Query psy12313
Match_columns 488
No_of_seqs 200 out of 1659
Neff 7.1
Searched_HMMs 46136
Date Fri Aug 16 15:53:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12313.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12313hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00860 LIC Cation transport 100.0 3.3E-59 7.2E-64 496.6 27.8 314 169-486 27-348 (459)
2 KOG3643|consensus 100.0 2.6E-57 5.7E-62 457.3 19.2 298 170-468 32-331 (459)
3 KOG3644|consensus 100.0 5.2E-53 1.1E-57 442.5 22.4 300 168-469 35-341 (457)
4 KOG3646|consensus 100.0 6.8E-54 1.5E-58 434.2 13.4 312 168-485 22-347 (486)
5 KOG3645|consensus 100.0 3.4E-51 7.3E-56 433.9 26.8 306 171-481 28-344 (449)
6 KOG3642|consensus 100.0 7.7E-50 1.7E-54 405.6 16.4 298 169-467 40-338 (466)
7 PF02931 Neur_chan_LBD: Neurot 100.0 1.1E-36 2.4E-41 292.8 17.9 203 173-379 1-217 (217)
8 PF02932 Neur_chan_memb: Neuro 99.5 1.5E-15 3.3E-20 142.1 -1.5 81 386-466 1-81 (237)
9 PF14494 DUF4436: Domain of un 94.4 0.11 2.4E-06 51.5 7.1 149 299-461 96-250 (256)
10 PF06554 Olfactory_mark: Olfac 18.4 57 0.0012 29.0 1.0 17 241-259 65-81 (151)
No 1
>TIGR00860 LIC Cation transporter family protein. selective while glycine receptors are anion selective).
Probab=100.00 E-value=3.3e-59 Score=496.57 Aligned_cols=314 Identities=33% Similarity=0.633 Sum_probs=282.0
Q ss_pred ccchHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEEEEEeecccccccccccceeeEEEEEEEcCCcccc----CCCceEE
Q psy12313 169 IGKNITLVLNNLLKNYQSSEPPNHGKGEPTIIKTNMLIRSMGPISEIDMDYSMDCYFRQYWRDSRLSFM----GPINNLS 244 (488)
Q Consensus 169 ~~~~~~~Ll~~Ll~~Yd~~~rP~~~~~~pt~V~v~i~I~~I~~VDE~~~t~~v~~~l~~~W~D~RL~Wn----~~i~~i~ 244 (488)
.++.+++|+++|+++||+.+||+ +.++|++|++++.+.+|.++||++|++++++|++++|+|+||+|| +|++.+.
T Consensus 27 ~~~~~~~L~~~Ll~~Yd~~~RPv-~~~~~v~V~~~i~l~~i~~vde~~q~~t~~~wl~~~W~D~rL~Wnp~~y~~i~~i~ 105 (459)
T TIGR00860 27 LKEVERKLLDELLKNYDARVRPV-FGGPPVTVSFNLFLRSIMDVDEKNMDYTTNIWLRQEWTDERLQWNPEEYPGVTLVR 105 (459)
T ss_pred cChHHHHHHHHHHhcCCCCcCCC-CCCCCEEEEEEEEEEEecccccccceEEEeeeeeeEEeCCccCCCCccCCCceecc
Confidence 35678899999999999999999 679999999999999999999999999999999999999999998 7899999
Q ss_pred ecccccccccccCeeeecccccceeeeeecceeEEEccCCcEEEecccceeeccCCCCCCCCCCCccccccccccccccc
Q psy12313 245 LSIKMLEKIWRPDTYILNGKQSYVHTITVPNKLLRINQDGDILYSMRLTIKANCPMSLRNFPMDTQSCPLILGSYAYPIE 324 (488)
Q Consensus 245 l~~~~~~~IW~PdI~~~Ns~~~~~~~~~~~~~~v~V~~dG~V~~~~~~~~~~~C~~dl~~FPFD~Q~C~L~~~Sw~y~~~ 324 (488)
++ .++||+||++++|++++..+.....+..+++++||+|.|.+|..+++.|++|+++||||+|+|+++||||+|+.+
T Consensus 106 ~~---~~~IW~PDi~l~N~~~~~~~~~~~~~~~v~~~~~G~V~~~~~~~~~~~C~~d~~~FPfD~Q~C~l~fgSw~y~~~ 182 (459)
T TIGR00860 106 TP---DDSIWVPDIFFYNEKDARFHGITMTNVLVRIHPNGSVLYSPRITLTLACPMDLRNFPFDVQNCSLKFESWGYTTN 182 (459)
T ss_pred cc---ccccccCcEEeecCccccccccccCceEEEEcCCCcEEEecCceEEecccceeccCCCCCccccEEEhhhccccc
Confidence 99 899999999999999887665555566677777999999999999999999999999999999999999999999
Q ss_pred ceeeeeCCCceeec--cCCccccceEeecCCc-cceeecccCCCeeEEEEEEEEEeccceeEEEEehhhHHHHHhhheee
Q psy12313 325 KLVYHWTPGKSISF--VPGMAISQFDFISSPK-RNFTFKRREGEFSLLQVNFNLKRHRGYFVIQVYVPCVLIVVLSWVSF 401 (488)
Q Consensus 325 ev~l~~~~~~~v~~--~~~~~~~ew~l~~~~~-~~~~~~~~~~~ys~l~~~i~LkR~~~~y~~~iilP~~livllsl~sF 401 (488)
++++.+..++.+.. .....++||++.+... +.....++++.|+++.+++.++|++.||.+++++|++++++++|++|
T Consensus 183 ~i~l~~~~~~~v~~~~~~~~~~~eW~l~~~~~~~~~~~~~~~~~y~~l~~~~~l~R~~~~y~~~l~iP~~li~~ls~~sF 262 (459)
T TIGR00860 183 DIKLEWKEQGAVQVDDSLFISLPEFELLGVYGTRYCTSETNTGEYPCLTFSFVLRRRPLYYLLQLYIPSILIVILSWVSF 262 (459)
T ss_pred eEEEEECCCCceEechhhccccCceEEEeeeeeeeEecccCCCCcCeEEEEEEEEEcccceeeeehHHHHHHHHHhheeE
Confidence 99999876543322 2334789999998443 33345567889999999999999999999999999999999999999
Q ss_pred eccCCCCCCeEeehHHHHHHHHHHHHHHhccCCCCCCcChhhHHHHHHHHHHHHHHHHHHHhhheeccCC-CCChhhHHH
Q psy12313 402 WIHREATSDRIGLGITTVLTLSTISLDSRTDLPKVRYATALDWFLLMSFFYCIATILEFAAVHYFTKLCY-PGYPSGFIE 480 (488)
Q Consensus 402 wLp~~s~~~Ri~L~it~LLs~~~~~~~v~~~LP~~sylt~l~~~l~~~~i~v~~sli~~viV~~l~~~~~-~~~~~~~l~ 480 (488)
|+|+++.++|++++++++|++++++..+++.+|+.||+|+++.|+.+|+++++++++++++|.++.++++ ..++..+++
T Consensus 263 ~Lp~~a~~eRi~L~it~lLs~~vf~~~v~~~lP~~S~vpli~~y~~~~~~~v~~sli~tv~V~~~~~~~~~~~~r~~~l~ 342 (459)
T TIGR00860 263 WLPADASGARVSLGITTLLTMTTFSSGVRESLPAVSYVKAIDVYFAVCMAFVFLALLETAFVNYVHHKDPAQGKRHLLLE 342 (459)
T ss_pred ecCCCCCCCcEEEEEEHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHHHHHHHHHHHhheeEEccCCCCCceehHHh
Confidence 9999977999999999999999999999999999999999999999999999999999999998866654 345888899
Q ss_pred hccccc
Q psy12313 481 RLPVIG 486 (488)
Q Consensus 481 ~Lp~i~ 486 (488)
.||++.
T Consensus 343 ~l~~~l 348 (459)
T TIGR00860 343 RCAWRL 348 (459)
T ss_pred hchHHh
Confidence 998864
No 2
>KOG3643|consensus
Probab=100.00 E-value=2.6e-57 Score=457.34 Aligned_cols=298 Identities=39% Similarity=0.803 Sum_probs=284.8
Q ss_pred cchHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEEEEEeecccccccccccceeeEEEEEEEcCCcccc-CCCceEEeccc
Q psy12313 170 GKNITLVLNNLLKNYQSSEPPNHGKGEPTIIKTNMLIRSMGPISEIDMDYSMDCYFRQYWRDSRLSFM-GPINNLSLSIK 248 (488)
Q Consensus 170 ~~~~~~Ll~~Ll~~Yd~~~rP~~~~~~pt~V~v~i~I~~I~~VDE~~~t~~v~~~l~~~W~D~RL~Wn-~~i~~i~l~~~ 248 (488)
.......+++|+++||.++||..+ |.|+.|.+.+.|.+|..|.|.++.+++.+++++.|+||||+|+ ++++++.++..
T Consensus 32 ~~~~~~~ld~l~~~yd~~lRP~fG-G~pv~Vgi~i~VaSI~~vSEV~MDyTlt~y~rq~W~D~RLay~~~~~~slTl~~~ 110 (459)
T KOG3643|consen 32 TQLVSSVLDRLLNGYDYRLRPNFG-GPPVDVGITIHVASIDAVSEVNMDYTLTMYLRQTWRDPRLAYSSKNIDSLTLDVR 110 (459)
T ss_pred hhhHHHHHHHHhhcCceecCCCCC-CCCeEEEEEEEEeeechhccccchhhhhhhhhhhhcCcccccCCCCCceEEEchh
Confidence 356788999999999999999998 8999999999999999999999999999999999999999999 88899999988
Q ss_pred ccccccccCeeeecccccceeeeeecceeEEEccCCcEEEecccceeeccCCCCCCCCCCCcccccccccccccccceee
Q psy12313 249 MLEKIWRPDTYILNGKQSYVHTITVPNKLLRINQDGDILYSMRLTIKANCPMSLRNFPMDTQSCPLILGSYAYPIEKLVY 328 (488)
Q Consensus 249 ~~~~IW~PdI~~~Ns~~~~~~~~~~~~~~v~V~~dG~V~~~~~~~~~~~C~~dl~~FPFD~Q~C~L~~~Sw~y~~~ev~l 328 (488)
+.++||.||.++-|+++..+|....++..+|+++||+|.++.|++.++.|+||+++||+|+|+|+|.++||.|+.+++.+
T Consensus 111 ~~~~LWvPDTff~N~KkSf~H~~T~~N~~lRl~~dGtVlys~RlT~Ta~C~MDL~~fPmD~Q~C~LeiESYGYt~~DI~y 190 (459)
T KOG3643|consen 111 YVDKLWVPDTFFPNSKKSFFHDVTTHNSLLRLHPDGTVLYSIRLTVTAACPMDLKLFPMDSQNCKLEIESYGYTTDDIEY 190 (459)
T ss_pred hhhccccCceecccCcccccceeeecceEEEEcCCCeEEEEEEEEEEEecccccccCCCcccceeEEEEecccccccEEE
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCc-eeeccCCccccceEeecCCccceeecccCCCeeEEEEEEEEEeccceeEEEEehhhHHHHHhhheeeeccCCC
Q psy12313 329 HWTPGK-SISFVPGMAISQFDFISSPKRNFTFKRREGEFSLLQVNFNLKRHRGYFVIQVYVPCVLIVVLSWVSFWIHREA 407 (488)
Q Consensus 329 ~~~~~~-~v~~~~~~~~~ew~l~~~~~~~~~~~~~~~~ys~l~~~i~LkR~~~~y~~~iilP~~livllsl~sFwLp~~s 407 (488)
.|.+++ .+...++.+++++.+.+............|.|+++.+.|.++|+.+||++++++|+.+++++||++||+..++
T Consensus 191 ~W~~g~~av~~~e~i~LpqFti~~~~~~s~~~~~sTG~Y~RL~l~F~l~Rnigf~ilQ~y~PS~LiVilSWVSFWin~~a 270 (459)
T KOG3643|consen 191 YWSKGDNAVKGDEKIELPQFTITEYHVTSRLVSFSTGNYSRLSLSFQLRRNIGFYILQTYIPSTLIVILSWVSFWINRDA 270 (459)
T ss_pred EEcCCCccccceeeeeccceEEEEEEEEEEEEEEccccceeEEEEEEEEeeccEEEEeeecchhhhhHHhHhHhhhcccc
Confidence 999765 6667778899999999987766666778999999999999999999999999999999999999999999999
Q ss_pred CCCeEeehHHHHHHHHHHHHHHhccCCCCCCcChhhHHHHHHHHHHHHHHHHHHHhhheec
Q psy12313 408 TSDRIGLGITTVLTLSTISLDSRTDLPKVRYATALDWFLLMSFFYCIATILEFAAVHYFTK 468 (488)
Q Consensus 408 ~~~Ri~L~it~LLs~~~~~~~v~~~LP~~sylt~l~~~l~~~~i~v~~sli~~viV~~l~~ 468 (488)
.++|+.+|+|++|+|+.+....++.||+.||++++|+|+.+|++++|++++|.+.|+|+..
T Consensus 271 ~pARv~lGITTVLTMTTl~t~~n~slPrvSYVKAiDiYL~vCFvfVF~sLLEYA~V~Y~~~ 331 (459)
T KOG3643|consen 271 SPARVALGITTVLTMTTLMTSTNESLPRVSYVKAIDVYLGVCFVFVFLSLLEYAAVNYMFK 331 (459)
T ss_pred chhheeeceehHHhHHHHHhhhhccCCCccceeeehhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999854
No 3
>KOG3644|consensus
Probab=100.00 E-value=5.2e-53 Score=442.51 Aligned_cols=300 Identities=37% Similarity=0.702 Sum_probs=279.4
Q ss_pred cccchHHHHHHHHHhc-CCCCCCCCCCCCCcEEEEEEEEEeecccccccccccceeeEEEEEEEcCCccccC-C---C--
Q psy12313 168 MIGKNITLVLNNLLKN-YQSSEPPNHGKGEPTIIKTNMLIRSMGPISEIDMDYSMDCYFRQYWRDSRLSFMG-P---I-- 240 (488)
Q Consensus 168 ~~~~~~~~Ll~~Ll~~-Yd~~~rP~~~~~~pt~V~v~i~I~~I~~VDE~~~t~~v~~~l~~~W~D~RL~Wn~-~---i-- 240 (488)
.....+++++++|+.+ ||+..||....+.|+.|.+++.++.+.+++|.++.+++++++++.|.||||+.+. . +
T Consensus 35 ~~~~~~~~il~~LL~~~Yd~~~~P~~~~~~pv~V~v~i~vq~i~~ise~~mdf~~di~~~~~W~DpRL~~~~~~~~~~~~ 114 (457)
T KOG3644|consen 35 DLCTSDTDILDRLLGRNYDKRRPPNGKGGGPVSVSVEITVQSISSISEITMDFEVDIYFRERWQDPRLAYNALKFDHILP 114 (457)
T ss_pred ccccChHHHHHHHhhccCccccCCCccCCCceEEEEEEEEEeecceecccceEEeeeeeeeeEeCccccccccCcccccc
Confidence 3456788999999988 9999999987789999999999999999999999999999999999999998772 1 1
Q ss_pred ceEEecccccccccccCeeeecccccceeeeeecceeEEEccCCcEEEecccceeeccCCCCCCCCCCCccccccccccc
Q psy12313 241 NNLSLSIKMLEKIWRPDTYILNGKQSYVHTITVPNKLLRINQDGDILYSMRLTIKANCPMSLRNFPMDTQSCPLILGSYA 320 (488)
Q Consensus 241 ~~i~l~~~~~~~IW~PdI~~~Ns~~~~~~~~~~~~~~v~V~~dG~V~~~~~~~~~~~C~~dl~~FPFD~Q~C~L~~~Sw~ 320 (488)
-...+.. .++||+||++|.|++.+.+|....++..++|++||+|+++.|++++.+|+||+.+||+|+|+|.+.++||.
T Consensus 115 ~~~~l~~--~~~iW~Pd~~F~NsK~a~~H~~~~~N~ll~I~pnGtV~~~~Ri~l~~~C~m~L~~fP~D~Q~C~l~~eSy~ 192 (457)
T KOG3644|consen 115 CKLNLSL--KQKIWTPDTFFANSKSAEFHKSTKPNVLLMIFPNGTVWYSYRISLTLPCNMDLSKFPMDSQECKLQLESYA 192 (457)
T ss_pred ccccccc--CCceecCceeeecccceeeecCCCCceEEEEecCCeEEEEEEEEEeeceeeehhhCCCccceeeEEEEEec
Confidence 1122221 25699999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccceeeeeCCCceeeccCCccccceEeecCCccceeecccCCCeeEEEEEEEEEeccceeEEEEehhhHHHHHhhhee
Q psy12313 321 YPIEKLVYHWTPGKSISFVPGMAISQFDFISSPKRNFTFKRREGEFSLLQVNFNLKRHRGYFVIQVYVPCVLIVVLSWVS 400 (488)
Q Consensus 321 y~~~ev~l~~~~~~~v~~~~~~~~~ew~l~~~~~~~~~~~~~~~~ys~l~~~i~LkR~~~~y~~~iilP~~livllsl~s 400 (488)
|+.+++++.|.+.+++...++...+++.+.+.+..++...+..|.|++++++|+++|+.+||+++.++|+.++|++||++
T Consensus 193 Yn~~~v~~~W~~~~pv~~~~~i~LPdf~l~~~~~~~~~~~y~~G~~scL~v~~~f~R~~g~yllQ~YiPT~l~ViiSWvS 272 (457)
T KOG3644|consen 193 YNTDDVRLEWKEWNPVQVKKDIKLPDFSLPSFSTEKCTGSYTTGVYSCLRVTFTFKRRYGYYLLQTYIPTLLIVIISWVS 272 (457)
T ss_pred cccceEEEEecCCCCcccccCccCCceeccceeeccccccccCcceEEEEEEEEEEEeehhhhhHHHhhhHhhhhhhhhh
Confidence 99999999999988899999999999999998877777777899999999999999999999999999999999999999
Q ss_pred eeccCCCCCCeEeehHHHHHHHHHHHHHHhccCCCCCCcChhhHHHHHHHHHHHHHHHHHHHhhheecc
Q psy12313 401 FWIHREATSDRIGLGITTVLTLSTISLDSRTDLPKVRYATALDWFLLMSFFYCIATILEFAAVHYFTKL 469 (488)
Q Consensus 401 FwLp~~s~~~Ri~L~it~LLs~~~~~~~v~~~LP~~sylt~l~~~l~~~~i~v~~sli~~viV~~l~~~ 469 (488)
|||+++|.++|++||+++||++++....+...||++||++++|+|+++|++|+|++++|.++|+++.++
T Consensus 273 FWLd~~A~PARv~LgvtsLLtLttq~~~i~~~LP~VSYvKAIDVWm~~C~~FIF~sLlE~A~V~~~~~~ 341 (457)
T KOG3644|consen 273 FWLDPKAVPARVTLGVTSLLTLTTQSGGIRRNLPKVSYVKAIDVWMGVCMTFIFGSLLELAVVNYVGRR 341 (457)
T ss_pred eecCCCcccceEEehHHHHHHHHHHhcchhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 999999999999999999999999999999999999999999999999999999999999999999775
No 4
>KOG3646|consensus
Probab=100.00 E-value=6.8e-54 Score=434.18 Aligned_cols=312 Identities=21% Similarity=0.382 Sum_probs=277.7
Q ss_pred cccchHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEEEEEeecccccccccccceeeEEEEEEEcCCcccc----CCCceE
Q psy12313 168 MIGKNITLVLNNLLKNYQSSEPPNHGKGEPTIIKTNMLIRSMGPISEIDMDYSMDCYFRQYWRDSRLSFM----GPINNL 243 (488)
Q Consensus 168 ~~~~~~~~Ll~~Ll~~Yd~~~rP~~~~~~pt~V~v~i~I~~I~~VDE~~~t~~v~~~l~~~W~D~RL~Wn----~~i~~i 243 (488)
..+.+|.||+++|+++||+..||+.++++|++|.+++.+++|.++||++|.+++++|+.++|+|-+|+|| |||+.+
T Consensus 22 ~~s~~E~rL~~dL~~nYn~leRPV~N~Sepl~V~~~~~lqQIidVDEKnQvl~~naWl~y~W~D~~LrW~pseygnI~dv 101 (486)
T KOG3646|consen 22 MGSVAEYRLLTDLLENYNPLERPVANESEPLQVKLGVFLQQIIDVDEKNQVLSVNAWLQYQWNDYKLRWDPSEYGNITDI 101 (486)
T ss_pred hcCHHHHHHHHHHHhhcCccCCCccccCcCEEEEeeeeEeccCCCcccccchhhhhhhheeehhhhhccCHHHhCCceee
Confidence 4568899999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred EecccccccccccCeeeecccccceeeeeecceeEEEccCCcEEEecccceeeccCCCCCCCCCCCcccccccccccccc
Q psy12313 244 SLSIKMLEKIWRPDTYILNGKQSYVHTITVPNKLLRINQDGDILYSMRLTIKANCPMSLRNFPMDTQSCPLILGSYAYPI 323 (488)
Q Consensus 244 ~l~~~~~~~IW~PdI~~~Ns~~~~~~~~~~~~~~v~V~~dG~V~~~~~~~~~~~C~~dl~~FPFD~Q~C~L~~~Sw~y~~ 323 (488)
++| .++||+||+.+||+++++++.....+ +.++++|.|.|.||-.++++|.+|.+.||||.|.|.++||||+|+.
T Consensus 102 R~p---~~~iWkPDVLLYNSade~FDsTy~tN--~Vv~~tG~v~~vPPGIfk~sCkiDItwFPFD~Q~C~mKFGSWTY~G 176 (486)
T KOG3646|consen 102 RFP---GGNIWKPDVLLYNSADEQFDSTYKTN--YVVYSTGSVLWVPPGIFKSSCKIDITWFPFDDQVCYLKFGSWTYAG 176 (486)
T ss_pred ccC---CccccCCceeccccccccCCCcceee--EEEccCCeeeecCCceeeeeeEEEEEEecccccEEEEEeeeEEEcc
Confidence 999 78999999999999999877544434 6799999999999999999999999999999999999999999999
Q ss_pred cceeeeeCCCc-eeeccCCccccceEeecCCccce--eecccCCCeeEEEEEEEEEeccceeEEEEehhhHHHHHhhhee
Q psy12313 324 EKLVYHWTPGK-SISFVPGMAISQFDFISSPKRNF--TFKRREGEFSLLQVNFNLKRHRGYFVIQVYVPCVLIVVLSWVS 400 (488)
Q Consensus 324 ~ev~l~~~~~~-~v~~~~~~~~~ew~l~~~~~~~~--~~~~~~~~ys~l~~~i~LkR~~~~y~~~iilP~~livllsl~s 400 (488)
..++++....+ .++.+.+..+|||++.+....+. .+.+|.++|+.+.|.++++|+..||.+++++|+++++++++++
T Consensus 177 ~~lDL~~~~~~g~~Dls~yi~NGEW~Ll~~pakr~~~~y~cC~epY~dv~F~l~irRRTLyYgfNlIiP~lLIs~m~lLg 256 (486)
T KOG3646|consen 177 ILLDLRIDDEDGGIDLSTYIPNGEWDLLGTPAKREEKTYDCCPEPYPDVTFYLHIRRRTLYYGFNLIIPSLLISLMSLLG 256 (486)
T ss_pred eeeeeeeccccCCcchhhcccCCceeeccccccceeeecccCCCCcceeEEEEEEEehhhHHHHHHHHHHHHHHHHHHhc
Confidence 98888765443 46778889999999999877443 3455799999999999999999999999999999999999999
Q ss_pred eeccCCCCCCeEeehHHHHHHHHHHHHHHhccCCCCC-CcChhhHHHHHHHHHHHHHHHHHHHhhheecc------CCCC
Q psy12313 401 FWIHREATSDRIGLGITTVLTLSTISLDSRTDLPKVR-YATALDWFLLMSFFYCIATILEFAAVHYFTKL------CYPG 473 (488)
Q Consensus 401 FwLp~~s~~~Ri~L~it~LLs~~~~~~~v~~~LP~~s-ylt~l~~~l~~~~i~v~~sli~~viV~~l~~~------~~~~ 473 (488)
|-+|+++ ++++++.+|.+|+..+|+.++++..|++| .+|+++.|+..|++++.++++.+++|..++++ +.+.
T Consensus 257 FtlppD~-gEKitL~iTilLsvc~FL~mvse~~PpTSeaVPllg~fFsc~m~iv~~SvvfTv~vLn~h~R~p~~h~m~p~ 335 (486)
T KOG3646|consen 257 FTLPPDA-GEKITLQITILLSVCFFLTMVSEMTPPTSEAVPLLGAFFSCCMFIVAASVVFTVIVLNLHHRTPETHEMSPW 335 (486)
T ss_pred cccCccc-cceeeeeeehHHHHHHHHHHHHhhcCCccccccHHHHHHHHHHHHHHhhheeEEEEEeeeccCccccccCHH
Confidence 9999996 99999999999999999999999999998 67888999999999888888777665554333 2234
Q ss_pred ChhhHHHhcccc
Q psy12313 474 YPSGFIERLPVI 485 (488)
Q Consensus 474 ~~~~~l~~Lp~i 485 (488)
.+..|+..||-+
T Consensus 336 ~r~vfL~wlpwl 347 (486)
T KOG3646|consen 336 TRSVFLEWLPWL 347 (486)
T ss_pred HHHHHHHHHHHH
Confidence 456667777654
No 5
>KOG3645|consensus
Probab=100.00 E-value=3.4e-51 Score=433.91 Aligned_cols=306 Identities=19% Similarity=0.412 Sum_probs=269.5
Q ss_pred chHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEEEEEeecccccccccccceeeEEEEEEEcCCcccc----CCCceEEec
Q psy12313 171 KNITLVLNNLLKNYQSSEPPNHGKGEPTIIKTNMLIRSMGPISEIDMDYSMDCYFRQYWRDSRLSFM----GPINNLSLS 246 (488)
Q Consensus 171 ~~~~~Ll~~Ll~~Yd~~~rP~~~~~~pt~V~v~i~I~~I~~VDE~~~t~~v~~~l~~~W~D~RL~Wn----~~i~~i~l~ 246 (488)
.++++|..+|+++|++..||..+...+++|.+++.+.++.+|||++|.+++++|+.++|+|+||+|| ||++.+++|
T Consensus 28 ~~~~~l~~~l~~~Y~~~vrPv~~~~~~v~V~~~~~l~qii~VdE~~q~~t~~~wl~~~W~D~~L~Wnp~~~~~I~~i~vp 107 (449)
T KOG3645|consen 28 AAEERLLVDLFDKYNKLVRPVKNSSDPVTVNFGLVLYQIIEVDEKNQIMTTNVWLKQSWTDERLSWDPSDYGGITKIRVP 107 (449)
T ss_pred HHHHHHHHHHhhcccccCCccCCCCCcEEEEEEEEEEEEEeeccccceEEEEEEeeeEEeccCcccChHHcCCceEEEec
Confidence 4789999999999999999999988899999999999999999999999999999999999999999 899999999
Q ss_pred ccccccccccCeeeecccccceeeeeecceeEEEccCCcEEEecccceeeccCCCCCCCCCCCcccccccccccccccce
Q psy12313 247 IKMLEKIWRPDTYILNGKQSYVHTITVPNKLLRINQDGDILYSMRLTIKANCPMSLRNFPMDTQSCPLILGSYAYPIEKL 326 (488)
Q Consensus 247 ~~~~~~IW~PdI~~~Ns~~~~~~~~~~~~~~v~V~~dG~V~~~~~~~~~~~C~~dl~~FPFD~Q~C~L~~~Sw~y~~~ev 326 (488)
.++||+||++++|+++++.......+ +.++++|+|.|.+++.+++.|++|+++||||.|+|.++||||.|+.+++
T Consensus 108 ---~~~IW~Pdi~l~N~~~~~~~~~~~~~--v~v~~~G~V~~~~p~i~~s~C~idv~~FPfD~Q~C~i~f~sw~~~~~~i 182 (449)
T KOG3645|consen 108 ---SSKIWLPDIVLYNNADGDFEVEDLTN--VLVTYTGEVLWYPPAIYKSSCPIDVTYFPFDVQNCSIKFGSWTYDGSEV 182 (449)
T ss_pred ---HHHcCcCcEEEEecccccccccccce--EEEEECCEEEEEcceEEEeecccccccCCCcceeEeEEEeccccCcccc
Confidence 89999999999998887766544444 7899999999999999999999999999999999999999999999977
Q ss_pred e-eeeCCCce-eeccCCccccceEeecCCccceeecc--cCCCeeEEEEEEEEEeccceeEEEEehhhHHHHHhhheeee
Q psy12313 327 V-YHWTPGKS-ISFVPGMAISQFDFISSPKRNFTFKR--REGEFSLLQVNFNLKRHRGYFVIQVYVPCVLIVVLSWVSFW 402 (488)
Q Consensus 327 ~-l~~~~~~~-v~~~~~~~~~ew~l~~~~~~~~~~~~--~~~~ys~l~~~i~LkR~~~~y~~~iilP~~livllsl~sFw 402 (488)
. +....... .+......++||++.+.........+ +++.|+.+.|.+++||+|.||.+++++|+++++++++++||
T Consensus 183 ~~~~~~~~~~~~~~~~~~~n~eW~l~~~~~~~~~~~~~~~~~~~~~i~f~l~irRkplyY~v~liiP~~lis~l~il~ff 262 (449)
T KOG3645|consen 183 DGLDLNAQTIEVDLSDFIENSEWELLSVTVVREEKKYDCCPGPYSDITFTITIRRKPLYYTVNLIIPCFLISFLSILGFF 262 (449)
T ss_pred ceeeeccccccCCHHHcCCCCcEEEEeeeeEEeecccCCCCCceeEEEEEEEEEeccceEEEehhhhHHHHHHHHhheEE
Confidence 6 43322211 45566778999999998875544433 56779999999999999999999999999999999999999
Q ss_pred ccCCCCCCeEeehHHHHHHHHHHHHHHhccCCCCCC-cChhhHHHHHHHHHHHHHHHHHHHhhheeccCCCCC--hhhHH
Q psy12313 403 IHREATSDRIGLGITTVLTLSTISLDSRTDLPKVRY-ATALDWFLLMSFFYCIATILEFAAVHYFTKLCYPGY--PSGFI 479 (488)
Q Consensus 403 Lp~~s~~~Ri~L~it~LLs~~~~~~~v~~~LP~~sy-lt~l~~~l~~~~i~v~~sli~~viV~~l~~~~~~~~--~~~~l 479 (488)
+|+++..+|+.++++++|++++++..+++.+|++|. +|+++.|+.+++++++++++.++++..+++++.... ++.|.
T Consensus 263 lp~~~~~eki~L~it~Ll~~tv~ll~vs~~~P~ts~~iPLig~y~~~~m~~~~~sv~~tv~i~~~~~~~~~~~~~~~~~~ 342 (449)
T KOG3645|consen 263 LPSDSGTEKVTLGITVLLAMTVFLLLVSDKMPPTSSVIPLIGKYLLFTMVLVTISVVVTVVILNLHHRSPTTHPPMPPWV 342 (449)
T ss_pred ccCCCCCceEEEEHHHHHHHHHHHHHHHhhcCCccCcchHHHHHHHHHHHHHHHHHHHheeEEeeecccCCCCCCCchHH
Confidence 998775699999999999999999999999999997 899999999999999999999888877755554333 44444
Q ss_pred Hh
Q psy12313 480 ER 481 (488)
Q Consensus 480 ~~ 481 (488)
++
T Consensus 343 ~~ 344 (449)
T KOG3645|consen 343 RR 344 (449)
T ss_pred HH
Confidence 33
No 6
>KOG3642|consensus
Probab=100.00 E-value=7.7e-50 Score=405.62 Aligned_cols=298 Identities=52% Similarity=0.979 Sum_probs=280.4
Q ss_pred ccchHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEEEEEeecccccccccccceeeEEEEEEEcCCccccCCCceEEeccc
Q psy12313 169 IGKNITLVLNNLLKNYQSSEPPNHGKGEPTIIKTNMLIRSMGPISEIDMDYSMDCYFRQYWRDSRLSFMGPINNLSLSIK 248 (488)
Q Consensus 169 ~~~~~~~Ll~~Ll~~Yd~~~rP~~~~~~pt~V~v~i~I~~I~~VDE~~~t~~v~~~l~~~W~D~RL~Wn~~i~~i~l~~~ 248 (488)
...+..++++.|+++||+..||..+ +.|++|.++++|..+.-+++.+++++++++++++|.|+||++++..+.+.+...
T Consensus 40 ~~~~~T~iLn~lL~~YD~~lRP~~g-~~pt~v~~di~V~S~GPVSd~~meytid~~FrQ~W~D~RL~f~~~~~~L~Ln~~ 118 (466)
T KOG3642|consen 40 QDTDVTLILNNLLRGYDNKLRPDIG-SKPTEVETDIYVRSMGPVSDSDMEYTIDCFFRQTWVDDRLKFNGPQEALPLNSL 118 (466)
T ss_pred ccchHHHHHHHHHHhhhcccCCCCC-CCCcEEEEEEEEeecccccccCceEEEEEEEEEeehhhhhcccCcchhhccchh
Confidence 4477899999999999999999998 599999999999999999999999999999999999999999977777777666
Q ss_pred ccccccccCeeeecccccceeeeeecceeEEEccCCcEEEecccceeeccCCCCCCCCCCCcccccccccccccccceee
Q psy12313 249 MLEKIWRPDTYILNGKQSYVHTITVPNKLLRINQDGDILYSMRLTIKANCPMSLRNFPMDTQSCPLILGSYAYPIEKLVY 328 (488)
Q Consensus 249 ~~~~IW~PdI~~~Ns~~~~~~~~~~~~~~v~V~~dG~V~~~~~~~~~~~C~~dl~~FPFD~Q~C~L~~~Sw~y~~~ev~l 328 (488)
+..+||+||.+|.|++++..|....++..++|..||+|.|+.|.+..+.|+|++.+||.|.|.|+++|||+.|..+++.+
T Consensus 119 m~~kiW~PDTfF~NgkkS~~H~iT~pN~l~Ri~~dG~vlyt~RlTi~A~C~m~l~~fPMD~haCpl~fgSy~Y~~~evvY 198 (466)
T KOG3642|consen 119 MLSKIWIPDTFFRNGKKSYAHNITTPNKLVRIYIDGTVLYTMRLTIPAECPMHLARFPMDSHACPLKFGSYAYPGSEVVY 198 (466)
T ss_pred hhcCcccCCcccccCcccceeeccCCCceEEEeECCcceEEEEEeecccCcchhhcCCCCcccCcceecccCcCCCCEEE
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCc-eeeccCCccccceEeecCCccceeecccCCCeeEEEEEEEEEeccceeEEEEehhhHHHHHhhheeeeccCCC
Q psy12313 329 HWTPGK-SISFVPGMAISQFDFISSPKRNFTFKRREGEFSLLQVNFNLKRHRGYFVIQVYVPCVLIVVLSWVSFWIHREA 407 (488)
Q Consensus 329 ~~~~~~-~v~~~~~~~~~ew~l~~~~~~~~~~~~~~~~ys~l~~~i~LkR~~~~y~~~iilP~~livllsl~sFwLp~~s 407 (488)
.|..+. .+...+.+++.+++++|............|+|+.+++.|+|+|+-+|+++++++||+++++++|++||+..++
T Consensus 199 ~W~~~~VeV~~~~~~~L~Qf~l~g~~~~te~i~t~~gey~vmtv~F~L~R~~GYf~iQ~YlPC~ltViLSwVSFWinrEs 278 (466)
T KOG3642|consen 199 KWKKRSVEVNETDSWSLDQFDLLGVSVGTEDIKTSSGEYSVMTVYFHLSRRQGYFIIQIYLPCILTVVLSWVSFWINREA 278 (466)
T ss_pred EEecccEEEcCCCCccccceeeecccccccceEecCCCEEEEEEEEeccceeeEEEEeeccceeeeeeeeeeehhccccc
Confidence 998772 3444556789999999988766666678899999999999999999999999999999999999999999999
Q ss_pred CCCeEeehHHHHHHHHHHHHHHhccCCCCCCcChhhHHHHHHHHHHHHHHHHHHHhhhee
Q psy12313 408 TSDRIGLGITTVLTLSTISLDSRTDLPKVRYATALDWFLLMSFFYCIATILEFAAVHYFT 467 (488)
Q Consensus 408 ~~~Ri~L~it~LLs~~~~~~~v~~~LP~~sylt~l~~~l~~~~i~v~~sli~~viV~~l~ 467 (488)
.++|.++|+|++|+|+++.......+|+.+|.|++|+|+.+|++++|++++|++++||..
T Consensus 279 ~paRt~lGITtVLTMTtLs~~aR~slPKVsy~TAmD~fIavCf~FvFsaliEfa~vNYft 338 (466)
T KOG3642|consen 279 TPARTSLGITTVLTMTTLSTSARKSLPKVSYATALDVFIAVCFIFVFAALVEFAVVNYFT 338 (466)
T ss_pred cccceeeeeeeeeeeeeeeehhccCCCccccchhHHHHHHHHHHHHHHHHHHHHheeeee
Confidence 999999999999999999999999999999999999999999999999999999999987
No 7
>PF02931 Neur_chan_LBD: Neurotransmitter-gated ion-channel ligand binding domain ion channel family signature gamma-aminobutyric acid (GABA) receptor signature nicotinic acetylcholine receptor signature; InterPro: IPR006202 Neurotransmitter ligand-gated ion channels are transmembrane receptor-ion channel complexes that open transiently upon binding of specific ligands, allowing rapid transmission of signals at chemical synapses [, ]. Five of these ion channel receptor families have been shown to form a sequence-related superfamily: Nicotinic acetylcholine receptor (AchR), an excitatory cation channel in vertebrates and invertebrates; in vertebrate motor endplates it is composed of alpha, beta, gamma and delta/epsilon subunits; in neurons it is composed of alpha and non-alpha (or beta) subunits []. Glycine receptor, an inhibitory chloride ion channel composed of alpha and beta subunits []. Gamma-aminobutyric acid (GABA) receptor, an inhibitory chloride ion channel; at least four types of subunits (alpha, beta, gamma and delta) are known []. Serotonin 5HT3 receptor, of which there are seven major types (5HT3-5HT7) []. Glutamate receptor, an excitatory cation channel of which at least three types have been described (kainate, N-methyl-D-aspartate (NMDA) and quisqualate) []. These receptors possess a pentameric structure (made up of varying subunits), surrounding a central pore. All known sequences of subunits from neurotransmitter-gated ion-channels are structurally related. They are composed of a large extracellular glycosylated N-terminal ligand-binding domain, followed by three hydrophobic transmembrane regions which form the ionic channel, followed by an intracellular region of variable length. A fourth hydrophobic region is found at the C-terminal of the sequence [, ]. This entry presents the extracellular ligand binding domain of these ion channels. This domain forms a pentameric arrangement in the known structure. ; GO: 0005230 extracellular ligand-gated ion channel activity, 0006810 transport, 0016020 membrane; PDB: 1LXH_B 1ABT_B 1TOS_A 1LXG_B 1IDG_B 1TOR_A 1IDH_B 3IGQ_B 3TLU_B 3UU5_A ....
Probab=100.00 E-value=1.1e-36 Score=292.77 Aligned_cols=203 Identities=30% Similarity=0.609 Sum_probs=168.0
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCCCcEEEEEEEEEeecccccccccccceeeEEEEEEEcCCcccc----CCCceEEeccc
Q psy12313 173 ITLVLNNLLKNYQSSEPPNHGKGEPTIIKTNMLIRSMGPISEIDMDYSMDCYFRQYWRDSRLSFM----GPINNLSLSIK 248 (488)
Q Consensus 173 ~~~Ll~~Ll~~Yd~~~rP~~~~~~pt~V~v~i~I~~I~~VDE~~~t~~v~~~l~~~W~D~RL~Wn----~~i~~i~l~~~ 248 (488)
+++|+++||++||+.+||..+.++|+.|.+++.+.+|.++||.++++++++++.++|+|+||+|+ +|++.+.++
T Consensus 1 ~~~l~~~L~~~Yd~~~rP~~~~~~~~~V~v~~~~~~i~~v~e~~~~~~~~~~~~~~W~D~rL~w~~~~~~~i~~~~v~-- 78 (217)
T PF02931_consen 1 ETRLLKSLFDNYDKRVRPVKNEGDPTNVSVSIYLNSIVEVDESEQTFTVDGFIRLSWKDPRLKWNPSDYGGIESIRVP-- 78 (217)
T ss_dssp HHHHHHHHHHTS-STS-SSSSSSS-EEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEECCGE-STTTTTTESEEEEE--
T ss_pred ChHHHHHHHhcCCCCCCCCCCCCCeEEEEEEEEHhheeccccccchhhhhhhhceeccccccccChhhccCccccccc--
Confidence 57999999999999999997778999999999999999999999999999999999999999999 689999999
Q ss_pred ccccccccCeeeecccccceeeeeecceeEEEccCCcEEEecccceeeccCCCCCCCCCCCcccccccccccccccceee
Q psy12313 249 MLEKIWRPDTYILNGKQSYVHTITVPNKLLRINQDGDILYSMRLTIKANCPMSLRNFPMDTQSCPLILGSYAYPIEKLVY 328 (488)
Q Consensus 249 ~~~~IW~PdI~~~Ns~~~~~~~~~~~~~~v~V~~dG~V~~~~~~~~~~~C~~dl~~FPFD~Q~C~L~~~Sw~y~~~ev~l 328 (488)
.++||+||++++|....... .......+.|+++|+|.+..++.+++.|++|+++||||+|+|.++|+||.|+..++.+
T Consensus 79 -~~~iW~P~l~~~n~~~~~~~-~~~~~~~~~v~~~G~V~~~~~~~~~~~C~~d~~~fPfD~q~C~i~~~s~~~~~~~v~l 156 (217)
T PF02931_consen 79 -SSQIWTPDLYFYNSVSGSFE-ITEPNSNVRVYSDGTVRYSPRFTLTFSCPMDLRDFPFDSQNCSIKFGSWSYNSEEVQL 156 (217)
T ss_dssp -GGGS----EEETTBSSSEEE-CS-SSEEEEEETTSEEEEEEEEEEEEEECETTTSSSSSEEEEEEEEEESSSSTTTEEE
T ss_pred -ccceEeccccccccccccee-cccccccccccccchheeeecccccccccccccccccccceeEEEEecccccccceee
Confidence 78999999999995554432 2334567899999999999999999999999999999999999999999999999999
Q ss_pred eeCCCc-------eeeccCCccccceEeecCCccceee--cccCCC-eeEEEEEEEEEecc
Q psy12313 329 HWTPGK-------SISFVPGMAISQFDFISSPKRNFTF--KRREGE-FSLLQVNFNLKRHR 379 (488)
Q Consensus 329 ~~~~~~-------~v~~~~~~~~~ew~l~~~~~~~~~~--~~~~~~-ys~l~~~i~LkR~~ 379 (488)
.+.... ..........++|++.+........ ..+.+. |+.+.+.|.|+|+|
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~ew~~~~~~~~~~~~~~~~~~~~~ys~l~~~~~l~R~~ 217 (217)
T PF02931_consen 157 KWENKNPPIDENDEVSLSDFVSNSEWKIVSVTSTRRETTYGCYNEPTYSMLSFTFTLKRRP 217 (217)
T ss_dssp EESCSSS-TTSSTTTSCTTCETTSSEEEEEEEEEEEEEEESTSSSCSEEEEEEEEEEEEST
T ss_pred eecccCceeeeeccccHHHccccceEEEEeeEEEEEEEccCCcCCCCEeeEEEEEEEEECc
Confidence 987742 3334455678999999866543333 334444 99999999999986
No 8
>PF02932 Neur_chan_memb: Neurotransmitter-gated ion-channel transmembrane region ion channel family signature gamma-aminobutyric acid (GABA) receptor signature nicotinic acetylcholine receptor signature; InterPro: IPR006029 Neurotransmitter ligand-gated ion channels are transmembrane receptor-ion channel complexes that open transiently upon binding of specific ligands, allowing rapid transmission of signals at chemical synapses [, ]. Five of these ion channel receptor families have been shown to form a sequence-related superfamily: Nicotinic acetylcholine receptor (AchR), an excitatory cation channel in vertebrates and invertebrates; in vertebrate motor endplates it is composed of alpha, beta, gamma and delta/epsilon subunits; in neurons it is composed of alpha and non-alpha (or beta) subunits []. Glycine receptor, an inhibitory chloride ion channel composed of alpha and beta subunits []. Gamma-aminobutyric acid (GABA) receptor, an inhibitory chloride ion channel; at least four types of subunits (alpha, beta, gamma and delta) are known []. Serotonin 5HT3 receptor, of which there are seven major types (5HT3-5HT7) []. Glutamate receptor, an excitatory cation channel of which at least three types have been described (kainate, N-methyl-D-aspartate (NMDA) and quisqualate) []. These receptors possess a pentameric structure (made up of varying subunits), surrounding a central pore. All known sequences of subunits from neurotransmitter-gated ion-channels are structurally related. They are composed of a large extracellular glycosylated N-terminal ligand-binding domain, followed by three hydrophobic transmembrane regions which form the ionic channel, followed by an intracellular region of variable length. A fourth hydrophobic region is found at the C-terminal of the sequence [, ]. This domain represents four transmembrane helices of a variety of neurotransmitter-gated ion-channels.; GO: 0006811 ion transport, 0016020 membrane; PDB: 1DXZ_A 3MRA_A 1EQ8_C 1OED_C 2PR9_P 1A11_A 1CEK_A 2BG9_E 2KSR_A 2K59_B ....
Probab=99.50 E-value=1.5e-15 Score=142.13 Aligned_cols=81 Identities=41% Similarity=0.801 Sum_probs=75.1
Q ss_pred EehhhHHHHHhhheeeeccCCCCCCeEeehHHHHHHHHHHHHHHhccCCCCCCcChhhHHHHHHHHHHHHHHHHHHHhhh
Q psy12313 386 VYVPCVLIVVLSWVSFWIHREATSDRIGLGITTVLTLSTISLDSRTDLPKVRYATALDWFLLMSFFYCIATILEFAAVHY 465 (488)
Q Consensus 386 iilP~~livllsl~sFwLp~~s~~~Ri~L~it~LLs~~~~~~~v~~~LP~~sylt~l~~~l~~~~i~v~~sli~~viV~~ 465 (488)
+++||+++++++|++||+|+++.++|+++|+|++|++++++..+++.||++||.++++.|++.|++++++++++..++++
T Consensus 1 l~~P~~li~~~s~~~f~~~~~~~~~rv~l~it~lL~~~~~~~~~~~~lP~~s~~~pl~~~~~~~~~~v~~~~~~~avv~~ 80 (237)
T PF02932_consen 1 LIIPCILIVVLSWLSFWLPPESGPERVTLGITTLLAMTVFLLMVAENLPPTSYAKPLDGWYFICTMFVFSASLEFAVVVY 80 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CeehHHHHHHHHHhheEeCccccccccccchhHHHHHHHHHhhhhhhhcccccccchhhhhccccchhhhHHHHhhhhhh
Confidence 47999999999999999999985599999999999999999999999999999999999999999999998888876666
Q ss_pred e
Q psy12313 466 F 466 (488)
Q Consensus 466 l 466 (488)
.
T Consensus 81 ~ 81 (237)
T PF02932_consen 81 N 81 (237)
T ss_dssp H
T ss_pred h
Confidence 4
No 9
>PF14494 DUF4436: Domain of unknown function (DUF4436)
Probab=94.45 E-value=0.11 Score=51.47 Aligned_cols=149 Identities=13% Similarity=0.237 Sum_probs=74.0
Q ss_pred CCCCCCCCCCCcccc-cccccccccccceeeeeCCCceeeccCCccccceEeecCCccceeecccCCCeeEEEEEEEEEe
Q psy12313 299 PMSLRNFPMDTQSCP-LILGSYAYPIEKLVYHWTPGKSISFVPGMAISQFDFISSPKRNFTFKRREGEFSLLQVNFNLKR 377 (488)
Q Consensus 299 ~~dl~~FPFD~Q~C~-L~~~Sw~y~~~ev~l~~~~~~~v~~~~~~~~~ew~l~~~~~~~~~~~~~~~~ys~l~~~i~LkR 377 (488)
.-+..+||||+.+-. +.+..+.-+..+-...+ ..+... -+..+|++........ + ....+.++++|
T Consensus 96 ~G~~~~yPFD~Y~~~~i~v~~~~g~~~~~~~~p---~~v~~~--~s~~gW~i~~~~~~~~-----~---~~~~~~i~l~R 162 (256)
T PF14494_consen 96 DGDINNYPFDRYRTDPIRVSAFVGNGDNREPVP---ARVTLT--GSLSGWDISATRVADA-----D---GGDGVDITLKR 162 (256)
T ss_pred cCCccCCCCcccccceEEEEEEecCCCcccccc---eEEEEE--cccCCeEEEeeecCCC-----C---CceeEEEEEEc
Confidence 456889999999888 66644322221111100 011111 1246787754321111 1 44678999999
Q ss_pred ccceeEEEEehhhHHHHHhhheeeeccCCCC--CCeEeehHHH-HHHHHHHHHHHhccCCCCC-CcChhhHHH-HHHHHH
Q psy12313 378 HRGYFVIQVYVPCVLIVVLSWVSFWIHREAT--SDRIGLGITT-VLTLSTISLDSRTDLPKVR-YATALDWFL-LMSFFY 452 (488)
Q Consensus 378 ~~~~y~~~iilP~~livllsl~sFwLp~~s~--~~Ri~L~it~-LLs~~~~~~~v~~~LP~~s-ylt~l~~~l-~~~~i~ 452 (488)
..+--.+.+++ +.++.+++.+++++-.... ..++...+.+ +.++.+-.-.+.+.+|.++ .-.++|... +-+++.
T Consensus 163 s~~~~~F~~~i-~~vm~~L~~~al~~ai~~~~~rr~~~~~~l~w~aA~LFAlp~lRN~lPGaPP~G~~iD~~~vlW~~i~ 241 (256)
T PF14494_consen 163 SRGVLFFALFI-CLVMWALATLALFVAIQVLRRRRKFEPPMLTWMAAMLFALPPLRNILPGAPPIGSWIDFAGVLWVLIA 241 (256)
T ss_pred cCcceehHHHH-HHHHHHHHHHHHHHHHHHHhCccccccchHHHHHHHHHhhhhHhccCCCCCCCcceEeeeehHHHHHH
Confidence 98866654333 2333445555555443221 1223333333 3333344455788899875 445566432 233444
Q ss_pred HHHHHHHHH
Q psy12313 453 CIATILEFA 461 (488)
Q Consensus 453 v~~sli~~v 461 (488)
+.++++.++
T Consensus 242 l~~~m~~~v 250 (256)
T PF14494_consen 242 LVASMVLYV 250 (256)
T ss_pred HHHHHHHHH
Confidence 444444433
No 10
>PF06554 Olfactory_mark: Olfactory marker protein; InterPro: IPR009103 Olfactory marker protein (OMP) is a highly expressed, cytoplasmic protein found in mature olfactory sensory receptor neurons of all vertebrates. OMP is a modulator of the olfactory signal transduction cascade. The crystal structure of OMP reveals a beta sandwich consisting of eight strands in two sheets with a jelly-roll topology []. Three highly conserved regions have been identified as possible protein-protein interaction sites in OMP, indicating a possible role for OMP in modulating such interactions, thereby acting as a molecular switch [].; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0007608 sensory perception of smell; PDB: 1ZRI_A 1JYT_A 1JOD_B 1F35_A 1JOB_A.
Probab=18.42 E-value=57 Score=28.96 Aligned_cols=17 Identities=18% Similarity=0.601 Sum_probs=9.9
Q ss_pred ceEEecccccccccccCee
Q psy12313 241 NNLSLSIKMLEKIWRPDTY 259 (488)
Q Consensus 241 ~~i~l~~~~~~~IW~PdI~ 259 (488)
..+.+.. .+++|+||+.
T Consensus 65 GkvtItg--tsQ~WTPDLT 81 (151)
T PF06554_consen 65 GKVTITG--TSQLWTPDLT 81 (151)
T ss_dssp EEEEEEE--B-TTS-TTTS
T ss_pred CeEEEEe--eccccCcchh
Confidence 3444443 6899999984
Done!