RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12312
(1045 letters)
>d1ulva1 a.102.1.5 (A:274-686) Glucodextranase, domain A
{Arthrobacter globiformis [TaxId: 1665]}
Length = 413
Score = 60.6 bits (146), Expect = 4e-10
Identities = 44/343 (12%), Positives = 79/343 (23%), Gaps = 58/343 (16%)
Query: 66 FKITQNPLDALHAKYHSATGETVVGDTEWGHLQIDAISLYLLILAQMTASGLQIVFCLDE 125
F Q P V G +Q+D + +L+ Q+ +
Sbjct: 85 FTYQQQPDGHFPQTSR------VDGTIGQNGIQLDETAFPILLANQIGRTDAGFYR---- 134
Query: 126 VAFIQNLVFYIESAYCIPDYGIWERGDKSN--------------------HGLPELNASS 165
++ Y+ +A WE + +G A
Sbjct: 135 -NELKPAADYLVAAGPKTPQERWEETGGYSTSTLASQIAALAAAADIAGKNGDAGSAAVY 193
Query: 166 IGMAKAALEAMNEL----DLFGARGGPSSVIHVLADEAQKCQAVLQSMLPRESSSKELDS 221
A + + + G I + + + LD
Sbjct: 194 RATADEWQRSTEKWMFTTNGPVGDGKYYLRISATGNPNDGATRDWGNGAGVHPENAVLDG 253
Query: 222 GLLSVISFPAFAVDDPLLISETREAIVSKLRGKYGCKRFLRDGYRTPKEDPNRLHYDPLE 281
G L + A DP + + + + +
Sbjct: 254 GFLEFVRLGVKAPADPYVAD-SLAETDASISQETP-----GGRMWHRYTYDGYGEKADGS 307
Query: 282 LRMFENIESEWPLFFCYLILDFCFQGDEARVKEYGEALDKVMVQGEEGMKFVPQLYAVPP 341
I WPL G +A L+ + G P
Sbjct: 308 PWDGTGIGRLWPLLSGERGEYALANGQDAL-----PYLETMHSAANAGYMI--------P 354
Query: 342 EHVDEEYKNP---GCVERIALGRCPLLWAQSLYI-LGRLLQHG 380
E V + + + R PL WA + Y+ L ++ G
Sbjct: 355 EQVWDRDEPTSYGHELGRSTGSASPLSWAMAQYVRLAAGVKAG 397
>d1lf6a1 a.102.1.5 (A:288-684) Bacterial glucoamylase, C-terminal
domain {Thermoanaerobacterium thermosaccharolyticum
[TaxId: 1517]}
Length = 397
Score = 55.2 bits (132), Expect = 2e-08
Identities = 42/344 (12%), Positives = 88/344 (25%), Gaps = 86/344 (25%)
Query: 66 FKITQNPLDALHAKYHSATGETVVGDTEWGHLQIDAISLYLLILAQMTASGLQIVFCLDE 125
+ + G W +Q+D + +++ ++ L
Sbjct: 81 LAKVVKDNGMIPQNTW------ISGKPYWTGIQLDEQADPIILSYRLKRYDL-------Y 127
Query: 126 VAFIQNLVFYIESAYCIPDYGIWERGDKSNHGLPELNASSIGMAKAALEAMNELDLFGAR 185
+ ++ L +I WE + +++ A L +
Sbjct: 128 DSLVKPLADFIIKIGPKTGQERWEEIGGYSP-------ATMAAEVAGLTCAAYIAEQNKD 180
Query: 186 GGPSSVIHVLADE----------AQKCQAVLQSMLPRESS-------------------- 215
+ AD + R +
Sbjct: 181 YESAQKYQEKADNWQKLIDNLTYTENGPLGNGQYYIRIAGLSDPDADFMINIANGGGVYD 240
Query: 216 -SKELDSGLLSVISFPAFAVDDPLLISETREAIVSKLRGKYGC----KRFLRDGYRTPKE 270
+ +D L ++ + DDP +++ T + + S ++ R+ DGY P +
Sbjct: 241 QKEIVDPSFLELVRLGVKSADDPKILN-TLKVVDSTIKVDTPKGPSWYRYNHDGYGEPSK 299
Query: 271 DPNRLHYDPLELRMFENIESEWPLFFCYLILDFCFQGDEARVKEYGEALDKVMVQGEEGM 330
WPL + G +A + +
Sbjct: 300 TELYHGAGK---------GRLWPLLTGERGMYEIAAGKDAT-----PYVKAM-------E 338
Query: 331 KFVPQLYAVPPEHVDEEYKNPGCVERIALGRC-PLLWAQSLYIL 373
KF + + E V E+ P PL WA + Y++
Sbjct: 339 KFANEGGII-SEQVWEDTGLP-------TDSASPLNWAHAEYVI 374
>d1gaia_ a.102.1.1 (A:) Glucoamylase {Aspergillus awamori, variant
x100 [TaxId: 105351]}
Length = 472
Score = 42.4 bits (99), Expect = 2e-04
Identities = 50/330 (15%), Positives = 86/330 (26%), Gaps = 69/330 (20%)
Query: 90 GDTEWGHLQIDAISLY---LLILAQMTASGLQIVFCLDEV-AFIQNLVFYIESAYCIPDY 145
WG Q D +L ++ Q + V ++N + Y+ + Y
Sbjct: 115 YTGSWGRPQRDGPALRATAMIGFGQWLLDNGYTSAATEIVWPLVRNDLSYVAQYWNQTGY 174
Query: 146 GIWERGDKSNHGLPELNASSIGMAKAALEAMNELDLFGARGGPSSVIHVLADEAQKCQAV 205
+WE + S+ +I + AL A G S A +
Sbjct: 175 DLWEEVNGSSF-------FTIAVQHRALVEG--SAFATAVGSSCSWCDSQAPQI---LCY 222
Query: 206 LQSML-------PRESSSKELDSGLL----------SVISFPAFAVDDPLLISETREAIV 248
LQS +SS D+ L + F P ++ + +V
Sbjct: 223 LQSFWTGSYILANFDSSRSGKDTNTLLGSIHTFDPEAGCDDSTFQPCSPRALA-NHKEVV 281
Query: 249 SKLRGKY------------GCKRFLRDGYR----------TPKEDPNRLHYDPLELRMFE 286
R Y R+ D Y E Y + E
Sbjct: 282 DSFRSIYTLNDGLSDSEAVAVGRYPEDSYYNGNPWFLCTLAAAEQLYDALYQWDKQGSLE 341
Query: 287 NIESEWPLFFCYLILDFCFQGDEARVKEYGEALDKVMVQGEEGMKFVPQLYAVP----PE 342
+ FF L + Y + V + + V + +A E
Sbjct: 342 ITDVSLD-FFKALYSGAATGTYSSSSSTYSSIVSAVKTFADGFVSIV-ETHAASNGSLSE 399
Query: 343 HVDEEYKNPGCVERIALGRCPLLWAQSLYI 372
D+ + L L W+ + +
Sbjct: 400 QFDKSDGDE-------LSARDLTWSYAALL 422
>d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 30.1 bits (67), Expect = 0.29
Identities = 12/79 (15%), Positives = 23/79 (29%), Gaps = 16/79 (20%)
Query: 128 FIQNLVFYIESAYC---IPDYGIWERGDKSNHGLPELNASSIGMAKAALEAMNELDLFG- 183
++NL + DY + N + + A+ A++ ++ G
Sbjct: 9 LVKNLPQDSNCQEVHDLLKDYDLKYCYVDRNKRTAFVTLLNGEQAQNAIQMFHQYSFRGK 68
Query: 184 ------------ARGGPSS 190
GPSS
Sbjct: 69 DLIVQLQPTDALLCSGPSS 87
>d1sfea1 a.4.2.1 (A:93-176) Ada DNA repair protein {Escherichia coli
[TaxId: 562]}
Length = 84
Score = 27.3 bits (60), Expect = 2.8
Identities = 9/52 (17%), Positives = 15/52 (28%), Gaps = 5/52 (9%)
Query: 821 DFYIRVWNVLEKCQGLLLEGRLLPHGLTQEMTSGELKFALAVETVLNCIPQP 872
F +VW L + G + + G+ K AV +
Sbjct: 3 AFQQQVWQALRT----IPCGETVSYQQ-LANAIGKPKAVRAVASACAANKLA 49
>d1iyjb4 b.40.4.3 (B:2732-2760,B:2898-2979) OB-fold domains of BRCA2
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 111
Score = 27.5 bits (61), Expect = 3.3
Identities = 16/84 (19%), Positives = 31/84 (36%), Gaps = 3/84 (3%)
Query: 804 QWLRRRRLDGALNRVPRDFYIRVWNVLEKCQGLLLEGRLLPHGLTQEMTSGELKFALAVE 863
QW+ + R+ + + + + +W LL EG+ + S
Sbjct: 28 QWVWKLRV-TSYKKREKSALLSIWRPSSDLPSLLTEGQRYR--IYHLSVSKSKNKFEWPS 84
Query: 864 TVLNCIPQPEYRQLVVEALMVLTL 887
L + +Y+QL V + +L L
Sbjct: 85 IQLTATKRTQYQQLPVSSETLLQL 108
>d1v6ta_ c.6.2.5 (A:) Hypothetical protein PH0986 {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 254
Score = 28.0 bits (62), Expect = 5.1
Identities = 13/64 (20%), Positives = 25/64 (39%)
Query: 77 HAKYHSATGETVVGDTEWGHLQIDAISLYLLILAQMTASGLQIVFCLDEVAFIQNLVFYI 136
H K H A +V + + I+ I + L +T S ++ +E+ +
Sbjct: 107 HVKPHGALYNAMVKEEDLARAVIEGILDFDKDLILVTLSNSRVADIAEEMGLKVAHEVFA 166
Query: 137 ESAY 140
+ AY
Sbjct: 167 DRAY 170
>d2ahob1 a.60.14.1 (B:85-175) Eukaryotic initiation factor 2alpha,
eIF2alpha, domain 2 {Sulfolobus solfataricus [TaxId:
2287]}
Length = 91
Score = 26.6 bits (59), Expect = 5.5
Identities = 6/31 (19%), Positives = 12/31 (38%)
Query: 607 QKLWGLVRHTAGMLGKRVEDLAKAVTDLLVR 637
Q+L ++ + L +D + V L
Sbjct: 17 QRLDKILELVSQKLKLSEKDAWEQVAWKLEA 47
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.137 0.405
Gapped
Lambda K H
0.267 0.0706 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,786,583
Number of extensions: 181080
Number of successful extensions: 457
Number of sequences better than 10.0: 1
Number of HSP's gapped: 455
Number of HSP's successfully gapped: 8
Length of query: 1045
Length of database: 2,407,596
Length adjustment: 95
Effective length of query: 950
Effective length of database: 1,103,246
Effective search space: 1048083700
Effective search space used: 1048083700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.2 bits)