHHHHcCCCCCCCcCCCCCCCcccccccceeEECCeEEEEeccchhhhhhhhc
Q psy12312 418 KLEQHDIYVQTISDVAPIEVQPARVLSHLYTYLGRNEKLELTGRKSRDVGILSTSKLYALHDRIFAFTPQTCIDDFLAAN 497 (1045)
Q Consensus 418 ~L~~~gi~~qt~~~v~pi~i~~~~~L~~~y~~lG~n~kLgLsGRp~r~~g~L~Tsk~Y~i~~~~~~f~P~~~~D~fl~~~ 497 (1045)
T Consensus 344 -------------------------------------------------------------------------------- 343 (448)
T PF00723_consen 344 -------------------------------------------------------------------------------- 343 (448)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCccccCCCCCCccCCCCCCCCCcccCCCCCCCCccccccccccCCCCHHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Q psy12312 498 ASSSNSSQLQTPKGRTPSPETGETPPLWNMGATSVTPRTRVNSEAHYADTEVEELLTMLRESECLEEQGDILQYLVDTQG 577 (1045)
Q Consensus 498 ~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~L~eQ~~iL~~L~~~~G 577 (1045)
T Consensus 344 -------------------------------------------------------------------------------- 343 (448)
T PF00723_consen 344 -------------------------------------------------------------------------------- 343 (448)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccCccCCCCcccHHHHHHHHHHHHhhcccchhhhHHhhhccCcccchhhhHHHhhhcCcEEEEcCCCCCceeecCCC
Q psy12312 578 LNYDTGMMEEGQAVTVKDLLKILYEKACQQKLWGLVRHTAGMLGKRVEDLAKAVTDLLVRQKQVTVGMPPANEHTITAPL 657 (1045)
Q Consensus 578 ~d~~t~~~~~~~~~tv~~LLeevY~kA~~~~~W~lVR~~AglL~K~v~~La~aiTdlLVrqKqvtVG~~~~~E~~Is~Pl 657 (1045)
+++.|++++|.++++.+.|.++|.++++++|.+++ ||+|||+++++|..++.|.
T Consensus 344 --------------~ae~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~------------k~~~~g~~~~~~~~~~~~~ 397 (448)
T PF00723_consen 344 --------------AAEALYAEAYRRAGRGRDWPIVREARGFFEKFVSS------------KQITVGIPYNSEDFISLPK 397 (448)
T ss_dssp --------------HHHHHHHHHHHHHHHTEBEEECTTTHHHHHHHTTT------------GSSESEEEETSHHHHHHHH
T ss_pred --------------hHHHHHHHHHHHHhcCCcccchHHHHHHHHHHhcc------------cccccccccCchhhhhccc
Confidence 24568999999999999999999999999999998 9999999999999999999
Q ss_pred CHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHhcCccccchhhHHHHHH
Q psy12312 658 PENELRHLIHVTYGDDESSAMLTQELLVYLAMFIRTEPQLFLEMLRLRVGL 708 (1045)
Q Consensus 658 ~~~ei~~~I~~~~~~d~~~~vL~QElliyLg~lIrt~P~LF~gmL~lRvG~ 708 (1045)
++.++.+.+.++|.++.+..+|+||+..|.|++++++|..|+.+..||+||
T Consensus 398 ~~~~~~d~~l~~~~~~~~~g~lsEq~~~~~G~~~ga~pltwS~~~~l~~~~ 448 (448)
T PF00723_consen 398 ALFEYADSFLRVVREANRNGLLSEQFNRYTGFMQGARPLTWSYASFLRAGW 448 (448)
T ss_dssp HHHHHHHHHHHHHHHS-TTS---SEE-TTT--EESSSS-HHHHHHHHHHH-
T ss_pred chHHHHHHHHHHHhcCCcCcEeeeeeecccCCcCCCCchhhhhhhhHhhcC
Confidence 999999999999976999999999999999999999999999999999998
No 3
>COG3387 SGA1 Glucoamylase and related glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=7.8e-37 Score=364.99 Aligned_cols=322 Identities=18% Similarity=0.212 Sum_probs=254.7
Q ss_pred hhccccCCCcccccCCC-----------------chhHHHHHHHHH--hcHHHHHHHHHHHHHHHhcchhhHHhh-hccC
Q psy12312 11 VSVLTDSLINLVPAQTH-----------------LRTNVDTRLGFF--IGRYSCVKLMRGLLMAMMQQKHKVEQF-KITQ 70 (1045)
Q Consensus 11 il~~Q~p~tGl~pAs~~-----------------VRDa~yt~~Al~--~l~~~A~k~mr~LL~~~m~q~~kve~f-k~~~ 70 (1045)
....++| +|.+.||.+ +||++++++||. |+.++|..++.++.+.......=.+.+ .++.
T Consensus 254 ~~~~~~~-~G~ivAs~t~~l~~~~~g~~dY~y~W~RD~~~~~~AL~~~G~~~~a~~~f~~l~~~~~~~~~~~~~y~~~g~ 332 (612)
T COG3387 254 KALNYNP-TGAIVASPTTSLPELIGGTRDYRYVWPRDASYAALALLAIGYKKEALRFFEFLPDVQTPNGKLYHKYSIDGS 332 (612)
T ss_pred HHcccCC-CCcEEEcCCCCccccCCCCCCceEEccCcHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCceeeEEecCCC
Confidence 3445667 677776654 899999999998 599999999999888776644201111 2222
Q ss_pred CCCcccccccccCCCccc-cCCcccchhhhhHHHHHHHHHHHHHHcCCceeeCcchHHHHHHHHHHHHHhCCCCCCCCcc
Q psy12312 71 NPLDALHAKYHSATGETV-VGDTEWGHLQIDAISLYLLILAQMTASGLQIVFCLDEVAFIQNLVFYIESAYCIPDYGIWE 149 (1045)
Q Consensus 71 ~~~~~lh~kY~~~tg~pV-vGn~aw~hlQlDa~gl~LlaL~qm~~sGl~ii~t~dev~fIqnLV~yie~~wr~PD~GIWE 149 (1045)
......++-....++-|| +||.++.|.|+|.++..+.+++.+.+.+.. +..+.|++++. ++.++..|+.||+|+||
T Consensus 333 ~~~~~w~~~~~~~~~~pv~~~~~a~~~~~ld~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~p~~~~WE 409 (612)
T COG3387 333 DLAESWLPVSGYYNSFPVRIGNTALVQGALDVYGSIMNDIYFYAKYYAI--YILPAADYLRR-MEKIKANLPTPDFDLWE 409 (612)
T ss_pred ccccccccccCCCCCCceEEcchhhHHHHHHHHHHHHHHHHHHHhhcch--hhHHHHHHHHH-HHhhhcCCCCCccceec
Confidence 222233442222235889 999999999999999999999999988643 34689999999 99999999999999999
Q ss_pred cCCCCCCCCCcchhhHHHHHHHHHHHHhh-hhhcCCCCCCcchhhchHHHHHHHHHHHHccCC-------CCCC---Ccc
Q psy12312 150 RGDKSNHGLPELNASSIGMAKAALEAMNE-LDLFGARGGPSSVIHVLADEAQKCQAVLQSMLP-------RESS---SKE 218 (1045)
Q Consensus 150 rr~k~N~g~~e~~asSigMa~AALeai~~-~~lfG~~g~~~svi~v~~D~i~r~~~il~~~Lp-------res~---Ske 218 (1045)
+|.+ +|+||++|+||||+++.. ++.+|..+.. ..|.-.+|.++. ++.+.++. |..+ ++.
T Consensus 410 er~g-------~~~yt~~~~~agLd~A~~lA~~~gd~~~a-~~~~~~ad~ik~--~v~~~~~~~~~~~f~r~~~~~~~~~ 479 (612)
T COG3387 410 ERGG-------HFTYTKATVYAGLDAAADLAEEFGDKGSA-EHWRKTADELKE--AVLRRGYAEDGGYFVRSLGRKPDDT 479 (612)
T ss_pred ccCC-------cccchHHHHHHHHHHHHHHHHHhCCcHHH-HHHHHHHHHHHH--HHHHhcccccCCeeehhcCCCcccc
Confidence 9966 999999999999997555 4999955444 467777777755 55555444 4456 999
Q ss_pred cccccchhhhcCCCCCCCHHHHHHHHHHHHHHhccCC-ceeeccCCCCCCCCCCCCCCCCChhhhhccCCCCcchhhhHH
Q psy12312 219 LDSGLLSVISFPAFAVDDPLLISETREAIVSKLRGKY-GCKRFLRDGYRTPKEDPNRLHYDPLELRMFENIESEWPLFFC 297 (1045)
Q Consensus 219 vDASLL~ii~~p~fav~Dp~~~~~T~~~I~~kL~g~y-GvkRY~~Dgy~t~~ed~~r~~Y~~~e~~~feg~E~ewplf~~ 297 (1045)
+|||+|.++.|||++++|| ++.+|+++|+++|..++ |++||.+ -| .|++.+.+++|++|++
T Consensus 480 vDasll~l~~fg~i~~~D~-~~~~t~~~I~~~L~~~~~gi~RY~~-~~----------------~d~~~~~~~~w~i~t~ 541 (612)
T COG3387 480 VDASLLGLVLFGFIPPDDP-RILATVEAIERELLVDGGGIRRYNN-EY----------------DDGLGGDNGPWIITTL 541 (612)
T ss_pred ccHHHhhccccCccCCCCH-HHHHHHHHHHHHHhhcCCcEEcCcc-cc----------------ccccCCCCCcceeehh
Confidence 9999999999999999999 99999999999999876 8999995 11 1223456689999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhhhccCCCceecccccccCcccccccccCCCcceecccCCCCccchhHHHHHHHHH
Q psy12312 298 YLILDFCFQGDEARVKEYGEALDKVMVQGEEGMKFVPQLYAVPPEHVDEEYKNPGCVERIALGRCPLLWAQSLYILGRLL 377 (1045)
Q Consensus 298 ~l~i~~i~~G~~e~A~ey~e~L~~~~~~~~~g~~LlPE~Y~V~~~~v~~e~~~p~s~~r~p~gn~PllWsqslyi~~~ll 377 (1045)
|++.+++..|+.++|+++++|+... ++..+++|||+ . |+ ..+|.||+||+||||.||++...
T Consensus 542 Wl~~~~~~~g~~~~a~~ll~~l~~~----a~~~gll~EQv--~----------~~--~G~~~g~~PlawSha~~I~ai~~ 603 (612)
T COG3387 542 WLSEYYLALGRLDEAKKLLEWLLAF----ASPLGLLPEQV--D----------DG--SGEPLGAFPLAWSHAEFIIAIRE 603 (612)
T ss_pred HHHHHHHHccchHHHHHHHHHHHHh----cCCCCCcchhh--c----------CC--CCccCCCCcchhhhHHHHHHHHH
Confidence 9999999999999999999999999 55556999995 3 23 35788999999999999999886
Q ss_pred hccCC
Q psy12312 378 QHGFL 382 (1045)
Q Consensus 378 ~~~~l 382 (1045)
++.-+
T Consensus 604 l~~~~ 608 (612)
T COG3387 604 LEEAL 608 (612)
T ss_pred HHhhh
Confidence 65443
No 4
>TIGR01535 glucan_glucosid glucan 1,4-alpha-glucosidase. Glucan 1,4-alpha-glucosidase catalyzes the hydrolysis of terminal 1,4-linked alpha-D-glucose residues from non-reducing ends of polysaccharides, releasing a beta-D-glucose monomer. Some forms of this enzyme can hydrolyze terminal 1,6- and 1,3-alpha-D-glucosidic bonds in polysaccharides as well.
Probab=100.00 E-value=4e-36 Score=359.83 Aligned_cols=297 Identities=18% Similarity=0.186 Sum_probs=233.1
Q ss_pred chhHHHHHHHHH--hcHHHHHHHHHHHHHHHhcchhhHHhhhccCCCCcccccccccCCCccccCCcccchhhhhHHHHH
Q psy12312 28 LRTNVDTRLGFF--IGRYSCVKLMRGLLMAMMQQKHKVEQFKITQNPLDALHAKYHSATGETVVGDTEWGHLQIDAISLY 105 (1045)
Q Consensus 28 VRDa~yt~~Al~--~l~~~A~k~mr~LL~~~m~q~~kve~fk~~~~~~~~lh~kY~~~tg~pVvGn~aw~hlQlDa~gl~ 105 (1045)
+||++|++.||. |+.++|.++++||...... .+.++.+|..+|. ..|..+|+|.||++
T Consensus 297 ~RD~a~~a~AL~~~G~~~~a~~~~~~l~~~~~~--------------~G~~lq~y~vdG~------~~~~~iQlD~~g~~ 356 (648)
T TIGR01535 297 PRDLYQVANAFLAAGDVDSALRSLDYLAKVQQD--------------NGMFPQNSWVDGK------PYWTGIQLDETAFP 356 (648)
T ss_pred hhhHHHHHHHHHHCCCHHHHHHHHHHHHHHhcc--------------CCCcCceeccCCC------CCCCCccccHHHHH
Confidence 999999999999 4999999999999876542 2343445999953 35888999999999
Q ss_pred HHHHHHHHHcCCceeeCcchHHHHHHHHHHHHHhCCCCCCCCcccCCCCCCCCCcchhhHHHHHHHHHHHHhhh-hhcCC
Q psy12312 106 LLILAQMTASGLQIVFCLDEVAFIQNLVFYIESAYCIPDYGIWERGDKSNHGLPELNASSIGMAKAALEAMNEL-DLFGA 184 (1045)
Q Consensus 106 LlaL~qm~~sGl~ii~t~dev~fIqnLV~yie~~wr~PD~GIWErr~k~N~g~~e~~asSigMa~AALeai~~~-~lfG~ 184 (1045)
|++++.+.+.|. .+-|.+|+.+++|+.+.|+.||+||||++.+ ..+||+|++| |||+++..+ +.+|.
T Consensus 357 i~~~~~l~~~~~-----~~~~~~vk~aadfl~~~~p~p~~d~WEer~g-----~~~~T~a~v~--aaL~~Aa~iA~~~g~ 424 (648)
T TIGR01535 357 ILLAYRLHRYDH-----AFYDKMLKPAADFIVKNGPKTGQERWEEIGG-----YSPSTLAAEI--AGLTAAADIAEQNGD 424 (648)
T ss_pred HHHHHHHHHcCc-----HHHHHHHHHHHHHHHHcCCCCCCCcccccCC-----cCchhHHHHH--HHHHHHHHHHHHcCC
Confidence 999999988774 3568999999999999999999999999966 5677777777 999975554 88887
Q ss_pred CCCCcchhhchHHHHHHHHHHHHccCCC------------C---------------------CCCcccccccchhhhcCC
Q psy12312 185 RGGPSSVIHVLADEAQKCQAVLQSMLPR------------E---------------------SSSKELDSGLLSVISFPA 231 (1045)
Q Consensus 185 ~g~~~svi~v~~D~i~r~~~il~~~Lpr------------e---------------------s~SkevDASLL~ii~~p~ 231 (1045)
+. ....|...+|.|++ .+.+.++.. . ++++.||||+|.++.||+
T Consensus 425 ~~-~a~~w~~~Ad~i~~--~i~~~~~~~~g~~~~~~~f~r~~~~~~~~~~~~~~~~n~~~~~~~~~~vDaSlL~L~~~G~ 501 (648)
T TIGR01535 425 AG-SAQKYRETADNWQK--LIENWTFTTNGPLGDGQYYLRIAGLGDPNADFLINIANGGGVYPEKEVLDPGFLELVRLGV 501 (648)
T ss_pred cH-HHHHHHHHHHHHHH--HHHHhCcCCCcccCCCCeEEEeecCCCCccccccccccccccCCCCCccCHHHHHHHHcCC
Confidence 63 34466777888866 444444332 2 458999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHhccC----CceeeccCCCCCCCCCCCCCCCCChhhhhccCCCCcchhhhHHHHHHHHHHcC
Q psy12312 232 FAVDDPLLISETREAIVSKLRGK----YGCKRFLRDGYRTPKEDPNRLHYDPLELRMFENIESEWPLFFCYLILDFCFQG 307 (1045)
Q Consensus 232 fav~Dp~~~~~T~~~I~~kL~g~----yGvkRY~~Dgy~t~~ed~~r~~Y~~~e~~~feg~E~ewplf~~~l~i~~i~~G 307 (1045)
++++|| +|.+|+++|+++|..+ +|++||..|||+...+ ...+|. .+.-..||||+.|+..+++..|
T Consensus 502 ~~~dDP-ri~~Tl~aIe~~L~~~~~~~g~~~RY~~Dgyg~~~~--~~~~~~-------~~~G~~Wpi~T~~~~~y~l~~~ 571 (648)
T TIGR01535 502 KSPDDP-HILATLKEIDSTIKVDTPKGPSWYRYTHDGYGEPAK--TEAYDG-------TGKGRLWPLLTGERGHYELAAG 571 (648)
T ss_pred cCCCCH-HHHHHHHHHHHHhccCCCCCCeEEecCCCCCCCcCC--CCCccC-------CcCCceeehhhhHHHHHHHHcC
Confidence 999999 9999999999999876 7899999999964221 122332 2445789999999999999988
Q ss_pred CHHHHHHHHHHHHhhhhccCCCceecccccccCcccccccccCCCcceeccc-CCCCccchhHHHHHHHH-Hhcc
Q psy12312 308 DEARVKEYGEALDKVMVQGEEGMKFVPQLYAVPPEHVDEEYKNPGCVERIAL-GRCPLLWAQSLYILGRL-LQHG 380 (1045)
Q Consensus 308 ~~e~A~ey~e~L~~~~~~~~~g~~LlPE~Y~V~~~~v~~e~~~p~s~~r~p~-gn~PllWsqslyi~~~l-l~~~ 380 (1045)
+. |++|++|+... ++..++|||| |.++ ..... ++.....|. +..||+||||+||.... +.+|
T Consensus 572 ~~--a~~~l~~~~~~----a~~~g~lpEQ--V~d~-~~~~~--~~~~~G~pt~Sa~PL~WsHA~yi~l~~s~~~g 635 (648)
T TIGR01535 572 KD--ATPYLKAMEKF----ANEGGMIPEQ--VWDQ-TDLPS--RGLFYGLPTDSASPLNWAHAEYVKLLRSNIDG 635 (648)
T ss_pred Ch--HHHHHHHHHHh----cCcCCCcCcc--cCCC-CCCcc--cccccCCcCCccccchhhHHHHHHHHHHhhcC
Confidence 85 78999999999 5555699999 6544 22211 133345774 88999999999999765 3444
No 5
>TIGR01577 oligosac_amyl oligosaccharide amylase. The name of this type of amylase is based on the characterization of an glucoamylase family enzyme from Thermoactinomyces vulgaris. The T. vulgaris enzyme was expressed in E. coli and, like other glucoamylases, it releases beta-D-glucose from starch. However, unlike previously characterized glucoamylases, this T. vulgaris amylase hydrolyzes maltooligosaccharides (maltotetraose, maltose) more efficiently than starch (PubMed: 11549021), indicating this enzyme belongs to a class of glucoamylase-type enzymes with oligosaccharide-metabolizing activity.
Probab=100.00 E-value=6.2e-36 Score=359.93 Aligned_cols=297 Identities=18% Similarity=0.181 Sum_probs=233.3
Q ss_pred ccccCCCcccccCCC---------------chhHHHHHHHHH--hcHHHHHHHHHHHHHHHhcchhhHHhhhccCCCCcc
Q psy12312 13 VLTDSLINLVPAQTH---------------LRTNVDTRLGFF--IGRYSCVKLMRGLLMAMMQQKHKVEQFKITQNPLDA 75 (1045)
Q Consensus 13 ~~Q~p~tGl~pAs~~---------------VRDa~yt~~Al~--~l~~~A~k~mr~LL~~~m~q~~kve~fk~~~~~~~~ 75 (1045)
..++..+|.+.||++ +||++++++||. |+.++|+++++|++.... +.+.
T Consensus 267 ~~~~~~~GaiiAs~s~~~~~~~~~~Y~y~W~RD~~~~a~Al~~~G~~~~a~~~l~~l~~~q~--------------~~G~ 332 (616)
T TIGR01577 267 LLTDGEYGSMIAAPEFDEDFVRCGGYAYCWGRDASYIATALDRAGYHDRVDRFFRWAMQTQS--------------RDGS 332 (616)
T ss_pred hccCCCCCcEEEcCCCCcccccCCCCceeccccHHHHHHHHHHCCCHHHHHHHHHHHHHhhC--------------cCCC
Confidence 356656577766422 899999999999 499999999999987643 2344
Q ss_pred cccccccCCCccccCCcccc-hhhhhHHHHHHHHHHHHHHcCCceeeCcchHHHHHHHHHHHHHhC----CCCCCCCccc
Q psy12312 76 LHAKYHSATGETVVGDTEWG-HLQIDAISLYLLILAQMTASGLQIVFCLDEVAFIQNLVFYIESAY----CIPDYGIWER 150 (1045)
Q Consensus 76 lh~kY~~~tg~pVvGn~aw~-hlQlDa~gl~LlaL~qm~~sGl~ii~t~dev~fIqnLV~yie~~w----r~PD~GIWEr 150 (1045)
.+++|..+++ + ..|. +.|+|.+|.+|++++++.+......+..+-|..|+.+++|+.+.| +.||+||||+
T Consensus 333 ~~~~~~~dG~-~----~~~~~~~Q~D~~g~~l~al~~y~~~t~d~~~~~~~~~~v~~a~~fl~~~~~~~l~~~~~~lWEe 407 (616)
T TIGR01577 333 WQQRYYLNGR-L----APLQWGLQIDETGSILWAMDQHYRLTNDRAFLEEIWESVQKAAQYLILFIDPETPLPCRDLWEE 407 (616)
T ss_pred cceEEecCCC-C----CCCCCCccccchhHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCcccee
Confidence 4556766643 2 1265 899999999999998776553333344466899999999999987 8899999999
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHhhh-hhcCCCCCCcchhhchHHHHHHHHHHHHccCC-------CCCC----Ccc
Q psy12312 151 GDKSNHGLPELNASSIGMAKAALEAMNEL-DLFGARGGPSSVIHVLADEAQKCQAVLQSMLP-------RESS----SKE 218 (1045)
Q Consensus 151 r~k~N~g~~e~~asSigMa~AALeai~~~-~lfG~~g~~~svi~v~~D~i~r~~~il~~~Lp-------res~----Ske 218 (1045)
+.+ .|++|.+|+|+||+++..+ +.+|.+. ....|...++.+++ .+.+.+.. +.++ ++.
T Consensus 408 r~G-------~~~~t~a~~~aAL~~aa~lA~~lGd~~-~a~~~~~~Ad~ik~--~i~~~~w~~~~g~F~~~~~~~~~~~~ 477 (616)
T TIGR01577 408 REG-------VFTYTASAVYGGLDAAAAVADKLGEKR-LAQNWKKAAEFIKR--AVEERFWLPERQVFAKGIKLMVLDKT 477 (616)
T ss_pred cCC-------ccCccHHHHHHHHHHHHHHHHHcCChH-HHHHHHHHHHHHHH--HHHHhccCCCCCEEEEeecCCCCCCc
Confidence 865 6899999999999975555 7888653 22344555566644 44444442 3344 789
Q ss_pred cccccchhhh-cCCCCCCCHHHHHHHHHHHHHHhcc--CCceeeccCCCCCCCCCCCCCCCCChhhhhccCCCCcchhhh
Q psy12312 219 LDSGLLSVIS-FPAFAVDDPLLISETREAIVSKLRG--KYGCKRFLRDGYRTPKEDPNRLHYDPLELRMFENIESEWPLF 295 (1045)
Q Consensus 219 vDASLL~ii~-~p~fav~Dp~~~~~T~~~I~~kL~g--~yGvkRY~~Dgy~t~~ed~~r~~Y~~~e~~~feg~E~ewplf 295 (1045)
+|||+|.++. ||+++++|| ++.+|+++|+++|.. .+|++||..|+|. +| ++|.+|
T Consensus 478 vDaSlL~l~~~~g~l~~~Dp-r~v~Tv~~I~~~L~~~~~ggi~RY~~D~y~-------------------~g--~~w~i~ 535 (616)
T TIGR01577 478 IDISILGISVPFNLIAPDDE-RMVKMAEAIEKHLTSPIVGGIKRYENDPYV-------------------GG--NPWILT 535 (616)
T ss_pred ccHHHHhHHHhcCCCCCCCh-HHHHHHHHHHHHhcccCCCeeeCCCCCCCC-------------------CC--CcHHHH
Confidence 9999998876 999999999 999999999999986 5789999999882 23 799999
Q ss_pred HHHHHHHHHHcCCHH-------------HHHHHHHHHHhhhhccCCCceecccccccCcccccccccCCCcceecccCCC
Q psy12312 296 FCYLILDFCFQGDEA-------------RVKEYGEALDKVMVQGEEGMKFVPQLYAVPPEHVDEEYKNPGCVERIALGRC 362 (1045)
Q Consensus 296 ~~~l~i~~i~~G~~e-------------~A~ey~e~L~~~~~~~~~g~~LlPE~Y~V~~~~v~~e~~~p~s~~r~p~gn~ 362 (1045)
++|++..++..|+.+ +|+++++|+.+. .+..|||||+|. |. ++.|.||+
T Consensus 536 T~wla~~~~~~g~~~~~~~~~~~~~~~~~A~~ll~~~~~~----~~~~Gll~Eqvd------------~~--~g~~~g~~ 597 (616)
T TIGR01577 536 TLWLSQLYIKQGRILKALNHNGADIYLQKSKKLLKWVMDH----RTDLGLLPEQVD------------KE--TGKPAWAV 597 (616)
T ss_pred HHHHHHHHHHhcccccccccchhhhHHHHHHHHHHHHHhc----CCCCCCCccccC------------CC--CCCCCCcC
Confidence 999999999998875 899999999998 677779999963 22 56899999
Q ss_pred CccchhHHHHHHHHHh
Q psy12312 363 PLLWAQSLYILGRLLQ 378 (1045)
Q Consensus 363 PllWsqslyi~~~ll~ 378 (1045)
||+|||++||.+.+.+
T Consensus 598 Pl~wSHa~~i~a~~~l 613 (616)
T TIGR01577 598 PLGWSHAMFLLTVLDL 613 (616)
T ss_pred CcccchHHHHHHHHHH
Confidence 9999999999998754
No 6
>KOG3635|consensus
Probab=99.41 E-value=9.4e-14 Score=163.83 Aligned_cols=60 Identities=40% Similarity=0.646 Sum_probs=53.0
Q ss_pred CCcccCCCCc-ccccchhhhhhhcccCCCCCCcchHHHHHHHHH-HHhccCCCCCCCCcccC
Q psy12312 986 GQIDCSSSGG-LLCGGAAFICQHLYDSAPGGSFGTMNYLMRATA-EMLDCFPRDGQIDCSVC 1045 (1045)
Q Consensus 986 dQ~~c~~s~~-~~~~~~~~ic~~~ydsap~g~~gtmtyl~~a~~-~~~~~~~~~~~~~c~~~ 1045 (1045)
||+...++++ +.|++|++||+|||||||||+|||||||+|||| .++++++..++++|+||
T Consensus 1089 dq~~lq~~~~~~~~~~a~~ic~~fYdsaPsG~ygT~tYl~rAv~nl~~~ev~p~ne~~c~i~ 1150 (1150)
T KOG3635|consen 1089 DQKHLQADDTELREDGARGICKHFYDSAPSGEYGTMTYLTRAVANLYLGEVLPNNESDCQIS 1150 (1150)
T ss_pred hhhhhcccchhhhhcchhhHHHHHhcCCCCCccchhHHHHHHHHHHHhcccCCCCCccccCC
Confidence 5777888887 668899999999999999999999999999999 55577777778999986
No 7
>PF06202 GDE_C: Amylo-alpha-1,6-glucosidase ; InterPro: IPR010401 This family includes human glycogen branching enzyme P35573 from SWISSPROT. This enzyme contains a number of distinct catalytic activities. It has been shown for the yeast homologue O93808 from SWISSPROT that mutations in this region disrupt the enzymes Amylo-alpha-1,6-glucosidase (3.2.1.33 from EC).; GO: 0004135 amylo-alpha-1,6-glucosidase activity, 0005978 glycogen biosynthetic process
Probab=98.13 E-value=0.00037 Score=80.62 Aligned_cols=291 Identities=17% Similarity=0.236 Sum_probs=153.2
Q ss_pred chhHHHHHHHHH---hcHHHHHHHHHHHHHHHhcchhhHHhhhccCCCCcccccccccCCCccccCCcccchhhhhHHHH
Q psy12312 28 LRTNVDTRLGFF---IGRYSCVKLMRGLLMAMMQQKHKVEQFKITQNPLDALHAKYHSATGETVVGDTEWGHLQIDAISL 104 (1045)
Q Consensus 28 VRDa~yt~~Al~---~l~~~A~k~mr~LL~~~m~q~~kve~fk~~~~~~~~lh~kY~~~tg~pVvGn~aw~hlQlDa~gl 104 (1045)
=||+..++.+++ +..+.|+..+..+..... .| .+-..+.. +..| .|++ .|++-.
T Consensus 32 GRDt~Isl~gl~l~~~~~~~a~~~L~~~~~~~~----------~G-----~ipn~~~~-~~~~-----~Y~s--~Dat~w 88 (370)
T PF06202_consen 32 GRDTFISLPGLLLSPGRFEEARNILATFAGTQR----------HG-----LIPNELRD-GEEP-----RYNS--VDATLW 88 (370)
T ss_pred ccHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhh----------cC-----cccCcccC-CCCC-----CCCC--CccHHH
Confidence 899998876665 367777775543332221 11 11111222 2233 2555 599999
Q ss_pred HHHHHHHHHHcCCceeeCcchHHHHHHHHHHHHHhCC-----CCCCCCcccCC---------CCCCCCC---cc--hhhH
Q psy12312 105 YLLILAQMTASGLQIVFCLDEVAFIQNLVFYIESAYC-----IPDYGIWERGD---------KSNHGLP---EL--NASS 165 (1045)
Q Consensus 105 ~LlaL~qm~~sGl~ii~t~dev~fIqnLV~yie~~wr-----~PD~GIWErr~---------k~N~g~~---e~--~asS 165 (1045)
|+.++.++.+..-...+-.+.+..|++++.+..+.-+ .++.|+=.-++ -.|+|.+ +. -+-=
T Consensus 89 fl~~l~~Y~~~t~D~~~l~~~~~~i~~il~~~~~g~~~~~~~d~~~gl~~~~~~~~~~tWmD~~~~g~~~tpr~g~~vEI 168 (370)
T PF06202_consen 89 FLIALQEYYRWTGDYSFLRELYPAIEEILEWYADGTDFGIRVDPEDGLIYSGNGLNNQTWMDARNDGRPVTPRDGAAVEI 168 (370)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhCCCCccccccCCCeeecCCCCCCCCccccccCCccccCCCCcchHH
Confidence 9999999876532222122334444445555443222 33334333222 2233321 11 1233
Q ss_pred HHHHHHHHHHHhhh-hhcCCCCCCcchhhchHHHHHHHHHHHHccC-CCC-------CCCccccccc----chhhhcCCC
Q psy12312 166 IGMAKAALEAMNEL-DLFGARGGPSSVIHVLADEAQKCQAVLQSML-PRE-------SSSKELDSGL----LSVISFPAF 232 (1045)
Q Consensus 166 igMa~AALeai~~~-~lfG~~g~~~svi~v~~D~i~r~~~il~~~L-pre-------s~SkevDASL----L~ii~~p~f 232 (1045)
-++.+.||..+..+ ..++.+ ....+...++.+++. ..+.+. ++. .+++..|-++ +...+.|.
T Consensus 169 qal~y~AL~~~~~la~~~~~~--~a~~~~~~A~~lk~~--F~~~FW~~~~g~~~d~ld~~~~~d~~irpN~~~a~~L~~- 243 (370)
T PF06202_consen 169 QALWYNALRFAAELAEKFGDE--LAARYREWAERLKES--FEKRFWDEDRGYYADALDGDKEPDDSIRPNQLIALSLPP- 243 (370)
T ss_pred HHHHHHHHHHHHHHHhhcCCc--hHHHHHHHHHHHHHH--HHHHHcCCCCCEEEEEecCCCCCCcccccCchhHHhcCC-
Confidence 56788899987776 445544 222344444444332 111121 221 1233344432 21122222
Q ss_pred CCCCHHHHHHHHHHHHHHhccCCcee-------eccCCCCCCCCCCCCCCCCChhhhhccCCCCcchhhhHHHHHHHHHH
Q psy12312 233 AVDDPLLISETREAIVSKLRGKYGCK-------RFLRDGYRTPKEDPNRLHYDPLELRMFENIESEWPLFFCYLILDFCF 305 (1045)
Q Consensus 233 av~Dp~~~~~T~~~I~~kL~g~yGvk-------RY~~Dgy~t~~ed~~r~~Y~~~e~~~feg~E~ewplf~~~l~i~~i~ 305 (1045)
.+=|+++....++.++++|...+|++ ||.. .|........ .-|.. -+.||-...+.+...+.
T Consensus 244 ~~l~~~~a~~vl~~~~~~L~tp~GlRTLs~~~~~Y~p-~y~g~~~~rd-~sYHn---------GsvWpw~~g~~~~al~r 312 (370)
T PF06202_consen 244 GLLDPEQAKKVLDRVEEELLTPWGLRTLSPSDPRYNP-IYEGDQDSRD-MSYHN---------GSVWPWDNGIYAEALLR 312 (370)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCCchhcccCCCCCcCC-CCCCccccCc-ccccC---------CCcCcCcHHHHHHHHHH
Confidence 22245588888888999999999984 5543 1211111111 11332 34899888888888888
Q ss_pred cCC-HHHHH----HHHHHHHhhhhccCCCceecccccccCcccccccccCCCcceecccCCCCccchhHHHH
Q psy12312 306 QGD-EARVK----EYGEALDKVMVQGEEGMKFVPQLYAVPPEHVDEEYKNPGCVERIALGRCPLLWAQSLYI 372 (1045)
Q Consensus 306 ~G~-~e~A~----ey~e~L~~~~~~~~~g~~LlPE~Y~V~~~~v~~e~~~p~s~~r~p~gn~PllWsqslyi 372 (1045)
.|. .+++. .+++.+...+. ..+.+-+||.|.= +| ...|.|-.||+||-+..|
T Consensus 313 ~g~~~~~~~~~~~~ll~~~~~~~~--~~~~~~lpEl~dg----------~~---~~~p~gc~~QAWS~a~il 369 (370)
T PF06202_consen 313 YGFDEEEAIREAKSLLEGFEEHLQ--EFGLGRLPELFDG----------DP---PHYPRGCSPQAWSVAEIL 369 (370)
T ss_pred hCccchHHHHHHHHHHHHHHHHHh--hccCCCcchhcCC----------CC---CCCCCCCHHHHHHHHHhh
Confidence 776 34444 44444444443 4677799999851 22 237888899999998765
No 8
>COG3408 GDB1 Glycogen debranching enzyme [Carbohydrate transport and metabolism]
Probab=97.97 E-value=0.00087 Score=82.58 Aligned_cols=292 Identities=16% Similarity=0.160 Sum_probs=159.9
Q ss_pred chhHHHHHHHHH--hcHHHHHHHHHHHHHHHhcchhhHHhhhccCCCCcccccccccCCCccccCCcccchhhhhHHHHH
Q psy12312 28 LRTNVDTRLGFF--IGRYSCVKLMRGLLMAMMQQKHKVEQFKITQNPLDALHAKYHSATGETVVGDTEWGHLQIDAISLY 105 (1045)
Q Consensus 28 VRDa~yt~~Al~--~l~~~A~k~mr~LL~~~m~q~~kve~fk~~~~~~~~lh~kY~~~tg~pVvGn~aw~hlQlDa~gl~ 105 (1045)
=||+..++.++. |..+.|+..++-++.. . .+..-+|.-..-..+.|+ |+ ..|++=++
T Consensus 286 GRD~lIS~lgll~~g~~elArg~L~~~a~~----~----------~~GkIPhe~~~~~~~~~~-----Y~--tvD~t~~~ 344 (641)
T COG3408 286 GRDTLISALGLLLVGRFELARGTLNTLARY----S----------EPGKIPHEILLSIPGEPY-----YN--TVDATPLF 344 (641)
T ss_pred chHHHHHHHHHHhcCCHHHHHHHHHHHHhh----c----------cCCCCcchhhhcCCCcce-----ec--cCCCcHHH
Confidence 499999999876 4788888765444433 2 111123332122233444 33 78888888
Q ss_pred HHHHHHHHHcCCceeeCcchHHHHHHHHHHHHHh--------------------CCCCCCCCcccCCCCCCCCCcchhhH
Q psy12312 106 LLILAQMTASGLQIVFCLDEVAFIQNLVFYIESA--------------------YCIPDYGIWERGDKSNHGLPELNASS 165 (1045)
Q Consensus 106 LlaL~qm~~sGl~ii~t~dev~fIqnLV~yie~~--------------------wr~PD~GIWErr~k~N~g~~e~~asS 165 (1045)
+.++..+...-....+..+-|..++..++++.+. |..-.-++|-...+ +-+.-+++
T Consensus 345 i~~~~~y~~~t~d~~~i~e~~~~v~~a~d~~~~~~~~~~~~~~~~l~~~~~~~tW~Ds~~~~~~~~~~-~g~pi~i~--- 420 (641)
T COG3408 345 IYLLGAYLKYTGDTEFIRELWPSVGAALDWILKGFDFGFDTYGDGLLEGGSNQTWMDSGDDIFAVTPR-AGKPVAIN--- 420 (641)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhcCCccceecCcccccCCCCCCCeecCCccccccCC-CCCceeHH---
Confidence 8888876655323333345577888888887764 33333334433322 11222222
Q ss_pred HHHHHH-HHHHHhhh-hhcCCCCCCcchhhchHHHHHHHHHHHHccCC----------CCCC--CcccccccchhhhcCC
Q psy12312 166 IGMAKA-ALEAMNEL-DLFGARGGPSSVIHVLADEAQKCQAVLQSMLP----------RESS--SKELDSGLLSVISFPA 231 (1045)
Q Consensus 166 igMa~A-ALeai~~~-~lfG~~g~~~svi~v~~D~i~r~~~il~~~Lp----------res~--SkevDASLL~ii~~p~ 231 (1045)
.+|. |+++...+ ++++..+... .+.-.+ +.+.++... +.-. +.-++.--...+..++
T Consensus 421 --al~~~~~~a~~~~a~ll~~~~~~~-~~~~~a------~~l~~~F~~~fw~~~~f~dl~~~~~~~~~r~~~~~a~~l~~ 491 (641)
T COG3408 421 --ALQYYALKAALRLANLLGDEEDAA-RLEKIA------RRLKESFEAKFWNPTGFYDLALDDKDVPIRPNFSNAIHLLY 491 (641)
T ss_pred --HHHHHHHHHHHHHHHHhcccccHH-HHHHHH------HHHHHHHHHHhhCccchHhhhccCCCcccCccceecccccc
Confidence 3344 66665554 6677223222 222222 222222211 1111 1222211111111222
Q ss_pred CCCCCHHHHHHHHHHHHHHhccCCceeeccCCCCCCCCCCCCCCCCChhhhhccCCCCcchhhhHHHHHHHHHHcCCHH-
Q psy12312 232 FAVDDPLLISETREAIVSKLRGKYGCKRFLRDGYRTPKEDPNRLHYDPLELRMFENIESEWPLFFCYLILDFCFQGDEA- 310 (1045)
Q Consensus 232 fav~Dp~~~~~T~~~I~~kL~g~yGvkRY~~Dgy~t~~ed~~r~~Y~~~e~~~feg~E~ewplf~~~l~i~~i~~G~~e- 310 (1045)
-..-++++. .-++-++++|...+|++.=..+... -+..||.. -..||.-+.+.+..+...|..+
T Consensus 492 ~gi~~~~~~-~~~~l~e~~lltp~GlRTLS~~dp~-----Y~p~yYH~---------GtVWP~~~gifv~g~~r~G~~~~ 556 (641)
T COG3408 492 TGIVDPERA-VIIRLAEEDLLTPWGLRTLSPDDPR-----YNPMYYHN---------GTVWPHDTGIFVLGLRRYGLKDI 556 (641)
T ss_pred cccCchHHH-HHHHHHHHhccCCccccccCCCCCC-----cCCCcccC---------CCcccchHHHHHHHHHHcCcccH
Confidence 234455344 5667788999999999866543220 01122332 3489999988888888899888
Q ss_pred HHHHHHHHHHhhhhccCCCceecccccccCcccccccccCCCcceecccCCCCccchhHHHHHHHHHhccCCCCCC
Q psy12312 311 RVKEYGEALDKVMVQGEEGMKFVPQLYAVPPEHVDEEYKNPGCVERIALGRCPLLWAQSLYILGRLLQHGFLATGE 386 (1045)
Q Consensus 311 ~A~ey~e~L~~~~~~~~~g~~LlPE~Y~V~~~~v~~e~~~p~s~~r~p~gn~PllWsqslyi~~~ll~~~~l~~~d 386 (1045)
++.+.++++.+. ++ .+=+||.|+-. .| ..|.|.+||+||++.++.+.+..-=-++|..
T Consensus 557 ~~~~~~~~~~~~----a~-~~~~pE~f~g~---------~~----~~P~gc~~QAWS~a~~l~~~~~~~lg~~p~~ 614 (641)
T COG3408 557 QALELFDGLFSS----AS-PGRIPELFDGD---------SP----NRPKGCYPQAWSSAEILRSLLQGLLGIKPDG 614 (641)
T ss_pred HHHHHHHHHhhh----cc-cCCCccccccc---------CC----CCCCCcchhhhhHHHHHHHHHHHHhCCCcCc
Confidence 888888888777 22 22249998643 11 2388999999999999987664333334433
No 9
>PF06824 DUF1237: Protein of unknown function (DUF1237); InterPro: IPR008313 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.; PDB: 2P0V_B 3QSP_B 3QPF_A 3QRY_A 3ON6_A 3QT9_A 3QT3_A 2NVP_A 3P2C_B.
Probab=97.11 E-value=0.0011 Score=77.50 Aligned_cols=308 Identities=20% Similarity=0.244 Sum_probs=151.0
Q ss_pred chhHHHHHHHHHh---cHHHHHHHHHHHHHHHhcchhh---HHhhhcc-CCCCcccc-cccccCCCccccCCcccc---h
Q psy12312 28 LRTNVDTRLGFFI---GRYSCVKLMRGLLMAMMQQKHK---VEQFKIT-QNPLDALH-AKYHSATGETVVGDTEWG---H 96 (1045)
Q Consensus 28 VRDa~yt~~Al~~---l~~~A~k~mr~LL~~~m~q~~k---ve~fk~~-~~~~~~lh-~kY~~~tg~pVvGn~aw~---h 96 (1045)
+||++--+..-.. ...+..++++|+++.=++.... -..|... .+....-+ ..+..+...+ -.+..|- -
T Consensus 46 LRDS~~Q~~pYl~l~~~d~~l~~li~G~I~rQa~~I~~dPYaNAF~~~~~s~~~~~~~~~~~~D~~~~-~~~~~~v~ErK 124 (424)
T PF06824_consen 46 LRDSAAQLRPYLPLAKEDPSLARLIRGVINRQARYILIDPYANAFNPPPESGIPPNGNGHWQSDTTEM-PYDPPWVWERK 124 (424)
T ss_dssp HHHHHHHCGGGGGGGCC-HHHHHHHHHHHHHHHHHHHH-TT-SEEESS-----TSS-TSGCCGSBS-------TTEEE--
T ss_pred ccccHhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcchhhcccCCcccccccccccCCCCCCccCC-CcCCCceeeec
Confidence 9999987766554 4456667777776544333210 0111000 00000000 1122222221 0012232 2
Q ss_pred hhhhHHHHHHHHHHHHHHc-CCceeeCcchHHHHHHHHHHHHHhCC---CCCCC------CcccCCC------CC-----
Q psy12312 97 LQIDAISLYLLILAQMTAS-GLQIVFCLDEVAFIQNLVFYIESAYC---IPDYG------IWERGDK------SN----- 155 (1045)
Q Consensus 97 lQlDa~gl~LlaL~qm~~s-Gl~ii~t~dev~fIqnLV~yie~~wr---~PD~G------IWErr~k------~N----- 155 (1045)
.-+|-...||...+.+.+. |-.-.|+.+=++.++.+|+-++.-=+ .+|.. -|+|.+. .|
T Consensus 125 yElDSL~~~l~La~~y~~~Tgd~~~f~~~~~~A~~~il~~~~~eq~~t~~~~~~~~~s~Y~F~R~~~~~tdtl~~~G~G~ 204 (424)
T PF06824_consen 125 YELDSLCYFLQLAYQYWKATGDTSFFDEDWLRAVRLILDTWRTEQRPTYDEDHEGLPSPYRFQRPTCRPTDTLPNDGRGN 204 (424)
T ss_dssp --HHHHHHHHHHHHHHHHHH--GTTSSHHHHHHHHHHHHHHHHTTG------SSSCS-S---BESBSSGGGS-HHHHT-S
T ss_pred chhhhhhHHHHHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHhhhccccccCCCcceeeccCCCCCccccCCCcCC
Confidence 7799999999888888766 43333444445666666666554211 12222 1554210 00
Q ss_pred ----CC-------------CCcchhhHHHHHHHHHHHHhhh-hhcCCCC--CCcchhhchHHHHHHHHHHHHc-cCC--C
Q psy12312 156 ----HG-------------LPELNASSIGMAKAALEAMNEL-DLFGARG--GPSSVIHVLADEAQKCQAVLQS-MLP--R 212 (1045)
Q Consensus 156 ----~g-------------~~e~~asSigMa~AALeai~~~-~lfG~~g--~~~svi~v~~D~i~r~~~il~~-~Lp--r 212 (1045)
.| .-..+..|-.|++++|+.+..+ ...+... .-......++++|++ .|.+. +.. .
T Consensus 205 pv~~tGli~S~FRPSDDa~~y~yliPsNm~a~v~L~~laei~~~~~~~~~~~la~~~~~la~eI~~--gI~~~giv~h~~ 282 (424)
T PF06824_consen 205 PVAYTGLIWSGFRPSDDACIYPYLIPSNMFAVVALEYLAEILRALGWDDSAELAERARALADEIRA--GIEKHGIVEHPK 282 (424)
T ss_dssp ----SSS-B-SB-TTSSB-SSSEEHHHHHHHHHHHHHHHHHHHHTT-THHHHHHHHHHHHHHHHHH--HHHHHSEEEETT
T ss_pred cCCCCCceecCcCCCCcchhcCcCChHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHH--HHHHheEEeCCC
Confidence 11 1246788999999999976665 4344221 011111223333333 22221 111 0
Q ss_pred ----------CCCCccc--cc---ccchhhhcCCCCCCCHHHHHHHHHHHHHHhccCCceeeccCCCCCCCCCCCCCCCC
Q psy12312 213 ----------ESSSKEL--DS---GLLSVISFPAFAVDDPLLISETREAIVSKLRGKYGCKRFLRDGYRTPKEDPNRLHY 277 (1045)
Q Consensus 213 ----------es~Skev--DA---SLL~ii~~p~fav~Dp~~~~~T~~~I~~kL~g~yGvkRY~~Dgy~t~~ed~~r~~Y 277 (1045)
..|+..+ || |||++|.+||.+.+|| .+++|++.|.++=...|.++--.-.|-+.
T Consensus 283 ~g~iyAYEVDG~G~~~~mDDANvPSLLSlPylGf~~~~Dp-vYqnTR~~iLS~~~NPyy~~G~~~~GiGs---------- 351 (424)
T PF06824_consen 283 FGKIYAYEVDGFGNHLLMDDANVPSLLSLPYLGFCSKDDP-VYQNTRRFILSPEGNPYYFSGKAASGIGS---------- 351 (424)
T ss_dssp TEEEE-SEE-SSS-EE----SSSS-STTHHHHTSS-TT-H-HHHHHHHHHTSTT-STTEEEESSEEEE------------
T ss_pred CCeEEEEEecCCCCccccCCCCCchHhhhhhcCCCCCCcH-HHHHHHHHHhCCCCCCccccCCCcCCCCC----------
Confidence 1232221 44 8999999999999999 99999999966632333332111111100
Q ss_pred ChhhhhccCCCCcchhhhHHHHHHHHHHcCCHHHHHHHHHHHHhhhhccCCCceecccccccCcccccccccCCCcceec
Q psy12312 278 DPLELRMFENIESEWPLFFCYLILDFCFQGDEARVKEYGEALDKVMVQGEEGMKFVPQLYAVPPEHVDEEYKNPGCVERI 357 (1045)
Q Consensus 278 ~~~e~~~feg~E~ewplf~~~l~i~~i~~G~~e~A~ey~e~L~~~~~~~~~g~~LlPE~Y~V~~~~v~~e~~~p~s~~r~ 357 (1045)
|+ -+....|||-. +..++-..+.++.++.+++|... ..|.+++-|.+.|. +|..-+|.
T Consensus 352 -PH-----t~~~~iWPmsl---~~~~lTs~d~~Ei~~~L~~L~~t----~~gtGlmHES~d~~---------~~~~~TR~ 409 (424)
T PF06824_consen 352 -PH-----TPPGYIWPMSL---AMQGLTSDDDEEIRECLRMLKRT----TAGTGLMHESFDVD---------DPSKFTRP 409 (424)
T ss_dssp -TT-----T-TTEEEHHHH---HHHHHT-S-HHHHHHHHHHHHHT----STTSSS--SEEETT---------EEEEEE-S
T ss_pred -CC-----CCCCCccHHHH---HHHHhcCCCHHHHHHHHHHHHhc----cCCCCceeccccCC---------CCcccCcH
Confidence 00 12334699876 66677788888888888888776 67888999997665 33222232
Q ss_pred ccCCCCccchhHHHHHHHH
Q psy12312 358 ALGRCPLLWAQSLYILGRL 376 (1045)
Q Consensus 358 p~gn~PllWsqslyi~~~l 376 (1045)
= |+|+.++|--..|
T Consensus 410 W-----FaWaNslF~elil 423 (424)
T PF06824_consen 410 W-----FAWANSLFGELIL 423 (424)
T ss_dssp ------BHHHHHHHHHHHH
T ss_pred H-----HHHHHHHHHHHhh
Confidence 2 9999999865543
No 10
>PF00723 Glyco_hydro_15: Glycosyl hydrolases family 15; InterPro: IPR011613 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 15 GH15 from CAZY comprises enzymes with several known activities; glucoamylase (3.2.1.3 from EC); alpha-glucosidase (3.2.1.20 from EC); glucodextranase (3.2.1.70 from EC). Glucoamylase (GA) catalyses the release of D-glucose from the non-reducing ends of starch and other oligo- or poly-saccharides. Studies of fungal GA have indicated 3 closely-clustered acidic residues that play a role in the catalytic mechanism []. This region is also conserved in a recently sequenced bacterial GA []. The 3D structure of the pseudo-tetrasaccharide acarbose complexed with glucoamylase II(471) from Aspergillus awamori var. X100 has been determined to 2.4A resolution []. The protein belongs to the mainly-alpha class, and contains 19 helices and 9 strands. This protein is found in higher organisms, and is represented by phosphorylase kinase subunits.; GO: 0004339 glucan 1,4-alpha-glucosidase activity, 0005976 polysaccharide metabolic process; PDB: 1GAI_A 1GAH_A 1LF6_B 1LF9_A 3EQA_A 1AYX_A 2F6D_A 2FBA_A 1DOG_A 1GLM_A ....
Probab=96.85 E-value=2.3e-05 Score=92.26 Aligned_cols=129 Identities=26% Similarity=0.304 Sum_probs=82.6
Q ss_pred cccccchhhhcCCCCCCCHHHHHHHHHHHHHHhccCCceee-ccCCCCCCCCCCCCCCCCChhhhhccCCCCcchhhhHH
Q psy12312 219 LDSGLLSVISFPAFAVDDPLLISETREAIVSKLRGKYGCKR-FLRDGYRTPKEDPNRLHYDPLELRMFENIESEWPLFFC 297 (1045)
Q Consensus 219 vDASLL~ii~~p~fav~Dp~~~~~T~~~I~~kL~g~yGvkR-Y~~Dgy~t~~ed~~r~~Y~~~e~~~feg~E~ewplf~~ 297 (1045)
++.|+-..-.++. ..+.+++..|.++|.++|.+.+|++| |..... +|-.
T Consensus 194 L~~a~~~a~~~g~--~~~~~~~~~~a~~i~~~l~~~~~~~~g~~~~~~----------~~~~------------------ 243 (448)
T PF00723_consen 194 LLRAANLAELFGD--PGDAERWRETADEIRERLEGWYGLERGFWPEFG----------YFIR------------------ 243 (448)
T ss_dssp HHHHHHHHHHTT---HHHHHHHHHHHHHHHHHHHHHHEESGGGBTTSS----------BESE------------------
T ss_pred HHHHHHHHHHcCC--chHHHHHHHHHHHHHHHhhhhccccccccCCCC----------eEEE------------------
Confidence 3444333334442 33455899999999999999999877 322110 1110
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhhhccCCCceecccccccCcccccccccCCCcceecccCCCCccchhHHHHHHHHH
Q psy12312 298 YLILDFCFQGDEARVKEYGEALDKVMVQGEEGMKFVPQLYAVPPEHVDEEYKNPGCVERIALGRCPLLWAQSLYILGRLL 377 (1045)
Q Consensus 298 ~l~i~~i~~G~~e~A~ey~e~L~~~~~~~~~g~~LlPE~Y~V~~~~v~~e~~~p~s~~r~p~gn~PllWsqslyi~~~ll 377 (1045)
....+.++.+.+..+.+.|... +.++|+.++++++.++.|+.+|+| |.+|+++.+|+..|.
T Consensus 244 ---~~~~~~~~~~~~~~~~~~lD~s-------lll~~~~~~~~~~d~~~~~~~p~s---------p~~~~T~~~i~~~l~ 304 (448)
T PF00723_consen 244 ---IYGSFSGNSEQVQGYRSGLDAS-------LLLLPLFGFVPPDDVDDERFQPHS---------PRVLNTLKAIEEELR 304 (448)
T ss_dssp ---ESSSEETTTCCEEEGSGS-BTH-------HHHHHHTTSSTTT-S-TTTTTTTS---------HHHHHHHHHHHHCTT
T ss_pred ---ecCCccccchhhhcchhhHHHH-------HHHHHHccCCCccccccccccccc---------HHHHHHHHHHHHHHH
Confidence 0000223332222222222222 237999999999999999999997 899999999999999
Q ss_pred hccCCCCCCCCCCcccccc
Q psy12312 378 QHGFLATGELDPLNRRLCS 396 (1045)
Q Consensus 378 ~~~~l~~~diDPl~R~~~~ 396 (1045)
.++.|.++++||+-+|.+.
T Consensus 305 ~~~~in~g~~~~~~~RY~~ 323 (448)
T PF00723_consen 305 VDYPINPGDIDPGIGRYPE 323 (448)
T ss_dssp TTEGGGTT-STTSEBSCTT
T ss_pred HhcCCCccccCccceeccc
Confidence 9999999999996666655
No 11
>PLN03005 beta-fructofuranosidase
Probab=96.75 E-value=0.35 Score=57.91 Aligned_cols=336 Identities=14% Similarity=0.195 Sum_probs=180.5
Q ss_pred hhhhhhhccccCCCcccccC-C---C--------chhHHHHHHHHHh-cHHHHHHHHHHHHHHHhcchhhHHhhhccCCC
Q psy12312 6 DKEALVSVLTDSLINLVPAQ-T---H--------LRTNVDTRLGFFI-GRYSCVKLMRGLLMAMMQQKHKVEQFKITQNP 72 (1045)
Q Consensus 6 ~~~~~il~~Q~p~tGl~pAs-~---~--------VRDa~yt~~Al~~-l~~~A~k~mr~LL~~~m~q~~kve~fk~~~~~ 72 (1045)
..++-|+.||.-.-|-++|+ + + +||++-|++|+.. =+.+-+|.+.-.+..+..+..+++.++.++-.
T Consensus 91 ~l~~s~v~~~g~pvGtvAA~d~~~~~~lNY~qvF~RDfvpsaLafLl~Ge~eIVrnFl~~~L~Lq~~ek~~d~~q~g~G~ 170 (550)
T PLN03005 91 ALRRSMVFFRGQPVGTLAAVDNTTDEVLNYDQVFVRDFVPSALAFLMNGEPDIVKHFLLKTLQLQGWEKRVDRFKLGEGV 170 (550)
T ss_pred HHHhheEEECCccceeeeecCCccccccCCCceeecccHHHHHHHHHCCCHHHHHHHHHHHHHHhhhhhhhhcccCCCCC
Confidence 45677778887767988872 1 1 9999999999874 23344444433333333444557667655443
Q ss_pred Cc-cccccccc--CCCc-cc-cCCcccch-hhhhHHHHHHHHHHHHHHcCCceeeCcchHHHHHHHHHHH----HH----
Q psy12312 73 LD-ALHAKYHS--ATGE-TV-VGDTEWGH-LQIDAISLYLLILAQMTASGLQIVFCLDEVAFIQNLVFYI----ES---- 138 (1045)
Q Consensus 73 ~~-~lh~kY~~--~tg~-pV-vGn~aw~h-lQlDa~gl~LlaL~qm~~sGl~ii~t~dev~fIqnLV~yi----e~---- 138 (1045)
.+ ..+-.++. .++. .+ +|+.+-|- .=+|+.--++.++..+.++.....+ -+-.-+|.-+..| ..
T Consensus 171 mPaSfkv~~~p~~~~~~l~aDfG~~aIGRv~pVDS~LWWIIllraY~k~tgD~s~--~e~pevQrgi~lil~lcLa~~Fd 248 (550)
T PLN03005 171 MPASFKVLHDPIRETDNIVADFGESAIGRVAPVDSGFWWIILLRAYTKSTGDLTL--SETPECQKGMKLILSLCLAEGFD 248 (550)
T ss_pred cCceeeecccccCCCccccccccccccccccccchhhHHHHHHHHHHhhccchhh--hhChHHHHHHHHHHHHhcccccC
Confidence 33 33333433 2221 12 66665554 4589988899999988887433222 1224455555555 22
Q ss_pred h---CCCCCCCCcccCCCCCCCCCcchhhHHHHHHHHHHHHhhhhhcCCCCCCcchhh------------------chHH
Q psy12312 139 A---YCIPDYGIWERGDKSNHGLPELNASSIGMAKAALEAMNELDLFGARGGPSSVIH------------------VLAD 197 (1045)
Q Consensus 139 ~---wr~PD~GIWErr~k~N~g~~e~~asSigMa~AALeai~~~~lfG~~g~~~svi~------------------v~~D 197 (1045)
. .-.||.+-|=-|.= |..-+=...-+.=+.||++.+.+ +-..+.....+. ++..
T Consensus 249 ~~ptLlvpDgs~miDRrM---gv~G~pLeiQaLfy~ALR~~~~~--L~~~~~~~~~i~~i~~rl~~L~~h~r~yyWld~~ 323 (550)
T PLN03005 249 TFPTLLCADGCSMIDRRM---GVYGYPIEIQALFFMALRSALSM--LKPDGDGREFIERIVKRLHALSFHMRNYFWLDHQ 323 (550)
T ss_pred CCceEeccCCcccccccc---ccCCccHHHHHHHHHHHHHHHHh--cCccchhHHHHHHHHHHHHHHHHHHHHheecchh
Confidence 2 34799999986422 11123334445556677665432 111111100010 0001
Q ss_pred HHHH-----H----HH-------H-------HHccCCCCCC-----------Cccccc--ccchhhhcCCCCCCCHHHHH
Q psy12312 198 EAQK-----C----QA-------V-------LQSMLPRESS-----------SKELDS--GLLSVISFPAFAVDDPLLIS 241 (1045)
Q Consensus 198 ~i~r-----~----~~-------i-------l~~~Lpres~-----------SkevDA--SLL~ii~~p~fav~Dp~~~~ 241 (1045)
..++ . .. . +...+|...| +-..|| =+|++ +++ .-+++...
T Consensus 324 ~ln~iyr~kteey~~~a~NkfNi~pd~ip~wl~dwlp~~gGY~igNv~pa~~dfRffslGNllAI-Ls~---Lat~~Qs~ 399 (550)
T PLN03005 324 NLNDIYRFKTEEYSHTAVNKFNVMPDSIPEWVFDFMPLRGGYFVGNVGPAHMDFRWFALGNCVSI-LSS---LATPDQSM 399 (550)
T ss_pred hhhhhhhccHhhhchhhhhccccCCccchhhhhhhcccCCceeeeecccccCCceehhhhhHHHH-Hhc---cCCHHHHH
Confidence 1110 0 00 0 0111221100 112221 12221 222 45666677
Q ss_pred HHHHHHH---HHhccCC--c-eeecc--CCCCCC-CCCCCCCCCCChhhhhccCCCCcchhhhHHHHHHHHHHcCCHHHH
Q psy12312 242 ETREAIV---SKLRGKY--G-CKRFL--RDGYRT-PKEDPNRLHYDPLELRMFENIESEWPLFFCYLILDFCFQGDEARV 312 (1045)
Q Consensus 242 ~T~~~I~---~kL~g~y--G-vkRY~--~Dgy~t-~~ed~~r~~Y~~~e~~~feg~E~ewplf~~~l~i~~i~~G~~e~A 312 (1045)
+.++-|+ ++|.+.- - |+ -. .|-.+. .--||...+|.- +.-|.||...-++..+++..|+.+.|
T Consensus 400 aIm~lIe~~w~~Lv~~MPlkIcy-Pa~e~~eWri~tG~dpKN~PWSY-------HNGGsWP~Llw~~~aA~iK~gr~~lA 471 (550)
T PLN03005 400 AIMDLLEHRWEELVGEMPLKICY-PCLEGHEWRIVTGCDPKNTRWSY-------HNGGSWPVLLWQLTAACIKTGRPQIA 471 (550)
T ss_pred HHHHHHHHHHHHHhccCCcceee-cccCCccceecccCCCCCCCccc-------cCCCcchHHHHHHHHHHHHcCCHHHH
Confidence 7777776 3566542 1 22 11 121111 012222222221 13469999886777777889999999
Q ss_pred HHHHHHHHhhhhccCCCceecccccccCcccccccccCCCcceecccCC---CCccchhHHHHHHHHHhc
Q psy12312 313 KEYGEALDKVMVQGEEGMKFVPQLYAVPPEHVDEEYKNPGCVERIALGR---CPLLWAQSLYILGRLLQH 379 (1045)
Q Consensus 313 ~ey~e~L~~~~~~~~~g~~LlPE~Y~V~~~~v~~e~~~p~s~~r~p~gn---~PllWsqslyi~~~ll~~ 379 (1045)
++.++.++..+. .++ .||.|.-. +..|.|. .=|.||=|.|+++..+++
T Consensus 472 ~ral~~ae~rl~--~d~---WpEyydGk--------------tGr~iGkqar~~QTWSiAG~Lla~~~L~ 522 (550)
T PLN03005 472 RRAVDLIESRLH--RDC---WPEYYDGK--------------LGRYVGKQARKYQTWSIAGYLVAKMLLE 522 (550)
T ss_pred HHHHHHHHHHhh--hcC---chhhcCCC--------------CCcccceeccccCchHHHHHHHHHHHhh
Confidence 999999999876 345 39998533 5577777 679999999999999887
No 12
>PLN02973 beta-fructofuranosidase
Probab=96.34 E-value=0.61 Score=56.01 Aligned_cols=340 Identities=14% Similarity=0.201 Sum_probs=184.6
Q ss_pred hhhhhhhccccCCCccccc---CCC--------chhHHHHHHHHHh-cHHHHHHHHHHHHHHHhcch--hhHHhhhccCC
Q psy12312 6 DKEALVSVLTDSLINLVPA---QTH--------LRTNVDTRLGFFI-GRYSCVKLMRGLLMAMMQQK--HKVEQFKITQN 71 (1045)
Q Consensus 6 ~~~~~il~~Q~p~tGl~pA---s~~--------VRDa~yt~~Al~~-l~~~A~k~mr~LL~~~m~q~--~kve~fk~~~~ 71 (1045)
..++-|+.||.-.-|-++| +++ +||++-|++|+.. =+.+-+|.+ ++.++-=|+ .++..|+.++-
T Consensus 113 ~l~~s~v~~~g~pvgtvAa~d~~~~~lNY~qVFiRDfVpsaLafLl~Ge~eIVrnF--l~~TL~lq~~ektld~~q~g~G 190 (571)
T PLN02973 113 ALRRSMVYFRGQPVGTIAAVDNSEEKLNYDQVFVRDFVPSALAFLMNGEPDIVKNF--LLKTLRLQSWEKKIDRFQLGEG 190 (571)
T ss_pred HHHhheEEECCeeeeeeeccCCccccccCcchhhhccHHHHHHHHHCCCHHHHHHH--HHHHHhhhhhHHHHHhcccCCC
Confidence 4566777777666688887 222 9999999999874 233444433 444544333 24666665544
Q ss_pred CCc-ccccccccCCC---ccc-cCCcccch-hhhhHHHHHHHHHHHHHHcCCceeeCcchHHHHHHHHHHHHH-------
Q psy12312 72 PLD-ALHAKYHSATG---ETV-VGDTEWGH-LQIDAISLYLLILAQMTASGLQIVFCLDEVAFIQNLVFYIES------- 138 (1045)
Q Consensus 72 ~~~-~lh~kY~~~tg---~pV-vGn~aw~h-lQlDa~gl~LlaL~qm~~sGl~ii~t~dev~fIqnLV~yie~------- 138 (1045)
..+ ..+-.++...+ ..+ +|+.+-|- .=+|+.--++.++..+.++.... +.-+..-+|.-+..|..
T Consensus 191 ~mPaSfkv~~~p~~~~e~l~aDfG~~aIGRV~pVDS~LWWIIllraY~k~TgD~--s~~e~pevQrgi~lil~lcL~~~F 268 (571)
T PLN02973 191 VMPASFKVFHDPVRNHETLIADFGESAIGRVAPVDSGFWWIILLRAYTKSTGDS--SLADMPECQKGIRLILSLCLSEGF 268 (571)
T ss_pred CcCceeeecccccCccccccccccccccccccccchhhHHHHHHHHHHHhccch--hhhhcHHHHHHHHHHHHHhccccc
Confidence 333 23323333111 112 55555443 45898888999999888874332 22335566666777665
Q ss_pred ----hCCCCCCCCcc-cCCCCCCCCCcchhhHHHHHHHHHHHHhhhhhcCCCCCCcchhh------------------ch
Q psy12312 139 ----AYCIPDYGIWE-RGDKSNHGLPELNASSIGMAKAALEAMNELDLFGARGGPSSVIH------------------VL 195 (1045)
Q Consensus 139 ----~wr~PD~GIWE-rr~k~N~g~~e~~asSigMa~AALeai~~~~lfG~~g~~~svi~------------------v~ 195 (1045)
..-.||.+-|= |+-. ..-+=...-+.=+.||++.+.+ +-..+.....+. ++
T Consensus 269 d~~ptLlVpDgs~miDrrMg----v~G~pLeiQaLfy~ALR~a~~~--L~~~~~~~~~i~~i~~rl~~L~~hir~~ywld 342 (571)
T PLN02973 269 DTFPTLLCADGCCMIDRRMG----VYGYPIEIQALFFMALRCALLL--LKHDGEGKEMVEQIVKRLHALSYHMRSYFWLD 342 (571)
T ss_pred CCCceEeccCCccccccccc----cCCccHHHHHHHHHHHHHHHHh--cCccchhHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 13479999998 5522 1113334444555667665432 111110000000 00
Q ss_pred HHHHHHH---------HHH--------------HHccCCCCCC-----------Cccccc--ccchhhhcCCCCCCCHHH
Q psy12312 196 ADEAQKC---------QAV--------------LQSMLPRESS-----------SKELDS--GLLSVISFPAFAVDDPLL 239 (1045)
Q Consensus 196 ~D~i~r~---------~~i--------------l~~~Lpres~-----------SkevDA--SLL~ii~~p~fav~Dp~~ 239 (1045)
....++. ..+ +...+|...| +-..|+ =+|++ +++ .-+++.
T Consensus 343 ~~~ln~iyRykteey~~~a~NkfNi~p~sip~wl~dwlp~~gGY~igNv~Pa~~DfRffslGNllAI-Ls~---Lat~~Q 418 (571)
T PLN02973 343 LKQLNDIYRYKTEEYSHTAVNKFNVIPDSLPEWVFDFMPPHGGFFIGNVSPARMDFRWFALGNCIAI-LSS---LATPEQ 418 (571)
T ss_pred HHHhhhHhhcchhhcchhhhhhccCCccccchhhhhhccCCCceeeeecccccCCcchhhhhhHHHH-Hhc---cCCHHH
Confidence 0011000 000 1112232110 122222 12222 223 456656
Q ss_pred HHHHHHHHHH---HhccCCceeecc---C-CCCCC-CCCCCCCCCCChhhhhccCCCCcchhhhHHHHHHHHHHcCCHHH
Q psy12312 240 ISETREAIVS---KLRGKYGCKRFL---R-DGYRT-PKEDPNRLHYDPLELRMFENIESEWPLFFCYLILDFCFQGDEAR 311 (1045)
Q Consensus 240 ~~~T~~~I~~---kL~g~yGvkRY~---~-Dgy~t-~~ed~~r~~Y~~~e~~~feg~E~ewplf~~~l~i~~i~~G~~e~ 311 (1045)
..+.++-|+. +|.+..-+|=+- . +-.+. .--||...+|.- +.-|.||...-++..+++..|+.+.
T Consensus 419 s~aIm~lIe~~w~~Lvg~MPlkicyPaie~~EWri~tG~dpKN~PWSY-------HNGGsWP~Llw~~~aA~iK~gr~~l 491 (571)
T PLN02973 419 STAIMDLIESRWEELVGEMPLKVCYPAIESHEWRIVTGCDPKNTRWSY-------HNGGSWPVLLWLLTAACIKTGRPQI 491 (571)
T ss_pred HHHHHHHHHHHHHHHHhcCCcceeccCcCCccceehhccCCCCCccce-------ecCCCccHHHHHHHHHHHHcCCHHH
Confidence 6777777765 477765442221 1 11111 011222222211 1246999988667777788999999
Q ss_pred HHHHHHHHHhhhhccCCCceecccccccCcccccccccCCCcceecccCCC---CccchhHHHHHHHHHhccCCCCCCCC
Q psy12312 312 VKEYGEALDKVMVQGEEGMKFVPQLYAVPPEHVDEEYKNPGCVERIALGRC---PLLWAQSLYILGRLLQHGFLATGELD 388 (1045)
Q Consensus 312 A~ey~e~L~~~~~~~~~g~~LlPE~Y~V~~~~v~~e~~~p~s~~r~p~gn~---PllWsqslyi~~~ll~~~~l~~~diD 388 (1045)
|++.++.++..+. .++ .||+|.-. +..+.|.- =|.|+=|.|+++..+++ .|+.+.
T Consensus 492 A~ral~~ae~rl~--~d~---WpEyyDGk--------------tGr~iGkqar~yQTWSiAG~LlA~~~L~---~P~~~~ 549 (571)
T PLN02973 492 ARRAIEVAEARLH--KDH---WPEYYDGK--------------VGRYVGKQSRKNQTWSVAGYLVAKMMLE---DPSHVG 549 (571)
T ss_pred HHHHHHHHHHHhh--hcC---ChhhcCCC--------------CCcCcceeccccCchHHHHHHHHHHHhh---Chhhcc
Confidence 9999999999876 345 39998533 44666653 59999999999999887 555554
No 13
>COG3538 Uncharacterized conserved protein [Function unknown]
Probab=95.95 E-value=0.016 Score=65.91 Aligned_cols=119 Identities=21% Similarity=0.319 Sum_probs=84.5
Q ss_pred cccchhhhcCCCCCCCHHHHHHHHHHHHHHhccCCce-eeccCCCCCCCCCCCCCCCCChhhhhccCCCCcchhhhHHHH
Q psy12312 221 SGLLSVISFPAFAVDDPLLISETREAIVSKLRGKYGC-KRFLRDGYRTPKEDPNRLHYDPLELRMFENIESEWPLFFCYL 299 (1045)
Q Consensus 221 ASLL~ii~~p~fav~Dp~~~~~T~~~I~~kL~g~yGv-kRY~~Dgy~t~~ed~~r~~Y~~~e~~~feg~E~ewplf~~~l 299 (1045)
-|||++|..||...+|| .+++|++-|.++= ..|.+ -+|.. |- ..|. .+.-.-|||-.
T Consensus 304 PSLLa~PYLG~c~~dDp-vY~~TRk~iLS~e-NPYy~eG~~a~-Gi----GSpH------------Tp~~yvWpiaL--- 361 (434)
T COG3538 304 PSLLAAPYLGFCEKDDP-VYQNTRKTILSSE-NPYYYEGKYAS-GI----GSPH------------TPDHYVWPIAL--- 361 (434)
T ss_pred hhhhhhhhhccccCCCH-HHHHHHHHHHhcC-CCceecceeec-cC----CCCC------------CCCcccchHHH---
Confidence 38999999999999999 9999999997762 23333 22221 11 1000 11223699865
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhhhccCCCceecccccccCcccccccccCCCcceecccCCCCccchhHHHHHHHHHhc
Q psy12312 300 ILDFCFQGDEARVKEYGEALDKVMVQGEEGMKFVPQLYAVPPEHVDEEYKNPGCVERIALGRCPLLWAQSLYILGRLLQH 379 (1045)
Q Consensus 300 ~i~~i~~G~~e~A~ey~e~L~~~~~~~~~g~~LlPE~Y~V~~~~v~~e~~~p~s~~r~p~gn~PllWsqslyi~~~ll~~ 379 (1045)
++.++-..+..+-++++++|... .-|.+++=|-+.|+ +|.+-+|.= |.|+.+||---.|=+-
T Consensus 362 aiqgLTa~D~~ek~~iL~~L~~t----daGTg~MHE~f~vd---------~P~~fTR~W-----FsWAN~mF~Elild~~ 423 (434)
T COG3538 362 AIQGLTANDDSEKKEILDMLKAT----DAGTGLMHEGFDVD---------DPEQFTREW-----FSWANMMFCELILDLA 423 (434)
T ss_pred HHhhcccCChHHHHHHHHHHHhc----cCCccceecccCCC---------CHHHhhhHH-----HHHHHHHHHHHHHHHh
Confidence 88899888988888988888776 67889999998776 555444443 8999999977665333
No 14
>PLN02703 beta-fructofuranosidase
Probab=95.75 E-value=1.2 Score=53.88 Aligned_cols=78 Identities=15% Similarity=0.287 Sum_probs=61.4
Q ss_pred CcchhhhHHHHHHHHHHcCCHHHHHHHHHHHHhhhhccCCCceecccccccCcccccccccCCCcceecccCCC---Ccc
Q psy12312 289 ESEWPLFFCYLILDFCFQGDEARVKEYGEALDKVMVQGEEGMKFVPQLYAVPPEHVDEEYKNPGCVERIALGRC---PLL 365 (1045)
Q Consensus 289 E~ewplf~~~l~i~~i~~G~~e~A~ey~e~L~~~~~~~~~g~~LlPE~Y~V~~~~v~~e~~~p~s~~r~p~gn~---Pll 365 (1045)
-|.||...-++..+++..|+.+.|++.++.++..+. .++ .||.|.-. +.+|.|.- =|.
T Consensus 501 GGsWP~LlWf~~aA~iK~Gr~~lA~ral~~ae~rl~--~d~---WpEYyDGk--------------tGr~iGkqar~yQT 561 (618)
T PLN02703 501 GGAWPTLLWQLTVASIKMGRPEIAEKAVELAERRIS--LDK---WPEYYDTK--------------RARFIGKQARLYQT 561 (618)
T ss_pred CCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh--hcc---ChhhccCC--------------CCcCcceeccccCc
Confidence 469999886666777779999999999999999875 344 49998533 45666663 599
Q ss_pred chhHHHHHHHHHhccCCCCCCCC
Q psy12312 366 WAQSLYILGRLLQHGFLATGELD 388 (1045)
Q Consensus 366 Wsqslyi~~~ll~~~~l~~~diD 388 (1045)
||=|.|+++..+.+ .|+.+.
T Consensus 562 WSiAGyLlAk~~l~---~P~~~~ 581 (618)
T PLN02703 562 WSIAGYLVAKLLLA---NPAAAK 581 (618)
T ss_pred hHHHHHHHHHHHHh---Chhhcc
Confidence 99999999999887 566554
No 15
>PRK10137 alpha-glucosidase; Provisional
Probab=91.73 E-value=13 Score=47.54 Aligned_cols=68 Identities=13% Similarity=0.135 Sum_probs=49.5
Q ss_pred cchhhhHHHHHHHHHH-cCCHHHHHHHHHHHHhhhh-ccCCCceecccccccCcccccccccCCCcceecccCCCCccch
Q psy12312 290 SEWPLFFCYLILDFCF-QGDEARVKEYGEALDKVMV-QGEEGMKFVPQLYAVPPEHVDEEYKNPGCVERIALGRCPLLWA 367 (1045)
Q Consensus 290 ~ewplf~~~l~i~~i~-~G~~e~A~ey~e~L~~~~~-~~~~g~~LlPE~Y~V~~~~v~~e~~~p~s~~r~p~gn~PllWs 367 (1045)
..|+--. ||++.++. .|..++|+++.+++..... -..+| -|-|.|.+ . +..+.|..+|-|+
T Consensus 710 pVWpp~N-~Li~~GL~rYG~~e~A~~La~~ll~~a~~l~~tG--~~~E~YDp------------~--TGeg~Ga~~FSWT 772 (786)
T PRK10137 710 RVWVDQF-YFGLKGMERYGYRDDALKLADTFFRHAKGLTADG--PIQENYNP------------L--TGAQQGAPNFSWS 772 (786)
T ss_pred CcCHhHH-HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcC--ceEEeECC------------C--CCcccCCCCCChH
Confidence 4798766 99999888 9999999999999876310 01234 58898853 3 3466667788999
Q ss_pred hHHHHHH
Q psy12312 368 QSLYILG 374 (1045)
Q Consensus 368 qslyi~~ 374 (1045)
-|.+++.
T Consensus 773 AAvlLml 779 (786)
T PRK10137 773 AAHLYML 779 (786)
T ss_pred HHHHHHH
Confidence 9988763
No 16
>PF12899 Glyco_hydro_100: Alkaline and neutral invertase; InterPro: IPR024746 This is a family of endo-alpha-N-acetylgalactosaminidases. This is a unique enzyme that hydrolyses core 1-type O-glycan from glycoproteins. The proteins are produced in the gut-flora bacteria from Actinobacteria and Firmicutes [].; GO: 0033926 glycopeptide alpha-N-acetylgalactosaminidase activity
Probab=84.97 E-value=2.3 Score=50.19 Aligned_cols=73 Identities=18% Similarity=0.367 Sum_probs=53.7
Q ss_pred CcchhhhHHHHHHHHHHcCCHHHHHHHHHHHHhhhhccCCCceecccccccCcccccccccCCCcceecccCC---CCcc
Q psy12312 289 ESEWPLFFCYLILDFCFQGDEARVKEYGEALDKVMVQGEEGMKFVPQLYAVPPEHVDEEYKNPGCVERIALGR---CPLL 365 (1045)
Q Consensus 289 E~ewplf~~~l~i~~i~~G~~e~A~ey~e~L~~~~~~~~~g~~LlPE~Y~V~~~~v~~e~~~p~s~~r~p~gn---~Pll 365 (1045)
-|.||.-+-++..+.+..|+.+-|++..+..+..+. .++ +||.|.- .+..|.|. .=|.
T Consensus 360 GG~WP~LlW~~~aA~ik~gr~~lA~~al~~a~~rL~--~de---wpEyydG--------------ktGrp~Gkqar~~QT 420 (436)
T PF12899_consen 360 GGSWPVLLWFLTAALIKMGRPELAERALEAAENRLS--KDE---WPEYYDG--------------KTGRPMGKQARKYQT 420 (436)
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc--ccC---CcccccC--------------CCCCcccccccccCc
Confidence 469998863444445559999999998888777754 344 8998742 25577775 3499
Q ss_pred chhHHHHHHHHHhcc
Q psy12312 366 WAQSLYILGRLLQHG 380 (1045)
Q Consensus 366 Wsqslyi~~~ll~~~ 380 (1045)
||=|+|+++..+.+.
T Consensus 421 WSaAgyLlA~~~l~~ 435 (436)
T PF12899_consen 421 WSAAGYLLAKHLLEN 435 (436)
T ss_pred hHHHHHHHHHHHhhC
Confidence 999999999987763
No 17
>TIGR01561 gde_arch glycogen debranching enzyme, archaeal type, putative. The seed for this model is composed of two uncharacterized archaeal proteins from Methanosarcina acetivorans and Sulfolobus solfataricus. Trusted cutoff is set so that essentially only archaeal members hit the model. The notable exceptions to archaeal membership are the Gram positive Clostridium perfringens which scores much better than some other archaea and the Cyanobacterium Nostoc sp. which scores just above the trusted cutoff. Noise cutoff is set to exclude the characterized eukaryotic glycogen debranching enzyme in S. cerevisiae. These cutoffs leave the prokaryotes Porphyromonas gingivalis and Deinococcus radiodurans below trusted but above noise. Multiple alignments including these last two species exhibit sequence divergence which may suggest a subtly different function for these prokaryotic proteins.
Probab=76.84 E-value=80 Score=39.49 Aligned_cols=204 Identities=15% Similarity=0.148 Sum_probs=101.3
Q ss_pred chhHHHHHHHHH---hcHHHHHHHHHHHHHHHhcchhhHHhhhccCCCCcccccccccCCCccccCCcccchhhhhHHHH
Q psy12312 28 LRTNVDTRLGFF---IGRYSCVKLMRGLLMAMMQQKHKVEQFKITQNPLDALHAKYHSATGETVVGDTEWGHLQIDAISL 104 (1045)
Q Consensus 28 VRDa~yt~~Al~---~l~~~A~k~mr~LL~~~m~q~~kve~fk~~~~~~~~lh~kY~~~tg~pVvGn~aw~hlQlDa~gl 104 (1045)
=||.-.++-++. +-.++|++.++....++ +++.-| ..+...++.| .|+ -.||+-.
T Consensus 295 GRDt~Isl~Gl~l~tgr~~~A~~iL~~fa~~~----------~~GliP-----N~~~~~g~~p-----~Yn--tvDAtLW 352 (575)
T TIGR01561 295 GRDSFISLEGLLLIDKQFDEAKEAILKFANLC----------KRGLIP-----NNFIAFGGDP-----IYN--GVDASLW 352 (575)
T ss_pred hhHHHHHHHHHHhcCCcHHHHHHHHHHHHHHh----------HCCCCC-----CccCCCCCCc-----cCC--CchHHHH
Confidence 899999987775 36688888666555444 122211 1222333333 354 7899999
Q ss_pred HHHHHHHHHHcCCceeeCcchHHHHHHHHHHHHHh-----CCCCCCCC--------cccCCCCC--CCCCc--chhhHHH
Q psy12312 105 YLLILAQMTASGLQIVFCLDEVAFIQNLVFYIESA-----YCIPDYGI--------WERGDKSN--HGLPE--LNASSIG 167 (1045)
Q Consensus 105 ~LlaL~qm~~sGl~ii~t~dev~fIqnLV~yie~~-----wr~PD~GI--------WErr~k~N--~g~~e--~~asSig 167 (1045)
|+.++.++.+......+-.+-+..++.++++..+. +-.+| |+ |=.. +.+ -..|+ --+-=-+
T Consensus 353 fi~al~~Y~~~tgD~~~l~~l~p~l~~ii~~y~~G~~~~i~~d~d-GLi~~g~~lTWMDa-~~g~~~~tPR~G~~VEInA 430 (575)
T TIGR01561 353 AIHAIDKTFAYSQDFLFIRDVVDKVLDIIDNYCAGNDFAIGMDND-LIFHKGAPLTWMDA-KVDERAVTPRAGAACEINA 430 (575)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCCCcEEEECCC-ccEeCCCCCCCCCC-CCCCccCCCCCCccHHHHH
Confidence 99999998765322111111122333333322221 11233 22 3321 000 01233 2333346
Q ss_pred HHHHHHHHHhhh-hhcCCCCCCcchhhchHHHHHHHHHHHHccCCCCCC----------------CcccccccchhhhcC
Q psy12312 168 MAKAALEAMNEL-DLFGARGGPSSVIHVLADEAQKCQAVLQSMLPRESS----------------SKELDSGLLSVISFP 230 (1045)
Q Consensus 168 Ma~AALeai~~~-~lfG~~g~~~svi~v~~D~i~r~~~il~~~Lpres~----------------SkevDASLL~ii~~p 230 (1045)
..+.||..+..+ ..+|... ..+...++.+++ ...+.++..+.+ +..+-..-+..++.|
T Consensus 431 LwYnAL~~~a~la~~~g~~a---~~y~~~A~~lk~--~F~~~FW~~~~g~l~D~v~~d~~~~~~~d~s~RPNql~A~sL~ 505 (575)
T TIGR01561 431 LWYNALKTAEFLGNELGEDA---ESLEEKAAGVAK--NFAEKFINPDGNCLFDLIHQDEAGNQVKDKAIRPNQIFAISLP 505 (575)
T ss_pred HHHHHHHHHHHHHHHhCccH---HHHHHHHHHHHH--HHHHhcCCCCCCeeEEEEecCCCCCcccccccCCCceeHhhCC
Confidence 778899887666 6677431 123333333332 222223221110 111222233334444
Q ss_pred CCCCCCHH-HHHHHHHHHHHHhccCCceeecc
Q psy12312 231 AFAVDDPL-LISETREAIVSKLRGKYGCKRFL 261 (1045)
Q Consensus 231 ~fav~Dp~-~~~~T~~~I~~kL~g~yGvkRY~ 261 (1045)
+ ++=|++ +..+.++.+.++|.+.+|++==.
T Consensus 506 ~-~ll~~~~~~~~vl~~v~~~Lltp~GlRTLs 536 (575)
T TIGR01561 506 F-PIIDDESIAKAILDLIEKDLLRPFGLKSLS 536 (575)
T ss_pred C-CCCCHHHHHHHHHHHHHhhccCCcccccCC
Confidence 3 233444 77888889999999999986443
No 18
>PRK13271 treA trehalase; Provisional
Probab=56.71 E-value=2.7e+02 Score=34.96 Aligned_cols=97 Identities=11% Similarity=0.041 Sum_probs=58.9
Q ss_pred cchhhhHHHHHHHHHH-cCCHHHHHHHHHHHHhhhhccCCCceecccccccCcccccccccCCCcceecccCCCCccchh
Q psy12312 290 SEWPLFFCYLILDFCF-QGDEARVKEYGEALDKVMVQGEEGMKFVPQLYAVPPEHVDEEYKNPGCVERIALGRCPLLWAQ 368 (1045)
Q Consensus 290 ~ewplf~~~l~i~~i~-~G~~e~A~ey~e~L~~~~~~~~~g~~LlPE~Y~V~~~~v~~e~~~p~s~~r~p~gn~PllWsq 368 (1045)
..|+--- |+++.++. .|..+.|+++..+-.......-+..+-|-|.|+|.. ...++.....++ ..=|-|+.
T Consensus 455 ngWaPlq-~iiieGL~~yG~~~lA~~la~rwl~~~~~~~~~~g~m~EKYd~~~------~G~~gGGGeY~~-q~GFGWTN 526 (569)
T PRK13271 455 NGWAPLQ-WVATEGLQNYGQKEVAMDVTWRFLTNVQHTYDREKKLVEKYDVSS------TGTGGGGGEYPL-QDGFGWTN 526 (569)
T ss_pred ccCHhHH-HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhcccCceEEeeCCCC------CCCCCCCCCCCC-CCCcCcHH
Confidence 4688766 99999998 788899998888765553221122337999997631 112221111111 11399999
Q ss_pred HHHHHHHHHhccCCCCCCCCCCcccc
Q psy12312 369 SLYILGRLLQHGFLATGELDPLNRRL 394 (1045)
Q Consensus 369 slyi~~~ll~~~~l~~~diDPl~R~~ 394 (1045)
+.++.....+..-..|.+-.|..|--
T Consensus 527 gV~L~lL~~~~~~~~~~~~~~~~~~~ 552 (569)
T PRK13271 527 GVTLKMLDLICPKEKPCDNVPATRPA 552 (569)
T ss_pred HHHHHHHHhcCccccCccccccCCCC
Confidence 99887665554444455555555543
No 19
>PF04685 DUF608: Protein of unknown function, DUF608; InterPro: IPR006775 This domain is found in non-lysosomal glucosylceramidases that catalyze the conversion of glucosylceramide to free glucose and ceramide []. It is involved in sphingomyelin generation and prevention of glycolipid accumulation and may also catalyze the hydrolysis of bile acid 3-O-glucosides, however, the relevance of such activity is unclear in vivo []. ; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0016021 integral to membrane; PDB: 1V7V_A 1V7W_A 1V7X_A.
Probab=55.90 E-value=17 Score=42.74 Aligned_cols=209 Identities=13% Similarity=0.055 Sum_probs=70.8
Q ss_pred hhhHHHHHHHHHHHHHHcCCceeeCcchHHHHHHHHHHHHHhCCCCCCCCcccCC---CCCCCC--CcchhhHHHHHHHH
Q psy12312 98 QIDAISLYLLILAQMTASGLQIVFCLDEVAFIQNLVFYIESAYCIPDYGIWERGD---KSNHGL--PELNASSIGMAKAA 172 (1045)
Q Consensus 98 QlDa~gl~LlaL~qm~~sGl~ii~t~dev~fIqnLV~yie~~wr~PD~GIWErr~---k~N~g~--~e~~asSigMa~AA 172 (1045)
=.|....|++.++...+......|-.+-|.-++..++|..+ |....-|+-|... .|..+. .-.++++-++--||
T Consensus 97 ~~D~~~~fVL~vyr~~~~TGD~~fL~~~wp~v~~a~~~~~~-~D~d~dGl~e~~g~~D~TyD~~~~~G~say~~~L~laA 175 (365)
T PF04685_consen 97 WKDLNPKFVLQVYRDYKWTGDRDFLKEMWPAVKKAMDYLLS-WDRDGDGLPENPGHPDQTYDDWSMYGPSAYCGGLWLAA 175 (365)
T ss_dssp --------------------------EHHHHHHHHHHHHHH-SB--TTS-BEEET---SSSTT-EEEEEEHHHHHHHHHH
T ss_pred cccccccccccccccccccccchhhhhHHHHHHHHHHHHHh-hCCCCCCCCCCCCCCccccccCCeeCCCHHHHHHHHHH
Confidence 36788889999998776543455556779999999999987 7776777777442 232222 33678888888999
Q ss_pred HHHHhhh-hhcCCCCCCcchhhchHHHHHHHHHHHHc-cCCCC----------CCCcccccccc------hhhhcCCCCC
Q psy12312 173 LEAMNEL-DLFGARGGPSSVIHVLADEAQKCQAVLQS-MLPRE----------SSSKELDSGLL------SVISFPAFAV 234 (1045)
Q Consensus 173 Leai~~~-~lfG~~g~~~svi~v~~D~i~r~~~il~~-~Lpre----------s~SkevDASLL------~ii~~p~fav 234 (1045)
|+|+..+ +..|.+... ..-....++.++.++. +..-+ ..++.+=|.-| .+.+.| .+
T Consensus 176 L~A~~emA~~lgd~~~a----~~y~~~~~~~~~~~~~~LWnGeyy~~~~d~~~~~~~~~~aDQl~Gqw~a~~~gl~--~v 249 (365)
T PF04685_consen 176 LRAAAEMAKILGDPELA----AKYRELAEKAKKAFNKKLWNGEYYRQWYDSKYQNGDGCMADQLCGQWWARLLGLG--DV 249 (365)
T ss_dssp HHHHHHHHHHHT-HHHH----HHHHHHHHHHHHHHHHHSEETTEE--EE---TTS-EES-TT-SS--EEHHHHHHT--T-
T ss_pred HHHHHHHHHHCCCHHHH----HHHHHHHHHHHHHHHHHhhCHhheeeeeccCCCCCCeEEeChhhHHHHHHHcCCc--CC
Confidence 9986666 677853211 1122334444555555 44422 12233322222 112233 35
Q ss_pred CCHHHHHHHHHHHHHHhccCCceeeccCCCCCCCCCCCCCCCCChhhh-hccCCCCcchhhhHHHHHHHHHHcCCHHHHH
Q psy12312 235 DDPLLISETREAIVSKLRGKYGCKRFLRDGYRTPKEDPNRLHYDPLEL-RMFENIESEWPLFFCYLILDFCFQGDEARVK 313 (1045)
Q Consensus 235 ~Dp~~~~~T~~~I~~kL~g~yGvkRY~~Dgy~t~~ed~~r~~Y~~~e~-~~feg~E~ewplf~~~l~i~~i~~G~~e~A~ 313 (1045)
-|++++++++++|.+-.. +.|..+.++.+.- -+..++. ..+.-.+.-|+=..+-++-..+..|..++|.
T Consensus 250 ~~~e~v~sAL~sI~~~N~-----~~~~~~~~G~~n~-----~~p~g~~~~~~~q~~evW~G~~y~~Aa~mi~~G~~~e~~ 319 (365)
T PF04685_consen 250 LDEEKVKSALRSIYEYNV-----KYFLGGEMGAVNG-----VWPDGKPDTSSPQSNEVWTGVEYAVAAHMIQEGMVEEGL 319 (365)
T ss_dssp S-HHHHHHHHHHHHHHHE-----E-S-BTTTBGGGG-----S-T------------------------------------
T ss_pred CCHHHHHHHHHHHHHhcC-----eEccCCCCcEEEe-----eeccccccccccccccccccccccccccccccccccccc
Confidence 577799999999977654 3444433322110 0001111 1112233489988877777788899999998
Q ss_pred HHHHHHHhhh
Q psy12312 314 EYGEALDKVM 323 (1045)
Q Consensus 314 ey~e~L~~~~ 323 (1045)
+..+.+-...
T Consensus 320 ~~~~~~~~~~ 329 (365)
T PF04685_consen 320 EIAKGIYDRY 329 (365)
T ss_dssp ----------
T ss_pred cccccccccc
Confidence 8877776653
No 20
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. Bacterial SQCY catalyzes the convertion of squalene to hopene or diplopterol. Eukaryotic OSQCY transforms the 2,3-epoxide of squalene to compounds such as, lanosterol (a metabolic precursor of cholesterol and steroid hormones) in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain. This group also contains SQCY-like archael sequences and some bacterial SQCY's which lack this minor domain.
Probab=53.77 E-value=3.8e+02 Score=30.41 Aligned_cols=123 Identities=14% Similarity=0.051 Sum_probs=71.0
Q ss_pred hhhhccccCCCcccccC-CCchhHHHHHHHHHh------cHHHHHHHHHHHHHHHhcchhhHHhhhccCCCCccccccc-
Q psy12312 9 ALVSVLTDSLINLVPAQ-THLRTNVDTRLGFFI------GRYSCVKLMRGLLMAMMQQKHKVEQFKITQNPLDALHAKY- 80 (1045)
Q Consensus 9 ~~il~~Q~p~tGl~pAs-~~VRDa~yt~~Al~~------l~~~A~k~mr~LL~~~m~q~~kve~fk~~~~~~~~lh~kY- 80 (1045)
+.+.+.|+|.+ =.+.. +++.+.+++++|+.. +.+.+.|.++||+..-..+. +.+ +...|
T Consensus 6 ~~L~~~Q~~dG-~W~~~~~~~~~Ta~~~~al~~~g~~~~~~~~~~ka~~~l~~~q~~~~-----------~~~-~~~~~~ 72 (348)
T cd02889 6 DFLLSLQAPDG-HWPGEYSQVWDTALALQALLEAGLAPEFDPALKKALEWLLKSQIRDN-----------PDD-WKVKYR 72 (348)
T ss_pred HHHHHhccCCC-CccccCCchHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHhcCCCCC-----------CCc-hhhcCC
Confidence 46789999954 44432 569999999999973 67788888888887421110 000 12222
Q ss_pred -ccCCCccccCCcccchhhhhHHHHHHHHHHHHHHcCCceeeCcchHHHHHHHHHHHHHhCCCCCCCCcc
Q psy12312 81 -HSATGETVVGDTEWGHLQIDAISLYLLILAQMTASGLQIVFCLDEVAFIQNLVFYIESAYCIPDYGIWE 149 (1045)
Q Consensus 81 -~~~tg~pVvGn~aw~hlQlDa~gl~LlaL~qm~~sGl~ii~t~dev~fIqnLV~yie~~wr~PD~GIWE 149 (1045)
..++|-+ .+...-++-..|.|+..+.+|.++...-.. -....-+.++..++||.+. +.|| |-|-
T Consensus 73 ~~~~Ggw~-y~~~~~~~~~~~~Ta~~l~al~~~~~~~~~--~~~~~~~~i~~a~~~L~~~-Q~~d-G~f~ 137 (348)
T cd02889 73 HLRKGGWA-FSTANQGYPDSDDTAEALKALLRLQKKPPD--GKKVSRERLYDAVDWLLSM-QNSN-GGFA 137 (348)
T ss_pred CCCCCcCc-ccCcCCCCCCCCChHHHHHHHHHhhccCcc--cchhhHHHHHHHHHHHHHh-ccCC-CCEe
Confidence 1222211 000000123468999999999875432100 0123457888899999876 4455 4453
No 21
>PRK13270 treF trehalase; Provisional
Probab=40.41 E-value=3.5e+02 Score=33.86 Aligned_cols=80 Identities=15% Similarity=0.091 Sum_probs=49.7
Q ss_pred cchhhhHHHHHHHHHH-cCCHHHHHHHHHHHHhhhhcc--CCCceecccccccCcccccccccCCCcceecccCCCCccc
Q psy12312 290 SEWPLFFCYLILDFCF-QGDEARVKEYGEALDKVMVQG--EEGMKFVPQLYAVPPEHVDEEYKNPGCVERIALGRCPLLW 366 (1045)
Q Consensus 290 ~ewplf~~~l~i~~i~-~G~~e~A~ey~e~L~~~~~~~--~~g~~LlPE~Y~V~~~~v~~e~~~p~s~~r~p~gn~PllW 366 (1045)
+.|+--- |+++.++. .|..+.|+++..+-....... .+| -+.|.|.|... . ..+|.....++- .=|-|
T Consensus 464 N~WaPlq-wmiieGL~ryG~~~lA~~LA~rwl~~~~~~~~~~g--~m~EKYdv~~~----~-g~~GgGGEY~~q-~GFGW 534 (549)
T PRK13270 464 NGWAPLQ-WMAIQGFKMYGDDLLGDEIARSWLKTVNQFYQEHH--KLIEKYHIAGG----V-PREGGGGEYPLQ-DGFGW 534 (549)
T ss_pred CCCccHH-HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhcC--eeEEEecCCCC----C-CCCCCCCCcCCC-CCcCc
Confidence 5798777 99999998 899999999888866654321 234 79999976411 0 011111111111 22999
Q ss_pred hhHHHHHHHHHh
Q psy12312 367 AQSLYILGRLLQ 378 (1045)
Q Consensus 367 sqslyi~~~ll~ 378 (1045)
+.+.++-..-.+
T Consensus 535 TNGV~l~~l~~y 546 (549)
T PRK13270 535 TNGVVRRLIGLY 546 (549)
T ss_pred HHHHHHHHHHHh
Confidence 999987655443
No 22
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=38.09 E-value=1.6e+02 Score=40.59 Aligned_cols=114 Identities=16% Similarity=0.072 Sum_probs=68.2
Q ss_pred CCHHHHHHHHHHHHHHhccCCceeeccCC--CCCCCCCCCCCCCCChhh-hhc---------cCCCCcchhhhHHHHHHH
Q psy12312 235 DDPLLISETREAIVSKLRGKYGCKRFLRD--GYRTPKEDPNRLHYDPLE-LRM---------FENIESEWPLFFCYLILD 302 (1045)
Q Consensus 235 ~Dp~~~~~T~~~I~~kL~g~yGvkRY~~D--gy~t~~ed~~r~~Y~~~e-~~~---------feg~E~ewplf~~~l~i~ 302 (1045)
=|++.....++.+ ++|.+.+|++=-..+ .| +-+|+..+ -+. ..|.|=.||+-++ +.+
T Consensus 1325 ~~~~~a~~~L~~v-~~LltP~GlRTLdP~D~~Y--------~g~Y~g~~dsrD~~t~kg~aYHqG~eW~WllG~f--l~A 1393 (1464)
T TIGR01531 1325 FVPEKAWKALTIA-EVLLGPLGMKTLDPSDWNY--------RGYYNNGEDSDDFATAKGRNYHQGPEWVWPIGYF--LRA 1393 (1464)
T ss_pred CCHHHHHHHHHHH-HHhccCCccccCCCCCcCC--------CCccCCchhhccccccccccccCCCcCccchhHH--HHH
Confidence 3666888888888 999999998765542 33 22344332 111 2577878877664 333
Q ss_pred HHH-cCC---HHH------HHHHHHHHHhhhhccCCCceecccccccCcccccccccCCCcceecccCCCCccchhHHHH
Q psy12312 303 FCF-QGD---EAR------VKEYGEALDKVMVQGEEGMKFVPQLYAVPPEHVDEEYKNPGCVERIALGRCPLLWAQSLYI 372 (1045)
Q Consensus 303 ~i~-~G~---~e~------A~ey~e~L~~~~~~~~~g~~LlPE~Y~V~~~~v~~e~~~p~s~~r~p~gn~PllWsqslyi 372 (1045)
++. .+. .+. +.+.+..+...+. ..+.+-+||.|+=+ .|+ .|.|-.=|+||.|..+
T Consensus 1394 ~lk~~~~~~~~~~~~~~~~~~~~L~~~~~~l~--~~~~g~l~El~dgd---------gp~----~~~gc~aQAWSvaelL 1458 (1464)
T TIGR01531 1394 RLHFHFKTGPRCQAAAIKPVSYLLQQLYYHLK--ESPWRGLPELTNKD---------GEY----CNDSCPTQAWSVACLL 1458 (1464)
T ss_pred HHHhccccccchhhHHHHHHHHHHHHHHHHHH--hcCCCCcccccCCC---------CCC----CCCCCHHHHHHHHHHH
Confidence 332 222 222 2344444555554 45667899997532 222 4455556999999988
Q ss_pred HH
Q psy12312 373 LG 374 (1045)
Q Consensus 373 ~~ 374 (1045)
.+
T Consensus 1459 r~ 1460 (1464)
T TIGR01531 1459 EL 1460 (1464)
T ss_pred HH
Confidence 76
No 23
>cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement. Class II terpene cyclases include squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY), these integral membrane proteins catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. The protein prenyltransferases include protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II) which catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Alpha (2)-M is a major carrier protein in serum and involved in the immobilization and entrapment of proteases. PZP is a pregnancy associated protein.
Probab=36.79 E-value=3.4e+02 Score=28.82 Aligned_cols=136 Identities=14% Similarity=0.025 Sum_probs=0.0
Q ss_pred hhhhhhhhccccCCCccccc----CCCchhHHHHHHHHHhcHHH-------HHHHHHHHHHHHhcchhhHHhhhccCCCC
Q psy12312 5 RDKEALVSVLTDSLINLVPA----QTHLRTNVDTRLGFFIGRYS-------CVKLMRGLLMAMMQQKHKVEQFKITQNPL 73 (1045)
Q Consensus 5 ~~~~~~il~~Q~p~tGl~pA----s~~VRDa~yt~~Al~~l~~~-------A~k~mr~LL~~~m~q~~kve~fk~~~~~~ 73 (1045)
+...+.|.++|++.+|--.. ..++.+.+|++.|+..+... ..+..+||+.. |.+.
T Consensus 55 ~~~~~~l~~~q~~dG~~~~~~~~~~~~~~~T~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~--------------q~~d 120 (300)
T cd00688 55 EKGIQRLLSYQLSDGGFSGWGGNDYPSLWLTAYALKALLLAGDYIAVDRIDLARALNWLLSL--------------QNED 120 (300)
T ss_pred HHHHHHHHhccCCCCCccCCCCCCCcchHhHHHHHHHHHHcCCccccCHHHHHHHHHHHHHc--------------cCCC
Q ss_pred cccccccccCCCccccCCcccchhhhhHHHHHHHHHHHHHHcCCceeeCcchHHHHHHHHHHHHHhCCCCCCCCcccCCC
Q psy12312 74 DALHAKYHSATGETVVGDTEWGHLQIDAISLYLLILAQMTASGLQIVFCLDEVAFIQNLVFYIESAYCIPDYGIWERGDK 153 (1045)
Q Consensus 74 ~~lh~kY~~~tg~pVvGn~aw~hlQlDa~gl~LlaL~qm~~sGl~ii~t~dev~fIqnLV~yie~~wr~PD~GIWErr~k 153 (1045)
+.+...+....+ ..+..-..+.++..|.+|..+..... ...++..+.|+.+. +.+|.|. .....
T Consensus 121 G~~~~~~~~~~~------~~~~~~~~~~t~~al~aL~~~~~~~~--------~~~~~~~~~~l~~~-q~~~g~~-~~~~~ 184 (300)
T cd00688 121 GGFREDGPGNHR------IGGDESDVRLTAYALIALALLGKLDP--------DPLIEKALDYLLSC-QNYDGGF-GPGGE 184 (300)
T ss_pred CCeeeecCCCCc------ccCCCCcccHHHHHHHHHHHcCCCCC--------cHHHHHHHHHHHHH-hcCCCCc-CCCcc
Q ss_pred CCCCCCcchhhHHHHHHHHHHHHh
Q psy12312 154 SNHGLPELNASSIGMAKAALEAMN 177 (1045)
Q Consensus 154 ~N~g~~e~~asSigMa~AALeai~ 177 (1045)
.++++..++-.||..+.
T Consensus 185 -------~~~~~t~~~~~aL~~~~ 201 (300)
T cd00688 185 -------SHGYGTACAAAALALLG 201 (300)
T ss_pred -------ccHHHHHHHHHHHHHcC
No 24
>PF01204 Trehalase: Trehalase; InterPro: IPR001661 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 37 GH37 from CAZY comprises enzymes with only one known activity; trehalase (3.2.1.28 from EC). Trehalase is the enzyme responsible for the degradation of the disaccharide alpha,alpha-trehalose yielding two glucose subunits []. It is an enzyme found in a wide variety of organisms and whose sequence has been highly conserved throughout evolution.; GO: 0004555 alpha,alpha-trehalase activity, 0005991 trehalose metabolic process; PDB: 2JJB_B 2WYN_B 2JG0_A 2JF4_A 3C67_A 3D3I_B 3C69_A 3C68_A 2Z07_B.
Probab=35.30 E-value=4.6e+02 Score=32.42 Aligned_cols=124 Identities=12% Similarity=0.086 Sum_probs=65.8
Q ss_pred CCCHHHHHHHHHHHHHHhccCCceeeccCCCCCCCCCCCCCCCCChhhhhccCCCCcchhhhHHHHHHHHHH-cCCHHHH
Q psy12312 234 VDDPLLISETREAIVSKLRGKYGCKRFLRDGYRTPKEDPNRLHYDPLELRMFENIESEWPLFFCYLILDFCF-QGDEARV 312 (1045)
Q Consensus 234 v~Dp~~~~~T~~~I~~kL~g~yGvkRY~~Dgy~t~~ed~~r~~Y~~~e~~~feg~E~ewplf~~~l~i~~i~-~G~~e~A 312 (1045)
+-+++...+.++++...+.. .|...| ..|.-+..-+ +++.=.+ ...|+-.. |+++.++. .|..+.|
T Consensus 385 ~a~~~qa~~~~~~~l~~~~~-~~~l~~-~~g~~ts~~~-------~~~qWD~---Pn~WaPlq-~~~i~GL~~yG~~~lA 451 (512)
T PF01204_consen 385 IASPEQAERLVARALDYLER-SGLLTF-PGGIPTSLYD-------TGQQWDG---PNVWAPLQ-WMAIEGLRRYGYRELA 451 (512)
T ss_dssp -S-HHHHHHHHHHHHHHCTT-CCSSC--CSECTTCTTT-------TTSTTST---TEEEHHHH-HHHHHHHHHTT-HHHH
T ss_pred hcCHhhhhhHHHHHHHHHHh-cCCccc-CCCCCCcccc-------ccccCCC---CCccHhHH-HHHHHHHHhCCcHHHH
Confidence 34444556677777777763 344444 2233222222 2221111 23598776 99999888 8999999
Q ss_pred HHHHHHHHhhhhccCCCceecccccccCcccccccccCCC-cceecccCCCCccchhHHHHHHHHH
Q psy12312 313 KEYGEALDKVMVQGEEGMKFVPQLYAVPPEHVDEEYKNPG-CVERIALGRCPLLWAQSLYILGRLL 377 (1045)
Q Consensus 313 ~ey~e~L~~~~~~~~~g~~LlPE~Y~V~~~~v~~e~~~p~-s~~r~p~gn~PllWsqslyi~~~ll 377 (1045)
+++-++........-...+-+-|-|.|... . .++ .....++ ..=|.|+.+.++.....
T Consensus 452 ~~la~rwl~~~~~~~~~~g~m~EKYd~~~~---~---~~gg~gGeY~~-q~GFGWTNgv~l~~l~~ 510 (512)
T PF01204_consen 452 RRLAQRWLRLNYKVFKRTGKMFEKYDVEDG---G---EPGGGGGEYPV-QDGFGWTNGVYLDLLDK 510 (512)
T ss_dssp HHHHHHHHHHHHHCCCCCSSEBSEEETTTT---S---CEC-S-SSS----BS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcCchhccccceec---c---ccCCCCCcccC-CCCCccHHHHHHHHHHh
Confidence 999888666544322222479999987631 0 111 1101111 12389999998876543
No 25
>COG3459 Cellobiose phosphorylase [Carbohydrate transport and metabolism]
Probab=34.02 E-value=92 Score=40.86 Aligned_cols=102 Identities=15% Similarity=0.104 Sum_probs=69.0
Q ss_pred CHHHHHHHHHHHHHHhccCCceeeccCCCCCCCCCCCCCCCCChhhhhccCCCCcchhhhHHHHHHHHHHcCCHHHHHHH
Q psy12312 236 DPLLISETREAIVSKLRGKYGCKRFLRDGYRTPKEDPNRLHYDPLELRMFENIESEWPLFFCYLILDFCFQGDEARVKEY 315 (1045)
Q Consensus 236 Dp~~~~~T~~~I~~kL~g~yGvkRY~~Dgy~t~~ed~~r~~Y~~~e~~~feg~E~ewplf~~~l~i~~i~~G~~e~A~ey 315 (1045)
|+++..+-|+.|.+.|...+|++=|.+--..+..+-.-...|.|+ -...-+++.---+|.++..+.+|+-++|-+.
T Consensus 843 d~~ra~kaMd~v~k~L~~pdgvrL~tppf~~~~~~~gyiK~y~pg----vREnGgQYtHa~~w~i~Alak~G~a~eAw~~ 918 (1056)
T COG3459 843 DKERAEKAMDSVMKYLVDPDGVRLFTPPFSYTKGDPGYIKRYPPG----VRENGGQYTHAATWVILALAKMGRADEAWEL 918 (1056)
T ss_pred ChHHHHHHHHHHHHhccCccccEecCCcccccCCCCCeeecCCcc----cccccceeecccHHHHHHHHhhccHHHHHHH
Confidence 556999999999999999999766654222111111113345553 2344567777778999999999999999999
Q ss_pred HHHHHhhhhccCCCceecccccccCcccc
Q psy12312 316 GEALDKVMVQGEEGMKFVPQLYAVPPEHV 344 (1045)
Q Consensus 316 ~e~L~~~~~~~~~g~~LlPE~Y~V~~~~v 344 (1045)
+.++.++-+.+ .---+|.|-|.|..+
T Consensus 919 f~~inPvn~~~---~~~~ae~~rvepYv~ 944 (1056)
T COG3459 919 FDKINPVNHAE---SVPNAETYRVEPYVS 944 (1056)
T ss_pred HHhcCCcchhc---cccchhheeecceee
Confidence 99998884432 112566666655543
No 26
>KOG2047|consensus
Probab=34.01 E-value=35 Score=42.71 Aligned_cols=96 Identities=19% Similarity=0.403 Sum_probs=58.0
Q ss_pred cccchhhhHHhhhccCcccchhhh----HHHhhhcCcEEEEcCCCCCc---eeecCCCCHHHHHHHHHHHc------CCc
Q psy12312 607 QKLWGLVRHTAGMLGKRVEDLAKA----VTDLLVRQKQVTVGMPPANE---HTITAPLPENELRHLIHVTY------GDD 673 (1045)
Q Consensus 607 ~~~W~lVR~~AglL~K~v~~La~a----iTdlLVrqKqvtVG~~~~~E---~~Is~Pl~~~ei~~~I~~~~------~~d 673 (1045)
...|+++||+-+++.+......++ +=.|...--+-+.|++-++| .-|.. ||.+.-.++--++. |+=
T Consensus 596 EEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~-Lp~~~~r~mclrFAdlEtklGEi 674 (835)
T KOG2047|consen 596 EEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES-LPDSKAREMCLRFADLETKLGEI 674 (835)
T ss_pred HHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh-CChHHHHHHHHHHHHHhhhhhhH
Confidence 347899999999888755544433 34555555566778887753 45555 77766665543332 322
Q ss_pred hhhHHHHHHHHHHHHHHH--hcCccc----------------cchhhHHHHH
Q psy12312 674 ESSAMLTQELLVYLAMFI--RTEPQL----------------FLEMLRLRVG 707 (1045)
Q Consensus 674 ~~~~vL~QElliyLg~lI--rt~P~L----------------F~gmL~lRvG 707 (1045)
.|. -+|..|++-+- |+++++ .++|||||=.
T Consensus 675 dRA----RaIya~~sq~~dPr~~~~fW~twk~FEvrHGnedT~keMLRikRs 722 (835)
T KOG2047|consen 675 DRA----RAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNEDTYKEMLRIKRS 722 (835)
T ss_pred HHH----HHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 222 35556666554 555544 5689998854
No 27
>PF09432 THP2: Tho complex subunit THP2; InterPro: IPR018557 The THO complex plays a role in coupling transcription elongation to mRNA export. It is composed of subunits THP2, HPR1, THO2 and MFT1 [].
Probab=33.39 E-value=72 Score=32.43 Aligned_cols=100 Identities=23% Similarity=0.275 Sum_probs=68.2
Q ss_pred cEEEEcCCCCCceeecCCCCHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHhcCccccchhhHHHH----HHHHH---
Q psy12312 639 KQVTVGMPPANEHTITAPLPENELRHLIHVTYGDDESSAMLTQELLVYLAMFIRTEPQLFLEMLRLRV----GLIIQ--- 711 (1045)
Q Consensus 639 KqvtVG~~~~~E~~Is~Pl~~~ei~~~I~~~~~~d~~~~vL~QElliyLg~lIrt~P~LF~gmL~lRv----G~iiq--- 711 (1045)
|||-+.-+..+|.++..=-||.||+.++..++..+...+.|--+|.=||.-+= |-|=|- -+++|
T Consensus 17 ~qve~sd~~~~~~~vd~~~pP~el~~iLe~y~~~~~d~~~lr~~L~~YLD~IK---------m~RAkY~lENky~L~~tL 87 (132)
T PF09432_consen 17 KQVEISDPEVSEFVVDDWNPPKELQSILEKYNTPSTDTEELRAQLDRYLDDIK---------MERAKYSLENKYSLQDTL 87 (132)
T ss_pred HHhcccCCCcceeeecCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHH---------HHHHHHhhhhHHHHHHHH
Confidence 44555555569999999999999999999999989999999999999997642 222221 13333
Q ss_pred -HHHHHHhhhhccchh-hhHH-HhhcCChHHHHHHHHHHccC
Q psy12312 712 -VMATELSRTLICTGE-EASE-HLLNLSPFEMKNLLHHILSG 750 (1045)
Q Consensus 712 -~m~~eLar~~~~~~~-ea~e-~L~~LSP~eik~lL~~vLs~ 750 (1045)
.++.|+++= ..+ +..| .++.=+|+-||++|+.|=+-
T Consensus 88 ~~LtkEVn~W---r~ewd~iE~~mFGD~pnSmkkMl~nvesl 126 (132)
T PF09432_consen 88 NQLTKEVNYW---RKEWDNIEMLMFGDGPNSMKKMLQNVESL 126 (132)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 344444421 111 2233 34567999999999988553
No 28
>PF11305 DUF3107: Protein of unknown function (DUF3107); InterPro: IPR021456 Some members in this family of proteins are annotated as ATP-binding proteins however this cannot be confirmed. Currently no function is known.
Probab=31.33 E-value=58 Score=30.14 Aligned_cols=34 Identities=15% Similarity=0.325 Sum_probs=30.4
Q ss_pred EEEEcCCCC-CceeecCCCCHHHHHHHHHHHcCCc
Q psy12312 640 QVTVGMPPA-NEHTITAPLPENELRHLIHVTYGDD 673 (1045)
Q Consensus 640 qvtVG~~~~-~E~~Is~Pl~~~ei~~~I~~~~~~d 673 (1045)
+|.+|+... +|-+|+...+++|+.+.|.++..++
T Consensus 2 eIkIGi~~~~REl~ies~~s~dev~~~v~~Al~~~ 36 (74)
T PF11305_consen 2 EIKIGIQNVARELVIESDQSADEVEAAVTDALADG 36 (74)
T ss_pred eEEEeeecCCceEEEecCCCHHHHHHHHHHHHhCC
Confidence 588999877 9999999999999999999998544
No 29
>PF03200 Glyco_hydro_63: Mannosyl oligosaccharide glucosidase; InterPro: IPR004888 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of eukaryotic enzymes belonging to glycosyl hydrolase family 63 (GH63 from CAZY). They catalyse the specific cleavage of the non-reducing terminal glucose residue from Glc(3)Man(9)GlcNAc(2). Mannosyl oligosaccharide glucosidase 3.2.1.106 from EC is the first enzyme in the N-linked oligosaccharide processing pathway. ; GO: 0004573 mannosyl-oligosaccharide glucosidase activity, 0009311 oligosaccharide metabolic process
Probab=31.17 E-value=1.8e+02 Score=38.05 Aligned_cols=120 Identities=18% Similarity=0.329 Sum_probs=68.5
Q ss_pred cCCCCCCCHHHHHHHHHHHH--HHhccCCceeeccC-C-CCCCCCCCCCCCCCChhhhhccCCCCcchhhhHHHHHHHHH
Q psy12312 229 FPAFAVDDPLLISETREAIV--SKLRGKYGCKRFLR-D-GYRTPKEDPNRLHYDPLELRMFENIESEWPLFFCYLILDFC 304 (1045)
Q Consensus 229 ~p~fav~Dp~~~~~T~~~I~--~kL~g~yGvkRY~~-D-gy~t~~ed~~r~~Y~~~e~~~feg~E~ewplf~~~l~i~~i 304 (1045)
.+.++++.+ +..+.++.+. ++|..+||++==.. | -|.+.-...+..|... .-|.-.- ||++.++
T Consensus 663 l~ll~~ds~-~L~~~L~~l~D~~ef~s~yGirSLSk~~~~y~~~~~e~d~~YWRG----------pIW~~~N-yL~i~aL 730 (801)
T PF03200_consen 663 LGLLPPDSE-RLERLLERLLDEDEFWSPYGIRSLSKSDPFYGPGENEHDPSYWRG----------PIWIPIN-YLLIEAL 730 (801)
T ss_pred hccCCCCHH-HHHHHHHHhcChhhccCCCCCccccCCCccccccCCccCCCcccC----------ccchhhH-HHHHHHH
Confidence 455565555 8888888887 78888999853221 1 1211000001111111 1565444 8888877
Q ss_pred H-cC-----CHHHHHHHHHHHHhhhhcc----CCCceecccccccCcccccccccCCCcceecccCCCCcc-chhHHHHH
Q psy12312 305 F-QG-----DEARVKEYGEALDKVMVQG----EEGMKFVPQLYAVPPEHVDEEYKNPGCVERIALGRCPLL-WAQSLYIL 373 (1045)
Q Consensus 305 ~-~G-----~~e~A~ey~e~L~~~~~~~----~~g~~LlPE~Y~V~~~~v~~e~~~p~s~~r~p~gn~Pll-Wsqslyi~ 373 (1045)
. -| ..++|.++...|..-++.+ -...+.+=|+| +|. +..+.|+-||. |+=....+
T Consensus 731 ~~y~~~~g~~~~~a~~~y~~Lr~nli~nv~~~~~~tg~~~E~Y------------~~~--tG~g~g~~~FtGWtslv~~i 796 (801)
T PF03200_consen 731 RRYGYYYGPYQERAKEIYKELRKNLINNVYKEYKRTGYFWEQY------------NPE--TGRGQGAHPFTGWTSLVVLI 796 (801)
T ss_pred HHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHhhcccEEEeE------------CCC--CCcccCCCCCCchHHHHHHH
Confidence 7 44 3556666666655444321 12334788887 344 45778999998 99776655
Q ss_pred H
Q psy12312 374 G 374 (1045)
Q Consensus 374 ~ 374 (1045)
.
T Consensus 797 m 797 (801)
T PF03200_consen 797 M 797 (801)
T ss_pred H
Confidence 3
No 30
>PF03632 Glyco_hydro_65m: Glycosyl hydrolase family 65 central catalytic domain; InterPro: IPR005195 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The family of glycosyl hydrolases (GH65 from CAZY) which contains this domain includes vacuolar acid trehalase and maltose phosphorylase. Maltose phosphorylase (MP) is a dimeric enzyme that catalyzes the conversion of maltose and inorganic phosphate into beta-D-glucose-1-phosphate and glucose. The central domain is the catalytic domain, which binds a phosphate ion that is proximal the the highly conserved Glu. The arrangement of the phosphate and the glutamate is thought to cause nucelophilic attack on the anomeric carbon atom []. The catalytic domain also forms the majority of the dimerisation interface.; GO: 0003824 catalytic activity, 0005975 carbohydrate metabolic process; PDB: 1H54_A.
Probab=26.69 E-value=4.5e+02 Score=31.23 Aligned_cols=130 Identities=18% Similarity=0.177 Sum_probs=71.8
Q ss_pred cccccccccCCCccccCCcccchhhhhHHHHHHHHHHHHHHcCCceeeCcc-hHHHHHHHH-HHHHHhCCCCCCCCcccC
Q psy12312 74 DALHAKYHSATGETVVGDTEWGHLQIDAISLYLLILAQMTASGLQIVFCLD-EVAFIQNLV-FYIESAYCIPDYGIWERG 151 (1045)
Q Consensus 74 ~~lh~kY~~~tg~pVvGn~aw~hlQlDa~gl~LlaL~qm~~sGl~ii~t~d-ev~fIqnLV-~yie~~wr~PD~GIWErr 151 (1045)
+++.+.=+..+|..+.+.-..+..|.-+++-+..+++++...-....|-.+ -++++...- +|..++-..++-|-||..
T Consensus 79 GA~yPWeS~~~G~E~t~~~~~~~~e~Hi~adIa~a~~~Y~~~TgD~~~l~~~g~eil~etArfw~sr~~~~~~~g~y~i~ 158 (370)
T PF03632_consen 79 GAMYPWESARTGEECTGPWPAGDYEIHINADIAYAIWQYYQATGDEEFLREYGAEILFETARFWASRVEYNEDTGRYEIR 158 (370)
T ss_dssp S----SSBSS-SSB----HHHHTT-THHHHHHHHHHHHHHHHH---TTTTTHHHHHHHHHHHHHHHH-EEETTTTEEE--
T ss_pred cceeecccccCccccCCCCCchHhhhcchHHHHHHHHHHHHhCCcHHHHHccCHHHHHHHHHHHHHheEEcCCCCeEEec
Confidence 566666666666665443346789999999999999988766323333333 377777764 456666566777888854
Q ss_pred -----CCCCCCCCcchhhHHHHHHHHHHH-HhhhhhcCCCCCCcchhhchHHHHHHHHHHHHcc
Q psy12312 152 -----DKSNHGLPELNASSIGMAKAALEA-MNELDLFGARGGPSSVIHVLADEAQKCQAVLQSM 209 (1045)
Q Consensus 152 -----~k~N~g~~e~~asSigMa~AALea-i~~~~lfG~~g~~~svi~v~~D~i~r~~~il~~~ 209 (1045)
|.+ |+.---|+++-.||+-.|+. +.-++.++.. .+.+..++..+-+++.+.|
T Consensus 159 ~V~GPDEY-~~~V~NnayTN~ma~~~L~~A~~~~~~~~~~-----~l~~~~~e~~~W~~ia~~i 216 (370)
T PF03632_consen 159 NVTGPDEY-HENVDNNAYTNAMAKWNLRLAAEAAERLGEE-----KLGLTEEEPEKWKEIADKI 216 (370)
T ss_dssp SB--SSTT-S-SBS--HHHHHHHHHHHHHHHHHHTTS-HH-----HHT--HHHHHHHHHHHHTB
T ss_pred ccCchhcc-cCCCCCcHHHHHHHHHHHHHHHHHHHHCchh-----hcCCCHHHHHHHHHHHhcC
Confidence 333 34455689999999999985 5555777744 3344444554445566555
No 31
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=26.11 E-value=1.1e+02 Score=26.34 Aligned_cols=28 Identities=21% Similarity=0.439 Sum_probs=24.3
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy12312 295 FFCYLILDFCFQGDEARVKEYGEALDKV 322 (1045)
Q Consensus 295 f~~~l~i~~i~~G~~e~A~ey~e~L~~~ 322 (1045)
|..|+++.+...|+.++|++|.+.+..+
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~ 30 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEI 30 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 5568899999999999999999999888
No 32
>PRK13272 treA trehalase; Provisional
Probab=25.45 E-value=9.9e+02 Score=30.05 Aligned_cols=81 Identities=15% Similarity=0.165 Sum_probs=49.6
Q ss_pred CcchhhhHHHHHHHHHH-cCCHHHHHHHHHHHHhhhhccCCCceecccccccCcccccccccCCCcceecccCCCCccch
Q psy12312 289 ESEWPLFFCYLILDFCF-QGDEARVKEYGEALDKVMVQGEEGMKFVPQLYAVPPEHVDEEYKNPGCVERIALGRCPLLWA 367 (1045)
Q Consensus 289 E~ewplf~~~l~i~~i~-~G~~e~A~ey~e~L~~~~~~~~~g~~LlPE~Y~V~~~~v~~e~~~p~s~~r~p~gn~PllWs 367 (1045)
.+.|+--- |+++.++. .|..+.|+++..+-.......=+..+-|.|.|.|... ...|.....++ ..=|-|+
T Consensus 454 PN~WaPlq-~i~i~GL~~yG~~~lA~~La~rwl~~~~~~~~~~g~m~EKYdv~~~------g~~GgGGEY~~-Q~GFGWT 525 (542)
T PRK13272 454 PNGWAPLQ-WVAVDGLRRYGEDALARTIGERFLAQVQALFAREHKLVEKYGLDGN------AAGGGGGEYAL-QDGFGWT 525 (542)
T ss_pred CCccHhHH-HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhcCceeEEeecCCC------CCCCCCCCcCC-CCCCCCH
Confidence 35798777 99999998 7889999999888666543211112379999976411 11111100111 1139999
Q ss_pred hHHHHHHHHH
Q psy12312 368 QSLYILGRLL 377 (1045)
Q Consensus 368 qslyi~~~ll 377 (1045)
.+.++.....
T Consensus 526 NgV~L~lL~~ 535 (542)
T PRK13272 526 NGVTLMLLNL 535 (542)
T ss_pred HHHHHHHHHH
Confidence 9998865443
No 33
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=24.06 E-value=1.7e+02 Score=21.24 Aligned_cols=27 Identities=22% Similarity=0.256 Sum_probs=21.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy12312 296 FCYLILDFCFQGDEARVKEYGEALDKV 322 (1045)
Q Consensus 296 ~~~l~i~~i~~G~~e~A~ey~e~L~~~ 322 (1045)
.++++..+...|+.++|.+++++...+
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 346777778899999999999998887
No 34
>PLN02567 alpha,alpha-trehalase
Probab=23.69 E-value=9.4e+02 Score=30.21 Aligned_cols=77 Identities=9% Similarity=0.100 Sum_probs=41.1
Q ss_pred CcchhhhHHHHHHHHHH-cCCHH---HHHHHHHHHHhhhhc--cCCCceecccccccCcccccccccCCCcceecccCCC
Q psy12312 289 ESEWPLFFCYLILDFCF-QGDEA---RVKEYGEALDKVMVQ--GEEGMKFVPQLYAVPPEHVDEEYKNPGCVERIALGRC 362 (1045)
Q Consensus 289 E~ewplf~~~l~i~~i~-~G~~e---~A~ey~e~L~~~~~~--~~~g~~LlPE~Y~V~~~~v~~e~~~p~s~~r~p~gn~ 362 (1045)
.+.|+--- ||++.++. .|..+ .|+++..+....... ..+| -+-|.|.+... ...|+..+.+. ..
T Consensus 459 Pn~W~pl~-~l~i~GL~~yG~~ea~~lA~~la~rwl~~~~~~~~~tg--~m~EkYd~~~~------~~~GgGGey~~-q~ 528 (554)
T PLN02567 459 PNAWAPLQ-HMIVEGLAASGSKEGKALAEDIARRWLRSNYVAYKKTG--AMHEKYDARYC------GEVGGGGEYIP-QT 528 (554)
T ss_pred CCcCHhHH-HHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHhcC--ceEEeECCCCc------cccCCCCCCCC-CC
Confidence 34788666 99999998 66553 455543332221111 1344 79999976421 12232111111 12
Q ss_pred CccchhHHHHHHH
Q psy12312 363 PLLWAQSLYILGR 375 (1045)
Q Consensus 363 PllWsqslyi~~~ 375 (1045)
=|-|+.+.++.-.
T Consensus 529 GFGWTngV~L~ll 541 (554)
T PLN02567 529 GFGWSNGVVLSLL 541 (554)
T ss_pred CcChHHHHHHHHH
Confidence 2789999877643
No 35
>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. This group contains bacterial SQCY which catalyzes the convertion of squalene to hopene or diplopterol and eukaryotic OSQCY which transforms the 2,3-epoxide of squalene to compounds such as, lanosterol in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain.
Probab=23.50 E-value=1.6e+03 Score=28.48 Aligned_cols=112 Identities=12% Similarity=-0.005 Sum_probs=60.7
Q ss_pred CcccccCCC---chhHHHHHHHHHh------cHHHHHHHHHHHHHHHhcchhhHHhhhccCCCCcccccccc--cCCCcc
Q psy12312 19 INLVPAQTH---LRTNVDTRLGFFI------GRYSCVKLMRGLLMAMMQQKHKVEQFKITQNPLDALHAKYH--SATGET 87 (1045)
Q Consensus 19 tGl~pAs~~---VRDa~yt~~Al~~------l~~~A~k~mr~LL~~~m~q~~kve~fk~~~~~~~~lh~kY~--~~tg~p 87 (1045)
.|.+...+. +-|.+++++|+.. ......|..+||+..=+. ++.+.....|. ..||-+
T Consensus 296 ~g~~~~~~~~s~~wDTala~~AL~~ag~~~~~~~~l~ka~~wL~~~Q~~------------~~~gdw~~~~~~~~~GGW~ 363 (634)
T cd02892 296 EGMKMCQTNGSQVWDTALAVQALLEAGLAPEFDPALKKALDWLLESQIL------------DNPGDWKVKYRHLRKGGWA 363 (634)
T ss_pred CCcEEEcCCCCchHHHHHHHHHHHHcCCCccchHHHHHHHHHHHHHHcC------------CCCCchhhhCCCCCCCCCC
Confidence 455544332 9999999999973 445666766666543220 11122222221 122222
Q ss_pred c-cCCcccchhhhhHHHHHHHHHHHHHHcCCceeeCcchHHHHHHHHHHHHHhCCCCCCCC
Q psy12312 88 V-VGDTEWGHLQIDAISLYLLILAQMTASGLQIVFCLDEVAFIQNLVFYIESAYCIPDYGI 147 (1045)
Q Consensus 88 V-vGn~aw~hlQlDa~gl~LlaL~qm~~sGl~ii~t~dev~fIqnLV~yie~~wr~PD~GI 147 (1045)
- ..|+.| =-.|.|++.|.+|..+....-. -....-+.++.-++||.+. +.||=|.
T Consensus 364 fs~~~~~~--pd~d~Ta~~l~AL~~~~~~~~~--~~~~~~~~i~~Av~wLl~~-Qn~dGgf 419 (634)
T cd02892 364 FSTANQGY--PDSDDTAEALKALLRLQELPPF--GEKVSRERLYDAVDWLLGM-QNSNGGF 419 (634)
T ss_pred CCCCCCCC--CCcCchHHHHHHHHHhhccCCc--chhhHHHHHHHHHHHHHhc-cCCCCCE
Confidence 1 001111 2368999999999875432100 0012347888889999864 6677554
No 36
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=22.67 E-value=1.7e+02 Score=21.98 Aligned_cols=29 Identities=17% Similarity=0.024 Sum_probs=23.2
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Q psy12312 295 FFCYLILDFCFQGDEARVKEYGEALDKVM 323 (1045)
Q Consensus 295 f~~~l~i~~i~~G~~e~A~ey~e~L~~~~ 323 (1045)
+.--++..+...|+.++|.+++++...+.
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 34467788888999999999999988874
No 37
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=22.02 E-value=1.1e+02 Score=21.91 Aligned_cols=26 Identities=27% Similarity=0.138 Sum_probs=21.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy12312 297 CYLILDFCFQGDEARVKEYGEALDKV 322 (1045)
Q Consensus 297 ~~l~i~~i~~G~~e~A~ey~e~L~~~ 322 (1045)
++++..+...|+.++|.++++++...
T Consensus 4 ~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 4 YRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 36677778899999999999998765
No 38
>COG4801 Predicted acyltransferase [General function prediction only]
Probab=22.00 E-value=65 Score=35.91 Aligned_cols=46 Identities=24% Similarity=0.343 Sum_probs=33.5
Q ss_pred hHHHHHHH-HHHcCCHHHHHHHHHHHHhhhhccCCCceecccccccCcccc
Q psy12312 295 FFCYLILD-FCFQGDEARVKEYGEALDKVMVQGEEGMKFVPQLYAVPPEHV 344 (1045)
Q Consensus 295 f~~~l~i~-~i~~G~~e~A~ey~e~L~~~~~~~~~g~~LlPE~Y~V~~~~v 344 (1045)
+|+||++. .+..||.++|++++|.+..- ..|...+|+-|.|.+|.+
T Consensus 121 ~fl~lyl~vllrlGr~eeaeklleelfes----d~~pl~Ip~~~~vsderi 167 (277)
T COG4801 121 EFLFLYLSVLLRLGRAEEAEKLLEELFES----DGGPLIIPADYIVSDERI 167 (277)
T ss_pred EEEhhHHHHHHhccchHHHHHHHHHHHhc----cCCceeecccceechhhE
Confidence 44455555 44599999999998887643 447778999998886643
Done!