BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12313
(488 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RHW|A Chain A, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab And Ivermectin
pdb|3RHW|B Chain B, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab And Ivermectin
pdb|3RHW|C Chain C, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab And Ivermectin
pdb|3RHW|D Chain D, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab And Ivermectin
pdb|3RHW|E Chain E, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab And Ivermectin
pdb|3RI5|A Chain A, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Picrotoxin
pdb|3RI5|B Chain B, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Picrotoxin
pdb|3RI5|C Chain C, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Picrotoxin
pdb|3RI5|D Chain D, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Picrotoxin
pdb|3RI5|E Chain E, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Picrotoxin
pdb|3RIA|A Chain A, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Iodide.
pdb|3RIA|B Chain B, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Iodide.
pdb|3RIA|C Chain C, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Iodide.
pdb|3RIA|D Chain D, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Iodide.
pdb|3RIA|E Chain E, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Iodide.
pdb|3RIF|A Chain A, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Glutamate.
pdb|3RIF|B Chain B, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Glutamate.
pdb|3RIF|C Chain C, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Glutamate.
pdb|3RIF|D Chain D, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Glutamate.
pdb|3RIF|E Chain E, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Glutamate
Length = 347
Score = 174 bits (442), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 95/284 (33%), Positives = 151/284 (53%), Gaps = 12/284 (4%)
Query: 190 PNHGKGEPTIIKTNMLIRSMGPISEIDMDYSMDCYFRQYWRDSRLSFM----GPINNLSL 245
P G P ++ NML+R++ I ++M+YS R+ W D RLS+ G + + L
Sbjct: 20 PPTDNGGPVVVSVNMLLRTISKIDVVNMEYSAQLTLRESWIDKRLSYGVKGDGQPDFVIL 79
Query: 246 SIKMLEKIWRPDTYILNGKQSYVHTITVPNKLLRINQDGDILYSMRLTIKANCPMSLRNF 305
++ +IW PDT+ N KQ+Y HTI PN L+RI+ DG +LYS+R+++ +CPM L+ +
Sbjct: 80 TVG--HQIWMPDTFFPNEKQAYKHTIDKPNVLIRIHNDGTVLYSVRISLVLSCPMYLQYY 137
Query: 306 PMDTQSCPLILGSYAYPIEKLVYHWTPGKSISFVPGMAIS--QFDFISSPKRNFTFKRRE 363
PMD Q C + L SYAY + + Y W + G++ S F ++ T
Sbjct: 138 PMDVQQCSIDLASYAYTTKDIEYLWKEHSPLQLKVGLSSSLPSFQLTNTSTTYCTSVTNT 197
Query: 364 GEFSLLQVNFNLKRHRGYFVIQVYVPCVLIVVLSWVSFWIHREATSDRXXXXXXXXXXXX 423
G +S L+ LKR ++++Q+Y+P ++V++SWVSFW R A R
Sbjct: 198 GIYSCLRTTIQLKREFSFYLLQLYIPSCMLVIVSWVSFWFDRTAIPARVTLGVTTLLTMT 257
Query: 424 XXXXDSRTDLPKVRYATALDWFL--LMSFFYCIATILEFAAVHY 465
+ LP V Y A+D ++ M+F +C +LEFA V++
Sbjct: 258 AQSAGINSQLPPVSYIKAIDVWIGACMTFIFC--ALLEFALVNH 299
>pdb|3UQ5|A Chain A, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240a F247l (L9a
F16l) In The Presence Of 10 Mm Cysteamine
pdb|3UQ5|B Chain B, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240a F247l (L9a
F16l) In The Presence Of 10 Mm Cysteamine
pdb|3UQ5|C Chain C, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240a F247l (L9a
F16l) In The Presence Of 10 Mm Cysteamine
pdb|3UQ5|D Chain D, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240a F247l (L9a
F16l) In The Presence Of 10 Mm Cysteamine
pdb|3UQ5|E Chain E, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240a F247l (L9a
F16l) In The Presence Of 10 Mm Cysteamine
pdb|3UQ5|F Chain F, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240a F247l (L9a
F16l) In The Presence Of 10 Mm Cysteamine
pdb|3UQ5|G Chain G, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240a F247l (L9a
F16l) In The Presence Of 10 Mm Cysteamine
pdb|3UQ5|H Chain H, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240a F247l (L9a
F16l) In The Presence Of 10 Mm Cysteamine
pdb|3UQ5|I Chain I, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240a F247l (L9a
F16l) In The Presence Of 10 Mm Cysteamine
pdb|3UQ5|J Chain J, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240a F247l (L9a
F16l) In The Presence Of 10 Mm Cysteamine
Length = 324
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 67/325 (20%), Positives = 123/325 (37%), Gaps = 46/325 (14%)
Query: 186 SSEPPNHGKGEPTIIKTNMLIRSMGPISEIDMDYSMDCYFRQYWRDSRLSFMGP----IN 241
S+ N P + ++ I + ++ ++ Y +D Y W G +
Sbjct: 2 SAPADNAADARPVDVSVSIFINKIYGVNTLEQTYKVDGYIVAQWTGKPRKTPGDKPLIVE 61
Query: 242 NLSLSIKMLEKIWRPDTYILNGKQSYVHTITVPNKLLRINQDGDILYSMRLTIKANCPMS 301
N + + +W P +N V + NK L + DG ++Y+ R + M
Sbjct: 62 NTQIERWINNGLWVPALEFIN----VVGSPDTGNKRLMLFPDGRVIYNARFLGSFSNDMD 117
Query: 302 LRNFPMDTQSCPLILGSYAYPIEKLVYH-----------------WTPGKSISFVPGMAI 344
R FP D Q L L ++Y ++L + W GK+ + + +
Sbjct: 118 FRLFPFDRQQFVLELEPFSYNNQQLRFSDIQVYTENIDNEEIDEWWIRGKASTHISDI-- 175
Query: 345 SQFDFISSPKRNFTFKRREGEFSLLQVNFNLKRHRGYFVIQVYVPCVLIVVLSWVSFWIH 404
++D +SS + N + EFS + V + R+ Y++ +P LI+ SW FW+
Sbjct: 176 -RYDHLSSVQPN------QNEFSRITVRIDAVRNPSYYLWSFILPLGLIIAASWSVFWL- 227
Query: 405 REATSDRXXXXXXXXXXXXXXXXDSRTDLPKVRYATALDWFLLMSFFYCIATILEFAAVH 464
E+ S+R + LP++ Y T +D ++ + A IL H
Sbjct: 228 -ESFSERLQTSFTLMATVVAYALYTSNILPRLPYTTVIDQMIIAGYGSIFAAILLIIFAH 286
Query: 465 Y----------FTKLCYPGYPSGFI 479
+ + C +P GF+
Sbjct: 287 HRQANGVEDDLLIQRCRLAFPLGFL 311
>pdb|3UQ7|A Chain A, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240s F247l (L9s
F16l) In Presence Of 10 Mm Cysteamine
pdb|3UQ7|B Chain B, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240s F247l (L9s
F16l) In Presence Of 10 Mm Cysteamine
pdb|3UQ7|C Chain C, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240s F247l (L9s
F16l) In Presence Of 10 Mm Cysteamine
pdb|3UQ7|D Chain D, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240s F247l (L9s
F16l) In Presence Of 10 Mm Cysteamine
pdb|3UQ7|E Chain E, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240s F247l (L9s
F16l) In Presence Of 10 Mm Cysteamine
pdb|3UQ7|F Chain F, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240s F247l (L9s
F16l) In Presence Of 10 Mm Cysteamine
pdb|3UQ7|G Chain G, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240s F247l (L9s
F16l) In Presence Of 10 Mm Cysteamine
pdb|3UQ7|H Chain H, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240s F247l (L9s
F16l) In Presence Of 10 Mm Cysteamine
pdb|3UQ7|I Chain I, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240s F247l (L9s
F16l) In Presence Of 10 Mm Cysteamine
pdb|3UQ7|J Chain J, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240s F247l (L9s
F16l) In Presence Of 10 Mm Cysteamine
Length = 324
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 67/325 (20%), Positives = 123/325 (37%), Gaps = 46/325 (14%)
Query: 186 SSEPPNHGKGEPTIIKTNMLIRSMGPISEIDMDYSMDCYFRQYWRDSRLSFMGP----IN 241
S+ N P + ++ I + ++ ++ Y +D Y W G +
Sbjct: 2 SAPADNAADARPVDVSVSIFINKIYGVNTLEQTYKVDGYIVAQWTGKPRKTPGDKPLIVE 61
Query: 242 NLSLSIKMLEKIWRPDTYILNGKQSYVHTITVPNKLLRINQDGDILYSMRLTIKANCPMS 301
N + + +W P +N V + NK L + DG ++Y+ R + M
Sbjct: 62 NTQIERWINNGLWVPALEFIN----VVGSPDTGNKRLMLFPDGRVIYNARFLGSFSNDMD 117
Query: 302 LRNFPMDTQSCPLILGSYAYPIEKLVYH-----------------WTPGKSISFVPGMAI 344
R FP D Q L L ++Y ++L + W GK+ + + +
Sbjct: 118 FRLFPFDRQQFVLELEPFSYNNQQLRFSDIQVYTENIDNEEIDEWWIRGKASTHISDI-- 175
Query: 345 SQFDFISSPKRNFTFKRREGEFSLLQVNFNLKRHRGYFVIQVYVPCVLIVVLSWVSFWIH 404
++D +SS + N + EFS + V + R+ Y++ +P LI+ SW FW+
Sbjct: 176 -RYDHLSSVQPN------QNEFSRITVRIDAVRNPSYYLWSFILPLGLIIAASWSVFWL- 227
Query: 405 REATSDRXXXXXXXXXXXXXXXXDSRTDLPKVRYATALDWFLLMSFFYCIATILEFAAVH 464
E+ S+R + LP++ Y T +D ++ + A IL H
Sbjct: 228 -ESFSERLQTSFTLMSTVVAYALYTSNILPRLPYTTVIDQMIIAGYGSIFAAILLIIFAH 286
Query: 465 Y----------FTKLCYPGYPSGFI 479
+ + C +P GF+
Sbjct: 287 HRQANGVEDDLLIQRCRLAFPLGFL 311
>pdb|3UQ4|A Chain A, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant F247l (F16l)
pdb|3UQ4|B Chain B, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant F247l (F16l)
pdb|3UQ4|C Chain C, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant F247l (F16l)
pdb|3UQ4|D Chain D, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant F247l (F16l)
pdb|3UQ4|E Chain E, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant F247l (F16l)
pdb|3UQ4|F Chain F, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant F247l (F16l)
pdb|3UQ4|G Chain G, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant F247l (F16l)
pdb|3UQ4|H Chain H, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant F247l (F16l)
pdb|3UQ4|I Chain I, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant F247l (F16l)
pdb|3UQ4|J Chain J, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant F247l (F16l)
Length = 324
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 67/325 (20%), Positives = 123/325 (37%), Gaps = 46/325 (14%)
Query: 186 SSEPPNHGKGEPTIIKTNMLIRSMGPISEIDMDYSMDCYFRQYWRDSRLSFMGP----IN 241
S+ N P + ++ I + ++ ++ Y +D Y W G +
Sbjct: 2 SAPADNAADARPVDVSVSIFINKIYGVNTLEQTYKVDGYIVAQWTGKPRKTPGDKPLIVE 61
Query: 242 NLSLSIKMLEKIWRPDTYILNGKQSYVHTITVPNKLLRINQDGDILYSMRLTIKANCPMS 301
N + + +W P +N V + NK L + DG ++Y+ R + M
Sbjct: 62 NTQIERWINNGLWVPALEFIN----VVGSPDTGNKRLMLFPDGRVIYNARFLGSFSNDMD 117
Query: 302 LRNFPMDTQSCPLILGSYAYPIEKLVYH-----------------WTPGKSISFVPGMAI 344
R FP D Q L L ++Y ++L + W GK+ + + +
Sbjct: 118 FRLFPFDRQQFVLELEPFSYNNQQLRFSDIQVYTENIDNEEIDEWWIRGKASTHISDI-- 175
Query: 345 SQFDFISSPKRNFTFKRREGEFSLLQVNFNLKRHRGYFVIQVYVPCVLIVVLSWVSFWIH 404
++D +SS + N + EFS + V + R+ Y++ +P LI+ SW FW+
Sbjct: 176 -RYDHLSSVQPN------QNEFSRITVRIDAVRNPSYYLWSFILPLGLIIAASWSVFWL- 227
Query: 405 REATSDRXXXXXXXXXXXXXXXXDSRTDLPKVRYATALDWFLLMSFFYCIATILEFAAVH 464
E+ S+R + LP++ Y T +D ++ + A IL H
Sbjct: 228 -ESFSERLQTSFTLMLTVVAYALYTSNILPRLPYTTVIDQMIIAGYGSIFAAILLIIFAH 286
Query: 465 Y----------FTKLCYPGYPSGFI 479
+ + C +P GF+
Sbjct: 287 HRQANGVEDDLLIQRCRLAFPLGFL 311
>pdb|3RQU|A Chain A, Crystal Structure Of A Prokaryotic Pentameric Ligand-Gated
Ion Channel, Elic
pdb|3RQU|B Chain B, Crystal Structure Of A Prokaryotic Pentameric Ligand-Gated
Ion Channel, Elic
pdb|3RQU|C Chain C, Crystal Structure Of A Prokaryotic Pentameric Ligand-Gated
Ion Channel, Elic
pdb|3RQU|D Chain D, Crystal Structure Of A Prokaryotic Pentameric Ligand-Gated
Ion Channel, Elic
pdb|3RQU|E Chain E, Crystal Structure Of A Prokaryotic Pentameric Ligand-Gated
Ion Channel, Elic
pdb|3RQU|F Chain F, Crystal Structure Of A Prokaryotic Pentameric Ligand-Gated
Ion Channel, Elic
pdb|3RQU|G Chain G, Crystal Structure Of A Prokaryotic Pentameric Ligand-Gated
Ion Channel, Elic
pdb|3RQU|H Chain H, Crystal Structure Of A Prokaryotic Pentameric Ligand-Gated
Ion Channel, Elic
pdb|3RQU|I Chain I, Crystal Structure Of A Prokaryotic Pentameric Ligand-Gated
Ion Channel, Elic
pdb|3RQU|J Chain J, Crystal Structure Of A Prokaryotic Pentameric Ligand-Gated
Ion Channel, Elic
pdb|3RQW|A Chain A, Crystal Structure Of Acetylcholine Bound To A Prokaryotic
Pentameric Ligand-Gated Ion Channel, Elic
pdb|3RQW|B Chain B, Crystal Structure Of Acetylcholine Bound To A Prokaryotic
Pentameric Ligand-Gated Ion Channel, Elic
pdb|3RQW|C Chain C, Crystal Structure Of Acetylcholine Bound To A Prokaryotic
Pentameric Ligand-Gated Ion Channel, Elic
pdb|3RQW|D Chain D, Crystal Structure Of Acetylcholine Bound To A Prokaryotic
Pentameric Ligand-Gated Ion Channel, Elic
pdb|3RQW|E Chain E, Crystal Structure Of Acetylcholine Bound To A Prokaryotic
Pentameric Ligand-Gated Ion Channel, Elic
pdb|3RQW|F Chain F, Crystal Structure Of Acetylcholine Bound To A Prokaryotic
Pentameric Ligand-Gated Ion Channel, Elic
pdb|3RQW|G Chain G, Crystal Structure Of Acetylcholine Bound To A Prokaryotic
Pentameric Ligand-Gated Ion Channel, Elic
pdb|3RQW|H Chain H, Crystal Structure Of Acetylcholine Bound To A Prokaryotic
Pentameric Ligand-Gated Ion Channel, Elic
pdb|3RQW|I Chain I, Crystal Structure Of Acetylcholine Bound To A Prokaryotic
Pentameric Ligand-Gated Ion Channel, Elic
pdb|3RQW|J Chain J, Crystal Structure Of Acetylcholine Bound To A Prokaryotic
Pentameric Ligand-Gated Ion Channel, Elic
pdb|2YN6|A Chain A, Pentameric Ligand-Gated Ion Channel Elic In Complex With
Barium
pdb|2YN6|B Chain B, Pentameric Ligand-Gated Ion Channel Elic In Complex With
Barium
pdb|2YN6|C Chain C, Pentameric Ligand-Gated Ion Channel Elic In Complex With
Barium
pdb|2YN6|D Chain D, Pentameric Ligand-Gated Ion Channel Elic In Complex With
Barium
pdb|2YN6|E Chain E, Pentameric Ligand-Gated Ion Channel Elic In Complex With
Barium
Length = 322
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 66/320 (20%), Positives = 121/320 (37%), Gaps = 46/320 (14%)
Query: 191 NHGKGEPTIIKTNMLIRSMGPISEIDMDYSMDCYFRQYWRDSRLSFMGP----INNLSLS 246
N P + ++ I + ++ ++ Y +D Y W G + N +
Sbjct: 5 NAADARPVDVSVSIFINKIYGVNTLEQTYKVDGYIVAQWTGKPRKTPGDKPLIVENTQIE 64
Query: 247 IKMLEKIWRPDTYILNGKQSYVHTITVPNKLLRINQDGDILYSMRLTIKANCPMSLRNFP 306
+ +W P +N V + NK L + DG ++Y+ R + M R FP
Sbjct: 65 RWINNGLWVPALEFIN----VVGSPDTGNKRLMLFPDGRVIYNARFLGSFSNDMDFRLFP 120
Query: 307 MDTQSCPLILGSYAYPIEKLVYH-----------------WTPGKSISFVPGMAISQFDF 349
D Q L L ++Y ++L + W GK+ + + + ++D
Sbjct: 121 FDRQQFVLELEPFSYNNQQLRFSDIQVYTENIDNEEIDEWWIRGKASTHISDI---RYDH 177
Query: 350 ISSPKRNFTFKRREGEFSLLQVNFNLKRHRGYFVIQVYVPCVLIVVLSWVSFWIHREATS 409
+SS + N + EFS + V + R+ Y++ +P LI+ SW FW+ E+ S
Sbjct: 178 LSSVQPN------QNEFSRITVRIDAVRNPSYYLWSFILPLGLIIAASWSVFWL--ESFS 229
Query: 410 DRXXXXXXXXXXXXXXXXDSRTDLPKVRYATALDWFLLMSFFYCIATILEFAAVHY---- 465
+R + LP++ Y T +D ++ + A IL H+
Sbjct: 230 ERLQTSFTLMLTVVAYAFYTSNILPRLPYTTVIDQMIIAGYGSIFAAILLIIFAHHRQAN 289
Query: 466 ------FTKLCYPGYPSGFI 479
+ C +P GF+
Sbjct: 290 GVEDDLLIQRCRLAFPLGFL 309
>pdb|4A97|A Chain A, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With
Zopiclone
pdb|4A97|B Chain B, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With
Zopiclone
pdb|4A97|C Chain C, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With
Zopiclone
pdb|4A97|D Chain D, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With
Zopiclone
pdb|4A97|E Chain E, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With
Zopiclone
pdb|4A97|F Chain F, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With
Zopiclone
pdb|4A97|G Chain G, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With
Zopiclone
pdb|4A97|H Chain H, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With
Zopiclone
pdb|4A97|I Chain I, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With
Zopiclone
pdb|4A97|J Chain J, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With
Zopiclone
pdb|4A98|A Chain A, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With
Bromoflurazepam
pdb|4A98|B Chain B, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With
Bromoflurazepam
pdb|4A98|C Chain C, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With
Bromoflurazepam
pdb|4A98|D Chain D, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With
Bromoflurazepam
pdb|4A98|E Chain E, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With
Bromoflurazepam
pdb|4A98|F Chain F, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With
Bromoflurazepam
pdb|4A98|G Chain G, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With
Bromoflurazepam
pdb|4A98|H Chain H, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With
Bromoflurazepam
pdb|4A98|I Chain I, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With
Bromoflurazepam
pdb|4A98|J Chain J, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With
Bromoflurazepam
pdb|2YOE|A Chain A, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With Gaba
And Flurazepam
pdb|2YOE|B Chain B, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With Gaba
And Flurazepam
pdb|2YOE|C Chain C, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With Gaba
And Flurazepam
pdb|2YOE|D Chain D, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With Gaba
And Flurazepam
pdb|2YOE|E Chain E, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With Gaba
And Flurazepam
pdb|2YOE|F Chain F, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With Gaba
And Flurazepam
pdb|2YOE|G Chain G, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With Gaba
And Flurazepam
pdb|2YOE|H Chain H, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With Gaba
And Flurazepam
pdb|2YOE|I Chain I, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With Gaba
And Flurazepam
pdb|2YOE|J Chain J, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With Gaba
And Flurazepam
pdb|3ZKR|A Chain A, X-ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (elic) In Complex With
Bromoform
pdb|3ZKR|B Chain B, X-ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (elic) In Complex With
Bromoform
pdb|3ZKR|C Chain C, X-ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (elic) In Complex With
Bromoform
pdb|3ZKR|D Chain D, X-ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (elic) In Complex With
Bromoform
pdb|3ZKR|E Chain E, X-ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (elic) In Complex With
Bromoform
pdb|3ZKR|F Chain F, X-ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (elic) In Complex With
Bromoform
pdb|3ZKR|G Chain G, X-ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (elic) In Complex With
Bromoform
pdb|3ZKR|H Chain H, X-ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (elic) In Complex With
Bromoform
pdb|3ZKR|I Chain I, X-ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (elic) In Complex With
Bromoform
pdb|3ZKR|J Chain J, X-ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (elic) In Complex With
Bromoform
Length = 307
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 65/314 (20%), Positives = 120/314 (38%), Gaps = 46/314 (14%)
Query: 197 PTIIKTNMLIRSMGPISEIDMDYSMDCYFRQYWRDSRLSFMGP----INNLSLSIKMLEK 252
P + ++ I + ++ ++ Y +D Y W G + N + +
Sbjct: 1 PVDVSVSIFINKIYGVNTLEQTYKVDGYIVAQWTGKPRKTPGDKPLIVENTQIERWINNG 60
Query: 253 IWRPDTYILNGKQSYVHTITVPNKLLRINQDGDILYSMRLTIKANCPMSLRNFPMDTQSC 312
+W P +N V + NK L + DG ++Y+ R + M R FP D Q
Sbjct: 61 LWVPALEFIN----VVGSPDTGNKRLMLFPDGRVIYNARFLGSFSNDMDFRLFPFDRQQF 116
Query: 313 PLILGSYAYPIEKLVYH-----------------WTPGKSISFVPGMAISQFDFISSPKR 355
L L ++Y ++L + W GK+ + + + ++D +SS +
Sbjct: 117 VLELEPFSYNNQQLRFSDIQVYTENIDNEEIDEWWIRGKASTHISDI---RYDHLSSVQP 173
Query: 356 NFTFKRREGEFSLLQVNFNLKRHRGYFVIQVYVPCVLIVVLSWVSFWIHREATSDRXXXX 415
N + EFS + V + R+ Y++ +P LI+ SW FW+ E+ S+R
Sbjct: 174 N------QNEFSRITVRIDAVRNPSYYLWSFILPLGLIIAASWSVFWL--ESFSERLQTS 225
Query: 416 XXXXXXXXXXXXDSRTDLPKVRYATALDWFLLMSFFYCIATILEFAAVHY---------- 465
+ LP++ Y T +D ++ + A IL H+
Sbjct: 226 FTLMLTVVAYAFYTSNILPRLPYTTVIDQMIIAGYGSIFAAILLIIFAHHRQANGVEDDL 285
Query: 466 FTKLCYPGYPSGFI 479
+ C +P GF+
Sbjct: 286 LIQRCRLAFPLGFL 299
>pdb|3EI0|A Chain A, Structure Of The E221a Mutant Of The Gloebacter Violaceus
Pentameric Ligand Gated Ion Channnel (Glic)
pdb|3EI0|B Chain B, Structure Of The E221a Mutant Of The Gloebacter Violaceus
Pentameric Ligand Gated Ion Channnel (Glic)
pdb|3EI0|C Chain C, Structure Of The E221a Mutant Of The Gloebacter Violaceus
Pentameric Ligand Gated Ion Channnel (Glic)
pdb|3EI0|D Chain D, Structure Of The E221a Mutant Of The Gloebacter Violaceus
Pentameric Ligand Gated Ion Channnel (Glic)
pdb|3EI0|E Chain E, Structure Of The E221a Mutant Of The Gloebacter Violaceus
Pentameric Ligand Gated Ion Channnel (Glic)
Length = 317
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 62/297 (20%), Positives = 118/297 (39%), Gaps = 29/297 (9%)
Query: 189 PPNHGKGEPTIIKTNMLIRSMGPISEIDMDYSMDCYFRQYWRDSRLSFMGPINNLSLSIK 248
PP EP + T + + + + + ++ + W+D RL+F + + +
Sbjct: 7 PPPPIADEPLTVNTGIYLIECYSLDDKAETFKVNAFLSLSWKDRRLAFDPVRSGVRVKTY 66
Query: 249 MLEKIWRPDTYILNGKQSYVHTITVPNKLLRINQDGDILYSMRLTIKANCPMSLRNFPMD 308
E IW P+ +N + + + + ++ DG + Y R + + P+ R +P D
Sbjct: 67 EPEAIWIPEIRFVNVENARDADVVD----ISVSPDGTVQYLERFSARVLSPLDFRRYPFD 122
Query: 309 TQSCP--LILGSY-------AYPIEKLVYHWTPGKSIS-FVPGMAISQFDFISSPKRNFT 358
+Q+ LI+ S A +EK+ GK+ F+ G I F + P NF
Sbjct: 123 SQTLHIYLIVRSVDTRNIVLAVDLEKV------GKNDDVFLTGWDIESFTAVVKPA-NFA 175
Query: 359 FKRREGEFSLLQVNFNLKRHRGYF--VIQVYVPCVLIVVLSWVSFWIHREATSDRXXXXX 416
+ R ++++ L+ R YF + + +P + I+ +SW +FW A +
Sbjct: 176 LEDRLES----KLDYQLRISRQYFSYIPNIILPMLFILFISWTAFWSTSYAANVTLVVST 231
Query: 417 XXXXXXXXXXXDSRTDLPKVRYATALDWFLLMSFFYCIATILEFAAVHYFTKLCYPG 473
+ T+LPK Y T + M + + ++E HY P
Sbjct: 232 LIAHIAFNILVE--TNLPKTPYMTYTGAIIFMIYLFYFVAVIEVTVQHYLKVESQPA 286
>pdb|2YKS|A Chain A, Pentameric Ligand Gated Ion Channel Elic Mutant F246a
pdb|2YKS|B Chain B, Pentameric Ligand Gated Ion Channel Elic Mutant F246a
pdb|2YKS|C Chain C, Pentameric Ligand Gated Ion Channel Elic Mutant F246a
pdb|2YKS|D Chain D, Pentameric Ligand Gated Ion Channel Elic Mutant F246a
pdb|2YKS|E Chain E, Pentameric Ligand Gated Ion Channel Elic Mutant F246a
pdb|2YKS|F Chain F, Pentameric Ligand Gated Ion Channel Elic Mutant F246a
pdb|2YKS|G Chain G, Pentameric Ligand Gated Ion Channel Elic Mutant F246a
pdb|2YKS|H Chain H, Pentameric Ligand Gated Ion Channel Elic Mutant F246a
pdb|2YKS|I Chain I, Pentameric Ligand Gated Ion Channel Elic Mutant F246a
pdb|2YKS|J Chain J, Pentameric Ligand Gated Ion Channel Elic Mutant F246a
Length = 321
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/319 (20%), Positives = 120/319 (37%), Gaps = 45/319 (14%)
Query: 191 NHGKGEPTIIKTNMLIRSMGPISEIDMDYSMDCYFRQYWRDSRLSFMGP----INNLSLS 246
N P + ++ I + ++ ++ Y +D Y W G + N +
Sbjct: 5 NAADARPVDVSVSIFINKIYGVNTLEQTYKVDGYIVAQWTGKPRKTPGDKPLIVENTQIE 64
Query: 247 IKMLEKIWRPDTYILNGKQSYVHTITVPNKLLRINQDGDILYSMRLTIKANCPMSLRNFP 306
+ +W P +N V + NK L + DG ++Y+ R + M R FP
Sbjct: 65 RWINNGLWVPALEFIN----VVGSPDTGNKRLMLFPDGRVIYNARFLGSFSNDMDFRLFP 120
Query: 307 MDTQSCPLILGSYAYPIEKLVY----------------HWTPGKSISFVPGMAISQFDFI 350
D Q L L ++Y ++L + W K+ + + + ++D +
Sbjct: 121 FDRQQFVLELEPFSYNNQQLRFSDIQVYTENIDNEEIDEWWIRKASTHISDI---RYDHL 177
Query: 351 SSPKRNFTFKRREGEFSLLQVNFNLKRHRGYFVIQVYVPCVLIVVLSWVSFWIHREATSD 410
SS + N + EFS + V + R+ Y++ +P LI+ SW FW+ E+ S+
Sbjct: 178 SSVQPN------QNEFSRITVRIDAVRNPSYYLWSFILPLGLIIAASWSVFWL--ESFSE 229
Query: 411 RXXXXXXXXXXXXXXXXDSRTDLPKVRYATALDWFLLMSFFYCIATILEFAAVHY----- 465
R + LP++ Y T +D ++ + A IL H+
Sbjct: 230 RLQTSFTLMLTVVAYAAYTSNILPRLPYTTVIDQMIIAGYGSIFAAILLIIFAHHRQANG 289
Query: 466 -----FTKLCYPGYPSGFI 479
+ C +P GF+
Sbjct: 290 VEDDLLIQRCRLAFPLGFL 308
>pdb|2VL0|A Chain A, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic)
pdb|2VL0|B Chain B, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic)
pdb|2VL0|C Chain C, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic)
pdb|2VL0|D Chain D, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic)
pdb|2VL0|E Chain E, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic)
pdb|2VL0|F Chain F, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic)
pdb|2VL0|G Chain G, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic)
pdb|2VL0|H Chain H, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic)
pdb|2VL0|I Chain I, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic)
pdb|2VL0|J Chain J, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic)
Length = 321
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 65/319 (20%), Positives = 120/319 (37%), Gaps = 45/319 (14%)
Query: 191 NHGKGEPTIIKTNMLIRSMGPISEIDMDYSMDCYFRQYWRDSRLSFMGP----INNLSLS 246
N P + ++ I + ++ ++ Y +D Y W G + N +
Sbjct: 5 NAADARPVDVSVSIFINKIYGVNTLEQTYKVDGYIVAQWTGKPRKTPGDKPLIVENTQIE 64
Query: 247 IKMLEKIWRPDTYILNGKQSYVHTITVPNKLLRINQDGDILYSMRLTIKANCPMSLRNFP 306
+ +W P +N V + NK L + DG ++Y+ R + M R FP
Sbjct: 65 RWINNGLWVPALEFIN----VVGSPDTGNKRLMLFPDGRVIYNARFLGSFSNDMDFRLFP 120
Query: 307 MDTQSCPLILGSYAYPIEKLVY----------------HWTPGKSISFVPGMAISQFDFI 350
D Q L L ++Y ++L + W K+ + + + ++D +
Sbjct: 121 FDRQQFVLELEPFSYNNQQLRFSDIQVYTENIDNEEIDEWWIRKASTHISDI---RYDHL 177
Query: 351 SSPKRNFTFKRREGEFSLLQVNFNLKRHRGYFVIQVYVPCVLIVVLSWVSFWIHREATSD 410
SS + N + EFS + V + R+ Y++ +P LI+ SW FW+ E+ S+
Sbjct: 178 SSVQPN------QNEFSRITVRIDAVRNPSYYLWSFILPLGLIIAASWSVFWL--ESFSE 229
Query: 411 RXXXXXXXXXXXXXXXXDSRTDLPKVRYATALDWFLLMSFFYCIATILEFAAVHY----- 465
R + LP++ Y T +D ++ + A IL H+
Sbjct: 230 RLQTSFTLMLTVVAYAFYTSNILPRLPYTTVIDQMIIAGYGSIFAAILLIIFAHHRQANG 289
Query: 466 -----FTKLCYPGYPSGFI 479
+ C +P GF+
Sbjct: 290 VEDDLLIQRCRLAFPLGFL 308
>pdb|3EAM|A Chain A, An Open-Pore Structure Of A Bacterial Pentameric Ligand-
Gated Ion Channel
pdb|3EAM|B Chain B, An Open-Pore Structure Of A Bacterial Pentameric Ligand-
Gated Ion Channel
pdb|3EAM|C Chain C, An Open-Pore Structure Of A Bacterial Pentameric Ligand-
Gated Ion Channel
pdb|3EAM|D Chain D, An Open-Pore Structure Of A Bacterial Pentameric Ligand-
Gated Ion Channel
pdb|3EAM|E Chain E, An Open-Pore Structure Of A Bacterial Pentameric Ligand-
Gated Ion Channel
pdb|4HFI|A Chain A, The Glic Pentameric Ligand-gated Ion Channel At 2.4 A
Resolution
pdb|4HFI|B Chain B, The Glic Pentameric Ligand-gated Ion Channel At 2.4 A
Resolution
pdb|4HFI|C Chain C, The Glic Pentameric Ligand-gated Ion Channel At 2.4 A
Resolution
pdb|4HFI|D Chain D, The Glic Pentameric Ligand-gated Ion Channel At 2.4 A
Resolution
pdb|4HFI|E Chain E, The Glic Pentameric Ligand-gated Ion Channel At 2.4 A
Resolution
pdb|4IL4|A Chain A, The Pentameric Ligand-gated Ion Channel Glic In Complex
With Se-ddm
pdb|4IL4|B Chain B, The Pentameric Ligand-gated Ion Channel Glic In Complex
With Se-ddm
pdb|4IL4|C Chain C, The Pentameric Ligand-gated Ion Channel Glic In Complex
With Se-ddm
pdb|4IL4|D Chain D, The Pentameric Ligand-gated Ion Channel Glic In Complex
With Se-ddm
pdb|4IL4|E Chain E, The Pentameric Ligand-gated Ion Channel Glic In Complex
With Se-ddm
Length = 317
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 63/299 (21%), Positives = 119/299 (39%), Gaps = 33/299 (11%)
Query: 189 PPNHGKGEPTIIKTNMLIRSMGPISEIDMDYSMDCYFRQYWRDSRLSFMGPINNLSLSIK 248
PP EP + T + + + + + ++ + W+D RL+F + + +
Sbjct: 7 PPPPIADEPLTVNTGIYLIECYSLDDKAETFKVNAFLSLSWKDRRLAFDPVRSGVRVKTY 66
Query: 249 MLEKIWRPDTYILNGKQSYVHTITVPNKLLRINQDGDILYSMRLTIKANCPMSLRNFPMD 308
E IW P+ +N + + + + ++ DG + Y R + + P+ R +P D
Sbjct: 67 EPEAIWIPEIRFVNVENARDADVVD----ISVSPDGTVQYLERFSARVLSPLDFRRYPFD 122
Query: 309 TQSCP--LILGSY-------AYPIEKLVYHWTPGKSIS-FVPGMAISQFDFISSPKRNFT 358
+Q+ LI+ S A +EK+ GK+ F+ G I F + P NF
Sbjct: 123 SQTLHIYLIVRSVDTRNIVLAVDLEKV------GKNDDVFLTGWDIESFTAVVKPA-NFA 175
Query: 359 FKRREGEFSLLQVNFNLKRHRGYF--VIQVYVPCVLIVVLSWVSFWIHREATSDRXXXXX 416
+ R ++++ L+ R YF + + +P + I+ +SW +FW +TS
Sbjct: 176 LEDRLES----KLDYQLRISRQYFSYIPNIILPMLFILFISWTAFW----STSYEANVTL 227
Query: 417 XXXXXXXXXXXD--SRTDLPKVRYATALDWFLLMSFFYCIATILEFAAVHYFTKLCYPG 473
+ T+LPK Y T + M + + ++E HY P
Sbjct: 228 VVSTLIAHIAFNILVETNLPKTPYMTYTGAIIFMIYLFYFVAVIEVTVQHYLKVESQPA 286
>pdb|3EHZ|A Chain A, X-Ray Structure Of The Pentameric Ligand Gated Ion Channel
Of Gloebacter Violaceus (Glic) In A Presumptive Open
Conformation
pdb|3EHZ|B Chain B, X-Ray Structure Of The Pentameric Ligand Gated Ion Channel
Of Gloebacter Violaceus (Glic) In A Presumptive Open
Conformation
pdb|3EHZ|C Chain C, X-Ray Structure Of The Pentameric Ligand Gated Ion Channel
Of Gloebacter Violaceus (Glic) In A Presumptive Open
Conformation
pdb|3EHZ|D Chain D, X-Ray Structure Of The Pentameric Ligand Gated Ion Channel
Of Gloebacter Violaceus (Glic) In A Presumptive Open
Conformation
pdb|3EHZ|E Chain E, X-Ray Structure Of The Pentameric Ligand Gated Ion Channel
Of Gloebacter Violaceus (Glic) In A Presumptive Open
Conformation
pdb|2XQ3|A Chain A, Pentameric Ligand Gated Ion Channel Glic In Complex With
Br-Lidocaine
pdb|2XQ3|B Chain B, Pentameric Ligand Gated Ion Channel Glic In Complex With
Br-Lidocaine
pdb|2XQ3|C Chain C, Pentameric Ligand Gated Ion Channel Glic In Complex With
Br-Lidocaine
pdb|2XQ3|D Chain D, Pentameric Ligand Gated Ion Channel Glic In Complex With
Br-Lidocaine
pdb|2XQ3|E Chain E, Pentameric Ligand Gated Ion Channel Glic In Complex With
Br-Lidocaine
pdb|2XQ4|A Chain A, Pentameric Ligand Gated Ion Channel Glic In Complex With
Tetramethylarsonium (Tmas)
pdb|2XQ4|B Chain B, Pentameric Ligand Gated Ion Channel Glic In Complex With
Tetramethylarsonium (Tmas)
pdb|2XQ4|C Chain C, Pentameric Ligand Gated Ion Channel Glic In Complex With
Tetramethylarsonium (Tmas)
pdb|2XQ4|D Chain D, Pentameric Ligand Gated Ion Channel Glic In Complex With
Tetramethylarsonium (Tmas)
pdb|2XQ4|E Chain E, Pentameric Ligand Gated Ion Channel Glic In Complex With
Tetramethylarsonium (Tmas)
pdb|2XQ5|A Chain A, Pentameric Ligand Gated Ion Channel Glic In Complex With
Tetraethylarsonium (Teas)
pdb|2XQ5|B Chain B, Pentameric Ligand Gated Ion Channel Glic In Complex With
Tetraethylarsonium (Teas)
pdb|2XQ5|C Chain C, Pentameric Ligand Gated Ion Channel Glic In Complex With
Tetraethylarsonium (Teas)
pdb|2XQ5|D Chain D, Pentameric Ligand Gated Ion Channel Glic In Complex With
Tetraethylarsonium (Teas)
pdb|2XQ5|E Chain E, Pentameric Ligand Gated Ion Channel Glic In Complex With
Tetraethylarsonium (Teas)
pdb|2XQ6|A Chain A, Pentameric Ligand Gated Ion Channel Glic In Complex With
Cesium Ion (Cs+)
pdb|2XQ6|B Chain B, Pentameric Ligand Gated Ion Channel Glic In Complex With
Cesium Ion (Cs+)
pdb|2XQ6|C Chain C, Pentameric Ligand Gated Ion Channel Glic In Complex With
Cesium Ion (Cs+)
pdb|2XQ6|D Chain D, Pentameric Ligand Gated Ion Channel Glic In Complex With
Cesium Ion (Cs+)
pdb|2XQ6|E Chain E, Pentameric Ligand Gated Ion Channel Glic In Complex With
Cesium Ion (Cs+)
pdb|2XQ7|A Chain A, Pentameric Ligand Gated Ion Channel Glic In Complex With
Cadmium Ion (Cd2+)
pdb|2XQ7|B Chain B, Pentameric Ligand Gated Ion Channel Glic In Complex With
Cadmium Ion (Cd2+)
pdb|2XQ7|C Chain C, Pentameric Ligand Gated Ion Channel Glic In Complex With
Cadmium Ion (Cd2+)
pdb|2XQ7|D Chain D, Pentameric Ligand Gated Ion Channel Glic In Complex With
Cadmium Ion (Cd2+)
pdb|2XQ7|E Chain E, Pentameric Ligand Gated Ion Channel Glic In Complex With
Cadmium Ion (Cd2+)
pdb|2XQ8|A Chain A, Pentameric Ligand Gated Ion Channel Glic In Complex With
Zinc Ion (Zn2+)
pdb|2XQ8|B Chain B, Pentameric Ligand Gated Ion Channel Glic In Complex With
Zinc Ion (Zn2+)
pdb|2XQ8|C Chain C, Pentameric Ligand Gated Ion Channel Glic In Complex With
Zinc Ion (Zn2+)
pdb|2XQ8|D Chain D, Pentameric Ligand Gated Ion Channel Glic In Complex With
Zinc Ion (Zn2+)
pdb|2XQ8|E Chain E, Pentameric Ligand Gated Ion Channel Glic In Complex With
Zinc Ion (Zn2+)
pdb|2XQA|A Chain A, Pentameric Ligand Gated Ion Channel Glic In Complex With
Tetrabutylantimony (Tbsb)
pdb|2XQA|B Chain B, Pentameric Ligand Gated Ion Channel Glic In Complex With
Tetrabutylantimony (Tbsb)
pdb|2XQA|C Chain C, Pentameric Ligand Gated Ion Channel Glic In Complex With
Tetrabutylantimony (Tbsb)
pdb|2XQA|D Chain D, Pentameric Ligand Gated Ion Channel Glic In Complex With
Tetrabutylantimony (Tbsb)
pdb|2XQA|E Chain E, Pentameric Ligand Gated Ion Channel Glic In Complex With
Tetrabutylantimony (Tbsb)
pdb|4F8H|A Chain A, X-Ray Structure Of The Anesthetic Ketamine Bound To The
Glic Pentameric Ligand-Gated Ion Channel
pdb|4F8H|B Chain B, X-Ray Structure Of The Anesthetic Ketamine Bound To The
Glic Pentameric Ligand-Gated Ion Channel
pdb|4F8H|C Chain C, X-Ray Structure Of The Anesthetic Ketamine Bound To The
Glic Pentameric Ligand-Gated Ion Channel
pdb|4F8H|D Chain D, X-Ray Structure Of The Anesthetic Ketamine Bound To The
Glic Pentameric Ligand-Gated Ion Channel
pdb|4F8H|E Chain E, X-Ray Structure Of The Anesthetic Ketamine Bound To The
Glic Pentameric Ligand-Gated Ion Channel
Length = 317
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 63/299 (21%), Positives = 119/299 (39%), Gaps = 33/299 (11%)
Query: 189 PPNHGKGEPTIIKTNMLIRSMGPISEIDMDYSMDCYFRQYWRDSRLSFMGPINNLSLSIK 248
PP EP + T + + + + + ++ + W+D RL+F + + +
Sbjct: 7 PPPPIADEPLTVNTGIYLIECYSLDDKAETFKVNAFLSLSWKDRRLAFDPVRSGVRVKTY 66
Query: 249 MLEKIWRPDTYILNGKQSYVHTITVPNKLLRINQDGDILYSMRLTIKANCPMSLRNFPMD 308
E IW P+ +N + + + + ++ DG + Y R + + P+ R +P D
Sbjct: 67 EPEAIWIPEIRFVNVENARDADVVD----ISVSPDGTVQYLERFSARVLSPLDFRRYPFD 122
Query: 309 TQSCP--LILGSY-------AYPIEKLVYHWTPGKSIS-FVPGMAISQFDFISSPKRNFT 358
+Q+ LI+ S A +EK+ GK+ F+ G I F + P NF
Sbjct: 123 SQTLHIYLIVRSVDTRNIVLAVDLEKV------GKNDDVFLTGWDIESFTAVVKPA-NFA 175
Query: 359 FKRREGEFSLLQVNFNLKRHRGYF--VIQVYVPCVLIVVLSWVSFWIHREATSDRXXXXX 416
+ R ++++ L+ R YF + + +P + I+ +SW +FW +TS
Sbjct: 176 LEDRLES----KLDYQLRISRQYFSYIPNIILPMLFILFISWTAFW----STSYEANVTL 227
Query: 417 XXXXXXXXXXXD--SRTDLPKVRYATALDWFLLMSFFYCIATILEFAAVHYFTKLCYPG 473
+ T+LPK Y T + M + + ++E HY P
Sbjct: 228 VVSTLIAHIAFNILVETNLPKTPYMTYTGAIIFMIYLFYFVAVIEVTVQHYLKVESQPA 286
>pdb|3P4W|A Chain A, Structure Of Desflurane Bound To A Pentameric Ligand-Gated
Ion Channel, Glic
pdb|3P4W|B Chain B, Structure Of Desflurane Bound To A Pentameric Ligand-Gated
Ion Channel, Glic
pdb|3P4W|C Chain C, Structure Of Desflurane Bound To A Pentameric Ligand-Gated
Ion Channel, Glic
pdb|3P4W|D Chain D, Structure Of Desflurane Bound To A Pentameric Ligand-Gated
Ion Channel, Glic
pdb|3P4W|E Chain E, Structure Of Desflurane Bound To A Pentameric Ligand-Gated
Ion Channel, Glic
pdb|3P50|A Chain A, Structure Of Propofol Bound To A Pentameric Ligand-Gated
Ion Channel, Glic
pdb|3P50|B Chain B, Structure Of Propofol Bound To A Pentameric Ligand-Gated
Ion Channel, Glic
pdb|3P50|C Chain C, Structure Of Propofol Bound To A Pentameric Ligand-Gated
Ion Channel, Glic
pdb|3P50|D Chain D, Structure Of Propofol Bound To A Pentameric Ligand-Gated
Ion Channel, Glic
pdb|3P50|E Chain E, Structure Of Propofol Bound To A Pentameric Ligand-Gated
Ion Channel, Glic
Length = 318
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 63/299 (21%), Positives = 119/299 (39%), Gaps = 33/299 (11%)
Query: 189 PPNHGKGEPTIIKTNMLIRSMGPISEIDMDYSMDCYFRQYWRDSRLSFMGPINNLSLSIK 248
PP EP + T + + + + + ++ + W+D RL+F + + +
Sbjct: 7 PPPPIADEPLTVNTGIYLIECYSLDDKAETFKVNAFLSLSWKDRRLAFDPVRSGVRVKTY 66
Query: 249 MLEKIWRPDTYILNGKQSYVHTITVPNKLLRINQDGDILYSMRLTIKANCPMSLRNFPMD 308
E IW P+ +N + + + + ++ DG + Y R + + P+ R +P D
Sbjct: 67 EPEAIWIPEIRFVNVENARDADVVD----ISVSPDGTVQYLERFSARVLSPLDFRRYPFD 122
Query: 309 TQSCP--LILGSY-------AYPIEKLVYHWTPGKSIS-FVPGMAISQFDFISSPKRNFT 358
+Q+ LI+ S A +EK+ GK+ F+ G I F + P NF
Sbjct: 123 SQTLHIYLIVRSVDTRNIVLAVDLEKV------GKNDDVFLTGWDIESFTAVVKPA-NFA 175
Query: 359 FKRREGEFSLLQVNFNLKRHRGYF--VIQVYVPCVLIVVLSWVSFWIHREATSDRXXXXX 416
+ R ++++ L+ R YF + + +P + I+ +SW +FW +TS
Sbjct: 176 LEDRLES----KLDYQLRISRQYFSYIPNIILPMLFILFISWTAFW----STSYEANVTL 227
Query: 417 XXXXXXXXXXXD--SRTDLPKVRYATALDWFLLMSFFYCIATILEFAAVHYFTKLCYPG 473
+ T+LPK Y T + M + + ++E HY P
Sbjct: 228 VVSTLIAHIAFNILVETNLPKTPYMTYTGAIIFMIYLFYFVAVIEVTVQHYLKVESQPA 286
>pdb|4AQ5|B Chain B, Gating Movement In Acetylcholine Receptor Analysed By
Time- Resolved Electron Cryo-Microscopy (Closed Class)
pdb|4AQ9|B Chain B, Gating Movement In Acetylcholine Receptor Analysed By
Time-Resolved Electron Cryo-Microscopy (Open Class)
Length = 493
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/245 (22%), Positives = 110/245 (44%), Gaps = 19/245 (7%)
Query: 176 VLNNLLKNYQSSEPPNHGKGEPTIIKTNMLIRSMGPISEIDMDYSMDCYFRQYWRDSRL- 234
+L+ L +NY P+ G+ ++ + + S+ ++E + + + + W D RL
Sbjct: 31 LLSVLFENYNPKVRPSQTVGDKVTVRVGLTLTSLLILNEKNEEMTTSVFLNLAWTDYRLQ 90
Query: 235 ----SFMGPINNLSLSIKMLEKIWRPDTYILNGKQSYVHTITVPNKLLRINQDGDILYSM 290
++ G I +LS+ + +W+PD ++N N L + G + +
Sbjct: 91 WDPAAYEG-IKDLSIP---SDDVWQPDIVLMNNNDGSFEITLHVNVL--VQHTGAVSWHP 144
Query: 291 RLTIKANCPMSLRNFPMDTQSCPLILGSYAYPI-EKLVYHWTPGKSISFVPGMAISQFDF 349
+++C + + FP D Q+C ++ SY Y E ++ H K V + I+Q F
Sbjct: 145 SAIYRSSCTIKVMYFPFDWQNCTMVFKSYTYDTSEVILQHALDAKGEREVKEIMINQDAF 204
Query: 350 ISSPKRNFTFKR-----REGEFSLLQVNFNL--KRHRGYFVIQVYVPCVLIVVLSWVSFW 402
+ + + K R + S V F L +R ++++ VPC+LI +L+ + F+
Sbjct: 205 TENGQWSIEHKPSRKNWRSDDPSYEDVTFYLIIQRKPLFYIVYTIVPCILISILAILVFY 264
Query: 403 IHREA 407
+ +A
Sbjct: 265 LPPDA 269
>pdb|4ILC|A Chain A, The Glic Pentameric Ligand-gated Ion Channel In Complex
With Sulfates
pdb|4ILC|B Chain B, The Glic Pentameric Ligand-gated Ion Channel In Complex
With Sulfates
pdb|4ILC|C Chain C, The Glic Pentameric Ligand-gated Ion Channel In Complex
With Sulfates
pdb|4ILC|D Chain D, The Glic Pentameric Ligand-gated Ion Channel In Complex
With Sulfates
pdb|4ILC|E Chain E, The Glic Pentameric Ligand-gated Ion Channel In Complex
With Sulfates
Length = 320
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 63/299 (21%), Positives = 119/299 (39%), Gaps = 33/299 (11%)
Query: 189 PPNHGKGEPTIIKTNMLIRSMGPISEIDMDYSMDCYFRQYWRDSRLSFMGPINNLSLSIK 248
PP EP + T + + + + + ++ + W+D RL+F + + +
Sbjct: 11 PPPPIADEPLTVNTGIYLIECYSLDDKAETFKVNAFLSLSWKDRRLAFDPVRSGVRVKTY 70
Query: 249 MLEKIWRPDTYILNGKQSYVHTITVPNKLLRINQDGDILYSMRLTIKANCPMSLRNFPMD 308
E IW P+ +N + + + + ++ DG + Y R + + P+ R +P D
Sbjct: 71 EPEAIWIPEIRFVNVENARDADVVD----ISVSPDGTVQYLERFSARVLSPLDFRRYPFD 126
Query: 309 TQSCP--LILGSY-------AYPIEKLVYHWTPGKSIS-FVPGMAISQFDFISSPKRNFT 358
+Q+ LI+ S A +EK+ GK+ F+ G I F + P NF
Sbjct: 127 SQTLHIYLIVRSVDTRNIVLAVDLEKV------GKNDDVFLTGWDIESFTAVVKPA-NFA 179
Query: 359 FKRREGEFSLLQVNFNLKRHRGYF--VIQVYVPCVLIVVLSWVSFWIHREATSDRXXXXX 416
+ R ++++ L+ R YF + + +P + I+ +SW +FW +TS
Sbjct: 180 LEDRLES----KLDYQLRISRQYFSYIPNIILPMLFILFISWTAFW----STSYEANVTL 231
Query: 417 XXXXXXXXXXXD--SRTDLPKVRYATALDWFLLMSFFYCIATILEFAAVHYFTKLCYPG 473
+ T+LPK Y T + M + + ++E HY P
Sbjct: 232 VVSTLIAHIAFNILVETNLPKTPYMTYTGAIIFMIYLFYFVAVIEVTVQHYLKVESQPA 290
>pdb|3TLT|A Chain A, The Glic Pentameric Ligand-Gated Ion Channel H11'f Mutant
In A Locally-Closed Conformation (Lc1 Subtype)
pdb|3TLT|B Chain B, The Glic Pentameric Ligand-Gated Ion Channel H11'f Mutant
In A Locally-Closed Conformation (Lc1 Subtype)
pdb|3TLT|C Chain C, The Glic Pentameric Ligand-Gated Ion Channel H11'f Mutant
In A Locally-Closed Conformation (Lc1 Subtype)
pdb|3TLT|D Chain D, The Glic Pentameric Ligand-Gated Ion Channel H11'f Mutant
In A Locally-Closed Conformation (Lc1 Subtype)
pdb|3TLT|E Chain E, The Glic Pentameric Ligand-Gated Ion Channel H11'f Mutant
In A Locally-Closed Conformation (Lc1 Subtype)
Length = 321
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 63/299 (21%), Positives = 119/299 (39%), Gaps = 33/299 (11%)
Query: 189 PPNHGKGEPTIIKTNMLIRSMGPISEIDMDYSMDCYFRQYWRDSRLSFMGPINNLSLSIK 248
PP EP + T + + + + + ++ + W+D RL+F + + +
Sbjct: 11 PPPPIADEPLTVNTGIYLIECYSLDDKAETFKVNAFLSLSWKDRRLAFDPVRSGVRVKTY 70
Query: 249 MLEKIWRPDTYILNGKQSYVHTITVPNKLLRINQDGDILYSMRLTIKANCPMSLRNFPMD 308
E IW P+ +N + + + + ++ DG + Y R + + P+ R +P D
Sbjct: 71 EPEAIWIPEIRFVNVENARDADVVD----ISVSPDGTVQYLERFSARVLSPLDFRRYPFD 126
Query: 309 TQSCP--LILGSY-------AYPIEKLVYHWTPGKSIS-FVPGMAISQFDFISSPKRNFT 358
+Q+ LI+ S A +EK+ GK+ F+ G I F + P NF
Sbjct: 127 SQTLHIYLIVRSVDTRNIVLAVDLEKV------GKNDDVFLTGWDIESFTAVVKPA-NFA 179
Query: 359 FKRREGEFSLLQVNFNLKRHRGYF--VIQVYVPCVLIVVLSWVSFWIHREATSDRXXXXX 416
+ R ++++ L+ R YF + + +P + I+ +SW +FW +TS
Sbjct: 180 LEDRLES----KLDYQLRISRQYFSYIPNIILPMLFILFISWTAFW----STSYEANVTL 231
Query: 417 XXXXXXXXXXXD--SRTDLPKVRYATALDWFLLMSFFYCIATILEFAAVHYFTKLCYPG 473
+ T+LPK Y T + M + + ++E HY P
Sbjct: 232 VVSTLIAFIAFNILVETNLPKTPYMTYTGAIIFMIYLFYFVAVIEVTVQHYLKVESQPA 290
>pdb|2BG9|B Chain B, Refined Structure Of The Nicotinic Acetylcholine Receptor
At 4a Resolution
Length = 370
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 50/239 (20%), Positives = 104/239 (43%), Gaps = 16/239 (6%)
Query: 176 VLNNLLKNYQSSEPPNHGKGEPTIIKTNMLIRSMGPISEIDMDYSMDCYFRQYWRDSRL- 234
+L+ L +NY P+ G+ ++ + + S+ ++E + + + + W D RL
Sbjct: 7 LLSVLFENYNPKVRPSQTVGDKVTVRVGLTLTSLLILNEKNEEMTTSVFLNLAWTDYRLQ 66
Query: 235 ----SFMGPINNLSLSIKMLEKIWRPDTYILNGKQSYVHTITVPNKLLRINQDGDILYSM 290
++ G I +LS+ + +W+PD ++N N L + G + +
Sbjct: 67 WDPAAYEG-IKDLSIP---SDDVWQPDIVLMNNNDGSFEITLHVNVL--VQHTGAVSWHP 120
Query: 291 RLTIKANCPMSLRNFPMDTQSCPLILGSYAYPIEKLVYHWTPGKSISFVPGMAISQFDFI 350
+++C + + FP D Q+C ++ SY Y +++ I+ Q+
Sbjct: 121 SAIYRSSCTIKVMYFPFDWQNCTMVFKSYTYDTSEVILQHALDAMINQDAFTENGQWSIE 180
Query: 351 SSPKRNFTFKRREGEFSLLQVNFNL--KRHRGYFVIQVYVPCVLIVVLSWVSFWIHREA 407
P R R + S V F L +R ++++ VPC+LI +L+ + F++ +A
Sbjct: 181 HKPSRK---NWRSDDPSYEDVTFYLIIQRKPLFYIVYTIVPCILISILAILVFYLPPDA 236
>pdb|3LSV|A Chain A, Structure Of The A237f Mutant Of The Pentameric Ligand
Gated Channel From Gloeobacter Violaceus
pdb|3LSV|B Chain B, Structure Of The A237f Mutant Of The Pentameric Ligand
Gated Channel From Gloeobacter Violaceus
pdb|3LSV|C Chain C, Structure Of The A237f Mutant Of The Pentameric Ligand
Gated Channel From Gloeobacter Violaceus
pdb|3LSV|D Chain D, Structure Of The A237f Mutant Of The Pentameric Ligand
Gated Channel From Gloeobacter Violaceus
pdb|3LSV|E Chain E, Structure Of The A237f Mutant Of The Pentameric Ligand
Gated Channel From Gloeobacter Violaceus
Length = 317
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 63/299 (21%), Positives = 119/299 (39%), Gaps = 33/299 (11%)
Query: 189 PPNHGKGEPTIIKTNMLIRSMGPISEIDMDYSMDCYFRQYWRDSRLSFMGPINNLSLSIK 248
PP EP + T + + + + + ++ + W+D RL+F + + +
Sbjct: 7 PPPPIADEPLTVNTGIYLIECYSLDDKAETFKVNAFLSLSWKDRRLAFDPVRSGVRVKTY 66
Query: 249 MLEKIWRPDTYILNGKQSYVHTITVPNKLLRINQDGDILYSMRLTIKANCPMSLRNFPMD 308
E IW P+ +N + + + + ++ DG + Y R + + P+ R +P D
Sbjct: 67 EPEAIWIPEIRFVNVENARDADVVD----ISVSPDGTVQYLERFSARVLSPLDFRRYPFD 122
Query: 309 TQSCP--LILGSY-------AYPIEKLVYHWTPGKSIS-FVPGMAISQFDFISSPKRNFT 358
+Q+ LI+ S A +EK+ GK+ F+ G I F + P NF
Sbjct: 123 SQTLHIYLIVRSVDTRNIVLAVDLEKV------GKNDDVFLTGWDIESFTAVVKPA-NFA 175
Query: 359 FKRREGEFSLLQVNFNLKRHRGYF--VIQVYVPCVLIVVLSWVSFWIHREATSDRXXXXX 416
+ R ++++ L+ R YF + + +P + I+ +SW +FW +TS
Sbjct: 176 LEDRLES----KLDYQLRISRQYFSYIPNIILPMLFILFISWTAFW----STSYEANVTL 227
Query: 417 XXXXXXXXXXXD--SRTDLPKVRYATALDWFLLMSFFYCIATILEFAAVHYFTKLCYPG 473
+ T+LPK Y T + M + + ++E HY P
Sbjct: 228 VVSTLIAHIFFNILVETNLPKTPYMTYTGAIIFMIYLFYFVAVIEVTVQHYLKVESQPA 286
>pdb|4IL9|A Chain A, The Pentameric Ligand-gated Ion Channel Glic A237f In
Complex With Bromide
pdb|4IL9|B Chain B, The Pentameric Ligand-gated Ion Channel Glic A237f In
Complex With Bromide
pdb|4IL9|C Chain C, The Pentameric Ligand-gated Ion Channel Glic A237f In
Complex With Bromide
pdb|4IL9|D Chain D, The Pentameric Ligand-gated Ion Channel Glic A237f In
Complex With Bromide
pdb|4IL9|E Chain E, The Pentameric Ligand-gated Ion Channel Glic A237f In
Complex With Bromide
pdb|4ILA|A Chain A, The Pentameric Ligand-gated Ion Channel Glic A237f In
Complex With Cesium
pdb|4ILA|B Chain B, The Pentameric Ligand-gated Ion Channel Glic A237f In
Complex With Cesium
pdb|4ILA|C Chain C, The Pentameric Ligand-gated Ion Channel Glic A237f In
Complex With Cesium
pdb|4ILA|D Chain D, The Pentameric Ligand-gated Ion Channel Glic A237f In
Complex With Cesium
pdb|4ILA|E Chain E, The Pentameric Ligand-gated Ion Channel Glic A237f In
Complex With Cesium
pdb|4ILB|A Chain A, The Pentameric Ligand-gated Ion Channel Glic A237f In
Complex With Rubidium
pdb|4ILB|B Chain B, The Pentameric Ligand-gated Ion Channel Glic A237f In
Complex With Rubidium
pdb|4ILB|C Chain C, The Pentameric Ligand-gated Ion Channel Glic A237f In
Complex With Rubidium
pdb|4ILB|D Chain D, The Pentameric Ligand-gated Ion Channel Glic A237f In
Complex With Rubidium
pdb|4ILB|E Chain E, The Pentameric Ligand-gated Ion Channel Glic A237f In
Complex With Rubidium
Length = 320
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 63/299 (21%), Positives = 119/299 (39%), Gaps = 33/299 (11%)
Query: 189 PPNHGKGEPTIIKTNMLIRSMGPISEIDMDYSMDCYFRQYWRDSRLSFMGPINNLSLSIK 248
PP EP + T + + + + + ++ + W+D RL+F + + +
Sbjct: 11 PPPPIADEPLTVNTGIYLIECYSLDDKAETFKVNAFLSLSWKDRRLAFDPVRSGVRVKTY 70
Query: 249 MLEKIWRPDTYILNGKQSYVHTITVPNKLLRINQDGDILYSMRLTIKANCPMSLRNFPMD 308
E IW P+ +N + + + + ++ DG + Y R + + P+ R +P D
Sbjct: 71 EPEAIWIPEIRFVNVENARDADVVD----ISVSPDGTVQYLERFSARVLSPLDFRRYPFD 126
Query: 309 TQSCP--LILGSY-------AYPIEKLVYHWTPGKSIS-FVPGMAISQFDFISSPKRNFT 358
+Q+ LI+ S A +EK+ GK+ F+ G I F + P NF
Sbjct: 127 SQTLHIYLIVRSVDTRNIVLAVDLEKV------GKNDDVFLTGWDIESFTAVVKPA-NFA 179
Query: 359 FKRREGEFSLLQVNFNLKRHRGYF--VIQVYVPCVLIVVLSWVSFWIHREATSDRXXXXX 416
+ R ++++ L+ R YF + + +P + I+ +SW +FW +TS
Sbjct: 180 LEDRLES----KLDYQLRISRQYFSYIPNIILPMLFILFISWTAFW----STSYEANVTL 231
Query: 417 XXXXXXXXXXXD--SRTDLPKVRYATALDWFLLMSFFYCIATILEFAAVHYFTKLCYPG 473
+ T+LPK Y T + M + + ++E HY P
Sbjct: 232 VVSTLIAHIFFNILVETNLPKTPYMTYTGAIIFMIYLFYFVAVIEVTVQHYLKVESQPA 290
>pdb|2XQ9|A Chain A, Pentameric Ligand Gated Ion Channel Glic Mutant E221a In
Complex With Tetraethylarsonium (Teas)
pdb|2XQ9|B Chain B, Pentameric Ligand Gated Ion Channel Glic Mutant E221a In
Complex With Tetraethylarsonium (Teas)
pdb|2XQ9|C Chain C, Pentameric Ligand Gated Ion Channel Glic Mutant E221a In
Complex With Tetraethylarsonium (Teas)
pdb|2XQ9|D Chain D, Pentameric Ligand Gated Ion Channel Glic Mutant E221a In
Complex With Tetraethylarsonium (Teas)
pdb|2XQ9|E Chain E, Pentameric Ligand Gated Ion Channel Glic Mutant E221a In
Complex With Tetraethylarsonium (Teas)
Length = 317
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 63/299 (21%), Positives = 119/299 (39%), Gaps = 33/299 (11%)
Query: 189 PPNHGKGEPTIIKTNMLIRSMGPISEIDMDYSMDCYFRQYWRDSRLSFMGPINNLSLSIK 248
PP EP + T + + + + + ++ + W+D RL+F + + +
Sbjct: 7 PPPPIADEPLTVNTGIYLIECYSLDDKAETFKVNAFLSLSWKDRRLAFDPVRSGVRVKTY 66
Query: 249 MLEKIWRPDTYILNGKQSYVHTITVPNKLLRINQDGDILYSMRLTIKANCPMSLRNFPMD 308
E IW P+ +N + + + + ++ DG + Y R + + P+ R +P D
Sbjct: 67 EPEAIWIPEIRFVNVENARDADVVD----ISVSPDGTVQYLERFSARVLSPLDFRRYPFD 122
Query: 309 TQSCP--LILGSY-------AYPIEKLVYHWTPGKSIS-FVPGMAISQFDFISSPKRNFT 358
+Q+ LI+ S A +EK+ GK+ F+ G I F + P NF
Sbjct: 123 SQTLHIYLIVRSVDTRNIVLAVDLEKV------GKNDDVFLTGWDIESFTAVVKPA-NFA 175
Query: 359 FKRREGEFSLLQVNFNLKRHRGYF--VIQVYVPCVLIVVLSWVSFWIHREATSDRXXXXX 416
+ R ++++ L+ R YF + + +P + I+ +SW +FW +TS
Sbjct: 176 LEDRLES----KLDYQLRISRQYFSYIPNIILPMLFILFISWTAFW----STSYDANVTL 227
Query: 417 XXXXXXXXXXXD--SRTDLPKVRYATALDWFLLMSFFYCIATILEFAAVHYFTKLCYPG 473
+ T+LPK Y T + M + + ++E HY P
Sbjct: 228 VVSTLIAHIAFNILVETNLPKTPYMTYTGAIIFMIYLFYFVAVIEVTVQHYLKVESQPA 286
>pdb|3TLS|A Chain A, The Glic Pentameric Ligand-Gated Ion Channel E19'p Mutant
In A Locally-Closed Conformation (Lc2 Subtype)
pdb|3TLS|B Chain B, The Glic Pentameric Ligand-Gated Ion Channel E19'p Mutant
In A Locally-Closed Conformation (Lc2 Subtype)
pdb|3TLS|C Chain C, The Glic Pentameric Ligand-Gated Ion Channel E19'p Mutant
In A Locally-Closed Conformation (Lc2 Subtype)
pdb|3TLS|D Chain D, The Glic Pentameric Ligand-Gated Ion Channel E19'p Mutant
In A Locally-Closed Conformation (Lc2 Subtype)
pdb|3TLS|E Chain E, The Glic Pentameric Ligand-Gated Ion Channel E19'p Mutant
In A Locally-Closed Conformation (Lc2 Subtype)
Length = 321
Score = 61.6 bits (148), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 63/299 (21%), Positives = 119/299 (39%), Gaps = 33/299 (11%)
Query: 189 PPNHGKGEPTIIKTNMLIRSMGPISEIDMDYSMDCYFRQYWRDSRLSFMGPINNLSLSIK 248
PP EP + T + + + + + ++ + W+D RL+F + + +
Sbjct: 11 PPPPIADEPLTVNTGIYLIECYSLDDKAETFKVNAFLSLSWKDRRLAFDPVRSGVRVKTY 70
Query: 249 MLEKIWRPDTYILNGKQSYVHTITVPNKLLRINQDGDILYSMRLTIKANCPMSLRNFPMD 308
E IW P+ +N + + + + ++ DG + Y R + + P+ R +P D
Sbjct: 71 EPEAIWIPEIRFVNVENARDADVVD----ISVSPDGTVQYLERFSARVLSPLDFRRYPFD 126
Query: 309 TQSCP--LILGSY-------AYPIEKLVYHWTPGKSIS-FVPGMAISQFDFISSPKRNFT 358
+Q+ LI+ S A +EK+ GK+ F+ G I F + P NF
Sbjct: 127 SQTLHIYLIVRSVDTRNIVLAVDLEKV------GKNDDVFLTGWDIESFTAVVKPA-NFA 179
Query: 359 FKRREGEFSLLQVNFNLKRHRGYF--VIQVYVPCVLIVVLSWVSFWIHREATSDRXXXXX 416
+ R ++++ L+ R YF + + +P + I+ +SW +FW +TS
Sbjct: 180 LEDRLES----KLDYQLRISRQYFSYIPNIILPMLFILFISWTAFW----STSYEANVTL 231
Query: 417 XXXXXXXXXXXD--SRTDLPKVRYATALDWFLLMSFFYCIATILEFAAVHYFTKLCYPG 473
+ T+LPK Y T + M + + ++E HY P
Sbjct: 232 VVSTLIAHIAFNILVPTNLPKTPYMTYTGAIIFMIYLFYFVAVIEVTVQHYLKVESQPA 290
>pdb|3TLW|A Chain A, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Oxidized Mutant In A Locally-Closed Conformation (Lc2
Subtype)
pdb|3TLW|B Chain B, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Oxidized Mutant In A Locally-Closed Conformation (Lc2
Subtype)
pdb|3TLW|C Chain C, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Oxidized Mutant In A Locally-Closed Conformation (Lc2
Subtype)
pdb|3TLW|D Chain D, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Oxidized Mutant In A Locally-Closed Conformation (Lc2
Subtype)
pdb|3TLW|E Chain E, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Oxidized Mutant In A Locally-Closed Conformation (Lc2
Subtype)
pdb|3UU4|A Chain A, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Mutant Reduced In The Crystal In A Locally-Closed
Conformation (Lc1 Subtype)
pdb|3UU4|B Chain B, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Mutant Reduced In The Crystal In A Locally-Closed
Conformation (Lc1 Subtype)
pdb|3UU4|C Chain C, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Mutant Reduced In The Crystal In A Locally-Closed
Conformation (Lc1 Subtype)
pdb|3UU4|D Chain D, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Mutant Reduced In The Crystal In A Locally-Closed
Conformation (Lc1 Subtype)
pdb|3UU4|E Chain E, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Mutant Reduced In The Crystal In A Locally-Closed
Conformation (Lc1 Subtype)
pdb|3UUB|A Chain A, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Mutant Reduced In Solution
pdb|3UUB|B Chain B, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Mutant Reduced In Solution
pdb|3UUB|C Chain C, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Mutant Reduced In Solution
pdb|3UUB|D Chain D, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Mutant Reduced In Solution
pdb|3UUB|E Chain E, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Mutant Reduced In Solution
pdb|3UUB|F Chain F, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Mutant Reduced In Solution
pdb|3UUB|G Chain G, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Mutant Reduced In Solution
pdb|3UUB|H Chain H, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Mutant Reduced In Solution
pdb|3UUB|I Chain I, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Mutant Reduced In Solution
pdb|3UUB|J Chain J, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Mutant Reduced In Solution
Length = 321
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 63/299 (21%), Positives = 118/299 (39%), Gaps = 33/299 (11%)
Query: 189 PPNHGKGEPTIIKTNMLIRSMGPISEIDMDYSMDCYFRQYWRDSRLSFMGPINNLSLSIK 248
PP EP + T + + + + + ++ + W+D RL+F + + +
Sbjct: 11 PPPPIADEPLTVNTGIYLIESYSLDDCAETFKVNAFLSLSWKDRRLAFDPVRSGVRVKTY 70
Query: 249 MLEKIWRPDTYILNGKQSYVHTITVPNKLLRINQDGDILYSMRLTIKANCPMSLRNFPMD 308
E IW P+ +N + + + + ++ DG + Y R + + P+ R +P D
Sbjct: 71 EPEAIWIPEIRFVNVENARDADVVD----ISVSPDGTVQYLERFSARVLSPLDFRRYPFD 126
Query: 309 TQSCP--LILGSY-------AYPIEKLVYHWTPGKSIS-FVPGMAISQFDFISSPKRNFT 358
+Q+ LI+ S A +EK+ GK+ F+ G I F + P NF
Sbjct: 127 SQTLHIYLIVRSVDTRNIVLAVDLEKV------GKNDDVFLTGWDIESFTAVVKPA-NFA 179
Query: 359 FKRREGEFSLLQVNFNLKRHRGYF--VIQVYVPCVLIVVLSWVSFWIHREATSDRXXXXX 416
+ R ++++ L+ R YF + + +P + I+ +SW +FW +TS
Sbjct: 180 LEDRLES----KLDYQLRISRQYFSYIPNIILPMLFILFISWTAFW----STSYEANVTL 231
Query: 417 XXXXXXXXXXXD--SRTDLPKVRYATALDWFLLMSFFYCIATILEFAAVHYFTKLCYPG 473
+ T LPK Y T + M + + ++E HY P
Sbjct: 232 VVSTLIAHIAFNILVETCLPKTPYMTYTGAIIFMIYLFYFVAVIEVTVQHYLKVESQPA 290
>pdb|3TLV|A Chain A, The Glic Pentameric Ligand-Gated Ion Channel Loop2-22'
Oxidized Mutant In A Locally-Closed Conformation (Lc3
Subtype)
pdb|3TLV|B Chain B, The Glic Pentameric Ligand-Gated Ion Channel Loop2-22'
Oxidized Mutant In A Locally-Closed Conformation (Lc3
Subtype)
pdb|3TLV|C Chain C, The Glic Pentameric Ligand-Gated Ion Channel Loop2-22'
Oxidized Mutant In A Locally-Closed Conformation (Lc3
Subtype)
pdb|3TLV|D Chain D, The Glic Pentameric Ligand-Gated Ion Channel Loop2-22'
Oxidized Mutant In A Locally-Closed Conformation (Lc3
Subtype)
pdb|3TLV|E Chain E, The Glic Pentameric Ligand-Gated Ion Channel Loop2-22'
Oxidized Mutant In A Locally-Closed Conformation (Lc3
Subtype)
pdb|3UU6|A Chain A, The Glic Pentameric Ligand-Gated Ion Channel Loop2-22'
Mutant Reduced In Solution
pdb|3UU6|B Chain B, The Glic Pentameric Ligand-Gated Ion Channel Loop2-22'
Mutant Reduced In Solution
pdb|3UU6|C Chain C, The Glic Pentameric Ligand-Gated Ion Channel Loop2-22'
Mutant Reduced In Solution
pdb|3UU6|D Chain D, The Glic Pentameric Ligand-Gated Ion Channel Loop2-22'
Mutant Reduced In Solution
pdb|3UU6|E Chain E, The Glic Pentameric Ligand-Gated Ion Channel Loop2-22'
Mutant Reduced In Solution
Length = 321
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 62/299 (20%), Positives = 118/299 (39%), Gaps = 33/299 (11%)
Query: 189 PPNHGKGEPTIIKTNMLIRSMGPISEIDMDYSMDCYFRQYWRDSRLSFMGPINNLSLSIK 248
PP EP + T + + + + + ++ + W+D RL+F + + +
Sbjct: 11 PPPPIADEPLTVNTGIYLIESYSLDDCAETFKVNAFLSLSWKDRRLAFDPVRSGVRVKTY 70
Query: 249 MLEKIWRPDTYILNGKQSYVHTITVPNKLLRINQDGDILYSMRLTIKANCPMSLRNFPMD 308
E IW P+ +N + + + + ++ DG + Y R + + P+ R +P D
Sbjct: 71 EPEAIWIPEIRFVNVENARDADVVD----ISVSPDGTVQYLERFSARVLSPLDFRRYPFD 126
Query: 309 TQSCP--LILGSY-------AYPIEKLVYHWTPGKSIS-FVPGMAISQFDFISSPKRNFT 358
+Q+ LI+ S A +EK+ GK+ F+ G I F + P NF
Sbjct: 127 SQTLHIYLIVRSVDTRNIVLAVDLEKV------GKNDDVFLTGWDIESFTAVVKPA-NFA 179
Query: 359 FKRREGEFSLLQVNFNLKRHRGYF--VIQVYVPCVLIVVLSWVSFWIHREATSDRXXXXX 416
+ R ++++ L+ R YF + + +P + I+ +SW +FW +TS
Sbjct: 180 LEDRLES----KLDYQLRISRQYFSYIPNIILPMLFILFISWTAFW----STSYEANVTL 231
Query: 417 XXXXXXXXXXXD--SRTDLPKVRYATALDWFLLMSFFYCIATILEFAAVHYFTKLCYPG 473
+ T+ PK Y T + M + + ++E HY P
Sbjct: 232 VVSTLIAHIAFNILVETNCPKTPYMTYTGAIIFMIYLFYFVAVIEVTVQHYLKVESQPA 290
>pdb|3UU3|A Chain A, The Glic Pentameric Ligand-Gated Ion Channel Loop2-20'
Oxidized Mutant In A Locally-Closed Conformation (Lc1
Subtype)
pdb|3UU3|B Chain B, The Glic Pentameric Ligand-Gated Ion Channel Loop2-20'
Oxidized Mutant In A Locally-Closed Conformation (Lc1
Subtype)
pdb|3UU3|C Chain C, The Glic Pentameric Ligand-Gated Ion Channel Loop2-20'
Oxidized Mutant In A Locally-Closed Conformation (Lc1
Subtype)
pdb|3UU3|D Chain D, The Glic Pentameric Ligand-Gated Ion Channel Loop2-20'
Oxidized Mutant In A Locally-Closed Conformation (Lc1
Subtype)
pdb|3UU3|E Chain E, The Glic Pentameric Ligand-Gated Ion Channel Loop2-20'
Oxidized Mutant In A Locally-Closed Conformation (Lc1
Subtype)
pdb|3UU5|A Chain A, The Glic Pentameric Ligand-Gated Ion Channel Loop2-20'
Mutant Reduced In Solution
pdb|3UU5|B Chain B, The Glic Pentameric Ligand-Gated Ion Channel Loop2-20'
Mutant Reduced In Solution
pdb|3UU5|C Chain C, The Glic Pentameric Ligand-Gated Ion Channel Loop2-20'
Mutant Reduced In Solution
pdb|3UU5|D Chain D, The Glic Pentameric Ligand-Gated Ion Channel Loop2-20'
Mutant Reduced In Solution
pdb|3UU5|E Chain E, The Glic Pentameric Ligand-Gated Ion Channel Loop2-20'
Mutant Reduced In Solution
Length = 321
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 62/299 (20%), Positives = 118/299 (39%), Gaps = 33/299 (11%)
Query: 189 PPNHGKGEPTIIKTNMLIRSMGPISEIDMDYSMDCYFRQYWRDSRLSFMGPINNLSLSIK 248
PP EP + T + + + + + ++ + W+D RL+F + + +
Sbjct: 11 PPPPIADEPLTVNTGIYLIESYSLDDCAETFKVNAFLSLSWKDRRLAFDPVRSGVRVKTY 70
Query: 249 MLEKIWRPDTYILNGKQSYVHTITVPNKLLRINQDGDILYSMRLTIKANCPMSLRNFPMD 308
E IW P+ +N + + + + ++ DG + Y R + + P+ R +P D
Sbjct: 71 EPEAIWIPEIRFVNVENARDADVVD----ISVSPDGTVQYLERFSARVLSPLDFRRYPFD 126
Query: 309 TQSCP--LILGSY-------AYPIEKLVYHWTPGKSIS-FVPGMAISQFDFISSPKRNFT 358
+Q+ LI+ S A +EK+ GK+ F+ G I F + P NF
Sbjct: 127 SQTLHIYLIVRSVDTRNIVLAVDLEKV------GKNDDVFLTGWDIESFTAVVKPA-NFA 179
Query: 359 FKRREGEFSLLQVNFNLKRHRGYF--VIQVYVPCVLIVVLSWVSFWIHREATSDRXXXXX 416
+ R ++++ L+ R YF + + +P + I+ +SW +FW +TS
Sbjct: 180 LEDRLES----KLDYQLRISRQYFSYIPNIILPMLFILFISWTAFW----STSYEANVTL 231
Query: 417 XXXXXXXXXXXD--SRTDLPKVRYATALDWFLLMSFFYCIATILEFAAVHYFTKLCYPG 473
+ +LPK Y T + M + + ++E HY P
Sbjct: 232 VVSTLIAHIAFNILVECNLPKTPYMTYTGAIIFMIYLFYFVAVIEVTVQHYLKVESQPA 290
>pdb|3TLU|A Chain A, The Glic Pentameric Ligand-Gated Ion Channel Loop2-24'
Oxidized Mutant In A Locally-Closed Conformation (Lc1
Subtype)
pdb|3TLU|B Chain B, The Glic Pentameric Ligand-Gated Ion Channel Loop2-24'
Oxidized Mutant In A Locally-Closed Conformation (Lc1
Subtype)
pdb|3TLU|C Chain C, The Glic Pentameric Ligand-Gated Ion Channel Loop2-24'
Oxidized Mutant In A Locally-Closed Conformation (Lc1
Subtype)
pdb|3TLU|D Chain D, The Glic Pentameric Ligand-Gated Ion Channel Loop2-24'
Oxidized Mutant In A Locally-Closed Conformation (Lc1
Subtype)
pdb|3TLU|E Chain E, The Glic Pentameric Ligand-Gated Ion Channel Loop2-24'
Oxidized Mutant In A Locally-Closed Conformation (Lc1
Subtype)
pdb|3UU8|A Chain A, The Glic Pentameric Ligand-Gated Ion Channel Loop2-24'
Mutant Reduced In Solution
pdb|3UU8|B Chain B, The Glic Pentameric Ligand-Gated Ion Channel Loop2-24'
Mutant Reduced In Solution
pdb|3UU8|C Chain C, The Glic Pentameric Ligand-Gated Ion Channel Loop2-24'
Mutant Reduced In Solution
pdb|3UU8|D Chain D, The Glic Pentameric Ligand-Gated Ion Channel Loop2-24'
Mutant Reduced In Solution
pdb|3UU8|E Chain E, The Glic Pentameric Ligand-Gated Ion Channel Loop2-24'
Mutant Reduced In Solution
Length = 321
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 62/299 (20%), Positives = 118/299 (39%), Gaps = 33/299 (11%)
Query: 189 PPNHGKGEPTIIKTNMLIRSMGPISEIDMDYSMDCYFRQYWRDSRLSFMGPINNLSLSIK 248
PP EP + T + + + + + ++ + W+D RL+F + + +
Sbjct: 11 PPPPIADEPLTVNTGIYLIESYSLDDCAETFKVNAFLSLSWKDRRLAFDPVRSGVRVKTY 70
Query: 249 MLEKIWRPDTYILNGKQSYVHTITVPNKLLRINQDGDILYSMRLTIKANCPMSLRNFPMD 308
E IW P+ +N + + + + ++ DG + Y R + + P+ R +P D
Sbjct: 71 EPEAIWIPEIRFVNVENARDADVVD----ISVSPDGTVQYLERFSARVLSPLDFRRYPFD 126
Query: 309 TQSCP--LILGSY-------AYPIEKLVYHWTPGKSIS-FVPGMAISQFDFISSPKRNFT 358
+Q+ LI+ S A +EK+ GK+ F+ G I F + P NF
Sbjct: 127 SQTLHIYLIVRSVDTRNIVLAVDLEKV------GKNDDVFLTGWDIESFTAVVKPA-NFA 179
Query: 359 FKRREGEFSLLQVNFNLKRHRGYF--VIQVYVPCVLIVVLSWVSFWIHREATSDRXXXXX 416
+ R ++++ L+ R YF + + +P + I+ +SW +FW +TS
Sbjct: 180 LEDRLES----KLDYQLRISRQYFSYIPNIILPMLFILFISWTAFW----STSYEANVTL 231
Query: 417 XXXXXXXXXXXD--SRTDLPKVRYATALDWFLLMSFFYCIATILEFAAVHYFTKLCYPG 473
+ T+LP Y T + M + + ++E HY P
Sbjct: 232 VVSTLIAHIAFNILVETNLPCTPYMTYTGAIIFMIYLFYFVAVIEVTVQHYLKVESQPA 290
>pdb|2BG9|A Chain A, Refined Structure Of The Nicotinic Acetylcholine Receptor
At 4a Resolution.
pdb|2BG9|D Chain D, Refined Structure Of The Nicotinic Acetylcholine Receptor
At 4a Resolution
Length = 370
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 57/259 (22%), Positives = 102/259 (39%), Gaps = 57/259 (22%)
Query: 174 TLVLNNLLKNYQSSEPPNHGKGEPTIIKTNMLIRSMGPISEIDMDYSMDCYFRQYWRDSR 233
T ++ NLL+NY P I + + + + E++ + RQ W D R
Sbjct: 5 TRLVANLLENYNKVIRPVEHHTHFVDITVGLQLIQLINVDEVNQIVETNVRLRQQWIDVR 64
Query: 234 LSF----MGPINNLSLSIKMLEKIWRPDTYILN---GKQSYVHTITVPNKLLRINQDGDI 286
L + G I + L + +W PD + N G + VH KLL ++ G I
Sbjct: 65 LRWNPADYGGIKKIRLP---SDDVWLPDLVLYNNADGDFAIVHM----TKLL-LDYTGKI 116
Query: 287 LYSMRLTIKANCPMSLRNFPMDTQSCPLILGSYAYPIEKLVYHWTPGKSISFVPGMAISQ 346
+++ K+ C + + +FP D Q+C + LG + Y G +S P
Sbjct: 117 MWTPPAIFKSYCEIIVTHFPFDQQNCTMKLGIWTY----------DGTKVSISP------ 160
Query: 347 FDFISSPKRNFTFKRREGEFSL----------------------LQVNFNLKRHRGYFVI 384
S + + + GE+ + + +F ++R YFV+
Sbjct: 161 ----ESDRPDLSTFMESGEWVMKDYRGWKHWVYYTCCPDTPYLDITYHFIMQRIPLYFVV 216
Query: 385 QVYVPCVLIVVLSWVSFWI 403
V +PC+L L+ + F++
Sbjct: 217 NVIIPCLLFSFLTVLVFYL 235
>pdb|4AQ5|A Chain A, Gating Movement In Acetylcholine Receptor Analysed By
Time- Resolved Electron Cryo-Microscopy (Closed Class)
pdb|4AQ5|D Chain D, Gating Movement In Acetylcholine Receptor Analysed By
Time- Resolved Electron Cryo-Microscopy (Closed Class)
pdb|4AQ9|A Chain A, Gating Movement In Acetylcholine Receptor Analysed By
Time-Resolved Electron Cryo-Microscopy (Open Class)
pdb|4AQ9|D Chain D, Gating Movement In Acetylcholine Receptor Analysed By
Time-Resolved Electron Cryo-Microscopy (Open Class)
Length = 461
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 57/259 (22%), Positives = 102/259 (39%), Gaps = 57/259 (22%)
Query: 174 TLVLNNLLKNYQSSEPPNHGKGEPTIIKTNMLIRSMGPISEIDMDYSMDCYFRQYWRDSR 233
T ++ NLL+NY P I + + + + E++ + RQ W D R
Sbjct: 29 TRLVANLLENYNKVIRPVEHHTHFVDITVGLQLIQLINVDEVNQIVETNVRLRQQWIDVR 88
Query: 234 LSF----MGPINNLSLSIKMLEKIWRPDTYILN---GKQSYVHTITVPNKLLRINQDGDI 286
L + G I + L + +W PD + N G + VH KLL ++ G I
Sbjct: 89 LRWNPADYGGIKKIRLP---SDDVWLPDLVLYNNADGDFAIVHM----TKLL-LDYTGKI 140
Query: 287 LYSMRLTIKANCPMSLRNFPMDTQSCPLILGSYAYPIEKLVYHWTPGKSISFVPGMAISQ 346
+++ K+ C + + +FP D Q+C + LG + Y G +S P
Sbjct: 141 MWTPPAIFKSYCEIIVTHFPFDQQNCTMKLGIWTY----------DGTKVSISP------ 184
Query: 347 FDFISSPKRNFTFKRREGEFSL----------------------LQVNFNLKRHRGYFVI 384
S + + + GE+ + + +F ++R YFV+
Sbjct: 185 ----ESDRPDLSTFMESGEWVMKDYRGWKHWVYYTCCPDTPYLDITYHFIMQRIPLYFVV 240
Query: 385 QVYVPCVLIVVLSWVSFWI 403
V +PC+L L+ + F++
Sbjct: 241 NVIIPCLLFSFLTVLVFYL 259
>pdb|2BG9|E Chain E, Refined Structure Of The Nicotinic Acetylcholine Receptor
At 4a Resolution
Length = 370
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/240 (18%), Positives = 98/240 (40%), Gaps = 6/240 (2%)
Query: 176 VLNNLLKNYQSSEPPNHGKGEPTIIKTNMLIRSMGPISEIDMDYSMDCYFRQYWRDSRLS 235
++ LL +Y P + + + ++ ++E + + + + W D RLS
Sbjct: 6 LIEKLLGDYDKRIKPAKTLDHVIDVTLKLTLTNLISLNEKEEALTTNVWIEIQWNDYRLS 65
Query: 236 F-MGPINNLSLSIKMLEKIWRPDTYILNGKQSYVHTITVPNKLLRINQDGDILYSMRLTI 294
+ + L E +W PD + N N L + DG + +
Sbjct: 66 WNTSEYEGIDLVRIPSELLWLPDVVLENNVDGQFEVAYYANVL--VYNDGSMYWLPPAIY 123
Query: 295 KANCPMSLRNFPMDTQSCPLILGSYAYPIEKLVYHWTPGKSISFVPGMAISQFDFISSP- 353
++ CP+++ FP D Q+C L+ S Y ++ + + I ++ P
Sbjct: 124 RSTCPIAVTYFPFDWQNCSLVFRSQTYNAHEVNLQLSAEEGIDPEDFTENGEWTIRHRPA 183
Query: 354 KRNFTFKRREGEFSLLQVNFNL--KRHRGYFVIQVYVPCVLIVVLSWVSFWIHREATSDR 411
K+N+ ++ + + ++ F L +R +++I + PCVLI L + +++ +A +
Sbjct: 184 KKNYNWQLTKDDIDFQEIIFFLIIQRKPLFYIINIIAPCVLISSLVVLVYFLPAQAGGQK 243
>pdb|2BG9|C Chain C, Refined Structure Of The Nicotinic Acetylcholine Receptor
At 4a Resolution
Length = 369
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/238 (22%), Positives = 101/238 (42%), Gaps = 12/238 (5%)
Query: 176 VLNNLL--KNYQSSEPPNHGKGEPTIIKTNMLIRSMGPISEIDMDYSMDCYFRQYWRDSR 233
++N+LL Y P E I ++ + ++ + E D + + + W D R
Sbjct: 7 LINDLLIVNKYNKHVRPVKHNNEVVNIALSLTLSNLISLKETDETLTTNVWMDHAWYDHR 66
Query: 234 LSF-MGPINNLSLSIKMLEKIWRPDTYILNGKQSYVHTITVPNKLLRINQDGDILYSMRL 292
L++ +++S+ E IW PD + N + N L+R N G + +
Sbjct: 67 LTWNASEYSDISILRLRPELIWIPDIVLQNNNDGQYNVAYFCNVLVRPN--GYVTWLPPA 124
Query: 293 TIKANCPMSLRNFPMDTQSCPLILGSYAYPIEKLVYHWTPGKSISFVPGMAISQFDFISS 352
+++CP+++ FP D Q+C L + Y ++ G +++ I
Sbjct: 125 IFRSSCPINVLYFPFDWQNCSLKFTALNYNANEISMDLIIDPEAFTENG----EWEIIHK 180
Query: 353 P-KRNFTFKRREGEFSLLQVNFNL--KRHRGYFVIQVYVPCVLIVVLSWVSFWIHREA 407
P K+N + + V F L +R ++VI PCVLI L+ ++F++ E+
Sbjct: 181 PAKKNIYGDKFPNGTNYQDVTFYLIIRRKPLFYVINFITPCVLISFLAALAFYLPAES 238
>pdb|4AQ5|E Chain E, Gating Movement In Acetylcholine Receptor Analysed By
Time- Resolved Electron Cryo-Microscopy (Closed Class)
pdb|4AQ9|E Chain E, Gating Movement In Acetylcholine Receptor Analysed By
Time-Resolved Electron Cryo-Microscopy (Open Class)
Length = 488
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/248 (18%), Positives = 100/248 (40%), Gaps = 15/248 (6%)
Query: 176 VLNNLLKNYQSSEPPNHGKGEPTIIKTNMLIRSMGPISEIDMDYSMDCYFRQYWRDSRLS 235
++ LL +Y P + + + ++ ++E + + + + W D RLS
Sbjct: 6 LIEKLLGDYDKRIKPAKTLDHVIDVTLKLTLTNLISLNEKEEALTTNVWIEIQWNDYRLS 65
Query: 236 F-MGPINNLSLSIKMLEKIWRPDTYILNGKQSYVHTITVPNKLLRINQDGDILYSMRLTI 294
+ + L E +W PD + N N L + DG + +
Sbjct: 66 WNTSEYEGIDLVRIPSELLWLPDVVLENNVDGQFEVAYYANVL--VYNDGSMYWLPPAIY 123
Query: 295 KANCPMSLRNFPMDTQSCPLILGSYAYPIEKLVYHWTPGKSISFVPGMAISQFDFISS-- 352
++ CP+++ FP D Q+C L+ S Y ++ + + V + I DF +
Sbjct: 124 RSTCPIAVTYFPFDWQNCSLVFRSQTYNAHEVNLQLSAEEG-EVVEWIHIDPEDFTENGE 182
Query: 353 -------PKRNFTFKRREGEFSLLQVNFNL--KRHRGYFVIQVYVPCVLIVVLSWVSFWI 403
K+N+ ++ + + ++ F L +R +++I + PCVLI L + +++
Sbjct: 183 WTIRHRPAKKNYNWQLTKDDIDFQEIIFFLIIQRKPLFYIINIIAPCVLISSLVVLVYFL 242
Query: 404 HREATSDR 411
+A +
Sbjct: 243 PAQAGGQK 250
>pdb|4AQ5|C Chain C, Gating Movement In Acetylcholine Receptor Analysed By
Time- Resolved Electron Cryo-Microscopy (Closed Class)
pdb|4AQ9|C Chain C, Gating Movement In Acetylcholine Receptor Analysed By
Time-Resolved Electron Cryo-Microscopy (Open Class)
Length = 522
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 57/257 (22%), Positives = 104/257 (40%), Gaps = 35/257 (13%)
Query: 176 VLNNLL--KNYQSSEPPNHGKGEPTIIKTNMLIRSMGPISEIDMDYSMDCYFRQYWRDSR 233
++N+LL Y P E I ++ + ++ + E D + + + W D R
Sbjct: 28 LINDLLIVNKYNKHVRPVKHNNEVVNIALSLTLSNLISLKETDETLTTNVWMDHAWYDHR 87
Query: 234 LSF-MGPINNLSLSIKMLEKIWRPDTYILNGKQSYVHTITVPNKLLRINQDGDILYSMRL 292
L++ +++S+ E IW PD + N + N L+R N G + +
Sbjct: 88 LTWNASEYSDISILRLRPELIWIPDIVLQNNNDGQYNVAYFCNVLVRPN--GYVTWLPPA 145
Query: 293 TIKANCPMSLRNFPMDTQSCPL-------------------ILGSYAYPIEKLVYHWTPG 333
+++CP+++ FP D Q+C L + YPIE W
Sbjct: 146 IFRSSCPINVLYFPFDWQNCSLKFTALNYNANEISMDLMTDTIDGKDYPIE-----WIII 200
Query: 334 KSISFVPGMAISQFDFISSP-KRNFTFKRREGEFSLLQVNFNL--KRHRGYFVIQVYVPC 390
+F +++ I P K+N + + V F L +R ++VI PC
Sbjct: 201 DPEAFTEN---GEWEIIHKPAKKNIYGDKFPNGTNYQDVTFYLIIRRKPLFYVINFITPC 257
Query: 391 VLIVVLSWVSFWIHREA 407
VLI L+ ++F++ E+
Sbjct: 258 VLISFLAALAFYLPAES 274
>pdb|2QC1|B Chain B, Crystal Structure Of The Extracellular Domain Of The
Nicotinic Acetylcholine Receptor 1 Subunit Bound To
Alpha-Bungarotoxin At 1.9 A Resolution
Length = 212
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/146 (22%), Positives = 61/146 (41%), Gaps = 9/146 (6%)
Query: 180 LLKNYQSSEPPNHGKGEPTIIKTNMLIRSMGPISEIDMDYSMDCYFRQYWRDSRLSF--- 236
L ++Y S P E + + + + + E++ + + +Q W D L +
Sbjct: 12 LFEDYSSVVRPVEDHREIVQVTVGLQLIQLINVDEVNQIVTTNVRLKQQWVDYNLKWNPD 71
Query: 237 -MGPINNLSLSIKMLEKIWRPDTYILNGKQSYVHTITVPNKLLRINQDGDILYSMRLTIK 295
G + + + EKIWRPD + N + LL + G I ++ K
Sbjct: 72 DYGGVKKIHIP---SEKIWRPDVVLYNNADGDFAIVKFTKVLL--DYTGHITWTPPAIFK 126
Query: 296 ANCPMSLRNFPMDTQSCPLILGSYAY 321
+ C + + +FP D Q+C + LG+ Y
Sbjct: 127 SYCEIIVTHFPFDEQNCSMKLGTRTY 152
>pdb|4AOD|A Chain A, Biomphalaria Glabrata Acetylcholine-Binding Protein Type 1
(Bgachbp1)
pdb|4AOD|B Chain B, Biomphalaria Glabrata Acetylcholine-Binding Protein Type 1
(Bgachbp1)
pdb|4AOD|C Chain C, Biomphalaria Glabrata Acetylcholine-Binding Protein Type 1
(Bgachbp1)
pdb|4AOD|D Chain D, Biomphalaria Glabrata Acetylcholine-Binding Protein Type 1
(Bgachbp1)
pdb|4AOD|E Chain E, Biomphalaria Glabrata Acetylcholine-Binding Protein Type 1
(Bgachbp1)
Length = 205
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 53/106 (50%), Gaps = 14/106 (13%)
Query: 229 WRDSRLSFMGPINNLSLSIKMLEKIWRPDTYILNGKQSYVHTITVP----NKLLRINQDG 284
W+D L++ + + +IW PD +I + ++ P +KL R++QDG
Sbjct: 60 WKDRCLNWFNEFTSFKELTVPIAEIWTPDIFIFD-------SVGAPEIFSDKLARVSQDG 112
Query: 285 DILYSMRLTIKANCPMSLRNFPMDTQ-SCPLILGSYAYPIEKLVYH 329
+ Y +L ++ +CP++ + ++T +C L GS+ + ++L
Sbjct: 113 TVTYVPQLKVRLSCPLA--DLKLETGVTCSLKSGSWTHSTQELTLE 156
>pdb|1VRY|A Chain A, Second And Third Transmembrane Domains Of The Alpha-1
Subunit Of Human Glycine Receptor
Length = 76
Score = 38.1 bits (87), Expect = 0.012, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 26/40 (65%)
Query: 429 SRTDLPKVRYATALDWFLLMSFFYCIATILEFAAVHYFTK 468
SR LPKV Y A+D +L + + + +LE+AAV++ ++
Sbjct: 22 SRASLPKVSYVKAIDIWLAVCLLFVFSALLEYAAVNFVSR 61
>pdb|3IGQ|A Chain A, Crystal Structure Of The Extracellular Domain Of A
Bacterial Pentameric Ligand-Gated Ion Channel
pdb|3IGQ|B Chain B, Crystal Structure Of The Extracellular Domain Of A
Bacterial Pentameric Ligand-Gated Ion Channel
pdb|3IGQ|C Chain C, Crystal Structure Of The Extracellular Domain Of A
Bacterial Pentameric Ligand-Gated Ion Channel
pdb|3IGQ|D Chain D, Crystal Structure Of The Extracellular Domain Of A
Bacterial Pentameric Ligand-Gated Ion Channel
pdb|3IGQ|E Chain E, Crystal Structure Of The Extracellular Domain Of A
Bacterial Pentameric Ligand-Gated Ion Channel
pdb|3IGQ|F Chain F, Crystal Structure Of The Extracellular Domain Of A
Bacterial Pentameric Ligand-Gated Ion Channel
Length = 201
Score = 35.8 bits (81), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 23/123 (18%), Positives = 51/123 (41%), Gaps = 4/123 (3%)
Query: 189 PPNHGKGEPTIIKTNMLIRSMGPISEIDMDYSMDCYFRQYWRDSRLSFMGPINNLSLSIK 248
PP EP + T + + + + + ++ + W+D RL+F + + +
Sbjct: 7 PPPPIADEPLTVNTGIYLIECYSLDDKAETFKVNAFLSLSWKDRRLAFDPVRSGVRVKTY 66
Query: 249 MLEKIWRPDTYILNGKQSYVHTITVPNKLLRINQDGDILYSMRLTIKANCPMSLRNFPMD 308
E IW P+ +N + + + + ++ DG + Y R + + P+ R D
Sbjct: 67 EPEAIWIPEIRFVNVENARDADVVD----ISVSPDGTVQYLERFSARVLSPLDGRRTESD 122
Query: 309 TQS 311
+Q+
Sbjct: 123 SQT 125
>pdb|4AOE|A Chain A, Biomphalaria Glabrata Acetylcholine-Binding Protein Type 2
(Bgachbp2)
pdb|4AOE|B Chain B, Biomphalaria Glabrata Acetylcholine-Binding Protein Type 2
(Bgachbp2)
pdb|4AOE|C Chain C, Biomphalaria Glabrata Acetylcholine-Binding Protein Type 2
(Bgachbp2)
pdb|4AOE|D Chain D, Biomphalaria Glabrata Acetylcholine-Binding Protein Type 2
(Bgachbp2)
pdb|4AOE|E Chain E, Biomphalaria Glabrata Acetylcholine-Binding Protein Type 2
(Bgachbp2)
Length = 205
Score = 35.4 bits (80), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 16/105 (15%)
Query: 229 WRDSRLSFMGPI---NNLSLSIKMLEKIWRPDTYILN--GKQSYVHTITVPNKLLRINQD 283
W+D LS+ N L+L K IW P + N GK +H+ ++L+R+ +D
Sbjct: 60 WKDRSLSWSNECTTFNELTLPSKY---IWLPHIEVYNSIGKPG-IHS----DQLVRVYKD 111
Query: 284 GDILYSMRLTIKANCPMSLRNFPMDT-QSCPLILGSYAYPIEKLV 327
G + + + TI+ +C +L N + +C L G + Y + LV
Sbjct: 112 GTVTFVPQYTIRFSC--ALENVTTEQGAACTLKFGPWTYDVRDLV 154
>pdb|4GB7|A Chain A, Putative 6-Aminohexanoate-Dimer Hydrolase From Bacillus
Anthracis
Length = 422
Score = 32.7 bits (73), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Query: 159 LKEKKKHDLMIGKNITLVLNNLLKNYQSSEPPNHGKGEPTIIKTNMLIRSMGPISEIDMD 218
L + K ++ N LV Y SEP HG + T +I+S+ + ID++
Sbjct: 105 LDDNKTDAFVVVHNGQLVYERYFNGYNESEP--HGXASLAKVFTGAIIQSLAEENRIDLE 162
Query: 219 YSMDCYFRQ 227
+ D Y ++
Sbjct: 163 KTADTYIKE 171
>pdb|4ALX|A Chain A, Crystal Structure Of Ls-Achbp Complexed With The Potent
Nachr Antagonist Dhbe
pdb|4ALX|B Chain B, Crystal Structure Of Ls-Achbp Complexed With The Potent
Nachr Antagonist Dhbe
pdb|4ALX|C Chain C, Crystal Structure Of Ls-Achbp Complexed With The Potent
Nachr Antagonist Dhbe
pdb|4ALX|D Chain D, Crystal Structure Of Ls-Achbp Complexed With The Potent
Nachr Antagonist Dhbe
pdb|4ALX|E Chain E, Crystal Structure Of Ls-Achbp Complexed With The Potent
Nachr Antagonist Dhbe
pdb|4ALX|F Chain F, Crystal Structure Of Ls-Achbp Complexed With The Potent
Nachr Antagonist Dhbe
pdb|4ALX|G Chain G, Crystal Structure Of Ls-Achbp Complexed With The Potent
Nachr Antagonist Dhbe
pdb|4ALX|H Chain H, Crystal Structure Of Ls-Achbp Complexed With The Potent
Nachr Antagonist Dhbe
pdb|4ALX|I Chain I, Crystal Structure Of Ls-Achbp Complexed With The Potent
Nachr Antagonist Dhbe
pdb|4ALX|J Chain J, Crystal Structure Of Ls-Achbp Complexed With The Potent
Nachr Antagonist Dhbe
Length = 229
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 31/164 (18%), Positives = 74/164 (45%), Gaps = 22/164 (13%)
Query: 168 MIGKNITLVLNNLLKNYQSSEPPN---HGKGEPTIIKTNMLIRSMGPISEIDMDYSMDCY 224
++ ++L ++L N + + P+ + P + ++ ++ ++EI + + +
Sbjct: 13 IVQACLSLDRADILYNIRQTSRPDVIPTQRDRPVAVSVSLKFINILEVNEITNEVDVVFW 72
Query: 225 FRQYWRDSRLSFMGPINNLSLSIKMLEKIWRPDTYILNGKQSYVHTITVPN----KLLRI 280
+ W D L++ + +S+ + +W PD N I+ P +L R+
Sbjct: 73 QQTTWSDRTLAWNSSHSPDQVSVP-ISSLWVPDLAAYNA-------ISKPEVLTPQLARV 124
Query: 281 NQDGDILYSMRLTIKANCPMSLRNFPMDTQS---CPLILGSYAY 321
DG++LY + + +C +S +DT+S C + +GS+ +
Sbjct: 125 VSDGEVLYMPSIRQRFSCDVS----GVDTESGATCRIKIGSWTH 164
>pdb|1I9B|A Chain A, X-Ray Structure Of Acetylcholine Binding Protein (Achbp)
pdb|1I9B|B Chain B, X-Ray Structure Of Acetylcholine Binding Protein (Achbp)
pdb|1I9B|C Chain C, X-Ray Structure Of Acetylcholine Binding Protein (Achbp)
pdb|1I9B|D Chain D, X-Ray Structure Of Acetylcholine Binding Protein (Achbp)
pdb|1I9B|E Chain E, X-Ray Structure Of Acetylcholine Binding Protein (Achbp)
Length = 217
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 30/153 (19%), Positives = 69/153 (45%), Gaps = 22/153 (14%)
Query: 179 NLLKNYQSSEPPN---HGKGEPTIIKTNMLIRSMGPISEIDMDYSMDCYFRQYWRDSRLS 235
++L N + + P+ + P + ++ ++ ++EI + + + + W D L+
Sbjct: 12 DILYNIRQTSRPDVIPTQRDRPVAVSVSLKFINILEVNEITNEVDVVFWQQTTWSDRTLA 71
Query: 236 FMGPINNLSLSIKMLEKIWRPDTYILNGKQSYVHTITVPN----KLLRINQDGDILYSMR 291
+ + +S+ + +W PD N I+ P +L R+ DG++LY
Sbjct: 72 WNSSHSPDQVSVP-ISSLWVPDLAAYNA-------ISKPEVLTPQLARVVSDGEVLYMPS 123
Query: 292 LTIKANCPMSLRNFPMDTQS---CPLILGSYAY 321
+ + +C +S +DT+S C + +GS+ +
Sbjct: 124 IRQRFSCDVS----GVDTESGATCRIKIGSWTH 152
>pdb|1UX2|A Chain A, X-Ray Structure Of Acetylcholine Binding Protein (Achbp)
pdb|1UX2|B Chain B, X-Ray Structure Of Acetylcholine Binding Protein (Achbp)
pdb|1UX2|C Chain C, X-Ray Structure Of Acetylcholine Binding Protein (Achbp)
pdb|1UX2|D Chain D, X-Ray Structure Of Acetylcholine Binding Protein (Achbp)
pdb|1UX2|E Chain E, X-Ray Structure Of Acetylcholine Binding Protein (Achbp)
pdb|1UX2|F Chain F, X-Ray Structure Of Acetylcholine Binding Protein (Achbp)
pdb|1UX2|G Chain G, X-Ray Structure Of Acetylcholine Binding Protein (Achbp)
pdb|1UX2|H Chain H, X-Ray Structure Of Acetylcholine Binding Protein (Achbp)
pdb|1UX2|I Chain I, X-Ray Structure Of Acetylcholine Binding Protein (Achbp)
pdb|1UX2|J Chain J, X-Ray Structure Of Acetylcholine Binding Protein (Achbp)
Length = 212
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 30/153 (19%), Positives = 69/153 (45%), Gaps = 22/153 (14%)
Query: 179 NLLKNYQSSEPPN---HGKGEPTIIKTNMLIRSMGPISEIDMDYSMDCYFRQYWRDSRLS 235
++L N + + P+ + P + ++ ++ ++EI + + + + W D L+
Sbjct: 7 DILYNIRQTSRPDVIPTQRDRPVAVSVSLKFINILEVNEITNEVDVVFWQQTTWSDRTLA 66
Query: 236 FMGPINNLSLSIKMLEKIWRPDTYILNGKQSYVHTITVPN----KLLRINQDGDILYSMR 291
+ + +S+ + +W PD N I+ P +L R+ DG++LY
Sbjct: 67 WNSSHSPDQVSVP-ISSLWVPDLAAYNA-------ISKPEVLTPQLARVVSDGEVLYMPS 118
Query: 292 LTIKANCPMSLRNFPMDTQS---CPLILGSYAY 321
+ + +C +S +DT+S C + +GS+ +
Sbjct: 119 IRQRFSCDVS----GVDTESGATCRIKIGSWTH 147
>pdb|1UW6|A Chain A, X-Ray Structure Of Acetylcholine Binding Protein (Achbp)
In Complex With Nicotine
pdb|1UW6|B Chain B, X-Ray Structure Of Acetylcholine Binding Protein (Achbp)
In Complex With Nicotine
pdb|1UW6|C Chain C, X-Ray Structure Of Acetylcholine Binding Protein (Achbp)
In Complex With Nicotine
pdb|1UW6|D Chain D, X-Ray Structure Of Acetylcholine Binding Protein (Achbp)
In Complex With Nicotine
pdb|1UW6|E Chain E, X-Ray Structure Of Acetylcholine Binding Protein (Achbp)
In Complex With Nicotine
pdb|1UW6|F Chain F, X-Ray Structure Of Acetylcholine Binding Protein (Achbp)
In Complex With Nicotine
pdb|1UW6|G Chain G, X-Ray Structure Of Acetylcholine Binding Protein (Achbp)
In Complex With Nicotine
pdb|1UW6|H Chain H, X-Ray Structure Of Acetylcholine Binding Protein (Achbp)
In Complex With Nicotine
pdb|1UW6|I Chain I, X-Ray Structure Of Acetylcholine Binding Protein (Achbp)
In Complex With Nicotine
pdb|1UW6|J Chain J, X-Ray Structure Of Acetylcholine Binding Protein (Achbp)
In Complex With Nicotine
pdb|1UW6|K Chain K, X-Ray Structure Of Acetylcholine Binding Protein (Achbp)
In Complex With Nicotine
pdb|1UW6|L Chain L, X-Ray Structure Of Acetylcholine Binding Protein (Achbp)
In Complex With Nicotine
pdb|1UW6|M Chain M, X-Ray Structure Of Acetylcholine Binding Protein (Achbp)
In Complex With Nicotine
pdb|1UW6|N Chain N, X-Ray Structure Of Acetylcholine Binding Protein (Achbp)
In Complex With Nicotine
pdb|1UW6|O Chain O, X-Ray Structure Of Acetylcholine Binding Protein (Achbp)
In Complex With Nicotine
pdb|1UW6|P Chain P, X-Ray Structure Of Acetylcholine Binding Protein (Achbp)
In Complex With Nicotine
pdb|1UW6|Q Chain Q, X-Ray Structure Of Acetylcholine Binding Protein (Achbp)
In Complex With Nicotine
pdb|1UW6|R Chain R, X-Ray Structure Of Acetylcholine Binding Protein (Achbp)
In Complex With Nicotine
pdb|1UW6|S Chain S, X-Ray Structure Of Acetylcholine Binding Protein (Achbp)
In Complex With Nicotine
pdb|1UW6|T Chain T, X-Ray Structure Of Acetylcholine Binding Protein (Achbp)
In Complex With Nicotine
Length = 211
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 30/153 (19%), Positives = 69/153 (45%), Gaps = 22/153 (14%)
Query: 179 NLLKNYQSSEPPN---HGKGEPTIIKTNMLIRSMGPISEIDMDYSMDCYFRQYWRDSRLS 235
++L N + + P+ + P + ++ ++ ++EI + + + + W D L+
Sbjct: 6 DILYNIRQTSRPDVIPTQRDRPVAVSVSLKFINILEVNEITNEVDVVFWQQTTWSDRTLA 65
Query: 236 FMGPINNLSLSIKMLEKIWRPDTYILNGKQSYVHTITVPN----KLLRINQDGDILYSMR 291
+ + +S+ + +W PD N I+ P +L R+ DG++LY
Sbjct: 66 WNSSHSPDQVSVP-ISSLWVPDLAAYNA-------ISKPEVLTPQLARVVSDGEVLYMPS 117
Query: 292 LTIKANCPMSLRNFPMDTQS---CPLILGSYAY 321
+ + +C +S +DT+S C + +GS+ +
Sbjct: 118 IRQRFSCDVS----GVDTESGATCRIKIGSWTH 146
>pdb|1UV6|A Chain A, X-Ray Structure Of Acetylcholine Binding Protein (Achbp)
In Complex With Carbamylcholine
pdb|1UV6|B Chain B, X-Ray Structure Of Acetylcholine Binding Protein (Achbp)
In Complex With Carbamylcholine
pdb|1UV6|C Chain C, X-Ray Structure Of Acetylcholine Binding Protein (Achbp)
In Complex With Carbamylcholine
pdb|1UV6|D Chain D, X-Ray Structure Of Acetylcholine Binding Protein (Achbp)
In Complex With Carbamylcholine
pdb|1UV6|E Chain E, X-Ray Structure Of Acetylcholine Binding Protein (Achbp)
In Complex With Carbamylcholine
pdb|1UV6|F Chain F, X-Ray Structure Of Acetylcholine Binding Protein (Achbp)
In Complex With Carbamylcholine
pdb|1UV6|G Chain G, X-Ray Structure Of Acetylcholine Binding Protein (Achbp)
In Complex With Carbamylcholine
pdb|1UV6|H Chain H, X-Ray Structure Of Acetylcholine Binding Protein (Achbp)
In Complex With Carbamylcholine
pdb|1UV6|I Chain I, X-Ray Structure Of Acetylcholine Binding Protein (Achbp)
In Complex With Carbamylcholine
pdb|1UV6|J Chain J, X-Ray Structure Of Acetylcholine Binding Protein (Achbp)
In Complex With Carbamylcholine
pdb|1YI5|A Chain A, Crystal Structure Of The A-Cobratoxin-Achbp Complex
pdb|1YI5|B Chain B, Crystal Structure Of The A-Cobratoxin-Achbp Complex
pdb|1YI5|C Chain C, Crystal Structure Of The A-Cobratoxin-Achbp Complex
pdb|1YI5|D Chain D, Crystal Structure Of The A-Cobratoxin-Achbp Complex
pdb|1YI5|E Chain E, Crystal Structure Of The A-Cobratoxin-Achbp Complex
pdb|3U8J|B Chain B, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3531
(1-(Pyridin-3-Yl)-1,4- Diazepane)
pdb|3U8J|A Chain A, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3531
(1-(Pyridin-3-Yl)-1,4- Diazepane)
pdb|3U8J|C Chain C, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3531
(1-(Pyridin-3-Yl)-1,4- Diazepane)
pdb|3U8J|D Chain D, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3531
(1-(Pyridin-3-Yl)-1,4- Diazepane)
pdb|3U8J|E Chain E, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3531
(1-(Pyridin-3-Yl)-1,4- Diazepane)
pdb|3U8J|F Chain F, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3531
(1-(Pyridin-3-Yl)-1,4- Diazepane)
pdb|3U8J|G Chain G, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3531
(1-(Pyridin-3-Yl)-1,4- Diazepane)
pdb|3U8J|J Chain J, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3531
(1-(Pyridin-3-Yl)-1,4- Diazepane)
pdb|3U8J|I Chain I, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3531
(1-(Pyridin-3-Yl)-1,4- Diazepane)
pdb|3U8J|H Chain H, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3531
(1-(Pyridin-3-Yl)-1,4- Diazepane)
pdb|3U8K|A Chain A, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3573
(1-(5-Ethoxypyridin-3-Yl)-1, 4-Diazepane)
pdb|3U8K|B Chain B, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3573
(1-(5-Ethoxypyridin-3-Yl)-1, 4-Diazepane)
pdb|3U8K|C Chain C, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3573
(1-(5-Ethoxypyridin-3-Yl)-1, 4-Diazepane)
pdb|3U8K|D Chain D, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3573
(1-(5-Ethoxypyridin-3-Yl)-1, 4-Diazepane)
pdb|3U8K|E Chain E, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3573
(1-(5-Ethoxypyridin-3-Yl)-1, 4-Diazepane)
pdb|3U8K|F Chain F, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3573
(1-(5-Ethoxypyridin-3-Yl)-1, 4-Diazepane)
pdb|3U8K|G Chain G, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3573
(1-(5-Ethoxypyridin-3-Yl)-1, 4-Diazepane)
pdb|3U8K|H Chain H, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3573
(1-(5-Ethoxypyridin-3-Yl)-1, 4-Diazepane)
pdb|3U8K|I Chain I, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3573
(1-(5-Ethoxypyridin-3-Yl)-1, 4-Diazepane)
pdb|3U8K|J Chain J, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3573
(1-(5-Ethoxypyridin-3-Yl)-1, 4-Diazepane)
pdb|3U8K|K Chain K, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3573
(1-(5-Ethoxypyridin-3-Yl)-1, 4-Diazepane)
pdb|3U8K|L Chain L, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3573
(1-(5-Ethoxypyridin-3-Yl)-1, 4-Diazepane)
pdb|3U8K|M Chain M, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3573
(1-(5-Ethoxypyridin-3-Yl)-1, 4-Diazepane)
pdb|3U8K|N Chain N, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3573
(1-(5-Ethoxypyridin-3-Yl)-1, 4-Diazepane)
pdb|3U8K|O Chain O, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3573
(1-(5-Ethoxypyridin-3-Yl)-1, 4-Diazepane)
pdb|3U8K|P Chain P, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3573
(1-(5-Ethoxypyridin-3-Yl)-1, 4-Diazepane)
pdb|3U8K|Q Chain Q, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3573
(1-(5-Ethoxypyridin-3-Yl)-1, 4-Diazepane)
pdb|3U8K|R Chain R, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3573
(1-(5-Ethoxypyridin-3-Yl)-1, 4-Diazepane)
pdb|3U8K|S Chain S, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3573
(1-(5-Ethoxypyridin-3-Yl)-1, 4-Diazepane)
pdb|3U8K|T Chain T, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3573
(1-(5-Ethoxypyridin-3-Yl)-1, 4-Diazepane)
pdb|3U8L|A Chain A, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3570
(1-(5-Phenylpyridin-3-Yl)-1, 4-Diazepane)
pdb|3U8L|B Chain B, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3570
(1-(5-Phenylpyridin-3-Yl)-1, 4-Diazepane)
pdb|3U8L|C Chain C, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3570
(1-(5-Phenylpyridin-3-Yl)-1, 4-Diazepane)
pdb|3U8L|D Chain D, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3570
(1-(5-Phenylpyridin-3-Yl)-1, 4-Diazepane)
pdb|3U8L|E Chain E, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3570
(1-(5-Phenylpyridin-3-Yl)-1, 4-Diazepane)
pdb|3U8L|F Chain F, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3570
(1-(5-Phenylpyridin-3-Yl)-1, 4-Diazepane)
pdb|3U8L|G Chain G, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3570
(1-(5-Phenylpyridin-3-Yl)-1, 4-Diazepane)
pdb|3U8L|H Chain H, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3570
(1-(5-Phenylpyridin-3-Yl)-1, 4-Diazepane)
pdb|3U8L|I Chain I, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3570
(1-(5-Phenylpyridin-3-Yl)-1, 4-Diazepane)
pdb|3U8L|J Chain J, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3570
(1-(5-Phenylpyridin-3-Yl)-1, 4-Diazepane)
pdb|3U8M|A Chain A, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3920
(1-(6-Bromopyridin-3-Yl)-1, 4-Diazepane)
pdb|3U8M|B Chain B, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3920
(1-(6-Bromopyridin-3-Yl)-1, 4-Diazepane)
pdb|3U8M|C Chain C, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3920
(1-(6-Bromopyridin-3-Yl)-1, 4-Diazepane)
pdb|3U8M|D Chain D, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3920
(1-(6-Bromopyridin-3-Yl)-1, 4-Diazepane)
pdb|3U8M|E Chain E, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3920
(1-(6-Bromopyridin-3-Yl)-1, 4-Diazepane)
pdb|3U8M|F Chain F, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3920
(1-(6-Bromopyridin-3-Yl)-1, 4-Diazepane)
pdb|3U8M|G Chain G, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3920
(1-(6-Bromopyridin-3-Yl)-1, 4-Diazepane)
pdb|3U8M|H Chain H, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3920
(1-(6-Bromopyridin-3-Yl)-1, 4-Diazepane)
pdb|3U8M|I Chain I, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3920
(1-(6-Bromopyridin-3-Yl)-1, 4-Diazepane)
pdb|3U8M|J Chain J, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3920
(1-(6-Bromopyridin-3-Yl)-1, 4-Diazepane)
pdb|3U8M|K Chain K, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3920
(1-(6-Bromopyridin-3-Yl)-1, 4-Diazepane)
pdb|3U8M|L Chain L, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3920
(1-(6-Bromopyridin-3-Yl)-1, 4-Diazepane)
pdb|3U8M|M Chain M, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3920
(1-(6-Bromopyridin-3-Yl)-1, 4-Diazepane)
pdb|3U8M|N Chain N, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3920
(1-(6-Bromopyridin-3-Yl)-1, 4-Diazepane)
pdb|3U8M|O Chain O, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3920
(1-(6-Bromopyridin-3-Yl)-1, 4-Diazepane)
pdb|3U8M|P Chain P, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3920
(1-(6-Bromopyridin-3-Yl)-1, 4-Diazepane)
pdb|3U8M|Q Chain Q, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3920
(1-(6-Bromopyridin-3-Yl)-1, 4-Diazepane)
pdb|3U8M|R Chain R, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3920
(1-(6-Bromopyridin-3-Yl)-1, 4-Diazepane)
pdb|3U8M|S Chain S, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3920
(1-(6-Bromopyridin-3-Yl)-1, 4-Diazepane)
pdb|3U8M|T Chain T, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3920
(1-(6-Bromopyridin-3-Yl)-1, 4-Diazepane)
pdb|3U8N|A Chain A, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3950
(1-(6-Bromo-5-Ethoxypyridin- 3-Yl)-1,4-Diazepane)
pdb|3U8N|B Chain B, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3950
(1-(6-Bromo-5-Ethoxypyridin- 3-Yl)-1,4-Diazepane)
pdb|3U8N|C Chain C, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3950
(1-(6-Bromo-5-Ethoxypyridin- 3-Yl)-1,4-Diazepane)
pdb|3U8N|D Chain D, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3950
(1-(6-Bromo-5-Ethoxypyridin- 3-Yl)-1,4-Diazepane)
pdb|3U8N|E Chain E, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3950
(1-(6-Bromo-5-Ethoxypyridin- 3-Yl)-1,4-Diazepane)
pdb|3U8N|F Chain F, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3950
(1-(6-Bromo-5-Ethoxypyridin- 3-Yl)-1,4-Diazepane)
pdb|3U8N|G Chain G, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3950
(1-(6-Bromo-5-Ethoxypyridin- 3-Yl)-1,4-Diazepane)
pdb|3U8N|H Chain H, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3950
(1-(6-Bromo-5-Ethoxypyridin- 3-Yl)-1,4-Diazepane)
pdb|3U8N|I Chain I, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3950
(1-(6-Bromo-5-Ethoxypyridin- 3-Yl)-1,4-Diazepane)
pdb|3U8N|J Chain J, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3950
(1-(6-Bromo-5-Ethoxypyridin- 3-Yl)-1,4-Diazepane)
pdb|3U8N|K Chain K, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3950
(1-(6-Bromo-5-Ethoxypyridin- 3-Yl)-1,4-Diazepane)
pdb|3U8N|L Chain L, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3950
(1-(6-Bromo-5-Ethoxypyridin- 3-Yl)-1,4-Diazepane)
pdb|3U8N|M Chain M, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3950
(1-(6-Bromo-5-Ethoxypyridin- 3-Yl)-1,4-Diazepane)
pdb|3U8N|N Chain N, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3950
(1-(6-Bromo-5-Ethoxypyridin- 3-Yl)-1,4-Diazepane)
pdb|3U8N|O Chain O, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3950
(1-(6-Bromo-5-Ethoxypyridin- 3-Yl)-1,4-Diazepane)
pdb|3U8N|P Chain P, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3950
(1-(6-Bromo-5-Ethoxypyridin- 3-Yl)-1,4-Diazepane)
pdb|3U8N|Q Chain Q, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3950
(1-(6-Bromo-5-Ethoxypyridin- 3-Yl)-1,4-Diazepane)
pdb|3U8N|R Chain R, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3950
(1-(6-Bromo-5-Ethoxypyridin- 3-Yl)-1,4-Diazepane)
pdb|3U8N|S Chain S, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3950
(1-(6-Bromo-5-Ethoxypyridin- 3-Yl)-1,4-Diazepane)
pdb|3U8N|T Chain T, Crystal Structure Of The Acetylcholine Binding Protein
(Achbp) From Lymnaea Stagnalis In Complex With Ns3950
(1-(6-Bromo-5-Ethoxypyridin- 3-Yl)-1,4-Diazepane)
pdb|3ZDG|A Chain A, Crystal Structure Of Ls-achbp Complexed With
Carbamoylcholine Analogue 3-(dimethylamino)butyl
Dimethylcarbamate (dmabc)
pdb|3ZDG|B Chain B, Crystal Structure Of Ls-achbp Complexed With
Carbamoylcholine Analogue 3-(dimethylamino)butyl
Dimethylcarbamate (dmabc)
pdb|3ZDG|C Chain C, Crystal Structure Of Ls-achbp Complexed With
Carbamoylcholine Analogue 3-(dimethylamino)butyl
Dimethylcarbamate (dmabc)
pdb|3ZDG|D Chain D, Crystal Structure Of Ls-achbp Complexed With
Carbamoylcholine Analogue 3-(dimethylamino)butyl
Dimethylcarbamate (dmabc)
pdb|3ZDG|E Chain E, Crystal Structure Of Ls-achbp Complexed With
Carbamoylcholine Analogue 3-(dimethylamino)butyl
Dimethylcarbamate (dmabc)
pdb|3ZDG|F Chain F, Crystal Structure Of Ls-achbp Complexed With
Carbamoylcholine Analogue 3-(dimethylamino)butyl
Dimethylcarbamate (dmabc)
pdb|3ZDG|G Chain G, Crystal Structure Of Ls-achbp Complexed With
Carbamoylcholine Analogue 3-(dimethylamino)butyl
Dimethylcarbamate (dmabc)
pdb|3ZDG|H Chain H, Crystal Structure Of Ls-achbp Complexed With
Carbamoylcholine Analogue 3-(dimethylamino)butyl
Dimethylcarbamate (dmabc)
pdb|3ZDG|I Chain I, Crystal Structure Of Ls-achbp Complexed With
Carbamoylcholine Analogue 3-(dimethylamino)butyl
Dimethylcarbamate (dmabc)
pdb|3ZDG|J Chain J, Crystal Structure Of Ls-achbp Complexed With
Carbamoylcholine Analogue 3-(dimethylamino)butyl
Dimethylcarbamate (dmabc)
pdb|3ZDG|K Chain K, Crystal Structure Of Ls-achbp Complexed With
Carbamoylcholine Analogue 3-(dimethylamino)butyl
Dimethylcarbamate (dmabc)
pdb|3ZDG|L Chain L, Crystal Structure Of Ls-achbp Complexed With
Carbamoylcholine Analogue 3-(dimethylamino)butyl
Dimethylcarbamate (dmabc)
pdb|3ZDG|M Chain M, Crystal Structure Of Ls-achbp Complexed With
Carbamoylcholine Analogue 3-(dimethylamino)butyl
Dimethylcarbamate (dmabc)
pdb|3ZDG|N Chain N, Crystal Structure Of Ls-achbp Complexed With
Carbamoylcholine Analogue 3-(dimethylamino)butyl
Dimethylcarbamate (dmabc)
pdb|3ZDG|O Chain O, Crystal Structure Of Ls-achbp Complexed With
Carbamoylcholine Analogue 3-(dimethylamino)butyl
Dimethylcarbamate (dmabc)
pdb|3ZDG|P Chain P, Crystal Structure Of Ls-achbp Complexed With
Carbamoylcholine Analogue 3-(dimethylamino)butyl
Dimethylcarbamate (dmabc)
pdb|3ZDG|Q Chain Q, Crystal Structure Of Ls-achbp Complexed With
Carbamoylcholine Analogue 3-(dimethylamino)butyl
Dimethylcarbamate (dmabc)
pdb|3ZDG|R Chain R, Crystal Structure Of Ls-achbp Complexed With
Carbamoylcholine Analogue 3-(dimethylamino)butyl
Dimethylcarbamate (dmabc)
pdb|3ZDG|S Chain S, Crystal Structure Of Ls-achbp Complexed With
Carbamoylcholine Analogue 3-(dimethylamino)butyl
Dimethylcarbamate (dmabc)
pdb|3ZDG|T Chain T, Crystal Structure Of Ls-achbp Complexed With
Carbamoylcholine Analogue 3-(dimethylamino)butyl
Dimethylcarbamate (dmabc)
pdb|3ZDH|A Chain A, Crystal Structure Of Ls-achbp Complexed With
Carbamoylcholine Analogue N,n-dimethyl-4-(1-methyl-1h-
Imidazol-2-yloxy)butan-2-amine
pdb|3ZDH|B Chain B, Crystal Structure Of Ls-achbp Complexed With
Carbamoylcholine Analogue N,n-dimethyl-4-(1-methyl-1h-
Imidazol-2-yloxy)butan-2-amine
pdb|3ZDH|C Chain C, Crystal Structure Of Ls-achbp Complexed With
Carbamoylcholine Analogue N,n-dimethyl-4-(1-methyl-1h-
Imidazol-2-yloxy)butan-2-amine
pdb|3ZDH|D Chain D, Crystal Structure Of Ls-achbp Complexed With
Carbamoylcholine Analogue N,n-dimethyl-4-(1-methyl-1h-
Imidazol-2-yloxy)butan-2-amine
pdb|3ZDH|E Chain E, Crystal Structure Of Ls-achbp Complexed With
Carbamoylcholine Analogue N,n-dimethyl-4-(1-methyl-1h-
Imidazol-2-yloxy)butan-2-amine
pdb|3ZDH|F Chain F, Crystal Structure Of Ls-achbp Complexed With
Carbamoylcholine Analogue N,n-dimethyl-4-(1-methyl-1h-
Imidazol-2-yloxy)butan-2-amine
pdb|3ZDH|G Chain G, Crystal Structure Of Ls-achbp Complexed With
Carbamoylcholine Analogue N,n-dimethyl-4-(1-methyl-1h-
Imidazol-2-yloxy)butan-2-amine
pdb|3ZDH|H Chain H, Crystal Structure Of Ls-achbp Complexed With
Carbamoylcholine Analogue N,n-dimethyl-4-(1-methyl-1h-
Imidazol-2-yloxy)butan-2-amine
pdb|3ZDH|I Chain I, Crystal Structure Of Ls-achbp Complexed With
Carbamoylcholine Analogue N,n-dimethyl-4-(1-methyl-1h-
Imidazol-2-yloxy)butan-2-amine
pdb|3ZDH|J Chain J, Crystal Structure Of Ls-achbp Complexed With
Carbamoylcholine Analogue N,n-dimethyl-4-(1-methyl-1h-
Imidazol-2-yloxy)butan-2-amine
Length = 210
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 30/153 (19%), Positives = 69/153 (45%), Gaps = 22/153 (14%)
Query: 179 NLLKNYQSSEPPN---HGKGEPTIIKTNMLIRSMGPISEIDMDYSMDCYFRQYWRDSRLS 235
++L N + + P+ + P + ++ ++ ++EI + + + + W D L+
Sbjct: 5 DILYNIRQTSRPDVIPTQRDRPVAVSVSLKFINILEVNEITNEVDVVFWQQTTWSDRTLA 64
Query: 236 FMGPINNLSLSIKMLEKIWRPDTYILNGKQSYVHTITVPN----KLLRINQDGDILYSMR 291
+ + +S+ + +W PD N I+ P +L R+ DG++LY
Sbjct: 65 WNSSHSPDQVSVP-ISSLWVPDLAAYNA-------ISKPEVLTPQLARVVSDGEVLYMPS 116
Query: 292 LTIKANCPMSLRNFPMDTQS---CPLILGSYAY 321
+ + +C +S +DT+S C + +GS+ +
Sbjct: 117 IRQRFSCDVS----GVDTESGATCRIKIGSWTH 145
>pdb|2ZJU|A Chain A, Crystal Structure Of Lymnaea Stagnalis Acetylcholine
Binding Protein (Ls-Achbp) Complexed With Imidacloprid
pdb|2ZJU|B Chain B, Crystal Structure Of Lymnaea Stagnalis Acetylcholine
Binding Protein (Ls-Achbp) Complexed With Imidacloprid
pdb|2ZJU|C Chain C, Crystal Structure Of Lymnaea Stagnalis Acetylcholine
Binding Protein (Ls-Achbp) Complexed With Imidacloprid
pdb|2ZJU|D Chain D, Crystal Structure Of Lymnaea Stagnalis Acetylcholine
Binding Protein (Ls-Achbp) Complexed With Imidacloprid
pdb|2ZJU|E Chain E, Crystal Structure Of Lymnaea Stagnalis Acetylcholine
Binding Protein (Ls-Achbp) Complexed With Imidacloprid
pdb|2ZJV|A Chain A, Crystal Structure Of Lymnaea Stagnalis Acetylcholine
Binding Protein (Ls-Achbp) Complexed With Clothianidin
pdb|2ZJV|B Chain B, Crystal Structure Of Lymnaea Stagnalis Acetylcholine
Binding Protein (Ls-Achbp) Complexed With Clothianidin
pdb|2ZJV|C Chain C, Crystal Structure Of Lymnaea Stagnalis Acetylcholine
Binding Protein (Ls-Achbp) Complexed With Clothianidin
pdb|2ZJV|D Chain D, Crystal Structure Of Lymnaea Stagnalis Acetylcholine
Binding Protein (Ls-Achbp) Complexed With Clothianidin
pdb|2ZJV|E Chain E, Crystal Structure Of Lymnaea Stagnalis Acetylcholine
Binding Protein (Ls-Achbp) Complexed With Clothianidin
Length = 214
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 30/153 (19%), Positives = 69/153 (45%), Gaps = 22/153 (14%)
Query: 179 NLLKNYQSSEPPN---HGKGEPTIIKTNMLIRSMGPISEIDMDYSMDCYFRQYWRDSRLS 235
++L N + + P+ + P + ++ ++ ++EI + + + + W D L+
Sbjct: 9 DILYNIRQTSRPDVIPTQRDRPVAVSVSLKFINILEVNEITNEVDVVFWQQTTWSDRTLA 68
Query: 236 FMGPINNLSLSIKMLEKIWRPDTYILNGKQSYVHTITVPN----KLLRINQDGDILYSMR 291
+ + +S+ + +W PD N I+ P +L R+ DG++LY
Sbjct: 69 WDSSHSPDQVSVP-ISSLWVPDLAAYNA-------ISKPEVLTPQLARVVSDGEVLYMPS 120
Query: 292 LTIKANCPMSLRNFPMDTQS---CPLILGSYAY 321
+ + +C +S +DT+S C + +GS+ +
Sbjct: 121 IRQRFSCDVS----GVDTESGATCRIKIGSWTH 149
>pdb|2E3D|A Chain A, Crystal Structure Of E. Coli Glucose-1-Phosphate
Uridylyltransferase
pdb|2E3D|B Chain B, Crystal Structure Of E. Coli Glucose-1-Phosphate
Uridylyltransferase
pdb|2E3D|C Chain C, Crystal Structure Of E. Coli Glucose-1-Phosphate
Uridylyltransferase
pdb|2E3D|D Chain D, Crystal Structure Of E. Coli Glucose-1-Phosphate
Uridylyltransferase
Length = 302
Score = 28.5 bits (62), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 70 INEEVNLKISSSNDTENELDHDFEADFLLEKHIKQ 104
I E V + SS N EN D FE + +LEK +K+
Sbjct: 54 ITEIVLVTHSSKNSIENHFDTSFELEAMLEKRVKR 88
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,701,072
Number of Sequences: 62578
Number of extensions: 527809
Number of successful extensions: 1058
Number of sequences better than 100.0: 45
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 964
Number of HSP's gapped (non-prelim): 51
length of query: 488
length of database: 14,973,337
effective HSP length: 103
effective length of query: 385
effective length of database: 8,527,803
effective search space: 3283204155
effective search space used: 3283204155
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (25.0 bits)