RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12312
(1045 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 62.2 bits (150), Expect = 9e-10
Identities = 94/665 (14%), Positives = 206/665 (30%), Gaps = 183/665 (27%)
Query: 8 EALVSVLT----DSLINLVPAQTHLRTNVDTRLGF-------FIGRYSCVKLMRGLLMAM 56
+ S+L+ D +I A + T L F+ +++ LM+
Sbjct: 40 DMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVE--EVLRINYKFLMSP 97
Query: 57 MQQKHK-----VEQFKITQNPL---DALHAKYHSATGETVVGDTEWGHLQIDAISLYLLI 108
++ + + + ++ L + + AKY+ + + + + L + + +
Sbjct: 98 IKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQA--LLELRPAKNV-L 154
Query: 109 LAQMTASG---LQIVFCLDE--VAFIQNLVFYIESAYCIPDYGIWERGDKSNHGL-PELN 162
+ + SG + + CL + +F++ C + E K + + P
Sbjct: 155 IDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWT 214
Query: 163 ASSIGMAKAAL---EAMNEL-DLFGARGGPSSVIHVLADEAQKCQAVLQSMLPRESSSKE 218
+ S + L EL L ++ + ++ VL + V ++K
Sbjct: 215 SRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL-VLLN-------V--------QNAKA 258
Query: 219 LDSGLLSVISFPAFAVDDPLLISETREA-IVSKLRGKYGCKRFL---RDGYRTPKED--- 271
+ AF + +L++ TR + L L TP E
Sbjct: 259 WN----------AFNLSCKILLT-TRFKQVTDFLSAATTTHISLDHHSMTL-TPDEVKSL 306
Query: 272 -PNRLHYDPLELRMFENIESEWPLFFCYLILDFCFQGDEARVKEY----GEALDKVM--- 323
L P +L + + P +I + + A + + L ++
Sbjct: 307 LLKYLDCRPQDLP--REVLTTNPRRLS-IIAESI-RDGLATWDNWKHVNCDKLTTIIESS 362
Query: 324 --VQGEEGMKFVPQLY---AVPPEHVDEEYKNPGCVERIALGRCPLLWAQSLYILGRLLQ 378
V + +++ +V P I L+W + ++
Sbjct: 363 LNVLEPAEYR---KMFDRLSVFPPSAH-----------IPTILLSLIWFDVIKSDVMVV- 407
Query: 379 HGFLATGELDPLNRRLCSEKKPD---VVVQVVILAEDADIQEKLEQHDIYV---QTISDV 432
++ L++ EK+P + + + L ++ + H V
Sbjct: 408 --------VNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTF 459
Query: 433 APIEVQPARVLSHLYTYLGRN-EKLELTGRKSRDVGILSTSKLYALHDRIFAFTPQTCID 491
++ P + + Y+++G + + +E R + ++ D F F Q
Sbjct: 460 DSDDLIPPYLDQYFYSHIGHHLKNIEHPERMT------LFRMVFL--D--FRFLEQKIRH 509
Query: 492 DFLAANASSSNSSQLQTPKGRTPSPETGETPPLWNMGATSVTPRTRVNSEAHYADTE--- 548
D A NAS S + LQ K + + D +
Sbjct: 510 DSTAWNASGSILNTLQQLK----------------------------FYKPYICDNDPKY 541
Query: 549 ---VEELLTMLR--ESECLE-EQGDILQYLVDTQGLNYDTGMMEEGQAVTVKDLLKILYE 602
V +L L E + + D+L+ +M E +A+ +E
Sbjct: 542 ERLVNAILDFLPKIEENLICSKYTDLLRI-----------ALMAEDEAI---------FE 581
Query: 603 KACQQ 607
+A +Q
Sbjct: 582 EAHKQ 586
Score = 58.3 bits (140), Expect = 1e-08
Identities = 81/519 (15%), Positives = 150/519 (28%), Gaps = 129/519 (24%)
Query: 538 VNSEAHYADTEVEELLTMLRESECLEEQGDILQYLVDTQGLNYDTGMMEEGQAVTVK--- 594
V +A + + +++ M + EE I+ G + Q V+
Sbjct: 24 VFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFV 83
Query: 595 -DLLKILYE-------KACQQ-------------KLWGLVRHTAGMLGKRVEDLAKAVTD 633
++L+I Y+ +Q +L+ + A R++ K
Sbjct: 84 EEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQA 143
Query: 634 L--LVRQKQVTV-GMPPANEHTITAPLPENELRHL--------IHVTYGDDESSAMLTQE 682
L L K V + G+ + + + + + +++ + + + +
Sbjct: 144 LLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ 203
Query: 683 LLVYLAMFIRTEPQLFLEMLRLRVGLIIQVMATELSRTLICTGEEASEHLLNLSPFEMKN 742
L+Y T ++LR I + EL R LL P+E
Sbjct: 204 KLLYQIDPNWTSRSDHSSNIKLR----IHSIQAELRR------------LLKSKPYE-NC 246
Query: 743 LLHHILSG-------KEFAISS---VGRGNLSVV-SRKSGRVSKKSQIDGLLGVKPDQ-- 789
LL +L F +S + V + + S + + PD+
Sbjct: 247 LL--VLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK 304
Query: 790 ------LDVGADDVEPDRQGQWLRRRRLDG---ALNRVP---RDFYIRVWNVLEKCQGLL 837
LD D L R L L+ + RD W+ +
Sbjct: 305 SLLLKYLDCRPQD---------LPREVLTTNPRRLSIIAESIRDGLAT-WDNWKHVNCDK 354
Query: 838 LEGRLLPHGLTQEMTSGELK---FALAV--ETVLNCIP---------QPEYR--QLVVEA 881
L ++ L + E + L+V + IP +VV
Sbjct: 355 LT-TIIESSLNV-LEPAEYRKMFDRLSVFPPSAH--IPTILLSLIWFDVIKSDVMVVVNK 410
Query: 882 LMVLTLIAERNFVSTLG--DIIVVENIVHKANQIFLEDQV--RVNGDATLC---CAKPKD 934
L +L+ ++ ST+ I +E V N+ L + N T P
Sbjct: 411 LHKYSLVEKQPKESTISIPSIY-LELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYL 469
Query: 935 EAYLKSSGGLLCGGAAFICQHLYDSAPGGSFGTMN--YL 971
+ Y S I HL + +L
Sbjct: 470 DQYFYS----------HIGHHLKNIEHPERMTLFRMVFL 498
Score = 57.6 bits (138), Expect = 2e-08
Identities = 77/531 (14%), Positives = 143/531 (26%), Gaps = 166/531 (31%)
Query: 54 MAMMQQKHKVEQFKITQNPLDA----LHAKYHSATGETVVGDTEWGHL--QIDAISLYLL 107
Q ++K I DA K ++++ E H+ DA+S L
Sbjct: 11 TGEHQYQYK----DILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR 66
Query: 108 ILAQMTASGLQIVFCLDEVAFIQNLVFYIESAYCIPDYG-IWER-----GDKS------- 154
+ + + ++V F++ ++ +Y + S
Sbjct: 67 LFWTLLSKQEEMVQ-----KFVEEVL--------RINYKFLMSPIKTEQRQPSMMTRMYI 113
Query: 155 ---------NHGLPELNASSIGMAKAALEAMNELD------LFGARG-GPSSVIHVLADE 198
N + N S + +A+ EL + G G G + +A +
Sbjct: 114 EQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKT----WVALD 169
Query: 199 AQKCQAVLQSMLPRESSSKELDSGLLSVISFPAF-----AVDDPLLISETREAIVSKLRG 253
C + + F F + P + E + ++ ++
Sbjct: 170 V--CL----------------SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDP 211
Query: 254 KYGCKRFLRDGYRTPKEDPNRLHYDPLELRMFENIESEWPLFFCYLILDFCFQGDEARV- 312
+ R D R+H ELR P C L+L + V
Sbjct: 212 NW-TSR--SDHSSNI---KLRIHSIQAELRRLL---KSKPYENCLLVLL-----N---VQ 254
Query: 313 -KEYGEALD---KVMV----------QGEEGMKFVPQLYAVPPEHVDE------EYKN-- 350
+ A + K+++ + + DE +Y +
Sbjct: 255 NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR 314
Query: 351 PGCVERIALGRCPLLWAQSLYILGRLLQHG-----FLATGELDPLNR--RLCSEK-KPDV 402
P + R L P L I+ ++ G D L +P
Sbjct: 315 PQDLPREVLTTNPRR----LSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAE 370
Query: 403 V----VQVVILAEDADIQEKL-----------EQHDIYVQTISDVAPIEVQPARVLSHLY 447
++ + A I L + + V + + +E QP +
Sbjct: 371 YRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVV-VNKLHKYSLVEKQPKESTISIP 429
Query: 448 T-YLGRNEKLELTGRKSRDVGILSTSKLYALHDRI---FAFTPQTCIDDFL 494
+ YL KLE YALH I + DD +
Sbjct: 430 SIYLELKVKLE---------------NEYALHRSIVDHYNIPKTFDSDDLI 465
Score = 49.1 bits (116), Expect = 7e-06
Identities = 106/736 (14%), Positives = 207/736 (28%), Gaps = 232/736 (31%)
Query: 201 KCQAVLQSMLP---RESSSKELDSGLLSVISFPAFAVDDPLLISETREAIVSKL------ 251
+ + +L K++ S++S +D +++S+ + +L
Sbjct: 17 QYKDILSVFEDAFVDNFDCKDVQDMPKSILS--KEEIDH-IIMSKDAVSGTLRLFWTLLS 73
Query: 252 RGKYGCKRFLRDGYRTPKEDPNRLHYDPLELRMFENIESEWPLFFCYLILDFCFQGDEAR 311
+ + ++F+ + N Y L I++E +
Sbjct: 74 KQEEMVQKFVEEV-----LRIN---YKFL----MSPIKTE-------------QRQPSMM 108
Query: 312 VKEYGEALDKVMVQGEEGMKFVPQLYAVP-PEHVDEEYKNPGCVERIALGRCPLLWAQSL 370
+ Y E D++ + F Y V + + R AL L
Sbjct: 109 TRMYIEQRDRLY---NDNQVFAK--YNVSRLQPYLKL--------RQAL--------LEL 147
Query: 371 YILGRLLQHGFLATGELDPLNRRLCSEKKPDVVVQVVILAEDADIQEKLEQHDIYVQTIS 430
+L G L +G K V + V +Q K++ I+ +
Sbjct: 148 RPAKNVLIDGVLGSG-------------KTWVALDVC---LSYKVQCKMDFK-IFWLNLK 190
Query: 431 DVAPIEVQPARVLSHLYTYLGRNEKLELTGRKSRDVGI-LSTSKLYALHDRIFAFTP-QT 488
+ E L L + N T R I L + A R+ P +
Sbjct: 191 NCNSPETVLEM-LQKLLYQIDPN----WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN 245
Query: 489 C---IDDFLAANASSSNSSQLQTPKGRTPSPETGETPPLW---NMGA-TSVTPR----TR 537
C + + +Q K W N+ +T R T
Sbjct: 246 CLLVLLN-------------VQNAK-------------AWNAFNLSCKILLTTRFKQVTD 279
Query: 538 VNSEAHYADTEVEELLTMLRESECLEEQGDIL-QYL-VDTQGLNYDTGMMEEGQAVTVKD 595
S A ++ L E +L +YL Q L + +T +
Sbjct: 280 FLSAATTTHISLDHHSMTLTPDEVKS----LLLKYLDCRPQDL--------PREVLTT-N 326
Query: 596 LLKILYEKACQQKLWGLVRHTAGMLGKRVEDLAKAVTDLLVRQKQVTVGMPPANEHTITA 655
++ ++ + + D K V
Sbjct: 327 PRRL------------------SIIAESIRDGL----ATWDNWKHVNC------------ 352
Query: 656 PLPENELRHLIHVTYGDDESSAMLTQELLVYLAMF-----IRTEPQLFLEML-RLRVGLI 709
++L +I + E + +++ L++F I P + L ++ +
Sbjct: 353 ----DKLTTIIESSLNVLEPAEY--RKMFDRLSVFPPSAHI---PTILLSLIWFDVIKSD 403
Query: 710 IQVMATELSRTLICTGEEASEHLLNLSPFEMKNLLHHILSGKEFAISSVGRGNL--SVVS 767
+ V+ +L + L+ P E + I E + L S+V
Sbjct: 404 VMVVVNKLHKYS----------LVEKQPKESTISIPSIYL--ELKVKLENEYALHRSIVD 451
Query: 768 RKSGRVSKKSQIDGLLGVKPDQLD------VG--------ADDVEPDRQG----QWLRRR 809
+ K D L+ P LD +G + + R ++L ++
Sbjct: 452 HY--NIPKTFDSDDLI---PPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQK 506
Query: 810 -RLDGALNRVPRDFYIRVWNVLEKCQGLLLEGRLLPHGLTQEMTSGEL-KFALAVETVLN 867
R D + N L++ + + + + E + F +E L
Sbjct: 507 IRHDSTAWNASGS----ILNTLQQLK--FYKPYICDNDPKYERLVNAILDFLPKIEENLI 560
Query: 868 CIPQPEYRQLVVEALM 883
C Y L+ ALM
Sbjct: 561 CSK---YTDLLRIALM 573
Score = 32.9 bits (74), Expect = 0.67
Identities = 41/265 (15%), Positives = 77/265 (29%), Gaps = 85/265 (32%)
Query: 3 RSRDKEALVSVLTDSLINLVPAQTHLRTNVDTRLGFFIGRYSCVKLMRGLL--------- 53
+ + + L +++ SL L PA+ R D RL F S + LL
Sbjct: 348 KHVNCDKLTTIIESSLNVLEPAE--YRKMFD-RLSVF--PPS-AHIPTILLSLIWFDVIK 401
Query: 54 ---MAMMQQKHK---VEQ---------------FKITQNPLDALHAK----YHSATGETV 88
M ++ + HK VE+ K+ ALH Y+
Sbjct: 402 SDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKT--- 458
Query: 89 VGDTEWGHLQIDAISLYL-------LILAQMT--ASGLQIVFCLDEVAFIQNLVFYIESA 139
+ L + Y L + + ++VF LD F++ + + +A
Sbjct: 459 ---FDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVF-LD-FRFLEQKIRHDSTA 513
Query: 140 YCIP--------DYGIWERGDKSNHGLPELNASSIGMAKAALEAMNELDLFGARGGPSSV 191
+ ++ N E +N + F + + +
Sbjct: 514 WNASGSILNTLQQLKFYKPYICDNDPKYE-------------RLVNAILDFLPKIEENLI 560
Query: 192 IHVLADEAQKCQAVLQSMLPRESSS 216
K +L+ L E +
Sbjct: 561 CS-------KYTDLLRIALMAEDEA 578
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 61.6 bits (149), Expect = 2e-09
Identities = 90/589 (15%), Positives = 171/589 (29%), Gaps = 209/589 (35%)
Query: 357 IALG--RCPLLWAQSLYILGRLLQHGFLATGELDPLNRRLCSEKKPDVVVQVVI-----L 409
++ G LL + + + LQ F L ++ +P ++V +
Sbjct: 11 LSHGSLEHVLLVPTASFFIASQLQEQFNKI--LPEPTEGFAADDEPTTPAELVGKFLGYV 68
Query: 410 AEDADIQEK------------------LEQHDIYVQTISDVAPIEVQPARVLSHLYTYLG 451
+ + + LE +DI+ + + + + Y+
Sbjct: 69 SSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYI- 127
Query: 452 RNEKLELTGRKSRDVGILSTSKLY-ALHD---RIFA-F------------------TPQT 488
+ R S S L+ A+ + ++ A F T
Sbjct: 128 --TARIMAKRPFDKK---SNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHV 182
Query: 489 CIDDFL--AAN-----ASSSNSSQLQTPKG-------RTPSPETGETPPLWNMGATSVT- 533
+ D + +A ++ ++ +G PS TP + + ++
Sbjct: 183 LVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSN----TPDKDYLLSIPISC 238
Query: 534 PRTRVNSEAHYADTEVEELLTMLRESECLEEQGDILQYLVDTQGLNYDTGMMEEGQAV-- 591
P V AHY T T G++ YL +G TG Q +
Sbjct: 239 PLIGVIQLAHYVVTAKLLGFTP----------GELRSYL---KGA---TGH---SQGLVT 279
Query: 592 ---------------TVKDLLKILYE--KACQQ----------KLWGLVRHTAG----ML 620
+V+ + +L+ C + L + + G ML
Sbjct: 280 AVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPML 339
Query: 621 G------KRVEDLAKAVTDLLVRQKQVTVGMPPANEHT---ITAPLPENELRHL------ 665
++V+D L KQV + + N ++ P P+ L L
Sbjct: 340 SISNLTQEQVQDYVNKTNSHLPAGKQVEISL--VNGAKNLVVSGP-PQ-SLYGLNLTLRK 395
Query: 666 IHVTYGDDESSAMLTQELLVYLAMFIR-TEP----------QLFLEMLR----------L 704
G D+S ++ L + F+ P L + L +
Sbjct: 396 AKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDI 455
Query: 705 RV-------GLIIQVMATELSRTL---ICTG----EEASEHLLNLSPFEMKNLLHHILSG 750
++ G ++V++ +S + I E HIL
Sbjct: 456 QIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETT----TQFKA-------THIL-- 502
Query: 751 KEFAISSVGRGNLSVVSRKSGRVSKKSQIDGLLGVK---PDQLDVGADD 796
+F G G S + G ++ + DG GV+ LD+ DD
Sbjct: 503 -DF-----GPGGASGL----GVLTHR-NKDG-TGVRVIVAGTLDINPDD 539
Score = 52.0 bits (124), Expect = 1e-06
Identities = 54/339 (15%), Positives = 95/339 (28%), Gaps = 125/339 (36%)
Query: 147 IWERGDKSNHGLPELNASSIGMAKAALEAMNELD-LFGARGG-------PSSVIHVLADE 198
+W R D H S + + L FG G + + + D
Sbjct: 1645 VWNRADN--HFKDTYGFSILDIVI---NNPVNLTIHFGGEKGKRIRENYSAMIFETIVDG 1699
Query: 199 AQKCQAVLQSMLPRESS-SKELDSGLLSVISF--PAFAVDDPLLISETREAIVSKLRGKY 255
K + + + + +S + + GLLS F PA L+ + A L+
Sbjct: 1700 KLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPAL-----TLMEK---AAFEDLK--- 1748
Query: 256 GCKRFLRD------GYRTPKEDPNRLHYDPLELRMFENIES--EWPLFFCY--L-----I 300
+ L G H S E Y L +
Sbjct: 1749 --SKGLIPADATFAG-----------H-------------SLGE------YAALASLADV 1776
Query: 301 LDFCFQGDEAR-VKEYGEALDKVMVQGEEGMKFVPQLYAVPPEHVDEEYKNPGCVERIAL 359
+ V G + + + E G + A+ NPG R+A
Sbjct: 1777 MSI---ESLVEVVFYRGMTMQVAVPRDELGRSNY-GMIAI----------NPG---RVAA 1819
Query: 360 GRCPLLWAQSLYILGRLLQHGFLATGELDPLNRRLCSEKKPDVVV-------QVVILAED 412
Y++ R+ + TG L +V Q V +
Sbjct: 1820 SFSQ---EALQYVVERVGK----RTGW-------LVE------IVNYNVENQQYVAAGDL 1859
Query: 413 ADIQEKLEQ--HDIYVQTISDVAPIEVQPA--RVLSHLY 447
+ + + + I +Q I D+ ++ + V HL+
Sbjct: 1860 RAL-DTVTNVLNFIKLQKI-DIIELQKSLSLEEVEGHLF 1896
Score = 49.3 bits (117), Expect = 7e-06
Identities = 81/474 (17%), Positives = 135/474 (28%), Gaps = 173/474 (36%)
Query: 565 QGDILQYLVDTQGLNYDTGMMEEGQAVTVKDLLKILYEKACQQKLWGLVRHTAGMLGKRV 624
QG+ Y + + L Y T V V DL+K + L L+R T
Sbjct: 163 QGNTDDYFEELRDL-YQTY------HVLVGDLIK-----FSAETLSELIRTTL-----DA 205
Query: 625 EDLAKAVTDLL--VRQKQVTVGMPPANEHTITAP--LPENELRHLIH---------VTYG 671
E + ++L + T P ++ ++ P P + L H T G
Sbjct: 206 EKVFTQGLNILEWLENPSNT----PDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPG 261
Query: 672 D--DESSAMLTQELLVYLAMFIRTEP------QLFLEMLRL--RVGLIIQ------VMAT 715
+ + A+ I + + + +G+ +
Sbjct: 262 ELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPP 321
Query: 716 ELSRTLICTGEEASEHLLNLSPFEMKNLLHHIL-------SGKEFAISSV-GRGNLSVVS 767
+ + E +L++S + + ++ +GK+ IS V G NL VVS
Sbjct: 322 SILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNL-VVS 380
Query: 768 RKSGRVSKKSQIDGLLGVKPDQLDVGADDVEPDRQGQWLRRRRLDGALN--RVPRDFYIR 825
G P L G + LR+ + L+ R+P F R
Sbjct: 381 -------------GP----PQSL-YGLN--------LTLRKAKAPSGLDQSRIP--FSER 412
Query: 826 VWNVLEKCQGLLLEGRLLP-----H---------GLTQEMTSGELKFA---LAVETVLNC 868
K L R LP H + +++ + F +
Sbjct: 413 ------K---LKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQ------- 456
Query: 869 IPQPEYRQLVVEALMVLTLIAE--RNFVSTLGDIIVVENIVHKANQIFLEDQVRVNGDAT 926
IP V T R ++ E IV + I ++ V + T
Sbjct: 457 IP--------VYD----TFDGSDLRVLSGSI-----SERIV---DCII---RLPVKWETT 493
Query: 927 LCCAKPKDEAYLKSSGGLLCGGAAFICQHLYDSAPGGSFGTMNYLMRATAEMLD 980
F H+ D PGG+ G L T D
Sbjct: 494 T----------------------QFKATHILDFGPGGASG----LGVLTHRNKD 521
Score = 44.3 bits (104), Expect = 3e-04
Identities = 58/360 (16%), Positives = 103/360 (28%), Gaps = 137/360 (38%)
Query: 576 QGLNYDTGM-MEEGQAVTVKDLLKILYEK-ACQQKLWGLV-RHTAGMLGKRVEDLAKAVT 632
QG GM M+ LY+ Q +W H G + D+
Sbjct: 1624 QGSQE-QGMGMD-------------LYKTSKAAQDVWNRADNHFKDTYGFSILDI----- 1664
Query: 633 DLLVRQ--KQVTVGMPPANEHTI------------------TAPLPENELRHLIHVTYGD 672
V +T+ I T + + H T+
Sbjct: 1665 ---VINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRS 1721
Query: 673 DESSAMLTQELLVYLAMFIRTEPQLFL-EMLRLRV----GLIIQ--VMA----TELSRTL 721
++ TQ F T+P L L E GLI A E + L
Sbjct: 1722 EKGLLSATQ--------F--TQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYA-AL 1770
Query: 722 ICTGEEASEHLLNLSPFE--MKNLLHHILSGKEFAISSVGRGNL--SVVSRKSGRVSKKS 777
+ ++ E ++ ++ + RG V R S
Sbjct: 1771 ASLAD-----VM---SIESLVE-VVFY-------------RGMTMQVAVPRDELGRSNY- 1807
Query: 778 QIDGLLGVKPDQLDVGADDVEPDRQGQWLRRRRLDGALNRVPRDFYIRVWNVLEKCQGLL 837
G++ + P ++ E AL V V V ++ L+
Sbjct: 1808 ---GMIAINPGRVAASFSQ-E---------------ALQYV-------VERVGKRTGWLV 1841
Query: 838 ------LEGRLLPHGLTQEMTSGELKFALAVETVLNCIPQPEYRQLVVEALMVLTLIAER 891
+E + Q + +G+L+ A++TV N + + +++ + L +L E
Sbjct: 1842 EIVNYNVENQ-------QYVAAGDLR---ALDTVTNVLNFIKLQKIDIIELQK-SLSLEE 1890
Score = 40.4 bits (94), Expect = 0.004
Identities = 52/348 (14%), Positives = 96/348 (27%), Gaps = 152/348 (43%)
Query: 325 QG--EEGM-KFVPQLYAVPP----------EHVDEEY---------KNPGCVERIALGRC 362
QG E+GM LY H + Y NP
Sbjct: 1624 QGSQEQGMGM---DLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNP----------- 1669
Query: 363 PLLWAQSLYIL-----GRLLQHGFLATGELDPLNRRLCSEKKPDVVVQVVILAEDADIQE 417
+L I G+ ++ + A + E D ++ + ++ + E
Sbjct: 1670 -----VNLTIHFGGEKGKRIRENYSA----------MIFETIVDGKLKTEKIFKEIN--E 1712
Query: 418 KLEQHDIYVQTISDVAPIEVQPARVLSHLYTYLGRNEKLELTGRKSRDVGILSTSKLYAL 477
YT+ L T + + A
Sbjct: 1713 HSTS-------------------------YTFRSEKGLLSAT--QFTQPALTLME--KA- 1742
Query: 478 HDRIFA------FTPQTCIDDFLA--------ANASSSNSSQLQT------PKGRT---- 513
F P D A A AS ++ +++ +G T
Sbjct: 1743 ---AFEDLKSKGLIPA---DATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVA 1796
Query: 514 -PSPETGETPPLWNMGATSVTPRTRVNSEAHYADTEVEELLTMLRESECLEEQGDILQYL 572
P E G + N G ++ P RV A ++ ++ ++ + G +++ +
Sbjct: 1797 VPRDELGRS----NYGMIAINP-GRV--AASFSQEALQYVV-----ERVGKRTGWLVE-I 1843
Query: 573 VDTQGLNYDTGMMEEGQ---------AV-TVKDLLKILYEKACQ-QKL 609
V NY+ E Q A+ TV ++L + + +L
Sbjct: 1844 V-----NYNV----ENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIEL 1882
Score = 38.5 bits (89), Expect = 0.014
Identities = 61/347 (17%), Positives = 101/347 (29%), Gaps = 116/347 (33%)
Query: 107 LILAQMTASGLQIVFCLDEVAFIQNLVFYIESAYCIPDYGIWERGDKSNHGLPELNASSI 166
L+ A A +F ++ I + I G + P +
Sbjct: 277 LVTAVAIAETD------SWESFFVSVRKAITVLFFI--------GVRCYEAYPNTSLPP- 321
Query: 167 GMAKAALEAMNELDLFGARGGPS---SVIHVLADEAQKCQAVLQSMLPRESSSKELDSGL 223
+ + +LE NE G PS S+ ++ ++ Q S LP
Sbjct: 322 SILEDSLEN-NE-------GVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQ-------- 365
Query: 224 LSVISFPAFAVDDPLLISETREAIVSKLRGK----YGCKRFLRDGYRTPKEDPNRLHYDP 279
+ IS L++ + +VS G YG LR D +R+ +
Sbjct: 366 VE-IS----------LVNGAKNLVVS---GPPQSLYGLNLTLRKAKAPSGLDQSRIPFSE 411
Query: 280 LELRM---FENIESEWPLFFC-YLILDFCFQGDEARVKEYGEALDKVMVQ-GEEGMKFVP 334
+L+ F + S P F L A D + + + F
Sbjct: 412 RKLKFSNRFLPVAS--P-FHSHLL----------------VPASDLINKDLVKNNVSFNA 452
Query: 335 QLYAVPPEHV----DEEYKNPGCVERIA--LGRCPLLW-----AQSLYIL---------- 373
+ +P D + ERI + R P+ W ++ +IL
Sbjct: 453 KDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGL 512
Query: 374 GRLLQHGFLATGELDPLNRRLCSEKKPDVVVQVVILAEDADIQEKLE 420
G L TG V+ VI+A DI +
Sbjct: 513 GVLTHRNKDGTG------------------VR-VIVAGTLDINPDDD 540
Score = 36.2 bits (83), Expect = 0.079
Identities = 33/213 (15%), Positives = 74/213 (34%), Gaps = 60/213 (28%)
Query: 1 M--VRSRDKEALVSVLTDSLINLVPAQTHLRTNVDTRLGFFIGRYSCV-----KLMRGLL 53
M + + +E + + N +HL + G + V + + GL
Sbjct: 338 MLSISNLTQEQVQDYVNK--TN-----SHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLN 390
Query: 54 MAMMQQK--HKVEQFKI--TQNPLDALH------AKYHS-----ATGETVVGDTEWGHLQ 98
+ + + K ++Q +I ++ L + + +HS A+ + + D ++
Sbjct: 391 LTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPAS-DLINKDLVKNNVS 449
Query: 99 IDAISLYLLILAQMTASGLQIVFCLDEVAFIQNLVFYIESAYCIPDYGIWERGDKSNHGL 158
+A + + + S L+++ + + +V + +P WE
Sbjct: 450 FNAKDIQIPVYDTFDGSDLRVL----SGSISERIV---DCIIRLPVK--WET-------T 493
Query: 159 PELNASSIGMAKAALEAMNELDLFGARGGPSSV 191
+ A+ I LD FG GG S +
Sbjct: 494 TQFKATHI------------LD-FG-PGGASGL 512
Score = 33.1 bits (75), Expect = 0.70
Identities = 29/207 (14%), Positives = 61/207 (29%), Gaps = 63/207 (30%)
Query: 812 DGALNRVPRDFYIRVWNVLEKCQGLLLEGRLLPHGLTQEMTSGELKFALAVETVLNCIPQ 871
G + R+ Y + + E L+ + + + TS F + + +L+
Sbjct: 1677 GGEKGKRIRENYSAM--IFETIVDGKLKTEKIFKEINEHSTS--YTFR-SEKGLLS---A 1728
Query: 872 PEYRQ--LVVEALMVLTLIAERNFV---------STLGDIIVVEN--IVHKANQIFLEDQ 918
++ Q L + + + + S LG E + A+ + +E
Sbjct: 1729 TQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHS-LG-----EYAALASLADVMSIESL 1782
Query: 919 VRVNGDATLCCAKPKDEAYLKSSGGLLCGGAAFICQHLYDSAPGGSFGTMNYLMRAT--A 976
V V + G + + P G NY M A
Sbjct: 1783 VEV----------------VFYRGMT-----------MQVAVPRDELGRSNYGMIAINPG 1815
Query: 977 EMLDCFPRDG------QIDCSSSGGLL 997
+ F ++ ++ +G L+
Sbjct: 1816 RVAASFSQEALQYVVERV-GKRTGWLV 1841
>1lf6_A Glucoamylase; (alpha/alpha) barrel, 6 alpha-helical hairpin
torroid, super beta sandwich, carbohydrase family GH15;
2.10A {Thermoanaerobacteriumthermosaccharolyticum} SCOP:
a.102.1.5 b.30.5.5 PDB: 1lf9_A*
Length = 684
Score = 54.4 bits (130), Expect = 2e-07
Identities = 49/333 (14%), Positives = 94/333 (28%), Gaps = 70/333 (21%)
Query: 69 TQNPLDALHAKYHSATGETVVGDTEWGHLQIDAISLYLLILAQMTASGLQIVFCLDEVAF 128
+ + G W +Q+D + +++ ++ L D +
Sbjct: 371 VVKDNGMIPQNTW------ISGKPYWTGIQLDEQADPIILSYRLKRYDL-----YDSL-- 417
Query: 129 IQNLVFYIESAYCIPDYGIWE-RGDKSNH-------------------GLPELNASSIGM 168
++ L +I WE G S E
Sbjct: 418 VKPLADFIIKIGPKTGQERWEEIGGYSPATMAAEVAGLTCAAYIAEQNKDYESAQKYQEK 477
Query: 169 AKAALEAMNEL----DLFGARGGPSSVIHVLADEAQKCQAVLQSMLPRESSSKELDSGLL 224
A + ++ L + G I L+D + + + +D L
Sbjct: 478 ADNWQKLIDNLTYTENGPLGNGQYYIRIAGLSDPDADFMINIANGGGVYDQKEIVDPSFL 537
Query: 225 SVISFPAFAVDDPLLISETREAIVSKLRGKYGC----KRFLRDGYRTPKEDPNRLHYDPL 280
++ + DDP +++ T + + S ++ R+ DGY P +
Sbjct: 538 ELVRLGVKSADDPKILN-TLKVVDSTIKVDTPKGPSWYRYNHDGYGEPSKT--------- 587
Query: 281 ELRMFENIESEWPLFFCYLILDFCFQGDEARVKEYGEALDKVMVQGEEGMKFVPQLYAVP 340
EL WPL + G +A + + KF + +
Sbjct: 588 ELYHGAGKGRLWPLLTGERGMYEIAAGKDAT-----PYVKAM-------EKFANEGGII- 634
Query: 341 PEHVDEEYKNPGCVERIALGRCPLLWAQSLYIL 373
E V E+ P PL WA + Y++
Sbjct: 635 SEQVWEDTGLP------TDSASPLNWAHAEYVI 661
>1ulv_A Glucodextranase; GH family 15, (alpha-alpha)6-barrel, SLH domain,
hydrolase; HET: ACR; 2.42A {Arthrobacter globiformis}
SCOP: a.102.1.5 b.1.18.2 b.1.9.3 b.30.5.5 PDB: 1ug9_A*
Length = 1020
Score = 50.2 bits (119), Expect = 4e-06
Identities = 57/453 (12%), Positives = 100/453 (22%), Gaps = 73/453 (16%)
Query: 66 FKITQNPLDALHAKYHSATGETVVGDTEWGHLQIDAISLYLLILAQMTASGLQIVFCLDE 125
F Q P V G +Q+D + +L+ Q+ G
Sbjct: 358 FTYQQQPDGHFPQTSR------VDGTIGQNGIQLDETAFPILLANQI---GRTDAGFYRN 408
Query: 126 VAFIQNLVFYIESAYCIPDYGIW-ERGDKSNH-------------------GLPELNASS 165
++ Y+ +A W E G S G A
Sbjct: 409 --ELKPAADYLVAAGPKTPQERWEETGGYSTSTLASQIAALAAAADIAGKNGDAGSAAVY 466
Query: 166 IGMAKAALEAMNEL----DLFGARGGPSSVIHVLADEAQKCQAVLQSMLPRESSSKELDS 221
A + + + G I + + + LD
Sbjct: 467 RATADEWQRSTEKWMFTTNGPVGDGKYYLRISATGNPNDGATRDWGNGAGVHPENAVLDG 526
Query: 222 GLLSVISFPAFAVDDPLLISETREAIVSKLRGKY----GCKRFLRDGYRTPKEDPNRLHY 277
G L + A DP + + + + + R+ DGY +
Sbjct: 527 GFLEFVRLGVKAPADPYVAD-SLAETDASISQETPGGRMWHRYTYDGYGEKADGSPWD-- 583
Query: 278 DPLELRMFENIESEWPLFFCYLILDFCFQGDEARVKEYGEALDKVMVQGEEGMKFVPQLY 337
I WPL G +A L+ + G
Sbjct: 584 -------GTGIGRLWPLLSGERGEYALANGQDAL-----PYLETMHSAANAGYMI----- 626
Query: 338 AVPPEHVDEEYKNPG---CVERIALGRCPLLWAQSLYILGRLLQHGFLATGELDPLNRRL 394
PE V + + + R PL WA + Y+ + R
Sbjct: 627 ---PEQVWDRDEPTSYGHELGRSTGSASPLSWAMAQYVRLAAGVKAGAPVETPQNVAARY 683
Query: 395 CSEKKPDV--------VVQVVILAEDADIQEKLEQHDIYVQTISDVAPIEVQPARVLSHL 446
+ + A ++ +YV V +
Sbjct: 684 AAGTPLSSPELSVTAPEALSTADSATAVVRGTTNAAKVYVSVNGTATEAPVTDGTFSLDV 743
Query: 447 YTYLGRNEKLELTGRKSRDVGILSTSKLYALHD 479
+N+ + + LY
Sbjct: 744 ALTGAKNKVTVAAVAADGGTAVEDRTVLYYGSR 776
>1gai_A Glucoamylase-471; hydrolase, glycosidase, polysaccharide
degradation, glycoPro; HET: MAN NAG BMA GAC; 1.70A
{Aspergillus awamori} SCOP: a.102.1.1 PDB: 1gah_A*
3gly_A* 1dog_A* 1glm_A* 1agm_A* 3eqa_A*
Length = 472
Score = 43.2 bits (101), Expect = 3e-04
Identities = 50/328 (15%), Positives = 85/328 (25%), Gaps = 71/328 (21%)
Query: 93 EWGHLQIDAISLY---LLILAQMTASGLQIVFCLDEV-AFIQNLVFYIESAYCIPDYGIW 148
WG Q D +L ++ Q + V ++N + Y+ + Y +W
Sbjct: 118 SWGRPQRDGPALRATAMIGFGQWLLDNGYTSAATEIVWPLVRNDLSYVAQYWNQTGYDLW 177
Query: 149 E-RGDKSNHGLPELNASSIGMAKAALEAMNELDLFGARGGPSSVIHVLADEAQKCQAVLQ 207
E S +I + AL A G S A + LQ
Sbjct: 178 EEVNGSSFF--------TIAVQHRALVEG--SAFATAVGSSCSWCDSQAPQILC---YLQ 224
Query: 208 S-------MLPRESSSKELDSGLL----------SVISFPAFAVDDPLLISETREAIVSK 250
S + +SS D+ L + F P ++ + +V
Sbjct: 225 SFWTGSYILANFDSSRSGKDTNTLLGSIHTFDPEAGCDDSTFQPCSPRALA-NHKEVVDS 283
Query: 251 LRGKY------------GCKRFLRDGYRTPK----------EDPNRLHYDPLELRMFENI 288
R Y R+ D Y E Y + E
Sbjct: 284 FRSIYTLNDGLSDSEAVAVGRYPEDSYYNGNPWFLCTLAAAEQLYDALYQWDKQGSLEIT 343
Query: 289 ESEWPLFFCYLILDFCFQGDEARVKEYGEALDKVMVQGEEGMKFVPQLYAVP----PEHV 344
+ FF L + Y + V + + V + +A E
Sbjct: 344 DVSLD-FFKALYSGAATGTYSSSSSTYSSIVSAVKTFADGFVSIV-ETHAASNGSLSEQF 401
Query: 345 DEEYKNPGCVERIALGRCPLLWAQSLYI 372
D+ + L L W+ + +
Sbjct: 402 DKSDGDE-------LSARDLTWSYAALL 422
>2vn4_A Glucoamylase; hydrolase, carbohydrate binding, glycoside hydrolase
family 15, amyloglucosidase; HET: MAN NAG BTB; 1.85A
{Hypocrea jecorina} PDB: 2vn7_A*
Length = 599
Score = 37.9 bits (87), Expect = 0.016
Identities = 31/194 (15%), Positives = 53/194 (27%), Gaps = 32/194 (16%)
Query: 93 EWGHLQID-----AISLYLLILAQMTASGLQIVFCLDEVAFIQNLVFYIESAYCIPDYGI 147
WG Q D AI+L + + Q ++N + Y+ + + +
Sbjct: 119 NWGRPQRDGPALRAIALIGYSKWLI-NNNYQSTVSNVIWPIVRNDLNYVAQYWNQTGFDL 177
Query: 148 WE-RGDKSNHGLPELNASSIGMAKAAL-EAMNELDLFGARGGP-SSVIHVLADEAQKC-- 202
WE S ++ AL E G G SSV + Q+
Sbjct: 178 WEEVNGSSFF--------TVANQHRALVEGATLAATLGQSGSAYSSVAPQVLCFLQRFWV 229
Query: 203 --QAVLQSMLPRESSSKELDSGLL----------SVISFPAFAVDDPLLISETREAIVSK 250
+ S + D + F +S + +V
Sbjct: 230 SSGGYVDSNINTNEGRTGKDVNSVLTSIHTFDPNLGCDAGTFQPCSDKALS-NLKVVVDS 288
Query: 251 LRGKYGCKRFLRDG 264
R YG + + G
Sbjct: 289 FRSIYGVNKGIPAG 302
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.9 bits (79), Expect = 0.047
Identities = 15/47 (31%), Positives = 17/47 (36%), Gaps = 20/47 (42%)
Query: 454 EKLELTGRKSRDVGILSTS-KLYALHDRIFAFTPQTCIDDFLAANAS 499
EK L +K L S KLYA D P LA A+
Sbjct: 18 EKQAL--KK------LQASLKLYA-DDS----APA------LAIKAT 45
Score = 33.8 bits (76), Expect = 0.11
Identities = 14/48 (29%), Positives = 17/48 (35%), Gaps = 27/48 (56%)
Query: 933 KDEAYLKSSGGLLCGGAAFICQHLY--DSAPGGSFGTMNYL-MRATAE 977
K +A LK LY DSAP L ++AT E
Sbjct: 24 KLQASLK----------------LYADDSAPA--------LAIKATME 47
Score = 31.8 bits (71), Expect = 0.59
Identities = 10/25 (40%), Positives = 12/25 (48%), Gaps = 11/25 (44%)
Query: 1008 LY--DSAPGGSFGTMNYL-MRATAE 1029
LY DSAP L ++AT E
Sbjct: 31 LYADDSAPA--------LAIKATME 47
Score = 30.7 bits (68), Expect = 1.4
Identities = 11/42 (26%), Positives = 15/42 (35%), Gaps = 22/42 (52%)
Query: 200 QKCQAV--LQSML----PRESSSKELDSGLLSVISFPAFAVD 235
+K QA+ LQ+ L DS PA A+
Sbjct: 18 EK-QALKKLQASLKLYAD--------DSA-------PALAIK 43
>2fba_A Glucoamylase Glu1; (alpha-alpha)6 barrel, TRIS, hydrolase; 1.10A
{Saccharomycopsis fibuligera} SCOP: a.102.1.1 PDB:
1ayx_A* 2f6d_A
Length = 492
Score = 32.5 bits (73), Expect = 0.73
Identities = 23/182 (12%), Positives = 54/182 (29%), Gaps = 49/182 (26%)
Query: 128 FIQNLVFYIESAYCIPDYGIWE-RGDKSNHGLPELNASSIGMAKAALEAMNELDLFGARG 186
I+ + Y+ + + +WE + +S+ KA A++
Sbjct: 189 IIKPDLEYVIGYWDSTGFDLWEENQGRHFF-------TSLVQQKALAYAVD----IAKSF 237
Query: 187 GPSSVIHVLADEAQKCQAVLQSM-----------------LPRESSSKELD-SGLLSVI- 227
+ L+ A ++ L L +++S + LD + + +
Sbjct: 238 DDGDFANTLSSTASTLESYLSGSDGGFVNTDVNHIVENPDLLQQNSRQGLDSATYIGPLL 297
Query: 228 -------SFPAFAVDDPLLISETREAIVSKLRGKY----------GCKRFLRDGYRTPKE 270
S F VD+ ++ + ++ + +Y R+ D Y
Sbjct: 298 THDIGESSSTPFDVDNEYVLQ-SYYLLLEDNKDRYSVNSAYSAGAAIGRYPEDVYNGDGS 356
Query: 271 DP 272
Sbjct: 357 SE 358
>2ws9_1 P1; 3.00A {Equine rhinitis a virus} PDB: 2wff_1 2xbo_1*
Length = 246
Score = 31.7 bits (71), Expect = 1.0
Identities = 10/64 (15%), Positives = 21/64 (32%), Gaps = 6/64 (9%)
Query: 25 QTHLRTNVDTR----LGFFIGRYSCVKLMRGLLMAMMQQKHKVEQFKITQNPLDALHAKY 80
H + VD + F + R+ V+ + + H ++ F T
Sbjct: 15 PRHALSPVDMHVHTDVSFLLDRFFDVETLELSNLTGSPATHVLDPFGSTAQLA--WARLL 72
Query: 81 HSAT 84
++ T
Sbjct: 73 NTCT 76
>2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate,
aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes
faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A*
Length = 546
Score = 32.1 bits (73), Expect = 1.2
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 730 EHLLNLSPFEMKNLLHHILSGK-EFAISSVGRGN 762
+ L LSPFE+K+ L I S + + GRGN
Sbjct: 6 QSLAKLSPFELKDELIKIASSDGNRLMLNAGRGN 39
>2r8u_A Microtubule-associated protein RP/EB family member 1; cytoskeleton,
acetylation, cell cycle, cell division, cytoplasm,
mitosis, phosphorylation; 1.35A {Homo sapiens} SCOP:
a.40.1.1 PDB: 1vka_A 1txq_B 1wu9_A 2hkq_A 2hl5_A 3tq7_A
3gjo_A 1yib_A 1yig_A
Length = 268
Score = 31.4 bits (70), Expect = 1.5
Identities = 21/120 (17%), Positives = 38/120 (31%), Gaps = 9/120 (7%)
Query: 487 QTCIDDFLAANASSSNSSQLQTPKGRTPSPETGETPPLWNMGATSVTPRTRVNSEAHYAD 546
+T + L A A + L + P + + + R N D
Sbjct: 134 ETAVAPSLVAPALNKPKKPLTSSSAAPQRPISTQRT---AAAPKAGPGVVRKNPGVGNGD 190
Query: 547 TEVEELLTMLRE----SECLEEQGDILQYLVDTQGLNYDTGMMEEGQAVTVKDLLKILYE 602
E EL+ + E LE++ D Y + + E ++ ++ ILY
Sbjct: 191 DEAAELMQQVNVLKLTVEDLEKERD--FYFGKLRNIELICQENEGENDPVLQRIVDILYA 248
>3v68_A PF2050 protein, putative uncharacterized protein; DUF2666, double
stranded DNA, DNA binding protein; 1.56A {Pyrococcus
furiosus}
Length = 252
Score = 31.2 bits (70), Expect = 1.6
Identities = 19/97 (19%), Positives = 40/97 (41%), Gaps = 5/97 (5%)
Query: 568 ILQYLVDTQGLNYDTGMMEEGQAVTVKDLLKILYEKACQQKLWGLVRHTAGMLGKRVEDL 627
I YL + +N G++ ++++ LK L +++ LV L K + ++
Sbjct: 44 IPGYLGEKIDVN---GLLSIKIEGSLEEKLKALISPKVSRQIGRLVMEDDKKLKKLLVEV 100
Query: 628 AKAVTDLLVRQKQVTVGMP--PANEHTITAPLPENEL 662
AKAV + + ++ + P I E+ +
Sbjct: 101 AKAVLTREILKNELPIEFPGGKIEGLKIQPRYEEDHI 137
>1ev1_1 Echovirus 1; viral coat protein, capsid, picornavirus, icosahedral
virus; HET: MYR PLM; 3.55A {Human echovirus 1} SCOP:
b.121.4.1
Length = 281
Score = 30.5 bits (68), Expect = 2.9
Identities = 9/59 (15%), Positives = 19/59 (32%), Gaps = 1/59 (1%)
Query: 26 THLRTNVDTRLGFFIGRYSCVKLMRGLLMAMMQQKHKVEQFKITQNPLDALHAKYHSAT 84
+ ++ + F+ R +CV + + + IT + L K T
Sbjct: 54 INNHVRSESTIENFLARSACV-FYLEYKTGTKEDSNSFNNWVITTRRVAQLRRKLEMFT 111
>1frr_A Ferredoxin I; electron transfer(iron-sulfur protein); 1.80A
{Equisetum arvense} SCOP: d.15.4.1
Length = 95
Score = 28.0 bits (63), Expect = 4.7
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 902 VVENIVHKANQIFLEDQVRVNGDATLCCAKPK 933
VV V ++ FL+D G C A P+
Sbjct: 50 VVSGSVDESEGSFLDDGQMEEGFVLTCIAIPE 81
>1frd_A Heterocyst [2Fe-2S] ferredoxin; electron transport; 1.70A {Nostoc
SP} SCOP: d.15.4.1
Length = 98
Score = 27.7 bits (62), Expect = 6.1
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 902 VVENIVHKANQIFLEDQVRVNGDATLCCAKPK 933
VVE V +++QIFL+D+ G A LC P+
Sbjct: 53 VVEGEVDQSDQIFLDDEQMGKGFALLCVTYPR 84
>3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint
center for structural genomics, JCSG, prote structure
initiative; HET: LLP; 2.15A {Lactobacillus acidophilus
ncfm}
Length = 533
Score = 29.4 bits (66), Expect = 6.6
Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Query: 730 EHLLNLSPFEMKNLLHHILSGKEFAIS--SVGRGN 762
+ L L FE+ + + E + + GRGN
Sbjct: 8 KKLEALGAFEISRKMLALAQKNEKSNIFLNAGRGN 42
>1czp_A Ferredoxin I; [2Fe-2S] protein, crystal reduced with dithionite,
electron; 1.17A {Nostoc SP} SCOP: d.15.4.1 PDB: 1ewy_C*
1fxa_A 1qt9_A 1qog_A 1j7c_A 1j7b_A 1qof_A 1qob_A 1j7a_A
1qoa_A 1rfk_A 3p63_A 4fxc_A 3ab5_A 1roe_A 2cjn_A 2cjo_A
1off_A 1dox_A 1doy_A ...
Length = 98
Score = 27.3 bits (61), Expect = 9.2
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 902 VVENIVHKANQIFLEDQVRVNGDATLCCAKPK 933
+V V +++Q FL+D G C A P
Sbjct: 53 LVSGTVDQSDQSFLDDDQIEAGYVLTCVAYPT 84
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.137 0.405
Gapped
Lambda K H
0.267 0.0530 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 15,982,567
Number of extensions: 1006394
Number of successful extensions: 1902
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1884
Number of HSP's successfully gapped: 34
Length of query: 1045
Length of database: 6,701,793
Length adjustment: 103
Effective length of query: 942
Effective length of database: 3,825,930
Effective search space: 3604026060
Effective search space used: 3604026060
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.1 bits)