RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy12312
(1045 letters)
>gnl|CDD|216082 pfam00723, Glyco_hydro_15, Glycosyl hydrolases family 15. In
higher organisms this family is represented by
phosphorylase kinase subunits.
Length = 416
Score = 184 bits (468), Expect = 1e-50
Identities = 100/360 (27%), Positives = 133/360 (36%), Gaps = 128/360 (35%)
Query: 44 SCVKLMRGLLMAMMQQKHKVEQFKITQNPLDALHAKYHSATGETVVGDTEWGHLQIDAIS 103
S KLMRG L AM +Q+ K + L + G VG+ WG LQ+D +
Sbjct: 70 SLAKLMRGYLQAMYRQQGKSNPSGERE--SGGLGEPGFNGDGPVRVGNDAWGRLQLDGPA 127
Query: 104 LYLLILAQMTASGLQIVFCLDEVAFIQNLVFYIESAYCIPDYGIWERGDKSNHGLPELNA 163
L + L Q TASGL I+ LDEV ++NL+ Y+E A+ PD+G+WE N G
Sbjct: 128 LRAIALIQYTASGLVIIDTLDEV--VKNLLDYVERAWNEPDFGLWE----ENGGRSFF-- 179
Query: 164 SSIGMAKAALEAMNELDLFGARGGPSSVIHVLADEAQKCQAVLQSMLPRESSSKELDSGL 223
SS M KA LEA++ +LFG G AQ
Sbjct: 180 SSAVMWKALLEAIDFAELFGDGG-----------SAQLYS-------------------- 208
Query: 224 LSVISFPAFAVDDPLLISETREAIVSKLRGKYGCKRFLRDGYRTPKEDPNRLHYDPLELR 283
T + I++KL+ + G+
Sbjct: 209 ------------------STADEILNKLQER---------GF------------------ 223
Query: 284 MFENIESEWPLFFCYLILDFCFQGDEARVKEYGEALDKVMVQGEEGMKFVPQLYAVPPEH 343
WPLF Y+ L F EY LD ++ +P L PP+
Sbjct: 224 --------WPLFNTYIQLYGDF--------EYRSGLDASLL-------LLPILGFDPPDD 260
Query: 344 VDEEYKNPGCVERIALGRCPLLWAQSLYILGRLLQHGFLATGELDPLNRRLCSEKKPDVV 403
P + A YIL LL GFL +GE DPL RR + PDVV
Sbjct: 261 -------------------PRILATLKYILDSLLSDGFLNSGESDPLVRRYPEDVYPDVV 301
Score = 75.6 bits (186), Expect = 3e-14
Identities = 27/118 (22%), Positives = 40/118 (33%), Gaps = 17/118 (14%)
Query: 592 TVKDLLKILYEKACQQKLWGLVRHTAGMLGKRVEDLAKAVTDLLVRQKQVTVGMPPANEH 651
+ L LY A + + W L R+ G K V TVG P ++
Sbjct: 315 AAEQLYDELYHWAGRGR-WTLTRYARGFFEKLVSS---------------TVGTPYSSST 358
Query: 652 TITAPLPENELRHLIHVTYGD-DESSAMLTQELLVYLAMFIRTEPQLFLEMLRLRVGL 708
I+ PL E + S +L++E+ Y + P F LR L
Sbjct: 359 FISIPLAVKEYADGFVKAVEEYANSLGLLSEEVDRYTGEQLGAFPLTFSHAALLRAAL 416
>gnl|CDD|225922 COG3387, SGA1, Glucoamylase and related glycosyl hydrolases
[Carbohydrate transport and metabolism].
Length = 612
Score = 32.4 bits (74), Expect = 1.4
Identities = 66/339 (19%), Positives = 113/339 (33%), Gaps = 89/339 (26%)
Query: 69 TQNPLDALHAKYHSATGETVVGDTEWGHLQIDAISLYLLILAQMTASGLQIVFCLDEV-A 127
Q P L+ KY + + W + S + I + + LD +
Sbjct: 316 VQTPNGKLYHKY---SIDGSDLAESWLPVSGYYNSFPVRI-----GNTALVQGALDVYGS 367
Query: 128 FIQNLVFYIESAYCI--------------------PDYGIWE-RGDKSNHGLPELNASSI 166
+ ++ FY + PD+ +WE RG + +
Sbjct: 368 IMNDIYFYAKYYAIYILPAADYLRRMEKIKANLPTPDFDLWEERGGHFTY--------TK 419
Query: 167 GMAKAALEAMNEL-DLFGARGGPSSVIHVLADE----------AQKCQAVLQSMLPRESS 215
A L+A +L + FG +G + ADE A+ ++S+ +
Sbjct: 420 ATVYAGLDAAADLAEEFGDKG-SAEHWRKTADELKEAVLRRGYAEDGGYFVRSLGRKPD- 477
Query: 216 SKELDSGLLSVISFPAFAVDDPLLISETREAIVSKLRGK-YGCKRFLRDGYRTPKEDPNR 274
+D+ LL ++ F DDP +++ T EAI +L G +R Y +D
Sbjct: 478 -DTVDASLLGLVLFGFIPPDDPRILA-TVEAIERELLVDGGGIRR-----YNNEYDD--G 528
Query: 275 LHYDPLELRMFENIESEWPLFFCYLILDFCFQGDEARVKEYGEALDKVMVQGEEGMKFVP 334
L D W + +L + G K+ E L + G+
Sbjct: 529 LGGD----------NGPWIITTLWLSEYYLALGRLDEAKKLLEWL--LAFASPLGLL--- 573
Query: 335 QLYAVPPEHVDEEYKNPGCVERIALGRCPLLWAQSLYIL 373
PE VD+ P LG PL W+ + +I+
Sbjct: 574 ------PEQVDDGSGEP-------LGAFPLAWSHAEFII 599
>gnl|CDD|219873 pfam08506, Cse1, Cse1. This domain is present in Cse1 nuclear
export receptor proteins. Cse1 mediates the nuclear
export of importin alpha. This domain contains HEAT
repeats.
Length = 370
Score = 31.5 bits (72), Expect = 2.3
Identities = 22/58 (37%), Positives = 27/58 (46%), Gaps = 10/58 (17%)
Query: 858 FALAVETVLNCI-PQPEYRQLVVEALMVLTLIAER-------NFVSTLGDIIVVENIV 907
F AV +L PQP+Y LV +AL LT +A R N S L I E +V
Sbjct: 138 FVTAVWNLLVSTSPQPKYDILVSKALSFLTSVARRPHYAELFNNESVLKQIC--EKVV 193
>gnl|CDD|116875 pfam08291, Peptidase_M15_3, Peptidase M15.
Length = 110
Score = 28.8 bits (65), Expect = 4.6
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 237 PLLISETREAIVSKLRGKYGCKRFLRDGYRTPK 269
P + A + LR K G + GYR+P
Sbjct: 23 PTAEAPELLAKLQALREKLGSPIVITSGYRSPV 55
>gnl|CDD|177691 PLN00060, PLN00060, meiotic recombination protein SPO11-2;
Provisional.
Length = 384
Score = 30.6 bits (69), Expect = 5.0
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 823 YIRVWNVLEKCQGLLLEGRL 842
++RVW V+E C +L EG+L
Sbjct: 98 FVRVWKVMEMCYQILGEGKL 117
>gnl|CDD|223536 COG0460, ThrA, Homoserine dehydrogenase [Amino acid transport and
metabolism].
Length = 333
Score = 30.2 bits (69), Expect = 5.3
Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Query: 401 DVVVQVVILAEDA-DIQEKLEQHDIYVQTISDVAPIEVQPARVLSHLYTYLGR 452
D ++VILA A E L+ D+ V+ I+ + P +++ A+ L ++ +G
Sbjct: 210 DAARKLVILARLAFGTPETLD--DVEVEGITPITPEDIEFAKELGYVIKLVGI 260
>gnl|CDD|182248 PRK10116, PRK10116, universal stress protein UspC; Provisional.
Length = 142
Score = 29.3 bits (66), Expect = 5.7
Identities = 29/93 (31%), Positives = 37/93 (39%), Gaps = 23/93 (24%)
Query: 694 EPQLFLEMLRLRVGLIIQVMATELSRTLICTGEEASEHLLNLSPFEMKNLLHHILSGKEF 753
E Q FL+ L I+ +T I G E SEH+L + HH +
Sbjct: 64 ETQSFLDKLIQDADYPIE-------KTFIAYG-ELSEHILEVC------RKHHF----DL 105
Query: 754 AISSVGRGNLSVVSRKS---GRVSKKSQIDGLL 783
I G N S SR S RV S++D LL
Sbjct: 106 VI--CGNHNHSFFSRASCSAKRVIASSEVDVLL 136
>gnl|CDD|131396 TIGR02343, chap_CCT_epsi, T-complex protein 1, epsilon subunit.
Members of this family, all eukaryotic, are part of the
group II chaperonin complex called CCT (chaperonin
containing TCP-1) or TRiC. The archaeal equivalent group
II chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
epsilon chain (part of a paralogous family) from
animals, plants, fungi, and other eukaryotes.
Length = 532
Score = 30.5 bits (69), Expect = 5.7
Identities = 31/122 (25%), Positives = 52/122 (42%), Gaps = 15/122 (12%)
Query: 872 PEYRQLVVEALMVLTLIAERNFVSTLGDIIVVEN---------IVHKANQIFLEDQVRVN 922
P +++L + L L+ E +F +T ++V+E + N++ +E+ R
Sbjct: 338 PRFQELSKDKLGKAGLVREISFGTTKDRMLVIEQCKNSKAVTIFIRGGNKMIIEEAKRSI 397
Query: 923 GDATLCCAKPKDEAYLKSSGGLLCGGAAFI-CQHLYDSAPGGSFGTMNYLMRATAEMLDC 981
DA LC + +K S + GGAA I C G Y +RA A+ L+
Sbjct: 398 HDA-LCVVR----NLIKDSRIVYGGGAAEISCSLAVSQEADKYSGVEQYAIRAFADALET 452
Query: 982 FP 983
P
Sbjct: 453 IP 454
>gnl|CDD|187861 cd09730, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1.
CRISPR (Clustered Regularly Interspaced Short
Palindromic Repeats) and associated Cas proteins
comprise a system for heritable host defense by
prokaryotic cells against phage and other foreign DNA;
Large proteins, some contain Zn-finger domain; signature
gene for I-A subtype; also known as TM1802 family.
Length = 579
Score = 29.6 bits (67), Expect = 9.4
Identities = 24/93 (25%), Positives = 33/93 (35%), Gaps = 14/93 (15%)
Query: 550 EELLTMLRESECLEEQGDILQYLVDTQGLNYD---TGMMEEGQAVTVKDLLKILYE---- 602
+ M+ +SE L DI ++ + G V V LL I Y
Sbjct: 450 KGGEKMVEKSEELVLDEDIKEFFRKNNEFFNSPQKKALFLLG--VLVGKLLNIQYSKDEN 507
Query: 603 KACQQKLWGLVRHTAGMLGKRVEDLAKAVTDLL 635
K KL GL M K+V L V++ L
Sbjct: 508 KPFLNKLNGL-----KMDKKKVIRLLNEVSNKL 535
>gnl|CDD|223897 COG0827, COG0827, Adenine-specific DNA methylase [DNA replication,
recombination, and repair].
Length = 381
Score = 29.8 bits (67), Expect = 9.5
Identities = 16/71 (22%), Positives = 22/71 (30%), Gaps = 6/71 (8%)
Query: 245 EAIVSKLRGKYGCKRFLRDGYRTPKEDPNRLHYDPLELRMFENIESEWPLFFCYLILDFC 304
+ I+ K GK TP E + YD + N + E ILDFC
Sbjct: 107 QLILPKGVGKGILLENHELQLITPDEIGLLIDYDEILEEFKANDKRE------ITILDFC 160
Query: 305 FQGDEARVKEY 315
+
Sbjct: 161 SGDFGNLFQTV 171
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.137 0.405
Gapped
Lambda K H
0.267 0.0737 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 53,530,355
Number of extensions: 5396793
Number of successful extensions: 4147
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4141
Number of HSP's successfully gapped: 17
Length of query: 1045
Length of database: 10,937,602
Length adjustment: 107
Effective length of query: 938
Effective length of database: 6,191,724
Effective search space: 5807837112
Effective search space used: 5807837112
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (28.4 bits)