Query psy12313
Match_columns 488
No_of_seqs 200 out of 1659
Neff 7.1
Searched_HMMs 29240
Date Fri Aug 16 15:53:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12313.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12313hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rhw_A Avermectin-sensitive gl 100.0 1.3E-61 4.4E-66 497.6 17.1 308 173-482 2-318 (347)
2 2bg9_E Acetylcholine receptor 100.0 1.1E-59 3.6E-64 487.3 14.0 296 172-472 2-305 (370)
3 2bg9_B Acetylcholine receptor 100.0 4.4E-59 1.5E-63 482.6 16.1 294 171-471 2-300 (370)
4 4aq5_B Acetylcholine receptor 100.0 1.8E-58 6.3E-63 493.6 17.5 311 169-486 24-354 (493)
5 2bg9_A Acetylcholine receptor 100.0 9E-59 3.1E-63 480.3 14.5 295 171-472 2-304 (370)
6 4aq5_A Acetylcholine receptor 100.0 4.9E-59 1.7E-63 494.0 12.6 311 169-486 24-348 (461)
7 4aq5_E Acetylcholine receptor 100.0 9.4E-59 3.2E-63 495.3 13.9 311 171-486 1-332 (488)
8 2bg9_C Acetylcholine receptor 100.0 2.9E-58 1E-62 476.3 16.0 291 171-471 2-302 (369)
9 4aq5_C Acetylcholine receptor 100.0 1.6E-57 5.5E-62 489.2 12.7 312 169-486 21-359 (522)
10 3tlw_A GLR4197 protein, GLIC; 100.0 3.9E-56 1.3E-60 452.2 17.6 289 182-481 5-301 (321)
11 3rqw_A ELIC pentameric ligand 100.0 1.3E-53 4.4E-58 433.8 16.4 284 190-481 2-302 (322)
12 2qc1_B Acetylcholine receptor 100.0 1.9E-42 6.6E-47 331.6 19.0 204 170-379 2-212 (212)
13 4aoe_A Acetylcholine-binding p 100.0 6.6E-42 2.3E-46 325.7 19.0 198 170-377 2-204 (205)
14 4aod_A Acetylcholine-binding p 100.0 7.8E-42 2.7E-46 325.4 18.6 198 170-377 2-204 (205)
15 3sq6_A ACHBP, neuronal acetylc 100.0 4.5E-41 1.5E-45 320.2 16.4 194 172-378 2-203 (204)
16 2wn9_A Soluble acetylcholine r 100.0 1.8E-39 6.3E-44 314.3 17.4 207 169-388 11-226 (228)
17 4afh_A ACHBP; acetylcholine-bi 100.0 7.4E-40 2.5E-44 317.1 12.0 205 170-386 3-221 (230)
18 1uw6_A Acetylcholine-binding p 100.0 8.9E-39 3.1E-43 305.9 19.1 199 172-384 3-211 (211)
19 3igq_A GLR4197 protein; plgic 100.0 1.7E-37 5.7E-42 294.8 15.0 188 186-382 5-197 (201)
20 2bj0_A Acetylcholine-binding p 100.0 8.2E-37 2.8E-41 290.6 18.5 193 174-378 4-203 (203)
21 2ksr_A Neuronal acetylcholine 99.8 1.1E-20 3.8E-25 172.5 1.2 112 360-472 9-121 (164)
22 2lkg_A Acetylcholine receptor; 99.7 2.4E-20 8.2E-25 166.0 -6.6 104 363-467 33-137 (140)
23 2lly_A Neuronal acetylcholine 99.7 1.8E-18 6E-23 153.7 2.8 97 374-471 2-99 (137)
24 1oed_A Acetylcholine receptor 99.5 1.9E-16 6.5E-21 152.1 -3.0 107 379-486 1-114 (227)
25 1oed_E Acetylcholine receptor 99.5 2.9E-16 1E-20 153.7 -2.6 108 379-486 1-115 (260)
26 1oed_B Acetylcholine receptor 99.5 2.6E-16 9E-21 153.2 -4.0 107 379-486 1-114 (250)
27 1oed_C Acetylcholine receptor 99.5 5.3E-16 1.8E-20 151.9 -2.6 107 379-486 1-114 (260)
28 1vry_A Glycine receptor alpha- 99.1 1.3E-11 4.6E-16 97.2 1.0 67 409-475 2-68 (76)
29 1mot_A Glycine receptor alpha- 72.2 0.17 5.7E-06 31.6 -3.1 27 409-435 2-28 (28)
No 1
>3rhw_A Avermectin-sensitive glutamate-gated chloride CHA alpha; membrane protein, transport protein, Cys-loop receptor, LIGA ION channel, neurotransmitter receptor; HET: NAG IVM LMT UND; 3.26A {Caenorhabditis elegans} PDB: 3ri5_A* 3ria_A* 3rif_A*
Probab=100.00 E-value=1.3e-61 Score=497.60 Aligned_cols=308 Identities=33% Similarity=0.649 Sum_probs=279.0
Q ss_pred HHHHHHHHH-hcCCCCCCCCCCCCCcEEEEEEEEEeecccccccccccceeeEEEEEEEcCCcccc----CCCceEEecc
Q psy12313 173 ITLVLNNLL-KNYQSSEPPNHGKGEPTIIKTNMLIRSMGPISEIDMDYSMDCYFRQYWRDSRLSFM----GPINNLSLSI 247 (488)
Q Consensus 173 ~~~Ll~~Ll-~~Yd~~~rP~~~~~~pt~V~v~i~I~~I~~VDE~~~t~~v~~~l~~~W~D~RL~Wn----~~i~~i~l~~ 247 (488)
+++|+++|| ++||+.+||+.+.++|++|.+++.+.+|.++||++|++++++|++|+|+|+||+|| ++++.+.+.+
T Consensus 2 ~~~L~~~Ll~~~Yd~~~RP~~~~~~~v~V~~~l~l~~i~~vde~~~~~t~~~~l~~~W~D~rL~w~p~~~~~~~~l~~~~ 81 (347)
T 3rhw_A 2 DSKILAHLFTSGYDFRVRPPTDNGGPVVVSVNMLLRTISKIDVVNMEYSAQLTLRESWIDKRLSYGVKGDGQPDFVILTV 81 (347)
T ss_dssp HHHHHHHHHHSCCCTTSCCCCSSSCCEEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEECGGGCSSTTCSSSCSEEECCT
T ss_pred HHHHHHHHhhcCCCCCCCCCCCCCCcEEEEEEEEEEeeccccccceeEEEEEEEeeEEECcccCCCCccCCCceEEEecc
Confidence 579999999 99999999999888999999999999999999999999999999999999999996 6788887632
Q ss_pred cccccccccCeeeecccccceeeeeecceeEEEccCCcEEEecccceeeccCCCCCCCCCCCccccccccccccccccee
Q psy12313 248 KMLEKIWRPDTYILNGKQSYVHTITVPNKLLRINQDGDILYSMRLTIKANCPMSLRNFPMDTQSCPLILGSYAYPIEKLV 327 (488)
Q Consensus 248 ~~~~~IW~PdI~~~Ns~~~~~~~~~~~~~~v~V~~dG~V~~~~~~~~~~~C~~dl~~FPFD~Q~C~L~~~Sw~y~~~ev~ 327 (488)
.++||+||++++|++++..+....++..++|++||+|.|.+|.++++.|++|+++||||+|+|+++|+||+|+.++++
T Consensus 82 --~~~IW~PDi~l~N~~~~~~~~~~~~n~~v~i~~~G~V~~~~~~~~~s~C~~dl~~FPfD~Q~C~l~f~S~~y~~~~v~ 159 (347)
T 3rhw_A 82 --GHQIWMPDTFFPNEKQAYKHTIDKPNVLIRIHNDGTVLYSVRISLVLSCPMYLQYYPMDVQQCSIDLASYAYTTKDIE 159 (347)
T ss_dssp --TCCCCCCCEECTTEEEEEECCSSSCSEEEEEETTSEEEEEEEEEEEEECCCCCTTGGGCEEEEEEEEEESSCCTTTEE
T ss_pred --hhceecCCEeeeccccccccccccccEEEEEeCCCCEEEecceEEEEEeeeeeccCCCcceeEEEEeccCcCChhhEE
Confidence 699999999999999888776666777889999999999999999999999999999999999999999999999999
Q ss_pred eeeCCCceeeccC--CccccceEeecCCccceeecccCCCeeEEEEEEEEEeccceeEEEEehhhHHHHHhhheeeeccC
Q psy12313 328 YHWTPGKSISFVP--GMAISQFDFISSPKRNFTFKRREGEFSLLQVNFNLKRHRGYFVIQVYVPCVLIVVLSWVSFWIHR 405 (488)
Q Consensus 328 l~~~~~~~v~~~~--~~~~~ew~l~~~~~~~~~~~~~~~~ys~l~~~i~LkR~~~~y~~~iilP~~livllsl~sFwLp~ 405 (488)
+.|..++++...+ .+..+||++.+.....+...+..+.|+++.+.|.+||+++||++++++|++++++++|++||+|+
T Consensus 160 l~~~~~~~~~~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~y~~l~~~~~l~R~~~~y~~~l~iP~~li~~ls~~sF~lp~ 239 (347)
T 3rhw_A 160 YLWKEHSPLQLKVGLSSSLPSFQLTNTSTTYCTSVTNTGIYSCLRTTIQLKREFSFYLLQLYIPSCMLVIVSWVSFWFDR 239 (347)
T ss_dssp EEECSSCSEEECTTSGGGCCSEEEEEEEEEECCEECSSCEECEEEEEEEEEECSHHHHHHTHHHHHHHHHHHHTTTTSCT
T ss_pred EEecCCCceeecCcceeEccceEEeeEEeeEeeeeecccceeEEEEEEEEEEEeeEEEEEeehhHHHHHHHhheEEeccC
Confidence 9998765555444 56789999998766555555667899999999999999999999999999999999999999999
Q ss_pred CCCCCeEeehHHHHHHHHHHHHHHhccCCCCCCcChhhHHHHHHHHHHHHHHHHHHHhhheeccCCC--CChhhHHHhc
Q psy12313 406 EATSDRIGLGITTVLTLSTISLDSRTDLPKVRYATALDWFLLMSFFYCIATILEFAAVHYFTKLCYP--GYPSGFIERL 482 (488)
Q Consensus 406 ~s~~~Ri~L~it~LLs~~~~~~~v~~~LP~~sylt~l~~~l~~~~i~v~~sli~~viV~~l~~~~~~--~~~~~~l~~L 482 (488)
++.++|+++++|++|++++++..+++.+|++||+|++++|+.+|+++++++++|+++|+++.+++++ ...+.|++++
T Consensus 240 ~~~~~Rv~lgit~lLt~tv~~~~~~~~lP~~S~v~~id~~~~~~~~~v~~slle~~~v~~l~~~~~~~~~~~~~~~~~~ 318 (347)
T 3rhw_A 240 TAIPARVTLGVTTLLTMTAQSAGINSQLPPVSYIKAIDVWIGACMTFIFCALLEFALVNHIANAGTTEWNDISKRVDLI 318 (347)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHTSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHH
T ss_pred CCCcceEEEEeehHHHHHHHHHHHHhhCCCccceeHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhhhhHHHHHH
Confidence 9778999999999999999999999999999999999999999999999999999999999887764 2344454443
No 2
>2bg9_E Acetylcholine receptor protein, gamma chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}
Probab=100.00 E-value=1.1e-59 Score=487.29 Aligned_cols=296 Identities=16% Similarity=0.330 Sum_probs=269.4
Q ss_pred hHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEEEEEeecccccccccccceeeEEEEEEEcCCcccc----CCCceEEecc
Q psy12313 172 NITLVLNNLLKNYQSSEPPNHGKGEPTIIKTNMLIRSMGPISEIDMDYSMDCYFRQYWRDSRLSFM----GPINNLSLSI 247 (488)
Q Consensus 172 ~~~~Ll~~Ll~~Yd~~~rP~~~~~~pt~V~v~i~I~~I~~VDE~~~t~~v~~~l~~~W~D~RL~Wn----~~i~~i~l~~ 247 (488)
.+++|+++||++||+.+||+.++++|++|.+++.+.+|.++||++|++++++|++++|+|+||+|| +|++.+.++
T Consensus 2 ~e~~L~~~Ll~~Yd~~~RP~~~~~~pv~V~~~i~l~~i~~vde~~~~~~~~~~l~~~W~D~rL~w~~~~~~~i~~l~v~- 80 (370)
T 2bg9_E 2 EEGRLIEKLLGDYDKRIKPAKTLDHVIDVTLKLTLTNLISLNEKEEALTTNVWIEIQWNDYRLSWNTSEYEGIDLVRIP- 80 (370)
T ss_dssp CHHHHHHHHHHHCCSSSCCCSSSSSCCCEEEEEEEEEEEEEETTTTEEEEEEEEEEEEECGGGCCCTTTTTTCSCBCCC-
T ss_pred HHHHHHHHHHhccCCCCCCCCCCCCCEEEEEEEEehhhhchhhcccceeEeEEEeeEEECCCcCCChhhcCCeeEEeec-
Confidence 578999999999999999998889999999999999999999999999999999999999999999 679999999
Q ss_pred cccccccccCeeeecccccceeeeeecceeEEEccCCcEEEecccceeeccCCCCCCCCCCCccccccccccccccccee
Q psy12313 248 KMLEKIWRPDTYILNGKQSYVHTITVPNKLLRINQDGDILYSMRLTIKANCPMSLRNFPMDTQSCPLILGSYAYPIEKLV 327 (488)
Q Consensus 248 ~~~~~IW~PdI~~~Ns~~~~~~~~~~~~~~v~V~~dG~V~~~~~~~~~~~C~~dl~~FPFD~Q~C~L~~~Sw~y~~~ev~ 327 (488)
.++||+||++++|++++..+..... .+.|++||+|.|.+|.++++.|+||+++||||+|+|+++|+||+|+.++++
T Consensus 81 --~~~IW~PDi~~~N~~~~~~~~~~~~--~~~v~~~G~V~~~~~~~~~~~C~mdl~~FPfD~Q~C~l~f~S~~y~~~~i~ 156 (370)
T 2bg9_E 81 --SELLWLPDVVLENNVDGQFEVAYYA--NVLVYNDGSMYWLPPAIYRSTCPIAVTYFPFDWQNCSLVFRSQTYNAHEVN 156 (370)
T ss_dssp --GGGSCCCCEEESSSCCSCCBSSSSC--CCEECSSSEEEECCEEEEEECCCCSSCSSSSSCCBCCEEEEESSSCTTSCC
T ss_pred --hhccCCCCEeeccccCCcccccccc--cEEEECCccEEEecCEEEEEECcccccCCCCCeEEEEEEEEeeccccceeE
Confidence 8999999999999998876644333 357999999999999999999999999999999999999999999999999
Q ss_pred eeeCCCceeeccCCccccceEeecCCcccee---ecccCCCeeEEEEEEEEEeccceeEEEEehhhHHHHHhhheeeecc
Q psy12313 328 YHWTPGKSISFVPGMAISQFDFISSPKRNFT---FKRREGEFSLLQVNFNLKRHRGYFVIQVYVPCVLIVVLSWVSFWIH 404 (488)
Q Consensus 328 l~~~~~~~v~~~~~~~~~ew~l~~~~~~~~~---~~~~~~~ys~l~~~i~LkR~~~~y~~~iilP~~livllsl~sFwLp 404 (488)
+.|..++.++.......+||++.+....... +..+++.|+++.+.|++||+++||.+++++|++++++++|++||+|
T Consensus 157 l~~~~~~~~~~~~~~~~~eW~l~~~~~~~~~~~~y~~~~~~y~~l~~~~~l~R~~~~y~~~~~iP~~liv~ls~~sFwlp 236 (370)
T 2bg9_E 157 LQLSAEEGIDPEDFTENGEWTIRHRPAKKNYNWQLTKDDIDFQEIIFFLIIQRKPLFYIINIIAPCVLISSLVVLVYFLP 236 (370)
T ss_dssp EECCCSCCCGGGSCCTTSSEEEEECCCCEECCCCTTCCCSCCCEEEECCEEEECCCSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEecCCCcccHhhcccccEEEEecceeEEEEEecccCCCCCCcEEEEEEEEEEccCceeEEEehhHHHHHHHHHHeEEec
Confidence 9997654455555667899999987764433 3346789999999999999999999999999999999999999999
Q ss_pred CCCCCCeEeehHHHHHHHHHHHHHHhccCCCCCC-cChhhHHHHHHHHHHHHHHHHHHHhhheeccCCC
Q psy12313 405 REATSDRIGLGITTVLTLSTISLDSRTDLPKVRY-ATALDWFLLMSFFYCIATILEFAAVHYFTKLCYP 472 (488)
Q Consensus 405 ~~s~~~Ri~L~it~LLs~~~~~~~v~~~LP~~sy-lt~l~~~l~~~~i~v~~sli~~viV~~l~~~~~~ 472 (488)
+++.++|+++++|++|++++++..+++.||++|| +|++++|+.+|+++++++++++++|.++.++++.
T Consensus 237 ~~a~~~Rv~lgit~lLt~t~~~~~~~~~lP~~S~~vp~i~~~~~~~~~~v~~sll~~v~v~~~~~r~~~ 305 (370)
T 2bg9_E 237 AQAGGQKCTLSISVLLAQTIFLFLIAQKVPETSLNVPLIGKYLIFVMFVSLVIVTNCVIVLNVSLRTPN 305 (370)
T ss_dssp HHSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCSTT
T ss_pred cccCcceeEEeeeHHHHHHHHHHHHHHhCCCccCCCChHHHHHHHHHHHHHHHHHHHhhheeeeccCCC
Confidence 9977999999999999999999999999999998 9999999999999999999999988777655443
No 3
>2bg9_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}
Probab=100.00 E-value=4.4e-59 Score=482.62 Aligned_cols=294 Identities=17% Similarity=0.389 Sum_probs=267.7
Q ss_pred chHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEEEEEeecccccccccccceeeEEEEEEEcCCcccc----CCCceEEec
Q psy12313 171 KNITLVLNNLLKNYQSSEPPNHGKGEPTIIKTNMLIRSMGPISEIDMDYSMDCYFRQYWRDSRLSFM----GPINNLSLS 246 (488)
Q Consensus 171 ~~~~~Ll~~Ll~~Yd~~~rP~~~~~~pt~V~v~i~I~~I~~VDE~~~t~~v~~~l~~~W~D~RL~Wn----~~i~~i~l~ 246 (488)
+.+++|+++||++||+.+||+.+.++|++|.+++.+.+|.++||++|++++++|++++|+|+||+|| +|++.+.++
T Consensus 2 ~~~~~L~~~Ll~~Yd~~~RP~~~~~~pv~V~~~i~l~~i~~vde~~~~~~~~~~l~~~W~D~rL~w~~~~~~~i~~l~v~ 81 (370)
T 2bg9_B 2 VMEDTLLSVLFENYNPKVRPSQTVGDKVTVRVGLTLTSLLILNEKNEEMTTSVFLNLAWTDYRLQWDPAAYEGIKDLSIP 81 (370)
T ss_dssp TTHHHHHHHHHHHCCTTCCSSCSSSSCCEEEEECCEEEEEEEETTTTEEEEEEECEEEEECTTSCCCTTTTSSCSEEEEE
T ss_pred hHHHHHHHHHHhcCCCCCCCCCCCCCCEEEEEEEEehhhhhhhccccceEEEEEEeeeeECcccCcCccccCCeeEEEec
Confidence 5789999999999999999998888999999999999999999999999999999999999999999 689999999
Q ss_pred ccccccccccCeeeecccccceeeeeecceeEEEccCCcEEEecccceeeccCCCCCCCCCCCcccccccccccccccce
Q psy12313 247 IKMLEKIWRPDTYILNGKQSYVHTITVPNKLLRINQDGDILYSMRLTIKANCPMSLRNFPMDTQSCPLILGSYAYPIEKL 326 (488)
Q Consensus 247 ~~~~~~IW~PdI~~~Ns~~~~~~~~~~~~~~v~V~~dG~V~~~~~~~~~~~C~~dl~~FPFD~Q~C~L~~~Sw~y~~~ev 326 (488)
.++||+||++++|++++..+.... ..+.|++||+|.|.+|.++++.|+||+++||||+|+|+++|+||+|+.+++
T Consensus 82 ---~~~IW~PDi~~~N~~~~~~~~~~~--~~~~v~~~G~V~~~~~~~~~~~C~mdl~~FPfD~Q~C~l~f~S~~y~~~~i 156 (370)
T 2bg9_B 82 ---SDDVWQPDIVLMNNNDGSFEITLH--VNVLVQHTGAVSWHPSAIYRSSCTIKVMYFPFDWQNCTMVFKSYTYDTSEV 156 (370)
T ss_dssp ---SSSSCCCCEEESSCCCSCEESSSS--CEEEEETTSEEEECCEEEEEECCCCTTCSSSTTCCCCEEEEEESSCCBTSC
T ss_pred ---hhhccCCCcccccccccccccccc--ceEEEeCCceEEEEecceEEEEccCcccCCCCCceeeeEEEEeccccccEE
Confidence 899999999999999887664433 347799999999999999999999999999999999999999999999999
Q ss_pred eeeeCCCceeeccCCccccceEeecCCccceeecccCCCeeEEEEEEEEEeccceeEEEEehhhHHHHHhhheeeeccCC
Q psy12313 327 VYHWTPGKSISFVPGMAISQFDFISSPKRNFTFKRREGEFSLLQVNFNLKRHRGYFVIQVYVPCVLIVVLSWVSFWIHRE 406 (488)
Q Consensus 327 ~l~~~~~~~v~~~~~~~~~ew~l~~~~~~~~~~~~~~~~ys~l~~~i~LkR~~~~y~~~iilP~~livllsl~sFwLp~~ 406 (488)
++.|..++.++.......+||++.+...... +..+++.|+++.+.|++||+++||.+++++|++++++++|++||+|++
T Consensus 157 ~l~~~~~~~~~~~~~~~~~eW~l~~~~~~~~-y~~~~~~y~~l~~~~~l~R~~~~y~~~~~iP~~liv~ls~~sFwlp~~ 235 (370)
T 2bg9_B 157 ILQHALDAMINQDAFTENGQWSIEHKPSRKN-WRSDDPSYEDVTFYLIIQRKPLFYIVYTIVPCILISILAILVFYLPPD 235 (370)
T ss_dssp EEECSCCCCCSTTSCCTTCSSEECCCCEEEC-CCTTSSSBCCEEEECCEECCCCSSHHHHHHHHHHHHHHHHHHHHSTTT
T ss_pred EEEeccCCccccccccccceEEEeccceEEe-ecCCCCCccEEEEEEEEEEcccceeeeecchHHHHHHHHhheEEccCC
Confidence 9998333455556667789999998776444 555788999999999999999999999999999999999999999999
Q ss_pred CCCCeEeehHHHHHHHHHHHHHHhccCCCCCC-cChhhHHHHHHHHHHHHHHHHHHHhhheeccCC
Q psy12313 407 ATSDRIGLGITTVLTLSTISLDSRTDLPKVRY-ATALDWFLLMSFFYCIATILEFAAVHYFTKLCY 471 (488)
Q Consensus 407 s~~~Ri~L~it~LLs~~~~~~~v~~~LP~~sy-lt~l~~~l~~~~i~v~~sli~~viV~~l~~~~~ 471 (488)
.++|++++++++|++++++..+++.||++|| +|++++|+.+|++++++++++++++.++.++++
T Consensus 236 -~~~Rv~lgit~lLt~t~~~~~~~~~lP~~S~~vp~i~~~~~~~~~~v~~sll~~v~v~~~~~r~~ 300 (370)
T 2bg9_B 236 -AGEKMSLSISALLALTVFLLLLADKVPETSLSVPIIISYLMFIMILVAFSVILSVVVLNLHHRSP 300 (370)
T ss_dssp -CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred -CCceEEEEehHHHHHHHHHHHHHhhCCCccccccHHHHHHHHHHHHHHHHHHHHHHhhhhhccCC
Confidence 5999999999999999999999999999997 999999999999999999999887655544443
No 4
>4aq5_B Acetylcholine receptor beta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_B
Probab=100.00 E-value=1.8e-58 Score=493.59 Aligned_cols=311 Identities=18% Similarity=0.365 Sum_probs=265.1
Q ss_pred ccchHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEEEEEeecccccccccccceeeEEEEEEEcCCcccc----CCCceEE
Q psy12313 169 IGKNITLVLNNLLKNYQSSEPPNHGKGEPTIIKTNMLIRSMGPISEIDMDYSMDCYFRQYWRDSRLSFM----GPINNLS 244 (488)
Q Consensus 169 ~~~~~~~Ll~~Ll~~Yd~~~rP~~~~~~pt~V~v~i~I~~I~~VDE~~~t~~v~~~l~~~W~D~RL~Wn----~~i~~i~ 244 (488)
.++.+++|+++||++||+.+||+.+.++|++|.+++.+.+|.++||++|++++++|++++|+|+||+|| +|++.++
T Consensus 24 ~~~~e~~L~~~Ll~~Yd~~~RP~~~~~~pv~V~v~l~l~~i~~vdE~~q~~t~~v~l~~~W~D~rL~Wnp~~y~gi~~l~ 103 (493)
T 4aq5_B 24 ASVMEDTLLSVLFENYNPKVRPSQTVGDKVTVRVGLTLTSLLILNEKNEEMTTSVFLNLAWTDYRLQWDPAAYEGIKDLS 103 (493)
T ss_dssp -CTTHHHHHHHHHHHCCSSSCSSCSSSSCCEEEEECCEEEEEEEETTTTEEEEEEECEEEEECTTCCCCHHHHSSCSCEE
T ss_pred CCcHHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEEEEEeeeeeccccceEEEEEEEeecceECcccCCChhhcCCeeEEe
Confidence 457899999999999999999999889999999999999999999999999999999999999999999 7999999
Q ss_pred ecccccccccccCeeeecccccceeeeeecceeEEEccCCcEEEecccceeeccCCCCCCCCCCCccccccccccccccc
Q psy12313 245 LSIKMLEKIWRPDTYILNGKQSYVHTITVPNKLLRINQDGDILYSMRLTIKANCPMSLRNFPMDTQSCPLILGSYAYPIE 324 (488)
Q Consensus 245 l~~~~~~~IW~PdI~~~Ns~~~~~~~~~~~~~~v~V~~dG~V~~~~~~~~~~~C~~dl~~FPFD~Q~C~L~~~Sw~y~~~ 324 (488)
++ .++||+||++++|++++.++..... .+.|++||+|.|.+|.++++.|++|+++||||+|+|+++|+||+|+.+
T Consensus 104 v~---~~~IW~PDi~l~N~~d~~~~~~~~~--nv~v~~~G~V~~~~~~~~~s~C~mdl~~FPfD~Q~C~l~f~S~~y~~~ 178 (493)
T 4aq5_B 104 IP---SDDVWQPDIVLMNNNDGSFEITLHV--NVLVQHTGAVSWHPSAIYRSSCTIKVMYFPFDWQNCTMVFKSYTYDTS 178 (493)
T ss_dssp EC---SCSSCCCCCEESSCCCSCEESSSSS--CEEECTTSEEEECCEEEEEECCSCTTCSSSTTCCCCEEEEECSSCCBT
T ss_pred cc---cccCccCcEEEeccccccccccccc--ceEEecCCCEEEeeeeeeeecccccccCCCccceeEEEEEeeecCccc
Confidence 99 8999999999999999877654333 367999999999999999999999999999999999999999999999
Q ss_pred ceeeeeCCCc---------eeeccCCccccceEeecCCccceeecccCCCeeEEEEEEEEEeccceeEEEEehhhHHHHH
Q psy12313 325 KLVYHWTPGK---------SISFVPGMAISQFDFISSPKRNFTFKRREGEFSLLQVNFNLKRHRGYFVIQVYVPCVLIVV 395 (488)
Q Consensus 325 ev~l~~~~~~---------~v~~~~~~~~~ew~l~~~~~~~~~~~~~~~~ys~l~~~i~LkR~~~~y~~~iilP~~livl 395 (488)
++++.|..++ .++.......+||++.+.........+ +..|+++.+.|.+||++.||++++++|++++++
T Consensus 179 ~v~l~~~~~~~~~~~~~~~~~~l~~f~~~~eW~l~~~~~~~~~~~~-~~~y~~l~~~~~lrR~~~~Y~i~l~iP~~liv~ 257 (493)
T 4aq5_B 179 EVILQHALDAKGEREVKEIMINQDAFTENGQWSIEHKPSRKNWRSD-DPSYEDVTFYLIIQRKPLFYIVYTIVPCILISI 257 (493)
T ss_dssp SCEEECCCCC---------CCSGGGCCTTCSSBCCCCCCEECCCTT-SSSBCCEEEECCCBCCCCSSTTTTHHHHHHHHH
T ss_pred cEEEEeccCCCCccceecccccHHHhccccceeeeeeeEEEEeecC-CCCccEEEEEEEEEeccceeeehhhhhHHHHHH
Confidence 9999986432 233344566799999987664333322 238999999999999999999999999999999
Q ss_pred hhheeeeccCCCCCCeEeehHHHHHHHHHHHHHHhccCCCCCC-cChhhHHHHHHHHHHHHHHHHHHHhhheecc-----
Q psy12313 396 LSWVSFWIHREATSDRIGLGITTVLTLSTISLDSRTDLPKVRY-ATALDWFLLMSFFYCIATILEFAAVHYFTKL----- 469 (488)
Q Consensus 396 lsl~sFwLp~~s~~~Ri~L~it~LLs~~~~~~~v~~~LP~~sy-lt~l~~~l~~~~i~v~~sli~~viV~~l~~~----- 469 (488)
++|++||+|+++ ++|+++++|++|++++++..+++.+|++|+ +|+++.|+.+|+++++++++++++|.++.++
T Consensus 258 Ls~lsF~Lp~~s-~eRvsLgiT~LLt~tvfl~~v~~~LP~tS~~vPlI~~y~~~~m~~v~lsll~tv~Vl~l~~r~~~~~ 336 (493)
T 4aq5_B 258 LAILVFYLPPDA-GEKMSLSISALLALTVFLLLLADKVPETSLSVPIIISYLMFIMILVAFSVILSVVVLNLHHRSPNTH 336 (493)
T ss_dssp HHHHHHHSTTTC-GGGGTHHHHHHHHHHHHHHHHHHHTTTTTTSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCTTTC
T ss_pred HHHhEEecCCCC-CceEEehHHHHHHHHHHHHHHHhcCCccccCCCchHhHHHHHHHHHHHHHHHHHhheeeeccCCCCC
Confidence 999999999996 999999999999999999999999999997 8999999999999999999999988777433
Q ss_pred -CCCCChhhHHHhccccc
Q psy12313 470 -CYPGYPSGFIERLPVIG 486 (488)
Q Consensus 470 -~~~~~~~~~l~~Lp~i~ 486 (488)
.+++.+..|++.||++.
T Consensus 337 ~mp~w~r~~~l~~l~~~l 354 (493)
T 4aq5_B 337 TMPNWIRQIFIETLPPFL 354 (493)
T ss_dssp ------------------
T ss_pred cCCHHHHHHHHHhCcceE
Confidence 34455666677788764
No 5
>2bg9_A Acetylcholine receptor protein, alpha chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}
Probab=100.00 E-value=9e-59 Score=480.33 Aligned_cols=295 Identities=20% Similarity=0.359 Sum_probs=267.4
Q ss_pred chHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEEEEEeecccccccccccceeeEEEEEEEcCCcccc----CCCceEEec
Q psy12313 171 KNITLVLNNLLKNYQSSEPPNHGKGEPTIIKTNMLIRSMGPISEIDMDYSMDCYFRQYWRDSRLSFM----GPINNLSLS 246 (488)
Q Consensus 171 ~~~~~Ll~~Ll~~Yd~~~rP~~~~~~pt~V~v~i~I~~I~~VDE~~~t~~v~~~l~~~W~D~RL~Wn----~~i~~i~l~ 246 (488)
+.+++|+++||++||+.+||+.+.++|++|.+++.+.+|.++||++|++++++|++++|+|+||+|| +|++.+.++
T Consensus 2 ~~~~~L~~~Ll~~Yd~~~RP~~~~~~pv~V~~~i~l~~i~~vde~~~~~~~~~~l~~~W~D~rL~w~p~~~~~i~~l~v~ 81 (370)
T 2bg9_A 2 EHETRLVANLLENYNKVIRPVEHHTHFVDITVGLQLIQLINVDEVNQIVETNVRLRQQWIDVRLRWNPADYGGIKKIRLP 81 (370)
T ss_dssp TTHHHHHHHHHHSCCTTCCCCCSSSSCEEEEEEEEEEEEEEEETTTTEEEEEEEEEEEECCTTSCCCTTTHHHHSSEEEE
T ss_pred hHHHHHHHHHHhcCCCCCCCCCCCCCCEEEEEEEEehHhhcchhhccceEEEEEEeeeeECCCccCChhhcCCccEEEec
Confidence 5789999999999999999998889999999999999999999999999999999999999999999 578999999
Q ss_pred ccccccccccCeeeecccccceeeeeecceeEEEccCCcEEEecccceeeccCCCCCCCCCCCcccccccccccccccce
Q psy12313 247 IKMLEKIWRPDTYILNGKQSYVHTITVPNKLLRINQDGDILYSMRLTIKANCPMSLRNFPMDTQSCPLILGSYAYPIEKL 326 (488)
Q Consensus 247 ~~~~~~IW~PdI~~~Ns~~~~~~~~~~~~~~v~V~~dG~V~~~~~~~~~~~C~~dl~~FPFD~Q~C~L~~~Sw~y~~~ev 326 (488)
.++||+||++++|++++..+... +..++|++||+|.|.+|.++++.|+||+++||||+|+|+++|+||+|+.+++
T Consensus 82 ---~~~IW~PDi~~~N~~~~~~~~~~--~~~~~i~~~G~V~~~~~~~~~~~C~mdl~~FPfD~Q~C~l~f~S~~y~~~~v 156 (370)
T 2bg9_A 82 ---SDDVWLPDLVLYNNADGDFAIVH--MTKLLLDYTGKIMWTPPAIFKSYCEIIVTHFPFDQQNCTMKLGIWTYDGTKV 156 (370)
T ss_dssp ---GGGSCCCCEEETTCCCSCEESCS--SCEEEECSSCCEEECCEEEEEEECCCCTTSSSSSCEEEEEEEEESSCCTTTE
T ss_pred ---hhhccCCcEeccccccccccccc--cceEEEECCeeEEEecceEEEEECCCCcCCCCCCcceeeEEEEEecccCcEE
Confidence 89999999999999988766432 4568999999999999999999999999999999999999999999999999
Q ss_pred eeeeCCCceeeccCCccccceEeecCCccceeec--ccC-CCeeEEEEEEEEEeccceeEEEEehhhHHHHHhhheeeec
Q psy12313 327 VYHWTPGKSISFVPGMAISQFDFISSPKRNFTFK--RRE-GEFSLLQVNFNLKRHRGYFVIQVYVPCVLIVVLSWVSFWI 403 (488)
Q Consensus 327 ~l~~~~~~~v~~~~~~~~~ew~l~~~~~~~~~~~--~~~-~~ys~l~~~i~LkR~~~~y~~~iilP~~livllsl~sFwL 403 (488)
++.+..+ ..+..+....+||++.+......... +++ ++|+++.+.|++||+++||.+++++|++++++++|++||+
T Consensus 157 ~l~~~~~-~~~~~~~~~~~ew~l~~~~~~~~~~~y~~~~~~~y~~l~~~~~l~R~~~~y~~~~~iP~~liv~ls~~sF~l 235 (370)
T 2bg9_A 157 SISPESD-RPDLSTFMESGEWVMKDYRGWKHWVYYTCCPDTPYLDITYHFIMQRIPLYFVVNVIIPCLLFSFLTVLVFYL 235 (370)
T ss_dssp EEECCCC-CCSTTSCCTTCSSEEEEEEEEEEECCCSSSSSCCCEEEEEEEEEECCCTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecCC-CcccccccccceEEEEcceEEEEEEecCCCCCCCeeEEEEEEEEEEccchhhhhhhhHHHHHHHHHHHheec
Confidence 9998654 45555667789999988765433322 233 6899999999999999999999999999999999999999
Q ss_pred cCCCCCCeEeehHHHHHHHHHHHHHHhccCCCCCC-cChhhHHHHHHHHHHHHHHHHHHHhhheeccCCC
Q psy12313 404 HREATSDRIGLGITTVLTLSTISLDSRTDLPKVRY-ATALDWFLLMSFFYCIATILEFAAVHYFTKLCYP 472 (488)
Q Consensus 404 p~~s~~~Ri~L~it~LLs~~~~~~~v~~~LP~~sy-lt~l~~~l~~~~i~v~~sli~~viV~~l~~~~~~ 472 (488)
|+++ ++|+++++|++|++++++..+++.+|++|| +|++++|+.+|+++++++++++++|.++.+++++
T Consensus 236 p~~~-~~Rv~lgit~lLt~t~~~~~~~~~lP~~S~~vp~i~~~~~~~~~~v~~sl~~~~~v~~~~~r~~~ 304 (370)
T 2bg9_A 236 PTDS-GEKMTLSISVLLSLTVFLLVIVELIPSTSSAVPLIGKYMLFTMIFVISSIIVTVVVINTHHRSPS 304 (370)
T ss_dssp HHHC-GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHHHHHHHHHHCSTT
T ss_pred CCCC-CCeEEEeHHHHHHHHHHHHHHHhhCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcc
Confidence 9997 899999999999999999999999999997 9999999999999999999999988776555443
No 6
>4aq5_A Acetylcholine receptor subunit alpha; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_A
Probab=100.00 E-value=4.9e-59 Score=494.01 Aligned_cols=311 Identities=20% Similarity=0.347 Sum_probs=266.5
Q ss_pred ccchHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEEEEEeecccccccccccceeeEEEEEEEcCCcccc----CCCceEE
Q psy12313 169 IGKNITLVLNNLLKNYQSSEPPNHGKGEPTIIKTNMLIRSMGPISEIDMDYSMDCYFRQYWRDSRLSFM----GPINNLS 244 (488)
Q Consensus 169 ~~~~~~~Ll~~Ll~~Yd~~~rP~~~~~~pt~V~v~i~I~~I~~VDE~~~t~~v~~~l~~~W~D~RL~Wn----~~i~~i~ 244 (488)
.++++++|+++||++||+.+||+.+.++|++|++++.+.+|.++||++|++++++|++++|+|+||+|| +|++.++
T Consensus 24 ~~~~e~~L~~~Ll~~Yd~~~RP~~~~~~pv~V~v~l~l~~i~~vdE~~q~~t~~~~l~~~W~D~rL~Wnp~~y~gi~~l~ 103 (461)
T 4aq5_A 24 GSEHETRLVANLLENYNKVIRPVEHHTHFVDITVGLQLIQLINVDEVNQIVETNVRLRQQWIDVRLRWNPADYGGIKKIR 103 (461)
T ss_dssp -CTTHHHHHHHHHHTCCSSCCCCCSSSSCEEEEEEEEEEEEEEEETTTTEEEEEEEEEEEECCTTCBCCTTTHHHHSSEE
T ss_pred CCcHHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEEEEEeeehhhhccceEEEEEEEEeeeeECcccCCChhhcCCccEEE
Confidence 457899999999999999999999889999999999999999999999999999999999999999999 5789999
Q ss_pred ecccccccccccCeeeecccccceeeeeecceeEEEccCCcEEEecccceeeccCCCCCCCCCCCccccccccccccccc
Q psy12313 245 LSIKMLEKIWRPDTYILNGKQSYVHTITVPNKLLRINQDGDILYSMRLTIKANCPMSLRNFPMDTQSCPLILGSYAYPIE 324 (488)
Q Consensus 245 l~~~~~~~IW~PdI~~~Ns~~~~~~~~~~~~~~v~V~~dG~V~~~~~~~~~~~C~~dl~~FPFD~Q~C~L~~~Sw~y~~~ 324 (488)
++ .++||+||++++|++++..+... ...++|++||+|.|.+|.++++.|++|+++||||+|+|+++|+||+|+.+
T Consensus 104 vp---~~~IW~PDi~l~N~~d~~~~~~~--~~~v~v~~dG~V~~~~~~~~~s~C~mdl~~FPfD~Q~C~l~f~S~~y~~~ 178 (461)
T 4aq5_A 104 LP---SDDVWLPDLVLYNNADGDFAIVH--MTKLLLDYTGKIMWTPPAIFKSYCEIIVTHFPFDQQNCTMKLGIWTYDGT 178 (461)
T ss_dssp EE---GGGSCCCCEEESSCCCSCCTTCS--SCEEEECSBCCEEECCEEEEEEECCCCGGGSSSSCEEEEEEEEESSCCTT
T ss_pred ec---CCCEECCceeeeccccccccccc--ccceEEcCCccEEEeccccccccccccccCCCCccCccCeEEeccccCCc
Confidence 99 89999999999999988766432 33488999999999999999999999999999999999999999999999
Q ss_pred ceeeeeCCCceeeccCCccccceEeecCCccceee--cccCC-CeeEEEEEEEEEeccceeEEEEehhhHHHHHhhheee
Q psy12313 325 KLVYHWTPGKSISFVPGMAISQFDFISSPKRNFTF--KRREG-EFSLLQVNFNLKRHRGYFVIQVYVPCVLIVVLSWVSF 401 (488)
Q Consensus 325 ev~l~~~~~~~v~~~~~~~~~ew~l~~~~~~~~~~--~~~~~-~ys~l~~~i~LkR~~~~y~~~iilP~~livllsl~sF 401 (488)
++++.+... .++.......+||++.+........ ..+.+ .|+++.+.|.+||+++||++++++|++++++++|++|
T Consensus 179 ~v~l~~~~~-~~~l~~~~~~~eW~l~~~~~~~~~~~y~~~~~~~y~~l~~~~~l~R~~~~Y~i~l~iP~~liv~ls~lsF 257 (461)
T 4aq5_A 179 KVSISPESD-RPDLSTFMESGEWVMKDYRGWKHWVYYTCCPDTPYLDITYHFIMQRIPLYFVVNVIIPCLLFSFLTVLVF 257 (461)
T ss_dssp TEEEECCCC-CCSGGGCCTTCSSEEEEEEEEEEECCCSSSSSCCCEEEEEEEEEECCCTHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEeccc-cccHHhhhccCceEEeeeeeEEEEEeecCcCCCCcceEEEEEEEEecccceeeehhhhHHHHHHHHHheE
Confidence 999997543 4555666778999999876543332 23446 8999999999999999999999999999999999999
Q ss_pred eccCCCCCCeEeehHHHHHHHHHHHHHHhccCCCCC-CcChhhHHHHHHHHHHHHHHHHHHHhhheecc------CCCCC
Q psy12313 402 WIHREATSDRIGLGITTVLTLSTISLDSRTDLPKVR-YATALDWFLLMSFFYCIATILEFAAVHYFTKL------CYPGY 474 (488)
Q Consensus 402 wLp~~s~~~Ri~L~it~LLs~~~~~~~v~~~LP~~s-ylt~l~~~l~~~~i~v~~sli~~viV~~l~~~------~~~~~ 474 (488)
|+|+++ ++|+++++|++|++++++..+++.+|++| ++|+++.|+.+|+++++++++++++|.++.++ .+++.
T Consensus 258 ~Lp~~s-~eRv~LgiT~LLt~tvfl~~v~~~LP~tS~~vplI~~y~~~~m~~v~~sll~tv~Vl~l~~r~~~~~~mp~w~ 336 (461)
T 4aq5_A 258 YLPTDS-GEKMTLSISVLLSLTVFLLVIVELIPSTSSAVPLIGKYMLFTMIFVISSIIVTVVVINTHHRSPSTHTMPQWV 336 (461)
T ss_dssp HHHHHC-GGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHHHHHHHHHHCCTTTC------
T ss_pred eccccc-cceeehhHHHHHHHHHHHHHHHhhcCcccCCcCHHHHHHHHHHHHHHHHHHHHhhheeeeccCCCCCCCCHHH
Confidence 999997 59999999999999999999999999998 89999999999999999999999988776433 34555
Q ss_pred hhhHHHhccccc
Q psy12313 475 PSGFIERLPVIG 486 (488)
Q Consensus 475 ~~~~l~~Lp~i~ 486 (488)
+..|+++||++.
T Consensus 337 r~~~l~~l~~~l 348 (461)
T 4aq5_A 337 RKIFINTIPNVM 348 (461)
T ss_dssp ------------
T ss_pred HHHHHHhhHHHh
Confidence 666777788775
No 7
>4aq5_E Acetylcholine receptor gamma subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_E
Probab=100.00 E-value=9.4e-59 Score=495.29 Aligned_cols=311 Identities=17% Similarity=0.327 Sum_probs=264.6
Q ss_pred chHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEEEEEeecccccccccccceeeEEEEEEEcCCcccc----CCCceEEec
Q psy12313 171 KNITLVLNNLLKNYQSSEPPNHGKGEPTIIKTNMLIRSMGPISEIDMDYSMDCYFRQYWRDSRLSFM----GPINNLSLS 246 (488)
Q Consensus 171 ~~~~~Ll~~Ll~~Yd~~~rP~~~~~~pt~V~v~i~I~~I~~VDE~~~t~~v~~~l~~~W~D~RL~Wn----~~i~~i~l~ 246 (488)
+.|++|+++||++||+.+||+.+.++|++|.+++.+.+|.++||++|++++++|++++|+|+||+|| +|++.+.++
T Consensus 1 ~~e~rL~~~Ll~~Yd~~~RP~~~~~~pv~V~v~l~l~~I~~VdE~~q~~t~~v~l~~~W~D~rL~Wnp~~y~gi~~l~v~ 80 (488)
T 4aq5_E 1 NEEGRLIEKLLGDYDKRIKPAKTLDHVIDVTLKLTLTNLISLNEKEEALTTNVWIEIQWNDYRLSWNTSEYEGIDLVRIP 80 (488)
T ss_dssp CCHHHHHHHHHHHCCSSSCCCSSTTSCCCEEEEEEEEEECCCBTTTTBEEEEEEEEEEEECCTTCCCTTTTTTCSCCCCC
T ss_pred ChHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEEEEEeeeeccccccceeeeeeeeeeEEECcccCcCchhcCCceEEecC
Confidence 3689999999999999999999889999999999999999999999999999999999999999999 689999999
Q ss_pred ccccccccccCeeeecccccceeeeeecceeEEEccCCcEEEecccceeeccCCCCCCCCCCCcccccccccccccccce
Q psy12313 247 IKMLEKIWRPDTYILNGKQSYVHTITVPNKLLRINQDGDILYSMRLTIKANCPMSLRNFPMDTQSCPLILGSYAYPIEKL 326 (488)
Q Consensus 247 ~~~~~~IW~PdI~~~Ns~~~~~~~~~~~~~~v~V~~dG~V~~~~~~~~~~~C~~dl~~FPFD~Q~C~L~~~Sw~y~~~ev 326 (488)
.++||+||++++|++++.++.....+ +.|++||+|.|.+|..+++.|+||+++||||+|+|+++|+||+|+.+++
T Consensus 81 ---~~~IW~PDi~l~N~~d~~~~~~~~~n--v~v~~~G~V~~~~~~~~~s~C~mdl~~FPfD~Q~C~l~f~S~~y~~~~v 155 (488)
T 4aq5_E 81 ---SELLWLPDVVLENNVDGQFEVAYYAN--VLVYNDGSMYWLPPAIYRSTCPIAVTYFPFDWQNCSLVFRSQTYNAHEV 155 (488)
T ss_dssp ---TTSSCCCCEECSSSCCSCCBSCSSSC--CCBCTTSEEEECCEEBCEECCCCSSSSSSSSCCCCCEEEEESSSCSSSC
T ss_pred ---ccCEECCceehhcccccccccccccc--EEEeCCceEEEecceeEEeecccccccCCCcCceeeEEeeeeccccceE
Confidence 89999999999999998776544433 5699999999999999999999999999999999999999999999999
Q ss_pred eeeeCCCce-------eeccCCccccceEeecCCccceee-c--ccCCCeeEEEEEEEEEeccceeEEEEehhhHHHHHh
Q psy12313 327 VYHWTPGKS-------ISFVPGMAISQFDFISSPKRNFTF-K--RREGEFSLLQVNFNLKRHRGYFVIQVYVPCVLIVVL 396 (488)
Q Consensus 327 ~l~~~~~~~-------v~~~~~~~~~ew~l~~~~~~~~~~-~--~~~~~ys~l~~~i~LkR~~~~y~~~iilP~~livll 396 (488)
++.|..++. ++.......+||++.+...+.... . .+++.|+++.+.|.+||+++||++++++|+++++++
T Consensus 156 ~l~~~~~~~~~~~~~~~d~~~~~~~~eW~l~~~~~~~~~~~~~~~~~~~y~~l~~~~~lrR~~~~Y~i~l~iP~~liv~L 235 (488)
T 4aq5_E 156 NLQLSAEEGEVVEWIHIDPEDFTENGEWTIRHRPAKKNYNWQLTKDDIDFQEIIFFLIIQRKPLFYIINIIAPCVLISSL 235 (488)
T ss_dssp CEECCCSCC-------CGGGSCCTTCSEEEEECCCEEECCCCTTCCCSCCCEEEECCEEEECCCSSHHHHHHHHHHHHHH
T ss_pred EEEeccCCCcceeeeeccHHHccccceEEEEeeEEEEEEeeeccCCCCCcceEEEEEEEccchhheehhHhHHHHHHHHH
Confidence 999875531 233345667999999876533221 1 234579999999999999999999999999999999
Q ss_pred hheeeeccCCCCCCeEeehHHHHHHHHHHHHHHhccCCCCCC-cChhhHHHHHHHHHHHHHHHHHHHhhheecc------
Q psy12313 397 SWVSFWIHREATSDRIGLGITTVLTLSTISLDSRTDLPKVRY-ATALDWFLLMSFFYCIATILEFAAVHYFTKL------ 469 (488)
Q Consensus 397 sl~sFwLp~~s~~~Ri~L~it~LLs~~~~~~~v~~~LP~~sy-lt~l~~~l~~~~i~v~~sli~~viV~~l~~~------ 469 (488)
+|++||+|+++.++|+++++|++|++++++..+++.+|++|+ +|+++.|+.+|+++++++++++++|.++.++
T Consensus 236 s~lsF~Lp~~a~~eRvsLgIt~LLt~tvfl~~v~~~LP~tS~~vPlI~~y~~~~m~lv~~Sll~tv~Vlnl~~r~~~~~~ 315 (488)
T 4aq5_E 236 VVLVYFLPAQAGGQKCTLSISVLLAQTIFLFLIAQKVPETSLNVPLIGKYLIFVMFVSLVIVTNCVIVLNVSLRTPNTHS 315 (488)
T ss_dssp HHHHHHHHHHSCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCSTTTCC
T ss_pred HHHHhcCCccccCceEEEehHHHHHHHHHHHHHHhhCCccccCccHHHHHHHHHHHHHHHHHHHHhhEEEEEccCCCCCc
Confidence 999999999977999999999999999999999999999997 9999999999999999999999988877543
Q ss_pred CCCCChhhHHHhccccc
Q psy12313 470 CYPGYPSGFIERLPVIG 486 (488)
Q Consensus 470 ~~~~~~~~~l~~Lp~i~ 486 (488)
.+++.+..|++.||++.
T Consensus 316 mp~w~r~~~l~~l~~~l 332 (488)
T 4aq5_E 316 LSEKIKHLFLEFLPKYL 332 (488)
T ss_dssp -----------------
T ss_pred CChhHhhhhHhhCccee
Confidence 34555667777788764
No 8
>2bg9_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}
Probab=100.00 E-value=2.9e-58 Score=476.29 Aligned_cols=291 Identities=19% Similarity=0.350 Sum_probs=263.5
Q ss_pred chHHHHHHHHHh--cCCCCCCCCCCCCCcEEEEEEEEEeecccccccccccceeeEEEEEEEcCCcccc----CCCceEE
Q psy12313 171 KNITLVLNNLLK--NYQSSEPPNHGKGEPTIIKTNMLIRSMGPISEIDMDYSMDCYFRQYWRDSRLSFM----GPINNLS 244 (488)
Q Consensus 171 ~~~~~Ll~~Ll~--~Yd~~~rP~~~~~~pt~V~v~i~I~~I~~VDE~~~t~~v~~~l~~~W~D~RL~Wn----~~i~~i~ 244 (488)
+.+++|+++||+ +||+.+||+.++++|++|.+++.+.+|.++||++|++++++|++++|+|+||+|| +|++.+.
T Consensus 2 ~~~~~L~~~Ll~~~~Yd~~~RP~~~~~~pv~V~~~i~l~~i~~vde~~~~~~~~~~l~~~W~D~rL~w~~~~~~~i~~l~ 81 (369)
T 2bg9_C 2 NEEERLINDLLIVNKYNKHVRPVKHNNEVVNIALSLTLSNLISLKETDETLTTNVWMDHAWYDHRLTWNASEYSDISILR 81 (369)
T ss_dssp CSHHHHHHHHTTTTTSCSSSCCSSSSSSCCEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEECTTTCCCCCCCCTCSCEE
T ss_pred chHHHHHHHHhcccCCCCCCCCCCCCCCCEEEEEEEEehhhccccccccceEEEEEEeeeeECCCcccCccccCCeeEEE
Confidence 468899999999 9999999998888999999999999999999999999999999999999999999 6899999
Q ss_pred ecccccccccccCeeeecccccceeeeeecceeEEEccCCcEEEecccceeeccCCCCCCCCCCCccccccccccccccc
Q psy12313 245 LSIKMLEKIWRPDTYILNGKQSYVHTITVPNKLLRINQDGDILYSMRLTIKANCPMSLRNFPMDTQSCPLILGSYAYPIE 324 (488)
Q Consensus 245 l~~~~~~~IW~PdI~~~Ns~~~~~~~~~~~~~~v~V~~dG~V~~~~~~~~~~~C~~dl~~FPFD~Q~C~L~~~Sw~y~~~ 324 (488)
++ .++||+||++++|++++..+..... .+.|++||+|.|.+|.++++.|+||+++||||+|+|+++|+||+|+.+
T Consensus 82 v~---~~~IW~PDi~~~N~~~~~~~~~~~~--~~~i~~~G~V~~~~~~~~~~~C~mdl~~FPfD~Q~C~l~f~S~~y~~~ 156 (369)
T 2bg9_C 82 LR---PELIWIPDIVLQNNNDGQYNVAYFC--NVLVRPNGYVTWLPPAIFRSSCPINVLYFPFDWQNCSLKFTALNYNAN 156 (369)
T ss_dssp EC---GGGSCCCCEEETTTCSSCCBSSSSC--CEEECSSSEEEECCEEEEEECCSCGGGSSSTTCCEEEEEEEESSCCTT
T ss_pred ec---HHhccCCcEeccccccccccccccc--cEEEECCccEEEecCEEEEEECcCcccCCCCCceEeeEEEEEecccCc
Confidence 99 8999999999999998876654333 467999999999999999999999999999999999999999999999
Q ss_pred ceeeeeCCCceeeccCCccccceEeecCCcccee---ecccCCCeeEEEEEEEEEeccceeEEEEehhhHHHHHhhheee
Q psy12313 325 KLVYHWTPGKSISFVPGMAISQFDFISSPKRNFT---FKRREGEFSLLQVNFNLKRHRGYFVIQVYVPCVLIVVLSWVSF 401 (488)
Q Consensus 325 ev~l~~~~~~~v~~~~~~~~~ew~l~~~~~~~~~---~~~~~~~ys~l~~~i~LkR~~~~y~~~iilP~~livllsl~sF 401 (488)
++++.| . .+.......+||++.+....... +.++++.|+++.+.|++||+++||.+++++|++++++++|++|
T Consensus 157 ~i~l~~-~---~~~~~~~~~~ew~l~~~~~~~~~~~~y~~~~~~y~~l~~~~~l~R~~~~y~~~~~iP~~liv~ls~~sF 232 (369)
T 2bg9_C 157 EISMDL-I---IDPEAFTENGEWEIIHKPAKKNIYGDKFPNGTNYQDVTFYLIIRRKPLFYVINFITPCVLISFLAALAF 232 (369)
T ss_dssp TCEEEC-C---CGGGSCCTTSSEEEEECCEEEEECCCSSCSSCCCEEEEEEEEEEECCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEE-e---cccccceeCCEEEEeeeeEEEEEEecCCCCCCCccEEEEEEEEEEccceeEEEEcchHHHHHHHHhheE
Confidence 999998 2 23344556799999987764443 3346889999999999999999999999999999999999999
Q ss_pred eccCCCCCCeEeehHHHHHHHHHHHHHHhccCCCCCC-cChhhHHHHHHHHHHHHHHHHHHHhhheeccCC
Q psy12313 402 WIHREATSDRIGLGITTVLTLSTISLDSRTDLPKVRY-ATALDWFLLMSFFYCIATILEFAAVHYFTKLCY 471 (488)
Q Consensus 402 wLp~~s~~~Ri~L~it~LLs~~~~~~~v~~~LP~~sy-lt~l~~~l~~~~i~v~~sli~~viV~~l~~~~~ 471 (488)
|+|++ .++|++++++++|++++++..+++.||++|| +|++++|+.+|++++++++++++++.++.++++
T Consensus 233 ~lp~~-~~~Rv~lgit~lLt~t~~~~~~~~~lP~~S~~vp~i~~~~~~~~~~v~~sll~~v~v~~~~~r~~ 302 (369)
T 2bg9_C 233 YLPAE-SGEKMSTAICVLLAQAVFLLLTSQRLPETALAVPLIGKYLMFIMSLVTGVVVNCGIVLNFHFRTP 302 (369)
T ss_dssp HHHHH-HTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCST
T ss_pred EecCC-CCCeEEEEhHHHHHHHHHHHHHHHhCCCCccCccHHHHHHHHHHHHHHHHHHHHhheeeeeccCC
Confidence 99999 5999999999999999999999999999997 999999999999999999999887655544443
No 9
>4aq5_C Acetylcholine receptor delta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_C
Probab=100.00 E-value=1.6e-57 Score=489.16 Aligned_cols=312 Identities=19% Similarity=0.362 Sum_probs=261.7
Q ss_pred ccchHHHHHHHHH--hcCCCCCCCCCCCCCcEEEEEEEEEeecccccccccccceeeEEEEEEEcCCcccc----CCCce
Q psy12313 169 IGKNITLVLNNLL--KNYQSSEPPNHGKGEPTIIKTNMLIRSMGPISEIDMDYSMDCYFRQYWRDSRLSFM----GPINN 242 (488)
Q Consensus 169 ~~~~~~~Ll~~Ll--~~Yd~~~rP~~~~~~pt~V~v~i~I~~I~~VDE~~~t~~v~~~l~~~W~D~RL~Wn----~~i~~ 242 (488)
..+.+++|+++|| ++||+.+||+.+.++|++|.+++.+.+|.++||++|++++++|++++|+|+||+|| +|++.
T Consensus 21 ~~~~e~rL~~~Ll~~~~Yd~~~RPv~~~~~pv~V~v~l~l~~I~~VdE~~q~~t~~vwl~q~W~D~RL~Wnp~~y~gi~~ 100 (522)
T 4aq5_C 21 GVNEEERLINDLLIVNKYNKHVRPVKHNNEVVNIALSLTLSNLISLKETDETLTTNVWMDHAWYDHRLTWNASEYSDISI 100 (522)
T ss_dssp -CTTCTTTTTTSCSTTTSCSSSCCSSSSSSCCCEEEEEEEEEEEEEETTTTEEEEEEEEEEEEECTTCCCCCCCCCTCSC
T ss_pred cCcHHHHHHHHhhcccCCCCCCCCCCCCCCcEEEEEEEEeeecccccccccEEEEEEEEeeeEeCcccCCCchhcCCceE
Confidence 3467889999999 99999999999889999999999999999999999999999999999999999999 68999
Q ss_pred EEecccccccccccCeeeecccccceeeeeecceeEEEccCCcEEEecccceeeccCCCCCCCCCCCccccccccccccc
Q psy12313 243 LSLSIKMLEKIWRPDTYILNGKQSYVHTITVPNKLLRINQDGDILYSMRLTIKANCPMSLRNFPMDTQSCPLILGSYAYP 322 (488)
Q Consensus 243 i~l~~~~~~~IW~PdI~~~Ns~~~~~~~~~~~~~~v~V~~dG~V~~~~~~~~~~~C~~dl~~FPFD~Q~C~L~~~Sw~y~ 322 (488)
++++ .++||+||++++|++++.++.....+ +.|++||+|.|.+|.++++.|+||+++||||+|+|+++|+||+|+
T Consensus 101 l~vp---~~~IW~PDi~l~N~~d~~~~~~~~~n--v~V~~dG~V~~~~~~~~~ssC~mdl~~FPfD~Q~C~L~f~S~~Y~ 175 (522)
T 4aq5_C 101 LRLR---PELIWIPDIVLQNNNDGQYNVAYFCN--VLVRPNGYVTWLPPAIFRSSCPINVLYFPFDWQNCSLKFTALNYN 175 (522)
T ss_dssp EEEC---GGGSCCCCEEETTTCSSCCBSCSSCC--EEECSSSEEEECCEEEEEECCCCTTTSCSTTCCEEEEEEEETTCC
T ss_pred Eeec---cCCEECCcEeccccccCCccccccce--EEEeCCccEEEEcccccccccccccCcCCCcCceEeEEEeccccc
Confidence 9999 89999999999999998776544333 679999999999999999999999999999999999999999999
Q ss_pred ccceeeeeCCCce-----------eeccCCccccceEeecCCccceee-c--ccCCCeeEEEEEEEEEeccceeEEEEeh
Q psy12313 323 IEKLVYHWTPGKS-----------ISFVPGMAISQFDFISSPKRNFTF-K--RREGEFSLLQVNFNLKRHRGYFVIQVYV 388 (488)
Q Consensus 323 ~~ev~l~~~~~~~-----------v~~~~~~~~~ew~l~~~~~~~~~~-~--~~~~~ys~l~~~i~LkR~~~~y~~~iil 388 (488)
.+++++.|..++. ++......++||++.+...+.... . .+++.|+++.+.|.+||++.||++++++
T Consensus 176 ~~~v~l~~~~~~~~~~~~~~~~~~~d~~~f~~~gEW~l~~~~~~~~~~~~~~~~~~~y~~l~~~~~lrR~~~~Yii~l~i 255 (522)
T 4aq5_C 176 ANEISMDLMTDTIDGKDYPIEWIIIDPEAFTENGEWEIIHKPAKKNIYGDKFPNGTNYQDVTFYLIIRRKPLFYVINFIT 255 (522)
T ss_dssp TTTCCEEC---------------CCSTTSCCTTCSEEEEECCEEEEECCCSSCSSCCCEEEEEEEEEEECCSSHHHHHHH
T ss_pred CceeEEEeccCcccccCccceeeeccHHHceecceEEEeeeEEEEEeeeccccCCCCcceEEEEEEEecccceeeeehhh
Confidence 9999999875421 223345568999999876533221 1 2355799999999999999999999999
Q ss_pred hhHHHHHhhheeeeccCCCCCCeEeehHHHHHHHHHHHHHHhccCCCCCC-cChhhHHHHHHHHHHHHHHHHHHHhhhee
Q psy12313 389 PCVLIVVLSWVSFWIHREATSDRIGLGITTVLTLSTISLDSRTDLPKVRY-ATALDWFLLMSFFYCIATILEFAAVHYFT 467 (488)
Q Consensus 389 P~~livllsl~sFwLp~~s~~~Ri~L~it~LLs~~~~~~~v~~~LP~~sy-lt~l~~~l~~~~i~v~~sli~~viV~~l~ 467 (488)
|++++++++|++||+|++ .++|+++++|++|++++++..+++.+|++|+ +|+++.|+.+|+++++++++++++|.++.
T Consensus 256 P~~liv~Ls~lsF~Lp~d-~~eRisLgIT~LLt~tvfl~~v~~~LP~tS~~vPlI~~y~~~~m~lv~lSll~tviVlnl~ 334 (522)
T 4aq5_C 256 PCVLISFLAALAFYLPAE-SGEKMSTAICVLLAQAVFLLLTSQRLPETALAVPLIGKYLMFIMSLVTGVVVNCGIVLNFH 334 (522)
T ss_dssp HHHHHHHHHHHHTTHHHH-HTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHheeecCCC-cCceEEehHHHHHHHHHHHHHHHhcCCcccCCccHHHHHHHHHHHHHHHHHHHHheEEEEE
Confidence 999999999999999999 5999999999999999999999999999997 99999999999999999999999887764
Q ss_pred cc------CCCCChhhHHHhccccc
Q psy12313 468 KL------CYPGYPSGFIERLPVIG 486 (488)
Q Consensus 468 ~~------~~~~~~~~~l~~Lp~i~ 486 (488)
++ .+++.+..|++.||++.
T Consensus 335 ~r~~~~~~mp~wvr~~fl~~l~~~l 359 (522)
T 4aq5_C 335 FRTPSTHVLSTRVKQIFLEKLPRIL 359 (522)
T ss_dssp SCCSSCC------------------
T ss_pred ccCCCCCCCChHHHHHHHHhCchhe
Confidence 33 34555667777888764
No 10
>3tlw_A GLR4197 protein, GLIC; Cys-loop receptor family, membrane protein, transport protei; HET: LMT; 2.60A {Gloeobacter violaceus} PDB: 3uu4_A* 3uub_A* 3tlv_A* 3uu6_A* 3uu5_A* 3uu3_A* 3tlu_A* 3uu8_A* 3tls_A* 3tlt_A* 3p4w_A* 3p50_A* 3eam_A* 4f8h_A* 2xq4_A 2xq5_A 2xq6_A 2xq3_A 2xq8_A 2xqa_A ...
Probab=100.00 E-value=3.9e-56 Score=452.23 Aligned_cols=289 Identities=18% Similarity=0.350 Sum_probs=257.6
Q ss_pred hcCCCCCCCCCCCCCcEEEEEEEEEeecccccccccccceeeEEEEEEEcCCcccc---CCCceEEecccccccccccCe
Q psy12313 182 KNYQSSEPPNHGKGEPTIIKTNMLIRSMGPISEIDMDYSMDCYFRQYWRDSRLSFM---GPINNLSLSIKMLEKIWRPDT 258 (488)
Q Consensus 182 ~~Yd~~~rP~~~~~~pt~V~v~i~I~~I~~VDE~~~t~~v~~~l~~~W~D~RL~Wn---~~i~~i~l~~~~~~~IW~PdI 258 (488)
+.+|++.||.. +++|++|++++.+.+|.++||++|++++++|++++|+|+||+|| .+++.+.++ .++||+||+
T Consensus 5 aq~d~~~RP~~-~~~~v~V~~~~~l~~i~~vde~~~~~t~~~~l~~~W~D~rL~w~~~~~~i~~~~~~---~~~IW~PDi 80 (321)
T 3tlw_A 5 AQDMVSPPPPI-ADEPLTVNTGIYLIESYSLDDCAETFKVNAFLSLSWKDRRLAFDPVRSGVRVKTYE---PEAIWIPEI 80 (321)
T ss_dssp ----CCCCCCS-SSCCEEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEECGGGCCCSTTTCCSSEECC---GGGSCCCCE
T ss_pred hcCCCccCCCC-CCCCEEEEEEEEEEeecceeccCcEEEEEEEEeeEEECcccCCCCccCCeeeeccc---ccCeEcCcE
Confidence 46899999985 48999999999999999999999999999999999999999999 348888888 899999999
Q ss_pred eeecccccceeeeeecceeEEEccCCcEEEecccceeeccCCCCCCCCCCCcccccccccccccccceeeeeCCCceeec
Q psy12313 259 YILNGKQSYVHTITVPNKLLRINQDGDILYSMRLTIKANCPMSLRNFPMDTQSCPLILGSYAYPIEKLVYHWTPGKSISF 338 (488)
Q Consensus 259 ~~~Ns~~~~~~~~~~~~~~v~V~~dG~V~~~~~~~~~~~C~~dl~~FPFD~Q~C~L~~~Sw~y~~~ev~l~~~~~~~v~~ 338 (488)
+++|++++. ..++..+++++||+|.|.+|.++++.|++|+++||||+|+|+++|+||+|+.+++++.|.. ++.+.
T Consensus 81 ~l~N~~~~~----~~~~~~~~v~~~G~V~~~~~~~~~~~C~~dl~~FPfD~Q~C~l~f~S~~y~~~~v~l~~~~-~~~~~ 155 (321)
T 3tlw_A 81 RFVNVENAR----DADVVDISVSPDGTVQYLERFSARVLSPLDFRRYPFDSQTLHIYLIVRSVDTRNIVLAVDL-EKVGK 155 (321)
T ss_dssp EESSBSSCC----EEEEEEEEECTTCEEEEEEEEEEEEECCCCCTTTTSCEEEEEEEEEEECCSSCCEEEEECG-GGCEE
T ss_pred Eeecccccc----cccceeEEEeCCccEEEecceEEEEEEEeecccCCCCceeEeEEEecccCChhhEEEEEcC-Ccccc
Confidence 999998876 2345678999999999999999999999999999999999999999999999999999974 34555
Q ss_pred cCCccccceEeecCCccce--eecccCCCeeEEEEEEEEEeccceeEEEEehhhHHHHHhhheeeeccCCCCCCeEeehH
Q psy12313 339 VPGMAISQFDFISSPKRNF--TFKRREGEFSLLQVNFNLKRHRGYFVIQVYVPCVLIVVLSWVSFWIHREATSDRIGLGI 416 (488)
Q Consensus 339 ~~~~~~~ew~l~~~~~~~~--~~~~~~~~ys~l~~~i~LkR~~~~y~~~iilP~~livllsl~sFwLp~~s~~~Ri~L~i 416 (488)
.+....+||++.+...... .+..+++.|+++.+.+++||+++||.+++++|++++++++|++|| |++ .++|+++++
T Consensus 156 ~~~~~~~ew~l~~~~~~~~~~~~~~~~~~y~~l~~~~~l~R~~~~y~~~~~iP~~li~~ls~~sF~-p~~-~~~Rv~l~i 233 (321)
T 3tlw_A 156 NDDVFLTGWDIESFTAVVKPANFALEDRLESKLDYQLRISRQYFSYIPNIILPMLFILFISWTAFW-STS-YEANVTLVV 233 (321)
T ss_dssp CTTCCBTTEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEECCTTHHHHTHHHHHHHHHHHGGGGG-CCC-HHHHHHHHH
T ss_pred cccccccceEEEeeEeEEeeEEecCCCCceeEEEEEEEEEEeeceeehhHHHHHHHHHHHhheeec-cCC-CCCcEEEEh
Confidence 6677899999998776433 233467899999999999999999999999999999999999999 766 489999999
Q ss_pred HHHHHHHHHHHHHhccCCCCCCcChhhHHHHHHHHHHHHHHHHHHHhhheeccCCCC---ChhhHHHh
Q psy12313 417 TTVLTLSTISLDSRTDLPKVRYATALDWFLLMSFFYCIATILEFAAVHYFTKLCYPG---YPSGFIER 481 (488)
Q Consensus 417 t~LLs~~~~~~~v~~~LP~~sylt~l~~~l~~~~i~v~~sli~~viV~~l~~~~~~~---~~~~~l~~ 481 (488)
+++|++++++..+++.+|++||+|+++.|+.+|+++++++++++++++++.+++++. +.+.|+++
T Consensus 234 t~lL~~t~~~~~~~~~lP~~s~vp~i~~~~~~~~~~v~~sll~~v~v~~l~~~~~~~~a~~~p~w~r~ 301 (321)
T 3tlw_A 234 STLIAHIAFNILVETCLPKTPYMTYTGAIIFMIYLFYFVAVIEVTVQHYLKVESQPARAASITRASRI 301 (321)
T ss_dssp HHHHHHHHHHHHHCCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhhCCCccccHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCccccccccChhhee
Confidence 999999999999999999999999999999999999999999999999998877654 34666665
No 11
>3rqw_A ELIC pentameric ligand gated ION channel from ERW chrysanthemi; membrane, transport protein; HET: ACH MES; 2.91A {Dickeya dadantii} PDB: 2yn6_A* 3rqu_A* 3uq4_A 3uq5_A 3uq7_A 2vl0_A 2yks_A 4a97_A* 4a96_A* 2yoe_A* 4a98_A*
Probab=100.00 E-value=1.3e-53 Score=433.81 Aligned_cols=284 Identities=20% Similarity=0.312 Sum_probs=242.7
Q ss_pred CCCCC--CCcEEEEEEEEEeecccccccccccceeeEEEEEEEcCCccccCCCceEEecccc-----cccccccCeeeec
Q psy12313 190 PNHGK--GEPTIIKTNMLIRSMGPISEIDMDYSMDCYFRQYWRDSRLSFMGPINNLSLSIKM-----LEKIWRPDTYILN 262 (488)
Q Consensus 190 P~~~~--~~pt~V~v~i~I~~I~~VDE~~~t~~v~~~l~~~W~D~RL~Wn~~i~~i~l~~~~-----~~~IW~PdI~~~N 262 (488)
|+.+. |+|++|.+++++.+|.++||++|++++++|++++|+|+||+| +|++.+.++... .++||+||++++|
T Consensus 2 Pv~n~s~~~pv~V~~~~~l~~i~~vde~~~~~t~~~~l~~~W~D~rL~~-~~~~~l~l~~~~~~~ip~~~IW~Pdi~l~N 80 (322)
T 3rqw_A 2 PADNAADARPVDVSVSIFINKIYGVNTLEQTYKVDGYIVAQWTGKPRKT-PGDKPLIVENTQIERWINNGLWVPALEFIN 80 (322)
T ss_dssp ---------CEEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEECSCCCC-STTSCEEEETHHHHHHHHTTCCCCCEEETT
T ss_pred CcCCCCCCCCEEEEEEEEEEeeccccccCcEEEEEEEEeeEEechhhCC-CCCCceeecchhhcccccccccCCcEEEEc
Confidence 55443 459999999999999999999999999999999999999999 467777554222 7999999999999
Q ss_pred ccccceeeeeecceeEEEccCCcEEEecccceeeccCCCCCCCCCCCcccccccccccccccceeeeeCCCceeeccCCc
Q psy12313 263 GKQSYVHTITVPNKLLRINQDGDILYSMRLTIKANCPMSLRNFPMDTQSCPLILGSYAYPIEKLVYHWTPGKSISFVPGM 342 (488)
Q Consensus 263 s~~~~~~~~~~~~~~v~V~~dG~V~~~~~~~~~~~C~~dl~~FPFD~Q~C~L~~~Sw~y~~~ev~l~~~~~~~v~~~~~~ 342 (488)
++++.. .++..+++++||+|.|.+|.++++.|++|+++||||+|+|+++|+||+|+.+++++.|.++......++
T Consensus 81 ~~~~~~----~~~~~~~i~~~G~V~~~~~~~~~~~C~~dl~~FPfD~Q~C~l~f~S~~y~~~~v~l~~~~~~~~~~~~~- 155 (322)
T 3rqw_A 81 VVGSPD----TGNKRLMLFPDGRVIYNARFLGSFSNDMDFRLFPFDRQQFVLELEPFSYNNQQLRFSDIQVYTENIDNE- 155 (322)
T ss_dssp BSSCCE----EEEEEEEECTTSEEEEEEEEEEEEECCCCCTTTTSCEEEEEEEEEESSCSSEEEEEEEEECCSCSSSSC-
T ss_pred ccCccc----ccceeEEEeCCcCEEEeeceeEEEeccccccCCCCCCcEEEEEEEEcccCcceEEEEECCCcccccCCC-
Confidence 998876 345678999999999999999999999999999999999999999999999999999864321111223
Q ss_pred cccceEe-ecCCcc------ceee--cccCCCeeEEEEEEEEEeccceeEEEEehhhHHHHHhhheeeeccCCCCCCeEe
Q psy12313 343 AISQFDF-ISSPKR------NFTF--KRREGEFSLLQVNFNLKRHRGYFVIQVYVPCVLIVVLSWVSFWIHREATSDRIG 413 (488)
Q Consensus 343 ~~~ew~l-~~~~~~------~~~~--~~~~~~ys~l~~~i~LkR~~~~y~~~iilP~~livllsl~sFwLp~~s~~~Ri~ 413 (488)
..+||++ .+...+ .... .++++.|+++.+.+.+||++.||.+++++|++++++++|++||+| + .++|++
T Consensus 156 ~~~ew~l~~~~~~~~~~~~y~~~~~~~~~~~~y~~l~~~~~l~R~~~~y~~~~~iP~~li~~ls~~sF~lp-~-~~~Rv~ 233 (322)
T 3rqw_A 156 EIDEWWIRGKASTHISDIRYDHLSSVQPNQNEFSRITVRIDAVRNPSYYLWSFILPLGLIIAASWSVFWLE-S-FSERLQ 233 (322)
T ss_dssp SSSSEEECCSCEECCEEEECTTSCCSSSSCCEEEEEEEEEEEEECCHHHHHHTHHHHHHHHHHHHGGGGCS-S-HHHHHH
T ss_pred CCCceEEEeeeEEEeeccccceeeeccCCCCCeEEEEEEEEEEEeeeeeeehHHHHHHHHHHHHHHHhccC-C-CCCcEE
Confidence 7899999 887654 3222 234789999999999999999999999999999999999999999 5 599999
Q ss_pred ehHHHHHHHHHHHHHHhccCCCCCCcChhhHHHHHHHHHHHHHHHHHHHhhheeccCC-CCChhhHHHh
Q psy12313 414 LGITTVLTLSTISLDSRTDLPKVRYATALDWFLLMSFFYCIATILEFAAVHYFTKLCY-PGYPSGFIER 481 (488)
Q Consensus 414 L~it~LLs~~~~~~~v~~~LP~~sylt~l~~~l~~~~i~v~~sli~~viV~~l~~~~~-~~~~~~~l~~ 481 (488)
++++++|++++++..+++.+|++||.|+++.|+.+|++++++++++++++.++.++++ ..+.|.|+++
T Consensus 234 l~it~lL~~~~~~~~~~~~lP~~s~vp~i~~~~~~~~~~v~~sll~~~~v~~l~~~~~~~~~~p~w~r~ 302 (322)
T 3rqw_A 234 TSFTLMLTVVAYAFYTSNILPRLPYTTVIDQMIIAGYGSIFAAILLIIFAHHRQANGVEDDLLIQRCRL 302 (322)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHSSSSSSCCCHHHHTCTT
T ss_pred EEEehHHHHHHHHHHHhhhCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccccCcchHHHH
Confidence 9999999999999999999999999999999999999999999999999999876544 3445555554
No 12
>2qc1_B Acetylcholine receptor subunit alpha; nicotinic acetylcholine receptor, glycosylated protein, beta sandwich, Cys-loop, buried hydrophilic residues; HET: NAG MAN; 1.94A {Mus musculus} PDB: 1l4w_B 1ljz_B
Probab=100.00 E-value=1.9e-42 Score=331.59 Aligned_cols=204 Identities=17% Similarity=0.315 Sum_probs=183.8
Q ss_pred cchHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEEEEEeecccccccccccceeeEEEEEEEcCCcccc----CCCceEEe
Q psy12313 170 GKNITLVLNNLLKNYQSSEPPNHGKGEPTIIKTNMLIRSMGPISEIDMDYSMDCYFRQYWRDSRLSFM----GPINNLSL 245 (488)
Q Consensus 170 ~~~~~~Ll~~Ll~~Yd~~~rP~~~~~~pt~V~v~i~I~~I~~VDE~~~t~~v~~~l~~~W~D~RL~Wn----~~i~~i~l 245 (488)
++.+++|+++||++||+.+||+.+.++|++|.+++.+.+|.++||++|.+++++|+++.|+|+||+|+ +|++.+.+
T Consensus 2 ~~~~~~L~~~Ll~~Yd~~~RP~~~~~~pv~V~~~~~l~~i~~v~e~~~~~~~~~~~~~~W~D~rL~w~~~~~~~i~~l~~ 81 (212)
T 2qc1_B 2 SEHETRLEAKLFEDYSSVVRPVEDHREIVQVTVGLQLIQLINVDEVNQIVTTNVRLKQQWVDYNLKWNPDDYGGVKKIHI 81 (212)
T ss_dssp CHHHHHHHHHHHTTCCSSSCSCSSTTSCEEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEECTTCCCCGGGGTTCCEEEE
T ss_pred ChHHHHHHHHHHHhCCCCCCCccCCCCcEEEEEEEEEecccccccCCcEEEEEEEEeeEEECCCcccChhhcCCeeEEEc
Confidence 36789999999999999999998888999999999999999999999999999999999999999999 78999999
Q ss_pred cccccccccccCeeeecccccceeeeeecceeEEEccCCcEEEecccceeeccCCCCCCCCCCCcccccccccccccccc
Q psy12313 246 SIKMLEKIWRPDTYILNGKQSYVHTITVPNKLLRINQDGDILYSMRLTIKANCPMSLRNFPMDTQSCPLILGSYAYPIEK 325 (488)
Q Consensus 246 ~~~~~~~IW~PdI~~~Ns~~~~~~~~~~~~~~v~V~~dG~V~~~~~~~~~~~C~~dl~~FPFD~Q~C~L~~~Sw~y~~~e 325 (488)
+ .++||+||++++|++++.++.... ..++|++||+|.|.+|+.+++.|+||+++||||+|+|+|+||||+|+.++
T Consensus 82 ~---~~~iW~PDi~~~N~~~~~~~~~~~--~~~~v~~~G~V~~~~~~~~~~~C~mdl~~FPfD~Q~C~l~f~S~~y~~~~ 156 (212)
T 2qc1_B 82 P---SEKIWRPDVVLYNNADGDFAIVKF--TKVLLDYTGHITWTPPAIFKSYCEIIVTHFPFDEQNCSMKLGTRTYDGSA 156 (212)
T ss_dssp C---GGGSCCCCEEECCBTTTSSCEECC--CCEEEETTCEEEECCEEEEEEEEEECCSSSSCCEEEEEEEEEESSCCTTT
T ss_pred c---hhhccCCceeccccccccccccce--eeEEEECCeeEEEEeeeEEEEEccceeecCCCCceEEeEEEEcccccCce
Confidence 9 899999999999999887665432 56899999999999999999999999999999999999999999999999
Q ss_pred eeeeeCCCceeeccCCccccceEeecCCccceeec--ccC-CCeeEEEEEEEEEecc
Q psy12313 326 LVYHWTPGKSISFVPGMAISQFDFISSPKRNFTFK--RRE-GEFSLLQVNFNLKRHR 379 (488)
Q Consensus 326 v~l~~~~~~~v~~~~~~~~~ew~l~~~~~~~~~~~--~~~-~~ys~l~~~i~LkR~~ 379 (488)
+++.|..+ .++......++||++.+......... .++ +.|+++.+.|.|||+|
T Consensus 157 v~l~~~~~-~~~~~~~~~~~ew~l~~~~~~~~~~~y~~~~~~~y~~i~~~~~l~R~p 212 (212)
T 2qc1_B 157 VAINPESD-QPDLSNFMESGEWVIKEARGWKHWVFYSCCPTTPYLDITYHFVMQRLP 212 (212)
T ss_dssp EEEEESCS-SCBCTTCCCCSSEEEEEEEEEEEEEEETTCSSCCEEEEEEEEEEEECC
T ss_pred EEEEeccc-ccchhhCccCCCEEEEEeEEEEEEEecCCCCCCCeeEEEEEEEEEECc
Confidence 99999755 45566677889999999776544333 344 8899999999999986
No 13
>4aoe_A Acetylcholine-binding protein type 2; ligand gated ION channel, LGI Cys-loop receptor, ACHBP, ACHR, acetylcholin receptor; 5.80A {Biomphalaria glabrata}
Probab=100.00 E-value=6.6e-42 Score=325.70 Aligned_cols=198 Identities=17% Similarity=0.329 Sum_probs=177.5
Q ss_pred cchHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEEEEEeecccccccccccceeeEEEEEEEcCCcccc---CCCceEEec
Q psy12313 170 GKNITLVLNNLLKNYQSSEPPNHGKGEPTIIKTNMLIRSMGPISEIDMDYSMDCYFRQYWRDSRLSFM---GPINNLSLS 246 (488)
Q Consensus 170 ~~~~~~Ll~~Ll~~Yd~~~rP~~~~~~pt~V~v~i~I~~I~~VDE~~~t~~v~~~l~~~W~D~RL~Wn---~~i~~i~l~ 246 (488)
.+++++|+++||++||+..||+.+ ++|++|.+++.+.+|.++||++|.+++++|+++.|+|+||+|| +|++.++++
T Consensus 2 ~~~e~~L~~~Ll~~Yn~~~rPv~~-~~pv~V~~~l~l~~i~~vde~~q~~~~~~wl~~~W~D~rL~W~~~~~~i~~i~v~ 80 (205)
T 4aoe_A 2 KKSREEIVKEILGRANPNNIPIVD-EQPVKVSFKYSLQDIYTADVGTDQVELGLWLVISWKDRSLSWSNECTTFNELTLP 80 (205)
T ss_dssp CHHHHHHHHHHHHTTCCSSCCCCS-SCCEEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEECCCCCCSCCCSCCCEEEEE
T ss_pred cHHHHHHHHHHHhhcCCCCCCCCC-CccEEEEEEEEEEEeeeEcccCCEEEEEEEEEEEEECCccccCCcCCCccEEEeC
Confidence 367899999999999999999988 7899999999999999999999999999999999999999998 899999999
Q ss_pred ccccccccccCeeeecccccceeeeeecceeEEEccCCcEEEecccceeeccCCCCCCCCCCCcccccccccccccccce
Q psy12313 247 IKMLEKIWRPDTYILNGKQSYVHTITVPNKLLRINQDGDILYSMRLTIKANCPMSLRNFPMDTQSCPLILGSYAYPIEKL 326 (488)
Q Consensus 247 ~~~~~~IW~PdI~~~Ns~~~~~~~~~~~~~~v~V~~dG~V~~~~~~~~~~~C~~dl~~FPFD~Q~C~L~~~Sw~y~~~ev 326 (488)
.++||+||++++|+++.... ..+..++|+++|+|.|.+|+.+++.|+|| ..||||.|+|.|+||||+|+..++
T Consensus 81 ---~~~IW~PDi~l~N~~~~~~~---~~~~~v~v~~~G~V~~~~~~~~~s~C~~d-~~fPfD~Q~C~l~fgSw~y~~~~l 153 (205)
T 4aoe_A 81 ---SKYIWLPHIEVYNSIGKPGI---HSDQLVRVYKDGTVTFVPQYTIRFSCALE-NVTTEQGAACTLKFGPWTYDVRDL 153 (205)
T ss_dssp ---GGGSCCCCCEETTBSSCCEE---CSCCEEEEETTSEEEECCEEEEEEECCCT-TSSSSSCEEEEEEEECSSCCTTTE
T ss_pred ---HHHhccccEEEecccccccc---ccceEEEEeCCcEEEEeCcEEEEEecccC-cCCCccCCeEEEEEECccCChheE
Confidence 89999999999998865432 24566899999999999999999999999 899999999999999999999999
Q ss_pred eeeeCCCceeeccCCccccceEeecCCccce--eecccCCCeeEEEEEEEEEe
Q psy12313 327 VYHWTPGKSISFVPGMAISQFDFISSPKRNF--TFKRREGEFSLLQVNFNLKR 377 (488)
Q Consensus 327 ~l~~~~~~~v~~~~~~~~~ew~l~~~~~~~~--~~~~~~~~ys~l~~~i~LkR 377 (488)
.+...+ .++......++||++++.+.+.. .+.+|+++|+.++|+|+|||
T Consensus 154 ~l~~~~--~~dl~~~~~n~EW~l~~~~~~r~~~~Y~CC~~~y~dit~~i~lrR 204 (205)
T 4aoe_A 154 VLDESQ--QVDLTTYAGGERFQLIEAKQKVNKKTYPCCPQSFEDIELRVTFKK 204 (205)
T ss_dssp EEECSS--SCBCTTSCTTCSEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEEE
T ss_pred EEecCc--ccchhccccCCcEEEEeeEEEEEEEEeCCCCCCcceEEEEEEEEE
Confidence 997543 45566677889999999876443 34567889999999999999
No 14
>4aod_A Acetylcholine-binding protein type 1; ligand gated ION channel, LGI Cys-loop receptor, ACHBP, ACHR, acetylcholine receptor; 6.00A {Biomphalaria glabrata}
Probab=100.00 E-value=7.8e-42 Score=325.43 Aligned_cols=198 Identities=15% Similarity=0.373 Sum_probs=177.8
Q ss_pred cchHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEEEEEeecccccccccccceeeEEEEEEEcCCcccc---CCCceEEec
Q psy12313 170 GKNITLVLNNLLKNYQSSEPPNHGKGEPTIIKTNMLIRSMGPISEIDMDYSMDCYFRQYWRDSRLSFM---GPINNLSLS 246 (488)
Q Consensus 170 ~~~~~~Ll~~Ll~~Yd~~~rP~~~~~~pt~V~v~i~I~~I~~VDE~~~t~~v~~~l~~~W~D~RL~Wn---~~i~~i~l~ 246 (488)
.+++++|+++||++|++..||+.+ ++|++|.+++.+.+|.++||++|.+++++|+++.|+|+||+|+ +|++.+.++
T Consensus 2 ~~~~~~L~~dLl~~Y~~~~rPv~~-~~pv~V~~~l~l~~i~~vde~~q~~t~~~wl~~~W~D~rL~W~~~~~~i~~i~v~ 80 (205)
T 4aod_A 2 RRSRSEILQDVLSRCSPLNIPIED-DQPVKVSFEYSLQKIFRADVENDEVDIGLWTTLVWKDRCLNWFNEFTSFKELTVP 80 (205)
T ss_dssp CHHHHHHHHHHHHTTCSSSCCCCS-SCCEEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEECCCCCCSCCCSCCCEEEEE
T ss_pred chhHHHHHHHHHhcCCCcCCCCCC-CccEEEEEEEEeeeeeeecccCCEEEEEEEEEEEEECCceeeCCcCCCccEeecc
Confidence 367899999999999999999987 7899999999999999999999999999999999999999998 799999999
Q ss_pred ccccccccccCeeeecccccceeeeeecceeEEEccCCcEEEecccceeeccCCCCCCCCCCCcccccccccccccccce
Q psy12313 247 IKMLEKIWRPDTYILNGKQSYVHTITVPNKLLRINQDGDILYSMRLTIKANCPMSLRNFPMDTQSCPLILGSYAYPIEKL 326 (488)
Q Consensus 247 ~~~~~~IW~PdI~~~Ns~~~~~~~~~~~~~~v~V~~dG~V~~~~~~~~~~~C~~dl~~FPFD~Q~C~L~~~Sw~y~~~ev 326 (488)
.++||+||++++|+++... ...+..++|+++|+|.|.+|+.+++.|+||+++|||| |+|.|+||||+|+..++
T Consensus 81 ---~~~IW~PDi~l~N~~~~~~---~~~~~~~~v~~~G~V~~~~~~~~~s~C~~d~~~fPfD-Q~C~l~fgSw~y~~~~i 153 (205)
T 4aod_A 81 ---IAEIWTPDIFIFDSVGAPE---IFSDKLARVSQDGTVTYVPQLKVRLSCPLADLKLETG-VTCSLKSGSWTHSTQEL 153 (205)
T ss_dssp ---GGGSCCCCEEETTBSSCCE---ECSCCEEEEETTSEEEECCEEEEEEECCCTTSSSSSC-EEEEEEEEESSCCTTTE
T ss_pred ---HHhcCcCCEEEEcccccce---eecceEEEEecCCEEEEeccEEEEEEecCccccCCCC-cEEEEEEECccccccEE
Confidence 8999999999999987643 2345568999999999999999999999999999999 99999999999999999
Q ss_pred eeeeCCCceeeccCCccccceEeecCCccce--eecccCCCeeEEEEEEEEEe
Q psy12313 327 VYHWTPGKSISFVPGMAISQFDFISSPKRNF--TFKRREGEFSLLQVNFNLKR 377 (488)
Q Consensus 327 ~l~~~~~~~v~~~~~~~~~ew~l~~~~~~~~--~~~~~~~~ys~l~~~i~LkR 377 (488)
++.+..+ ++......++||++.+...+.. .+.+|++.|+.+.|+|+|||
T Consensus 154 ~l~~~~~--~dl~~~~~n~EW~l~~~~~~~~~~~Y~cc~~~Y~~it~~~~lrR 204 (205)
T 4aod_A 154 TLEVNAK--VDLGDYASDTRFQLLNATQQVNRKQYPCCPETYEDTTLSFTFRK 204 (205)
T ss_dssp EEECSSS--CBCTTSCTTCSSEEEEEEEEEEEEEETTEEEEEEEEEEEEEEEC
T ss_pred EEEECCC--cccccccccCCEEEEeeEEEEEEEEeCCCCCCcceEEEEEEEEC
Confidence 9998643 4556677889999999776443 34456889999999999977
No 15
>3sq6_A ACHBP, neuronal acetylcholine receptor subunit alpha-7, acetylcholine-binding protein; nicotinic receptor; HET: EPJ NAG; 2.80A {Homo sapiens} SCOP: b.96.1.1 PDB: 3sq9_A*
Probab=100.00 E-value=4.5e-41 Score=320.24 Aligned_cols=194 Identities=14% Similarity=0.289 Sum_probs=174.3
Q ss_pred hHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEEEEEeecccccccccccceeeEEEEEEEcCCcccc----CCCceEEecc
Q psy12313 172 NITLVLNNLLKNYQSSEPPNHGKGEPTIIKTNMLIRSMGPISEIDMDYSMDCYFRQYWRDSRLSFM----GPINNLSLSI 247 (488)
Q Consensus 172 ~~~~Ll~~Ll~~Yd~~~rP~~~~~~pt~V~v~i~I~~I~~VDE~~~t~~v~~~l~~~W~D~RL~Wn----~~i~~i~l~~ 247 (488)
++++|+++||++||+.+||+.+. .|++|.+++.+.+|.++||++|.+++++|+++.|+|+||+|| +|++.+.++
T Consensus 2 ~e~~L~~~Ll~~Yd~~~RP~~~~-~~v~V~~~~~l~~i~~v~e~~~~~t~~~~~~~~W~D~rL~w~~~~~~~i~~i~~~- 79 (204)
T 3sq6_A 2 FQRKLYKELVKNYNPDVIPTQRD-RPVTVYFSLSLLQIMDVDEKNQVVDVVFWLQMSWTDHYLQWNVSEYPGVKQVSVP- 79 (204)
T ss_dssp CCCHHHHHHTTTCCTTSCCCCSS-CCEEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEECGGGCCCTTTSSSCCEEEEE-
T ss_pred HHHHHHHHHHhcCCCCCCCCCCC-CcEEEEEEEEhhheeehhccccEEEEEEeeeeEEECCCcccChHHcCCccEEEcC-
Confidence 46799999999999999999886 999999999999999999999999999999999999999999 689999999
Q ss_pred cccccccccCeeeecccc--cceeeeeecceeEEEccCCcEEEecccceeeccCCCCCCCCCCCcccccccccccccccc
Q psy12313 248 KMLEKIWRPDTYILNGKQ--SYVHTITVPNKLLRINQDGDILYSMRLTIKANCPMSLRNFPMDTQSCPLILGSYAYPIEK 325 (488)
Q Consensus 248 ~~~~~IW~PdI~~~Ns~~--~~~~~~~~~~~~v~V~~dG~V~~~~~~~~~~~C~~dl~~FPFD~Q~C~L~~~Sw~y~~~e 325 (488)
.++||+||++++|+++ +.++. ..++|+++|+|.|.+|+++++.|+||+ +||||+|+|+|.|+||+|+..+
T Consensus 80 --~~~iW~PDi~~~N~~~~~~~~~~-----~~v~v~~~G~V~~~~~~~~~~~C~mdl-~fPfD~Q~C~l~f~S~~y~~~~ 151 (204)
T 3sq6_A 80 --ISSLWVPDLAAYNAISKPEVLTP-----QLALVNSSGHVQYLPSIRQRFSCDVSG-VDTESGATCKLKFGSWTHHSRE 151 (204)
T ss_dssp --GGGSCCCCEEETTBSSCCEECSC-----CEEEEETTSEEEECCEEEEEEECCCGG-GSSSSCEEEEEEEEESSCCTTT
T ss_pred --HHHCcCCCEEeEcccccCCcccc-----cEEEEEeCCEEEEecCeeEEEeccccc-cCCCCCcEEEEEEEeecccCeE
Confidence 8999999999999988 54432 268999999999999999999999999 9999999999999999999999
Q ss_pred eeeeeCCCceeeccCCccccceEeecCCccceee--cccCCCeeEEEEEEEEEec
Q psy12313 326 LVYHWTPGKSISFVPGMAISQFDFISSPKRNFTF--KRREGEFSLLQVNFNLKRH 378 (488)
Q Consensus 326 v~l~~~~~~~v~~~~~~~~~ew~l~~~~~~~~~~--~~~~~~ys~l~~~i~LkR~ 378 (488)
+++.+.. .+......++||++.+...+.... .+|++.|+.+.+.|.+||+
T Consensus 152 v~l~~~~---~~~~~~~~~~eW~l~~~~~~~~~~~y~~c~~~y~~i~~~~~lrRr 203 (204)
T 3sq6_A 152 LDLQMQE---ADISGYIPYSRFELVGVTQKRSERFYECCKEPYPDVTFTVTFRKK 203 (204)
T ss_dssp EEEECCC---CCCTTSCSSSSEEEEEEEEEEEEEECSSSSSEEEEEEEEEEEEEC
T ss_pred EEEEecc---CCHHHcccCCCEEEEEeEEEEEEEeeCCCCCCcceEEEEEEEEEC
Confidence 9998754 334456678999999987654443 3457899999999999997
No 16
>2wn9_A Soluble acetylcholine receptor; 4-0H-DMXBA, acetylcholine binding protein; HET: ZY5 NAG BMA MAN; 1.75A {Aplysia californica} PDB: 2wnj_A* 2wzy_A* 2x00_A* 3peo_A* 2pgz_A* 2ph9_A* 4dbm_A* 3c84_A* 2byq_A* 2byr_A* 2bys_A* 2wnc_A* 2wnl_A* 3c79_A* 2byn_A* 3pmz_A* 2x00_D* 2xnv_A* 2xnt_A* 2xnu_A* ...
Probab=100.00 E-value=1.8e-39 Score=314.25 Aligned_cols=207 Identities=13% Similarity=0.263 Sum_probs=178.5
Q ss_pred ccchHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEEEEEeecccccccccccceeeEEEEEEEcCCcccc----CCCceEE
Q psy12313 169 IGKNITLVLNNLLKNYQSSEPPNHGKGEPTIIKTNMLIRSMGPISEIDMDYSMDCYFRQYWRDSRLSFM----GPINNLS 244 (488)
Q Consensus 169 ~~~~~~~Ll~~Ll~~Yd~~~rP~~~~~~pt~V~v~i~I~~I~~VDE~~~t~~v~~~l~~~W~D~RL~Wn----~~i~~i~ 244 (488)
.+..+++|+++||++||+. |+.+.++|++|.+++.+.+|.++||++|.+++++|+++.|+|+||+|| +|++.+.
T Consensus 11 ~~~~~~~L~~~Ll~~Yd~~--P~~~~~~pv~V~~~~~l~~i~~v~e~~~~~~~~~~l~~~W~D~rL~w~~~~y~~i~~l~ 88 (228)
T 2wn9_A 11 SQANLMRLKSDLFNRSPMY--PGPTKDDPLTVTLGFTLQDIVKADSSTNEVDLVYYEQQRWKLNSLMWDPNEYGNITDFR 88 (228)
T ss_dssp HHHHHHHHHHHHHTSSCCC--CCCBTTBCEEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEEEEECCGGGGTTCCEEE
T ss_pred CCcHHHHHHHHHHhhcCCC--cccCCCCCEEEEEEEEhhHhhhhhccccEEEEEEEEEEEEECCCccCCchhcCCeeEEE
Confidence 3478899999999999999 888778999999999999999999999999999999999999999998 7899999
Q ss_pred ecccccccccccCeeeecccccceeeeeecceeEEEccCCcEEEecccceeeccC---CCCCCCCCCCcccccccccccc
Q psy12313 245 LSIKMLEKIWRPDTYILNGKQSYVHTITVPNKLLRINQDGDILYSMRLTIKANCP---MSLRNFPMDTQSCPLILGSYAY 321 (488)
Q Consensus 245 l~~~~~~~IW~PdI~~~Ns~~~~~~~~~~~~~~v~V~~dG~V~~~~~~~~~~~C~---~dl~~FPFD~Q~C~L~~~Sw~y 321 (488)
++ .++||+||++++|++++.++.. +..++|+++|+|.|.+|+++++.|+ ||++ |+|+|+|+||||+|
T Consensus 89 ~~---~~~IW~PDi~l~N~~~~~~~~~---~~~v~i~~~G~V~~~~~~~~~~~C~~~~mdl~----D~Q~C~l~f~Sw~y 158 (228)
T 2wn9_A 89 TS---AADIWTPDITAYSSTRPVQVLS---PQIAVVTHDGSVMFIPAQRLSFMCDPTGVDSE----EGATCAVKFGSWVY 158 (228)
T ss_dssp EE---GGGSCCCCEEESSBSSCCEECS---CCEEEEETEEEEEECCEEEEEEECCCTTTTST----TCEEEEEEEEESSC
T ss_pred ec---HHHccCCceecccccccccccc---cceEEEeCCeEEEEeCCEEEEEECCCCCCCCC----cCcEeeEEEEeecc
Confidence 99 8999999999999999876643 6679999999999999999999999 9999 99999999999999
Q ss_pred cccceeeeeCCCceeeccCCccccceEeecCCcccee--ecccCCCeeEEEEEEEEEeccceeEEEEeh
Q psy12313 322 PIEKLVYHWTPGKSISFVPGMAISQFDFISSPKRNFT--FKRREGEFSLLQVNFNLKRHRGYFVIQVYV 388 (488)
Q Consensus 322 ~~~ev~l~~~~~~~v~~~~~~~~~ew~l~~~~~~~~~--~~~~~~~ys~l~~~i~LkR~~~~y~~~iil 388 (488)
+..++.+.|..+ .++......++||++.+....... +.++++.|+++.+.|.|||+++||++++++
T Consensus 159 ~~~~i~l~~~~~-~~~~~~~~~~~ew~l~~~~~~~~~~~y~~~~~~y~~l~~~~~l~R~~~fYii~lil 226 (228)
T 2wn9_A 159 SGFEIDLKTDTD-QVDLSSYYASSKYEILSATQTRQVQHYSCCPEPYIDVNLVVKFRERRAGNGFFRNL 226 (228)
T ss_dssp CTTTEEEECSCS-BCBCTTCCTTCSEEEEEEEEEEEEECCSSCSSCEEEEEEEEEEEECC---------
T ss_pred cccEEEEEecCC-ccchhhceecCCEEEEEEEEEEEEEeecCCCCCeeEEEEEEEEEEeccceEEEEEE
Confidence 999999999764 455556677899999987764433 334578999999999999999999998875
No 17
>4afh_A ACHBP; acetylcholine-binding protein, nicotinic receptor, ION chann; HET: NAG BMA MAN L0B; 1.88A {Capitella teleta} PDB: 4afg_A* 4b5d_A*
Probab=100.00 E-value=7.4e-40 Score=317.09 Aligned_cols=205 Identities=16% Similarity=0.262 Sum_probs=175.9
Q ss_pred cchHHHHHHHHHhcCCCCCC---CCCCCCCcEEEEEEEEEeeccccccc----ccccceeeEEEEEEEcCCcccc----C
Q psy12313 170 GKNITLVLNNLLKNYQSSEP---PNHGKGEPTIIKTNMLIRSMGPISEI----DMDYSMDCYFRQYWRDSRLSFM----G 238 (488)
Q Consensus 170 ~~~~~~Ll~~Ll~~Yd~~~r---P~~~~~~pt~V~v~i~I~~I~~VDE~----~~t~~v~~~l~~~W~D~RL~Wn----~ 238 (488)
+..+++|+++||++||+.+| |+.+.++|++|.+++.+.+|.+|||+ +|.+++++|+++.|+|+||+|| +
T Consensus 3 ~~~e~~L~~~Ll~~Yd~~~R~~~P~~~~~~pv~V~~~l~l~~i~~v~E~~~~~~~~~t~~~~l~~~W~D~rL~wnp~~~~ 82 (230)
T 4afh_A 3 GLMAKRLRRELLNTYEQLGKSGLPFLDDIGKVDVKFGLSLQLLKSIEQRGMGFNSIGTFKAIVKLSWVDTILRWDPEPPF 82 (230)
T ss_dssp HHHHHHHHHHHHHHHHHHCSCSCSCSSBCCCEEEEEEEEEEEEEEEEECTTSSEEEEEEEEEEEEEEECGGGCCCCCTTS
T ss_pred chHHHHHHHHHHhhcChhhccCCCCCCCCCCEEEEEEEEHhHhhhhhhcccccCcEEEEEEEEeeEEECccccCCcccCC
Confidence 46789999999999999999 99988899999999999999999999 9999999999999999999999 6
Q ss_pred CCceEEecccccccccccCeeeecccccceeeeeecceeEEEccCCcEEEecccceeeccCCCCCCCCCCCccccccccc
Q psy12313 239 PINNLSLSIKMLEKIWRPDTYILNGKQSYVHTITVPNKLLRINQDGDILYSMRLTIKANCPMSLRNFPMDTQSCPLILGS 318 (488)
Q Consensus 239 ~i~~i~l~~~~~~~IW~PdI~~~Ns~~~~~~~~~~~~~~v~V~~dG~V~~~~~~~~~~~C~~dl~~FPFD~Q~C~L~~~S 318 (488)
|++.+.++ .++||+||++++|++++..+.. ....++|++||+|.|.+|+++++.|+| |||+|+|+|+|||
T Consensus 83 ~i~~i~l~---~~~IW~PDi~l~N~~~~~~~~~--~~~~v~v~~~G~V~~~~~~~~~s~C~m-----PfD~Q~C~l~f~S 152 (230)
T 4afh_A 83 DFQKIEIS---PDEIWTPDIKLFNSVDLDMTLD--RTTQAIVFSNGTVLWIPPAVLKVLCVS-----QDDVDSCHFQFGS 152 (230)
T ss_dssp CCSEEEEC---GGGSCCCCEEETTCSSSSCEEC--TTSCEEEETTSEEEECCEEEEEEEEEE-----ETTEEEEEEEEEE
T ss_pred CeeEEEec---cCCEECCcEEEEeccccccccc--ccceEEEEcCCEEEEecCEEEEEECCC-----CCCcccCCEeecc
Confidence 89999999 8999999999999999877643 234588999999999999999999999 9999999999999
Q ss_pred ccccccceeeeeCCCc-eeeccCCccccceEeecCCccceee--cccCCCeeEEEEEEEEEeccceeEEEE
Q psy12313 319 YAYPIEKLVYHWTPGK-SISFVPGMAISQFDFISSPKRNFTF--KRREGEFSLLQVNFNLKRHRGYFVIQV 386 (488)
Q Consensus 319 w~y~~~ev~l~~~~~~-~v~~~~~~~~~ew~l~~~~~~~~~~--~~~~~~ys~l~~~i~LkR~~~~y~~~i 386 (488)
|+|+.+++++.|..+. .++. ....++ |++.+...+.... .+|++.|+.+.|.|.|||++.+|+.+-
T Consensus 153 ~~y~~~~v~l~~~~~~~~~d~-~~~~n~-W~l~~~~~~~~~~~y~cc~~~y~~i~f~~~irRrpl~~~~~~ 221 (230)
T 4afh_A 153 WVYSVDEVDIHFMDDKAEVLL-DFYQDS-LEILENSAQRQEVVYPCCESAYVEMKYLLALRSENGNSTYSR 221 (230)
T ss_dssp SSCCTTTEEEEEGGGCCSCBC-TTCCCC-CCEEEEEEEEEEECCTTCSSCEEEEEEEEEEECC--------
T ss_pred ccccCceEEEEECCCCcccce-eeecCc-EEEEEEEEEEEEEecCCCCCCccEEEEEEEEEEeechhhccc
Confidence 9999999999987532 3444 566778 9999887654333 346789999999999999999998753
No 18
>1uw6_A Acetylcholine-binding protein; pentamer, IGG fold, nicotine, glycoprotein; HET: NCT; 2.2A {Lymnaea stagnalis} SCOP: b.96.1.1 PDB: 1i9b_A* 1ux2_A* 3u8l_A* 1yi5_A 1uv6_A* 3u8k_A* 3u8j_B* 3u8m_A* 3u8n_A* 2zju_A* 2zjv_A*
Probab=100.00 E-value=8.9e-39 Score=305.93 Aligned_cols=199 Identities=15% Similarity=0.341 Sum_probs=175.5
Q ss_pred hHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEEEEEeecccccccccccceeeEEEEEEEcCCcccc----CCCceEEecc
Q psy12313 172 NITLVLNNLLKNYQSSEPPNHGKGEPTIIKTNMLIRSMGPISEIDMDYSMDCYFRQYWRDSRLSFM----GPINNLSLSI 247 (488)
Q Consensus 172 ~~~~Ll~~Ll~~Yd~~~rP~~~~~~pt~V~v~i~I~~I~~VDE~~~t~~v~~~l~~~W~D~RL~Wn----~~i~~i~l~~ 247 (488)
.+++|+++||++||+.+||+ +.+.|++|.+++.+.+|.++||++|.+++++|+++.|+|+||+|+ +| .+.++
T Consensus 3 ~~~~ll~~Ll~~Yd~~~RP~-~~~~~~~V~~~~~l~~i~~v~e~~~~~~~~~~~~~~W~D~rL~w~~~~~~~--~l~~~- 78 (211)
T 1uw6_A 3 DRADILYNIRQTSRPDVIPT-QRDRPVAVSVSLKFINILEVNEITNEVDVVFWQQTTWSDRTLAWNSSHSPD--QVSVP- 78 (211)
T ss_dssp CHHHHHHHHHHHCCTTSCCC-CTTCCEEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEECGGGCCCCTTSCS--EEEEE-
T ss_pred cHHHHHHHHHHcCCCcCCCC-CCCCcEEEEEEEEHHHhhchhhhCcEEEEEEEEEeEeECcccccChhhcCC--eEEcc-
Confidence 47899999999999999999 678999999999999999999999999999999999999999999 34 78888
Q ss_pred cccccccccCeeeecccccceeeeeecceeEEEccCCcEEEecccceeeccC---CCCCCCCCCCccccccccccccccc
Q psy12313 248 KMLEKIWRPDTYILNGKQSYVHTITVPNKLLRINQDGDILYSMRLTIKANCP---MSLRNFPMDTQSCPLILGSYAYPIE 324 (488)
Q Consensus 248 ~~~~~IW~PdI~~~Ns~~~~~~~~~~~~~~v~V~~dG~V~~~~~~~~~~~C~---~dl~~FPFD~Q~C~L~~~Sw~y~~~ 324 (488)
.++||+||++++|++++. . ...+ ..++|++||+|.|.+|+++++.|+ ||++ |+|+|+++||||+|+.+
T Consensus 79 --~~~iW~PDi~~~N~~~~~-~-~~~~-~~~~i~~~G~V~~~~~~~~~~~C~~~~mdl~----D~Q~C~l~f~S~~y~~~ 149 (211)
T 1uw6_A 79 --ISSLWVPDLAAYNAISKP-E-VLTP-QLARVVSDGEVLYMPSIRQRFSCDVSGVDTE----SGATCRIKIGSWTHHSR 149 (211)
T ss_dssp --GGGSCCCCEEETTBCSCC-E-ECSC-CEEEEETTSEEEECCEEEEEEECCCTTTTSS----SCEEEEEEEEESSCCTT
T ss_pred --HHHccCCCEeeecccccc-c-ccee-eEEEEeCCceEEEeCCEEEEEECCCCCCCCC----cceEeEEEEEcccccCc
Confidence 899999999999998887 3 3333 679999999999999999999999 9999 99999999999999999
Q ss_pred ceeeeeCCCceeeccCCcc-ccceEeecCCcccee--ecccCCCeeEEEEEEEEEeccceeEE
Q psy12313 325 KLVYHWTPGKSISFVPGMA-ISQFDFISSPKRNFT--FKRREGEFSLLQVNFNLKRHRGYFVI 384 (488)
Q Consensus 325 ev~l~~~~~~~v~~~~~~~-~~ew~l~~~~~~~~~--~~~~~~~ys~l~~~i~LkR~~~~y~~ 384 (488)
++++.|..+ .++...... ++||++.+....... +.++++.|+++.+.|.|||+++||++
T Consensus 150 ~i~l~~~~~-~~~~~~~~~~~~ew~l~~~~~~~~~~~y~~~~~~y~~l~~~~~l~R~~~yyil 211 (211)
T 1uw6_A 150 EISVDPTTE-NSDDSEYFSQYSRFEILDVTQKKNSVTYSCCPEAYEDVEVSLNFRKKGRSEIL 211 (211)
T ss_dssp TEEEEECCC-SSCTTTTSCTTSSEEEEEEEEEEEEEECTTCSSEEEEEEEEEEEEECCCC---
T ss_pred eEEEEeccc-ccchhhhcccCCCEEEEeeEEEEEEEEeCCCCCCcceEEEEEEEEEccceeEC
Confidence 999999754 455666777 999999987764333 33458899999999999999999974
No 19
>3igq_A GLR4197 protein; plgic Cys-loop, membrane protein, transport protein; 2.30A {Gloeobacter violaceus}
Probab=100.00 E-value=1.7e-37 Score=294.83 Aligned_cols=188 Identities=18% Similarity=0.276 Sum_probs=155.7
Q ss_pred CCCCCCCCCCCcEEEEEEEEEeecccccccccccceeeEEEEEEEcCCcccc---CCCceEEecccccccccccCeeeec
Q psy12313 186 SSEPPNHGKGEPTIIKTNMLIRSMGPISEIDMDYSMDCYFRQYWRDSRLSFM---GPINNLSLSIKMLEKIWRPDTYILN 262 (488)
Q Consensus 186 ~~~rP~~~~~~pt~V~v~i~I~~I~~VDE~~~t~~v~~~l~~~W~D~RL~Wn---~~i~~i~l~~~~~~~IW~PdI~~~N 262 (488)
+++||+ +.++|++|.+++.+.+|.+|||++|.+++++|+++.|+|+||+|| +|++.+.++ .++||+||++++|
T Consensus 5 ~~~RP~-~~~~pv~V~~~l~l~~i~~vdE~~~~~t~~~~l~~~W~D~rL~w~~~~~~i~~~~~~---~~~IW~PDi~l~N 80 (201)
T 3igq_A 5 VSPPPP-IADEPLTVNTGIYLIECYSLDDKAETFKVNAFLSLSWKDRRLAFDPVRSGVRVKTYE---PEAIWIPEIRFVN 80 (201)
T ss_dssp CSCCCC-BTTBCEEEEEEEEEEEEECCCTTSSEEEEEEEEEEEEECGGGCCCHHHHTCSCEECC---GGGSCCCCEEESS
T ss_pred cccCCC-CCCCCEEEEEEEEeeecccCcccCCEEEEEEEEeeEEECCccCCCCcCCCEeEeccc---ccCcCccCEEEEc
Confidence 678999 558999999999999999999999999999999999999999999 589999999 8999999999999
Q ss_pred ccccceeeeeecceeEEEccCCcEEEecccceeeccCCCCCCCCCCCcccccccccccccccceeeeeCCCceeeccCCc
Q psy12313 263 GKQSYVHTITVPNKLLRINQDGDILYSMRLTIKANCPMSLRNFPMDTQSCPLILGSYAYPIEKLVYHWTPGKSISFVPGM 342 (488)
Q Consensus 263 s~~~~~~~~~~~~~~v~V~~dG~V~~~~~~~~~~~C~~dl~~FPFD~Q~C~L~~~Sw~y~~~ev~l~~~~~~~v~~~~~~ 342 (488)
+++... ..+..++|+++|+|.|.+|+.+++.|+||+++||||+|+|+|+|+||+|+.+++++.|.. +.++..+..
T Consensus 81 ~~~~~~----~~~~~v~v~~~G~V~~~~~~~~~s~C~mdl~~FPfD~Q~C~l~f~S~~y~~~~v~l~~~~-~~~~~~~~~ 155 (201)
T 3igq_A 81 VENARD----ADVVDISVSPDGTVQYLERFSARVLSPLDGRRTESDSQTLHIYLIVRSVDTRNIVLAVDL-EKVGKNDDV 155 (201)
T ss_dssp BSSSCE----EEEEEEEECTTCEEEEEEEEEEEEECCCC------CEEEEEEEEEECCCSSCCEEEEECG-GGCEESCSE
T ss_pred cccccc----ccceEEEEeCCCcEEEecceeEEEecCcccccCCCCccEeeEEEeccCCCceEEEEEecC-CccccccCc
Confidence 976542 245678999999999999999999999999999999999999999999999999999974 356666778
Q ss_pred cccceEeecCCcccee--ecccCCCeeEEEEEEEEEecccee
Q psy12313 343 AISQFDFISSPKRNFT--FKRREGEFSLLQVNFNLKRHRGYF 382 (488)
Q Consensus 343 ~~~ew~l~~~~~~~~~--~~~~~~~ys~l~~~i~LkR~~~~y 382 (488)
.++||++.+....... +.+|+++|+.+.|.|.+||+.+.+
T Consensus 156 ~~~ew~l~~~~~~~~~~~y~cc~~~y~~i~f~i~irR~~~~~ 197 (201)
T 3igq_A 156 FLTGWDIESFTAVVKPANFALEDRLESKLDYQLRISRQGGHH 197 (201)
T ss_dssp EETTEEEEEEEEEEEC--------CCCEEEEEEEEEEC----
T ss_pred ccCCeEEEeeEEEEEEEEeCCCCCccCeEEEEEEEEECCCCC
Confidence 8999999997764433 445678999999999999998754
No 20
>2bj0_A Acetylcholine-binding protein; 3D-structure, glycoprotein, glycprotein, IGG fold, immunoglobulin domain, pentamer, signal; HET: CXS; 2.0A {Bulinus truncatus}
Probab=100.00 E-value=8.2e-37 Score=290.60 Aligned_cols=193 Identities=14% Similarity=0.298 Sum_probs=173.1
Q ss_pred HHHHHHHHhcCCCCCCCCCCCCCcEEEEEEEEEeecccccccccccceeeEEEEEEEcCCc-ccc--CCCceEEeccccc
Q psy12313 174 TLVLNNLLKNYQSSEPPNHGKGEPTIIKTNMLIRSMGPISEIDMDYSMDCYFRQYWRDSRL-SFM--GPINNLSLSIKML 250 (488)
Q Consensus 174 ~~Ll~~Ll~~Yd~~~rP~~~~~~pt~V~v~i~I~~I~~VDE~~~t~~v~~~l~~~W~D~RL-~Wn--~~i~~i~l~~~~~ 250 (488)
++|+++|+ ||+.+||+. .++|++|.+++.+.+|.++||++|.+++++|+++.|+|+|| +|+ +|++.+.++ .
T Consensus 4 ~~ll~~l~--~d~~~RP~~-~~~p~~V~~~~~l~~i~~v~e~~~~~~~~~~~~~~W~D~rL~~w~~~~~i~~~~~~---~ 77 (203)
T 2bj0_A 4 WTLLNQIT--GESDVIPLS-NNTPLNVSLNFKLMNIVEADTEKDQVEVVLWTQASWKVPYYSSLLSSSSLDQVSLP---V 77 (203)
T ss_dssp HHHHHHHH--HTTTSCCCC-SSCCEEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEECGGGGGGTTTSSCSEEEEE---G
T ss_pred HHHHHHHh--cCCccCCCC-CCCCEEEEEEEEEEeEeeecCCCCEEEEEEEEEeEEECcchhccCccCCceEEEEc---h
Confidence 57889998 499999998 68999999999999999999999999999999999999999 999 578999999 8
Q ss_pred ccccccCeeeecc-cccceeeeeecceeEEEccCCcEEEecccceeeccCC-CCCCCCCCCcccccccccccccccceee
Q psy12313 251 EKIWRPDTYILNG-KQSYVHTITVPNKLLRINQDGDILYSMRLTIKANCPM-SLRNFPMDTQSCPLILGSYAYPIEKLVY 328 (488)
Q Consensus 251 ~~IW~PdI~~~Ns-~~~~~~~~~~~~~~v~V~~dG~V~~~~~~~~~~~C~~-dl~~FPFD~Q~C~L~~~Sw~y~~~ev~l 328 (488)
++||+||++++|+ +++.++.. ..++|++||+|.|.+|+++++.|+| |+++ ||+|+|+++||||+|+.+++++
T Consensus 78 ~~iW~PDi~~~N~~~~~~~~~~----~~v~i~~~G~V~~~~~~~~~~~C~m~dl~~--fD~Q~C~l~f~S~~y~~~~v~l 151 (203)
T 2bj0_A 78 SKMWTPDLSFYNAIAAPELLSA----DRVVVSKDGSVIYVPSQRVRFTCDLINVDT--EPGATCRIKVGSWTHDNKQFAL 151 (203)
T ss_dssp GGSCCCCEEETTCSSCCEECSC----CEEEEETTSEEEECCEEEEEEECCCTTTTS--SSCEEEEEEEEESSCCTTTEEE
T ss_pred hhccCCCccccccccccccccc----eEEEEeCCcEEEEecceEEEEEccccccCc--cccceeeEEEEcccccCcEEEE
Confidence 9999999999999 88876643 5689999999999999999999999 9998 9999999999999999999999
Q ss_pred eeCCCceeeccCCccccceEeecCCccceee--cccCCCeeEEEEEEEEEec
Q psy12313 329 HWTPGKSISFVPGMAISQFDFISSPKRNFTF--KRREGEFSLLQVNFNLKRH 378 (488)
Q Consensus 329 ~~~~~~~v~~~~~~~~~ew~l~~~~~~~~~~--~~~~~~ys~l~~~i~LkR~ 378 (488)
.|..+.+++..+...++||++.+........ .++++.|+++.+.|.|||+
T Consensus 152 ~~~~~~~~~~~~~~~~~ew~l~~~~~~~~~~~y~~~~~~y~~l~~~~~l~R~ 203 (203)
T 2bj0_A 152 ITGEEGVVNIAEYFDSPKFDLLSATQSLNRKKYSCCENMYDDIEITFAFRKK 203 (203)
T ss_dssp EECTTTTSCTTTTCCCSSEEEEEEEEEEEEEECTTCSSEEEEEEEEEEEEEC
T ss_pred EecCCCccchhcceecCCEEEEEeEEEEEEEecCCCCCCeeEEEEEEEEEEC
Confidence 9975433666677889999999877644443 3457899999999999996
No 21
>2ksr_A Neuronal acetylcholine receptor subunit beta-2; nicotinic acetylcholine receptors, transmembrane domain, HFI junction, cell membrane; NMR {Homo sapiens} PDB: 2lm2_A
Probab=99.79 E-value=1.1e-20 Score=172.50 Aligned_cols=112 Identities=18% Similarity=0.304 Sum_probs=90.5
Q ss_pred cccCCCeeEEEEEEEEEeccceeEEEEehhhHHHHHhhheeeeccCCCCCCeEeehHHHHHHHHHHHHHHhccCCCCC-C
Q psy12313 360 KRREGEFSLLQVNFNLKRHRGYFVIQVYVPCVLIVVLSWVSFWIHREATSDRIGLGITTVLTLSTISLDSRTDLPKVR-Y 438 (488)
Q Consensus 360 ~~~~~~ys~l~~~i~LkR~~~~y~~~iilP~~livllsl~sFwLp~~s~~~Ri~L~it~LLs~~~~~~~v~~~LP~~s-y 438 (488)
..++++|+++.+.+.+||++.||.+++++|++++++++|++||+|+++ ++|++++++++|++++++..+++.+|++| +
T Consensus 9 ~~~~~~y~~i~~~~~lrR~~~~Y~~~liiP~~li~~Ls~~~F~Lp~ds-geRvslgit~LLs~tvfl~~v~~~lP~tS~~ 87 (164)
T 2ksr_A 9 TSVDLGTENLYFQSNARRKPLFYTINLIIPCVLITSLAILVFYLPSDC-GEKMTLCISVLLALTVFLLLISKIVPPTSLD 87 (164)
T ss_dssp ----------------CCCTHHHHHHTHHHHHHHHHHHHHHHTSCCCS-HHHHHHHHHHHHHHHHHHHHHHTTCCSSCTT
T ss_pred CCCCCCcceEEEEEEEEEeehheeeeehhhHHHHHHHHhheeEcCCCC-CCeEEEeeehHHHHHHHHHHHHHHCCCCccc
Confidence 346788999999999999999999999999999999999999999997 99999999999999999999999999998 9
Q ss_pred cChhhHHHHHHHHHHHHHHHHHHHhhheeccCCC
Q psy12313 439 ATALDWFLLMSFFYCIATILEFAAVHYFTKLCYP 472 (488)
Q Consensus 439 lt~l~~~l~~~~i~v~~sli~~viV~~l~~~~~~ 472 (488)
.|++++|+..|++++++++++++++.++.++++.
T Consensus 88 vPlI~~y~~~~m~~v~~sll~tv~Vl~~~~r~~~ 121 (164)
T 2ksr_A 88 VPLVGKYLMFTMVLVTFSIVTSVCVLNVHHRSPT 121 (164)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHTSSCC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCC
Confidence 9999999999999999999999988776555443
No 22
>2lkg_A Acetylcholine receptor; transmembrane domain, SIGN protein; NMR {Torpedo marmorata} PDB: 2lkh_A
Probab=99.73 E-value=2.4e-20 Score=165.98 Aligned_cols=104 Identities=14% Similarity=0.180 Sum_probs=97.7
Q ss_pred CCCeeEEEEEEEEEeccceeEEEEehhhHHHHHhhheeeeccCCCCCCeEeehHHHHHHHHHHHHHHhccCCCCC-CcCh
Q psy12313 363 EGEFSLLQVNFNLKRHRGYFVIQVYVPCVLIVVLSWVSFWIHREATSDRIGLGITTVLTLSTISLDSRTDLPKVR-YATA 441 (488)
Q Consensus 363 ~~~ys~l~~~i~LkR~~~~y~~~iilP~~livllsl~sFwLp~~s~~~Ri~L~it~LLs~~~~~~~v~~~LP~~s-ylt~ 441 (488)
.|.|+++.+.|.+||++.||.+++++|++++++++|++||+|+++ ++|++++++++|++++++..+++.+|++| +.|+
T Consensus 33 ~g~y~~l~~~f~lrR~~~~y~~~liiP~~li~~Ls~~~F~Lp~ds-geRvslgit~lLs~tvfl~~v~~~lP~tS~~vPl 111 (140)
T 2lkg_A 33 AGRLIELSQEGGGGGGPLYFVVNVIEPCKKFSELTGLVFYLPTDS-GEKMTESKSVLKSLTEKLKKIVELIPSTSSAVPL 111 (140)
T ss_dssp HHHHHHHHHTSCSSSCTHHHHHHHHHHHHHHHTHHHHSSSSCCSS-SHHHHHHHHHHHHHHHHHHGGGGTCTTTGGGHHH
T ss_pred CCcEEEEEEEEEEEEcceeeeehhhhHHHHHHHHHhheeEcCCCC-CCEEEEeeehHHHHHHHHHHHHHhCCCccccccH
Confidence 456789999999999999999999999999999999999999996 99999999999999999999999999998 9999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhee
Q psy12313 442 LDWFLLMSFFYCIATILEFAAVHYFT 467 (488)
Q Consensus 442 l~~~l~~~~i~v~~sli~~viV~~l~ 467 (488)
+++|+..|++++++++++++++.++.
T Consensus 112 I~~y~~~~~~~v~~sll~tv~Vln~~ 137 (140)
T 2lkg_A 112 IGKYMLFTKEFVESSIKITEEVINTH 137 (140)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhheeee
Confidence 99999999999999999988775543
No 23
>2lly_A Neuronal acetylcholine receptor subunit alpha-4; transmembrane domain, transport PROT; NMR {Homo sapiens}
Probab=99.71 E-value=1.8e-18 Score=153.73 Aligned_cols=97 Identities=21% Similarity=0.393 Sum_probs=90.0
Q ss_pred EEEeccceeEEEEehhhHHHHHhhheeeeccCCCCCCeEeehHHHHHHHHHHHHHHhccCCCCC-CcChhhHHHHHHHHH
Q psy12313 374 NLKRHRGYFVIQVYVPCVLIVVLSWVSFWIHREATSDRIGLGITTVLTLSTISLDSRTDLPKVR-YATALDWFLLMSFFY 452 (488)
Q Consensus 374 ~LkR~~~~y~~~iilP~~livllsl~sFwLp~~s~~~Ri~L~it~LLs~~~~~~~v~~~LP~~s-ylt~l~~~l~~~~i~ 452 (488)
++||++.||.+++++|++++++++|++||+|+++ ++|++++++++|++++++..+++.+|++| +.|+++.|+..|+++
T Consensus 2 ~lrR~~~~y~~~~iiP~~li~~Ls~~~F~lp~~s-~eRv~lgit~lLs~tv~l~~~~~~lP~tS~~vpli~~y~~~~~~~ 80 (137)
T 2lly_A 2 NAEELPLFYTINLIIPCLLISCLTVLVFYLPSEC-GEKITLCISVLLSLTVFLLLITEIIPSTSSVSPSIGEYLLFTMIF 80 (137)
T ss_dssp --CCCCHHHHHHHHHHHHHHHHHHHHHHHSCCST-THHHHHHHHHHHHHHHHHHHHHHHCSCCSSSCCSTHHHHHHHHHH
T ss_pred ceEeeehhhhHHHHHHHHHHHHHHHHheeeCCCC-CCeEEEEeeeHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHH
Confidence 4799999999999999999999999999999997 99999999999999999999999999998 899999999999999
Q ss_pred HHHHHHHHHHhhheeccCC
Q psy12313 453 CIATILEFAAVHYFTKLCY 471 (488)
Q Consensus 453 v~~sli~~viV~~l~~~~~ 471 (488)
+++++++++++.++.++++
T Consensus 81 v~~sl~~tv~V~~~~~r~~ 99 (137)
T 2lly_A 81 VTLSIVITVFVLNVHHRSP 99 (137)
T ss_dssp HHHHHHHHHHHHHCCSSCS
T ss_pred HHHHhhhhhhhhhHHhcCC
Confidence 9999999998877655544
No 24
>1oed_A Acetylcholine receptor protein, alpha chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 1dxz_A 3mra_A 2k59_B
Probab=99.54 E-value=1.9e-16 Score=152.05 Aligned_cols=107 Identities=21% Similarity=0.408 Sum_probs=83.7
Q ss_pred cceeEEEEehhhHHHHHhhheeeeccCCCCCCeEeehHHHHHHHHHHHHHHhccCCCCC-CcChhhHHHHHHHHHHHHHH
Q psy12313 379 RGYFVIQVYVPCVLIVVLSWVSFWIHREATSDRIGLGITTVLTLSTISLDSRTDLPKVR-YATALDWFLLMSFFYCIATI 457 (488)
Q Consensus 379 ~~~y~~~iilP~~livllsl~sFwLp~~s~~~Ri~L~it~LLs~~~~~~~v~~~LP~~s-ylt~l~~~l~~~~i~v~~sl 457 (488)
|.||.+++++||+++++++|++||+|+++ ++|++++++++|++++++..+++.+|++| ++|+++.|+..|++++++++
T Consensus 1 pl~Y~~nliiP~~li~~Ls~~~F~Lp~~s-gerv~l~it~lLs~tvfl~~v~~~lP~tS~~vPli~~y~~~~m~~v~~sl 79 (227)
T 1oed_A 1 PLYFVVNVIIPCLLFSFLTGLVFYLPTDS-GEKMTLSISVLLSLTVFLLVIVELIPSTSSAVPLIGKYMLFTMIFVISSI 79 (227)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCTHHHHHHHHHHHHHH
T ss_pred CeEEEehHHHHHHHHHHHHHHHheeCCCC-CCeEeehHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999997 99999999999999999999999999998 99999999999999999999
Q ss_pred HHHHHhhhee-cc-----CCCCChhhHHHhccccc
Q psy12313 458 LEFAAVHYFT-KL-----CYPGYPSGFIERLPVIG 486 (488)
Q Consensus 458 i~~viV~~l~-~~-----~~~~~~~~~l~~Lp~i~ 486 (488)
++++++.++. |. .+++.+..+++++|++.
T Consensus 80 ~~tv~vln~~~r~~~~~~mp~wvr~~~l~~l~~~l 114 (227)
T 1oed_A 80 IITVVVINTHHRSPSTHTMPQWVRKIFIDTIPNVM 114 (227)
T ss_dssp HHHHHHHHHHHHC----------------------
T ss_pred HHHHHHHhhhccCCCCCCcchHHHHHHHHhccHhh
Confidence 9999875543 33 33444555556677654
No 25
>1oed_E Acetylcholine receptor protein, gamma chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1
Probab=99.53 E-value=2.9e-16 Score=153.70 Aligned_cols=108 Identities=17% Similarity=0.319 Sum_probs=83.0
Q ss_pred cceeEEEEehhhHHHHHhhheeeeccCCCCCCeEeehHHHHHHHHHHHHHHhccCCCCC-CcChhhHHHHHHHHHHHHHH
Q psy12313 379 RGYFVIQVYVPCVLIVVLSWVSFWIHREATSDRIGLGITTVLTLSTISLDSRTDLPKVR-YATALDWFLLMSFFYCIATI 457 (488)
Q Consensus 379 ~~~y~~~iilP~~livllsl~sFwLp~~s~~~Ri~L~it~LLs~~~~~~~v~~~LP~~s-ylt~l~~~l~~~~i~v~~sl 457 (488)
+.||.+++++||+++++++|++||+|+++.++|++++++++|++++++..+++.+|++| ++|+++.|+..|++++++++
T Consensus 1 pl~Y~~nliiP~~li~~ls~~~F~Lp~~~~gerv~l~it~lLs~tvfl~~~~~~lP~tS~~vPli~~y~~~~m~~v~~sl 80 (260)
T 1oed_E 1 PLFYIINIIAPCVLISSLVVLVYFLPAQAGGQKCTLSISVLLAQTIFLFLIAQKVPETSLNVPLIGKYLIFVMFVSMLIV 80 (260)
T ss_dssp CCSHHHHHHTHHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCSHHHHHHHHHHHHH
T ss_pred CeEEEEhHHHHHHHHHHHHHHHeeeCCCCCCCeEEeehhHHHHHHHHHHHHHHhCCCCcccchhHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999996699999999999999999999999999998 99999999999999999999
Q ss_pred HHHHHhhhe-ec-----cCCCCChhhHHHhccccc
Q psy12313 458 LEFAAVHYF-TK-----LCYPGYPSGFIERLPVIG 486 (488)
Q Consensus 458 i~~viV~~l-~~-----~~~~~~~~~~l~~Lp~i~ 486 (488)
++++++.++ .| ..+++.+..|+++||++.
T Consensus 81 ~~tv~vln~~~r~~~~~~mp~w~r~~~l~~l~~~l 115 (260)
T 1oed_E 81 MNCVIVLNVSLRTPNTHSLSEKIKHLFLGFLPKYL 115 (260)
T ss_dssp HHHHHHHHHHHHC----------------------
T ss_pred HHHhheeeeeccCCCCCCcchHHHHHHHHhhhHHh
Confidence 988876443 22 344555666667777764
No 26
>1oed_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 2k58_B
Probab=99.52 E-value=2.6e-16 Score=153.20 Aligned_cols=107 Identities=18% Similarity=0.370 Sum_probs=83.2
Q ss_pred cceeEEEEehhhHHHHHhhheeeeccCCCCCCeEeehHHHHHHHHHHHHHHhccCCCCC-CcChhhHHHHHHHHHHHHHH
Q psy12313 379 RGYFVIQVYVPCVLIVVLSWVSFWIHREATSDRIGLGITTVLTLSTISLDSRTDLPKVR-YATALDWFLLMSFFYCIATI 457 (488)
Q Consensus 379 ~~~y~~~iilP~~livllsl~sFwLp~~s~~~Ri~L~it~LLs~~~~~~~v~~~LP~~s-ylt~l~~~l~~~~i~v~~sl 457 (488)
+.||.+++++||+++++++|++||+|+++ ++|++++++++|++++++..+++.+|++| ++|+++.|+..|++++++++
T Consensus 1 pl~Y~~nliiP~~li~~ls~~~F~Lp~ds-gerv~l~it~lLs~tvfl~~v~~~lP~tS~~vPli~~y~~~~m~~v~~sl 79 (250)
T 1oed_B 1 PLFYIVYTIIPCILISILAILVFYLPPDA-GEKMSLSISALLAVTVFLLLLADKVPETSLSVPIIIRYLMFIMILVAFSV 79 (250)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCTTHHHHHHHHHHHH
T ss_pred CeEEEEhHHHHHHHHHHHHHHHheeCCCC-CCeEEehhhHHHHHHHHHHHHHHHCCCCcccCCcHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999997 99999999999999999999999999998 99999999999999999999
Q ss_pred HHHHHhhhee-c-----cCCCCChhhHHHhccccc
Q psy12313 458 LEFAAVHYFT-K-----LCYPGYPSGFIERLPVIG 486 (488)
Q Consensus 458 i~~viV~~l~-~-----~~~~~~~~~~l~~Lp~i~ 486 (488)
+++++|.++. | ..+++.+..|+++||++.
T Consensus 80 ~~tv~Vln~~~r~~~~~~mp~wvr~~~l~~l~~~l 114 (250)
T 1oed_B 80 ILSVVVLNLHHRSPNTHTMPNWIRQIFIETLPPFL 114 (250)
T ss_dssp HHHHHHHHHHHTC----------------------
T ss_pred HHHhheeeeeccCCCCCCcchHHHHHHHHhhhHHh
Confidence 9998875543 2 334455556667777764
No 27
>1oed_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 1a11_A 1cek_A 1eq8_A
Probab=99.51 E-value=5.3e-16 Score=151.86 Aligned_cols=107 Identities=22% Similarity=0.398 Sum_probs=83.2
Q ss_pred cceeEEEEehhhHHHHHhhheeeeccCCCCCCeEeehHHHHHHHHHHHHHHhccCCCCC-CcChhhHHHHHHHHHHHHHH
Q psy12313 379 RGYFVIQVYVPCVLIVVLSWVSFWIHREATSDRIGLGITTVLTLSTISLDSRTDLPKVR-YATALDWFLLMSFFYCIATI 457 (488)
Q Consensus 379 ~~~y~~~iilP~~livllsl~sFwLp~~s~~~Ri~L~it~LLs~~~~~~~v~~~LP~~s-ylt~l~~~l~~~~i~v~~sl 457 (488)
+.||.+++++||++++++++++||+|+++ ++|++++++++|++++++..+++.+|++| ++|+++.|+..|++++++++
T Consensus 1 pl~Y~~nliiP~~li~~ls~~~F~Lp~~~-gekv~l~it~lLs~tvfl~~~~~~lP~tS~~vPli~~y~~~~m~~v~~s~ 79 (260)
T 1oed_C 1 PLFYVINFITPCVLISFLASLAFYLPAES-GEKMSTAISVLLAQAVFLLLTSQRLPETALAVPLIGKYLMFIMSLVTGVI 79 (260)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCTHHHHHHHHHHHHHH
T ss_pred CeEEEEhHHHHHHHHHHHHHHHeeeCCCC-CCeEeehHHHHHHHHHHHHHHHHHCCCCcccchhHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999995 99999999999999999999999999998 89999999999999999999
Q ss_pred HHHHHhhheec------cCCCCChhhHHHhccccc
Q psy12313 458 LEFAAVHYFTK------LCYPGYPSGFIERLPVIG 486 (488)
Q Consensus 458 i~~viV~~l~~------~~~~~~~~~~l~~Lp~i~ 486 (488)
+++++|.++.+ ..+++.+..|+++||++.
T Consensus 80 ~~tv~vl~~~~r~~~~~~mp~w~r~~~l~~l~~~l 114 (260)
T 1oed_C 80 VNCGIVLNFHFRTPSTHVLSTRVKQIFLEKLPRIL 114 (260)
T ss_dssp HHHHHHHHHHHHC----------------------
T ss_pred HHHHheeeeeccCCCCCCccHHHHHHHHHhhhHHh
Confidence 99988865433 334555666667777764
No 28
>1vry_A Glycine receptor alpha-1 chain; second transmembrane domain, third transmembrane domain, membrane protein; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=99.09 E-value=1.3e-11 Score=97.25 Aligned_cols=67 Identities=42% Similarity=0.664 Sum_probs=58.1
Q ss_pred CCeEeehHHHHHHHHHHHHHHhccCCCCCCcChhhHHHHHHHHHHHHHHHHHHHhhheeccCCCCCh
Q psy12313 409 SDRIGLGITTVLTLSTISLDSRTDLPKVRYATALDWFLLMSFFYCIATILEFAAVHYFTKLCYPGYP 475 (488)
Q Consensus 409 ~~Ri~L~it~LLs~~~~~~~v~~~LP~~sylt~l~~~l~~~~i~v~~sli~~viV~~l~~~~~~~~~ 475 (488)
++|++||++++|+++.+...+...+|+.||.+++|+|+.+|++++|++++|+++|+++.+++++..+
T Consensus 2 paRv~LGittvLtmtt~~~~~~~~lPkVSYikAiDvw~~~C~~FVF~aLlEya~V~y~~r~~~~~~~ 68 (76)
T 1vry_A 2 PARVGLGITTVLTLTTQSSGSRASLPKVSYVKAIDIWLAVCLLFVFSALLEYAAVNFVSRKKKKHRL 68 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTTCCCSHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHCC-------
T ss_pred CceEEechHHHHHHHHHhcCcccCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccch
Confidence 5799999999999999999999999999999999999999999999999999999999877665443
No 29
>1mot_A Glycine receptor alpha-1 chain; second transmembrane domain, micelles, membrane protein; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=72.24 E-value=0.17 Score=31.62 Aligned_cols=27 Identities=63% Similarity=0.887 Sum_probs=23.2
Q ss_pred CCeEeehHHHHHHHHHHHHHHhccCCC
Q psy12313 409 SDRIGLGITTVLTLSTISLDSRTDLPK 435 (488)
Q Consensus 409 ~~Ri~L~it~LLs~~~~~~~v~~~LP~ 435 (488)
++|+.++++.+|++..+.......+|+
T Consensus 2 paRv~LGittvLt~tt~~~~~~~~lPk 28 (28)
T 1mot_A 2 PARVGLGITTVLTMTTQSSGSRASLPK 28 (28)
T ss_dssp CHHHHHHHHHHHHHCCSSSSSSSSCCC
T ss_pred CceEEEcchhHHHHHHHHhhHhhhCCC
Confidence 579999999999999888777777775
Done!