RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12313
(488 letters)
>3rhw_A Avermectin-sensitive glutamate-gated chloride CHA alpha; membrane
protein, transport protein, Cys-loop receptor, LIGA ION
channel, neurotransmitter receptor; HET: NAG IVM LMT
UND; 3.26A {Caenorhabditis elegans} PDB: 3ri5_A* 3ria_A*
3rif_A*
Length = 347
Score = 350 bits (899), Expect = e-118
Identities = 99/300 (33%), Positives = 161/300 (53%), Gaps = 5/300 (1%)
Query: 174 TLVLNNLLK-NYQSSEPPNHGKGEPTIIKTNMLIRSMGPISEIDMDYSMDCYFRQYWRDS 232
+ +L +L Y P G P ++ NML+R++ I ++M+YS R+ W D
Sbjct: 3 SKILAHLFTSGYDFRVRPPTDNGGPVVVSVNMLLRTISKIDVVNMEYSAQLTLRESWIDK 62
Query: 233 RLSF--MGPINNLSLSIKMLEKIWRPDTYILNGKQSYVHTITVPNKLLRINQDGDILYSM 290
RLS+ G + + + +IW PDT+ N KQ+Y HTI PN L+RI+ DG +LYS+
Sbjct: 63 RLSYGVKGDGQPDFVILTVGHQIWMPDTFFPNEKQAYKHTIDKPNVLIRIHNDGTVLYSV 122
Query: 291 RLTIKANCPMSLRNFPMDTQSCPLILGSYAYPIEKLVYHWTPGK--SISFVPGMAISQFD 348
R+++ +CPM L+ +PMD Q C + L SYAY + + Y W + ++ F
Sbjct: 123 RISLVLSCPMYLQYYPMDVQQCSIDLASYAYTTKDIEYLWKEHSPLQLKVGLSSSLPSFQ 182
Query: 349 FISSPKRNFTFKRREGEFSLLQVNFNLKRHRGYFVIQVYVPCVLIVVLSWVSFWIHREAT 408
++ T G +S L+ LKR ++++Q+Y+P ++V++SWVSFW R A
Sbjct: 183 LTNTSTTYCTSVTNTGIYSCLRTTIQLKREFSFYLLQLYIPSCMLVIVSWVSFWFDRTAI 242
Query: 409 SDRIGLGITTVLTLSTISLDSRTDLPKVRYATALDWFLLMSFFYCIATILEFAAVHYFTK 468
R+ LG+TT+LT++ S + LP V Y A+D ++ + +LEFA V++
Sbjct: 243 PARVTLGVTTLLTMTAQSAGINSQLPPVSYIKAIDVWIGACMTFIFCALLEFALVNHIAN 302
>3rqw_A ELIC pentameric ligand gated ION channel from ERW chrysanthemi;
membrane, transport protein; HET: ACH MES; 2.91A
{Dickeya dadantii} PDB: 3rqu_A* 3uq4_A 3uq5_A 3uq7_A
2vl0_A 2yks_A
Length = 322
Score = 344 bits (884), Expect = e-116
Identities = 59/293 (20%), Positives = 112/293 (38%), Gaps = 20/293 (6%)
Query: 189 PPNHGKGEPTIIKTNMLIRSMGPISEIDMDYSMDCYFRQYWRDSRLSFMGP----INNLS 244
N P + ++ I + ++ ++ Y +D Y W G + N
Sbjct: 3 ADNAADARPVDVSVSIFINKIYGVNTLEQTYKVDGYIVAQWTGKPRKTPGDKPLIVENTQ 62
Query: 245 LSIKMLEKIWRPDTYILNGKQSYVHTITVPNKLLRINQDGDILYSMRLTIKANCPMSLRN 304
+ + +W P +N + NK L + DG ++Y+ R + M R
Sbjct: 63 IERWINNGLWVPALEFINVV----GSPDTGNKRLMLFPDGRVIYNARFLGSFSNDMDFRL 118
Query: 305 FPMDTQSCPLILGSYAYPIEKLVYHWTPGKSISFVPGMAISQFDFISSPKRNFTFKRRE- 363
FP D Q L L ++Y ++L + + I ++ + + R +
Sbjct: 119 FPFDRQQFVLELEPFSYNNQQLRFSDIQV-YTENIDNEEIDEWWIRGKASTHISDIRYDH 177
Query: 364 --------GEFSLLQVNFNLKRHRGYFVIQVYVPCVLIVVLSWVSFWIHREATSDRIGLG 415
EFS + V + R+ Y++ +P LI+ SW FW+ E+ S+R+
Sbjct: 178 LSSVQPNQNEFSRITVRIDAVRNPSYYLWSFILPLGLIIAASWSVFWL--ESFSERLQTS 235
Query: 416 ITTVLTLSTISLDSRTDLPKVRYATALDWFLLMSFFYCIATILEFAAVHYFTK 468
T +LT+ + + LP++ Y T +D ++ + A IL H+
Sbjct: 236 FTLMLTVVAYAFYTSNILPRLPYTTVIDQMIIAGYGSIFAAILLIIFAHHRQA 288
>3tlw_A GLR4197 protein, GLIC; Cys-loop receptor family, membrane protein,
transport protei; HET: LMT; 2.60A {Gloeobacter
violaceus} PDB: 3uu4_A* 3uub_A* 3tlv_A* 3uu6_A* 3uu5_A*
3uu3_A* 3tlu_A* 3uu8_A* 3tls_A* 3tlt_A* 3p4w_A* 3p50_A*
3eam_A* 3ehz_A 2xq4_A 2xq5_A 2xq6_A 2xq3_A 2xq8_A 2xqa_A
...
Length = 321
Score = 336 bits (865), Expect = e-113
Identities = 50/288 (17%), Positives = 111/288 (38%), Gaps = 9/288 (3%)
Query: 183 NYQSSEPPNHGKGEPTIIKTNMLIRSMGPISEIDMDYSMDCYFRQYWRDSRLSFMGPINN 242
PP EP + T + + + + + ++ + W+D RL+F +
Sbjct: 5 AQDMVSPPPPIADEPLTVNTGIYLIESYSLDDCAETFKVNAFLSLSWKDRRLAFDPVRSG 64
Query: 243 LSLSIKMLEKIWRPDTYILNGKQSYVHTITVPNKLLRINQDGDILYSMRLTIKANCPMSL 302
+ + E IW P+ +N + + + + ++ DG + Y R + + P+
Sbjct: 65 VRVKTYEPEAIWIPEIRFVNVENARDADVV----DISVSPDGTVQYLERFSARVLSPLDF 120
Query: 303 RNFPMDTQSCPLILGSYAYPIEKLVYHWTPGKSISFVPGMAISQFDFISSP--KRNFTFK 360
R +P D+Q+ + L + +V + + ++ +D S + F
Sbjct: 121 RRYPFDSQTLHIYLIVRSVDTRNIVLAVDLE-KVGKNDDVFLTGWDIESFTAVVKPANFA 179
Query: 361 RREGEFSLLQVNFNLKRHRGYFVIQVYVPCVLIVVLSWVSFWIHREATSDRIGLGITTVL 420
+ S L + R ++ + +P + I+ +SW +FW + + L ++T++
Sbjct: 180 LEDRLESKLDYQLRISRQYFSYIPNIILPMLFILFISWTAFWS--TSYEANVTLVVSTLI 237
Query: 421 TLSTISLDSRTDLPKVRYATALDWFLLMSFFYCIATILEFAAVHYFTK 468
++ T LPK Y T + M + + ++E HY
Sbjct: 238 AHIAFNILVETCLPKTPYMTYTGAIIFMIYLFYFVAVIEVTVQHYLKV 285
>3igq_A GLR4197 protein; plgic Cys-loop, membrane protein, transport
protein; 2.30A {Gloeobacter violaceus}
Length = 201
Score = 219 bits (560), Expect = 1e-69
Identities = 32/199 (16%), Positives = 73/199 (36%), Gaps = 8/199 (4%)
Query: 189 PPNHGKGEPTIIKTNMLIRSMGPISEIDMDYSMDCYFRQYWRDSRLSFMGPINNLSLSIK 248
PP EP + T + + + + + ++ + W+D RL+F + + +
Sbjct: 8 PPPIA-DEPLTVNTGIYLIECYSLDDKAETFKVNAFLSLSWKDRRLAFDPVRSGVRVKTY 66
Query: 249 MLEKIWRPDTYILNGKQSYVHTITVPNKLLRINQDGDILYSMRLTIKANCPMSLRNFPMD 308
E IW P+ +N + + + + ++ DG + Y R + + P+ R D
Sbjct: 67 EPEAIWIPEIRFVNVENARDADVV----DISVSPDGTVQYLERFSARVLSPLDGRRTESD 122
Query: 309 TQSCPLILGSYAYPIEKLVYHWTPGKSISFVPGMAISQFDFISSP--KRNFTFKRREGEF 366
+Q+ + L + +V + + + ++ +D S + F +
Sbjct: 123 SQTLHIYLIVRSVDTRNIVLAVDL-EKVGKNDDVFLTGWDIESFTAVVKPANFALEDRLE 181
Query: 367 SLLQVNFNLKRHRGYFVIQ 385
S L + R G+
Sbjct: 182 SKLDYQLRISRQGGHHHHH 200
>2bg9_E Acetylcholine receptor protein, gamma chain; ION channel/receptor,
ION channel, electron microscopy, ION transport,
postsynaptic membrane; 4.00A {Torpedo marmorata}
Length = 370
Score = 124 bits (313), Expect = 7e-32
Identities = 50/294 (17%), Positives = 115/294 (39%), Gaps = 16/294 (5%)
Query: 177 LNNLLKNYQSSEPPNHGKGEPTIIKTNMLIRSMGPISEIDMDYSMDCYFRQYWRDSRLSF 236
+ LL +Y P + + + ++ ++E + + + + W D RLS+
Sbjct: 7 IEKLLGDYDKRIKPAKTLDHVIDVTLKLTLTNLISLNEKEEALTTNVWIEIQWNDYRLSW 66
Query: 237 M----GPINNLSLSIKMLEKIWRPDTYILNGKQSYVHTITVPNKLLRINQDGDILYSMRL 292
I+ + + E +W PD + N N + + DG + +
Sbjct: 67 NTSEYEGIDLVRIPS---ELLWLPDVVLENNVDGQFEVAYYAN--VLVYNDGSMYWLPPA 121
Query: 293 TIKANCPMSLRNFPMDTQSCPLILGSYAYPIEKLVYHWTPGKSISFVPGMAISQFDFISS 352
++ CP+++ FP D Q+C L+ S Y ++ + + I ++
Sbjct: 122 IYRSTCPIAVTYFPFDWQNCSLVFRSQTYNAHEVNLQLSAEEGIDPEDFTENGEWTIRHR 181
Query: 353 P-KRNFTFKR--REGEFSLLQVNFNLKRHRGYFVIQVYVPCVLIVVLSWVSFWIHREATS 409
P K+N+ ++ + +F + ++R +++I + PCVLI L + +++ +A
Sbjct: 182 PAKKNYNWQLTKDDIDFQEIIFFLIIQRKPLFYIINIIAPCVLISSLVVLVYFLPAQAGG 241
Query: 410 DRIGLGITTVLTLSTISLDSRTDLPKVRYATALDWFLLMSFFYCIATILEFAAV 463
+ L I+ +L + +P T+L+ L+ + + +
Sbjct: 242 QKCTLSISVLLAQTIFLFLIAQKVP----ETSLNVPLIGKYLIFVMFVSLVIVT 291
>2bg9_A Acetylcholine receptor protein, alpha chain; ION channel/receptor,
ION channel, electron microscopy, ION transport,
postsynaptic membrane; 4.00A {Torpedo marmorata}
Length = 370
Score = 121 bits (304), Expect = 2e-30
Identities = 55/296 (18%), Positives = 123/296 (41%), Gaps = 22/296 (7%)
Query: 177 LNNLLKNYQSSEPPNHGKGEPTIIKTNMLIRSMGPISEIDMDYSMDCYFRQYWRDSRL-- 234
+ NLL+NY P I + + + + E++ + RQ W D RL
Sbjct: 8 VANLLENYNKVIRPVEHHTHFVDITVGLQLIQLINVDEVNQIVETNVRLRQQWIDVRLRW 67
Query: 235 --SFMGPINNLSLSIKMLEKIWRPDTYILNGKQSYVHTITVPNKLLRINQDGDILYSMRL 292
+ G I + L + +W PD + N + + L ++ G I+++
Sbjct: 68 NPADYGGIKKIRLPS---DDVWLPDLVLYNNADGDFAIVHMTK--LLLDYTGKIMWTPPA 122
Query: 293 TIKANCPMSLRNFPMDTQSCPLILGSYAYPIEKLVYHWTPGKSI--SFVPGMAISQFDFI 350
K+ C + + +FP D Q+C + LG + Y K+ + +F+ ++
Sbjct: 123 IFKSYCEIIVTHFPFDQQNCTMKLGIWTYDGTKVSISPESDRPDLSTFMES---GEWVMK 179
Query: 351 SSP-KRNFTFKR--REGEFSLLQVNFNLKRHRGYFVIQVYVPCVLIVVLSWVSFWIHREA 407
+++ + + + + +F ++R YFV+ V +PC+L L+ + F++ ++
Sbjct: 180 DYRGWKHWVYYTCCPDTPYLDITYHFIMQRIPLYFVVNVIIPCLLFSFLTVLVFYLPTDS 239
Query: 408 TSDRIGLGITTVLTLSTISLDSRTDLPKVRYATALDWFLLMSFFYCIATILEFAAV 463
+++ L I+ +L+L+ L +P +T+ L+ + + + +
Sbjct: 240 G-EKMTLSISVLLSLTVFLLVIVELIP----STSSAVPLIGKYMLFTMIFVISSII 290
>2bg9_B Acetylcholine receptor protein, beta chain; ION channel/receptor,
ION channel, electron microscopy, ION transport,
postsynaptic membrane; 4.00A {Torpedo marmorata}
Length = 370
Score = 116 bits (291), Expect = 8e-29
Identities = 51/305 (16%), Positives = 125/305 (40%), Gaps = 14/305 (4%)
Query: 177 LNNLLKNYQSSEPPNHGKGEPTIIKTNMLIRSMGPISEIDMDYSMDCYFRQYWRDSRLS- 235
L+ L +NY P+ G+ ++ + + S+ ++E + + + + W D RL
Sbjct: 8 LSVLFENYNPKVRPSQTVGDKVTVRVGLTLTSLLILNEKNEEMTTSVFLNLAWTDYRLQW 67
Query: 236 ----FMGPINNLSLSIKMLEKIWRPDTYILNGKQSYVHTITVPNKLLRINQDGDILYSMR 291
+ G I +LS+ + +W+PD ++N N + + G + +
Sbjct: 68 DPAAYEG-IKDLSIPS---DDVWQPDIVLMNNNDGSFEITLHVN--VLVQHTGAVSWHPS 121
Query: 292 LTIKANCPMSLRNFPMDTQSCPLILGSYAYPIEKLVYHWTPGKSISFVPGMAISQFDFIS 351
+++C + + FP D Q+C ++ SY Y +++ I+ Q+
Sbjct: 122 AIYRSSCTIKVMYFPFDWQNCTMVFKSYTYDTSEVILQHALDAMINQDAFTENGQWSIEH 181
Query: 352 SPKRNFTFKRREGEFSLLQVNFNLKRHRGYFVIQVYVPCVLIVVLSWVSFWIHREATSDR 411
P R ++ + + + ++R ++++ VPC+LI +L+ + F++ + ++
Sbjct: 182 KPSRK-NWRSDDPSYEDVTFYLIIQRKPLFYIVYTIVPCILISILAILVFYLPPD-AGEK 239
Query: 412 IGLGITTVLTLSTISLDSRTDLPKVRYATAL-DWFLLMSFFYCIATILEFAAVHYFTKLC 470
+ L I+ +L L+ L +P+ + + +L+ +++ V
Sbjct: 240 MSLSISALLALTVFLLLLADKVPETSLSVPIIISYLMFIMILVAFSVILSVVVLNLHHRS 299
Query: 471 YPGYP 475
+
Sbjct: 300 PNTHE 304
>4aq5_E Acetylcholine receptor gamma subunit; membrane protein,
freeze-trapping, asymmetric gating, allost mechanism;
6.20A {Torpedo marmorata} PDB: 4aq9_E
Length = 488
Score = 114 bits (287), Expect = 1e-27
Identities = 51/298 (17%), Positives = 117/298 (39%), Gaps = 22/298 (7%)
Query: 177 LNNLLKNYQSSEPPNHGKGEPTIIKTNMLIRSMGPISEIDMDYSMDCYFRQYWRDSRLSF 236
+ LL +Y P + + + ++ ++E + + + + W D RLS+
Sbjct: 7 IEKLLGDYDKRIKPAKTLDHVIDVTLKLTLTNLISLNEKEEALTTNVWIEIQWNDYRLSW 66
Query: 237 M----GPINNLSLSIKMLEKIWRPDTYILNGKQSYVHTITVPNKLLRINQDGDILYSMRL 292
I+ + + E +W PD + N N + + DG + +
Sbjct: 67 NTSEYEGIDLVRIPS---ELLWLPDVVLENNVDGQFEVAYYAN--VLVYNDGSMYWLPPA 121
Query: 293 TIKANCPMSLRNFPMDTQSCPLILGSYAYPIEKLVYHWTPGKSISFVPGMAISQFDFISS 352
++ CP+++ FP D Q+C L+ S Y ++ + + V + I DF +
Sbjct: 122 IYRSTCPIAVTYFPFDWQNCSLVFRSQTYNAHEVNLQLS-AEEGEVVEWIHIDPEDFTEN 180
Query: 353 P---------KRNFTFKRREGEFSLLQVNFN--LKRHRGYFVIQVYVPCVLIVVLSWVSF 401
K+N+ ++ + + ++ F ++R +++I + PCVLI L + +
Sbjct: 181 GEWTIRHRPAKKNYNWQLTKDDIDFQEIIFFLIIQRKPLFYIINIIAPCVLISSLVVLVY 240
Query: 402 WIHREATSDRIGLGITTVLTLSTISLDSRTDLPKVRYAT-ALDWFLLMSFFYCIATIL 458
++ +A + L I+ +L + +P+ + +L+ F + +
Sbjct: 241 FLPAQAGGQKCTLSISVLLAQTIFLFLIAQKVPETSLNVPLIGKYLIFVMFVSLVIVT 298
>2bg9_C Acetylcholine receptor protein, delta chain; ION channel/receptor,
ION channel, electron microscopy, ION transport,
postsynaptic membrane; 4.00A {Torpedo marmorata}
Length = 369
Score = 112 bits (282), Expect = 1e-27
Identities = 61/296 (20%), Positives = 119/296 (40%), Gaps = 23/296 (7%)
Query: 177 LNNLL--KNYQSSEPPNHGKGEPTIIKTNMLIRSMGPISEIDMDYSMDCYFRQYWRDSRL 234
+N+LL Y P E I ++ + ++ + E D + + + W D RL
Sbjct: 8 INDLLIVNKYNKHVRPVKHNNEVVNIALSLTLSNLISLKETDETLTTNVWMDHAWYDHRL 67
Query: 235 ----SFMGPINNLSLSIKMLEKIWRPDTYILNGKQSYVHTITVPNKLLRINQDGDILYSM 290
S I+ L L E IW PD + N + N + + +G + +
Sbjct: 68 TWNASEYSDISILRLRP---ELIWIPDIVLQNNNDGQYNVAYFCN--VLVRPNGYVTWLP 122
Query: 291 RLTIKANCPMSLRNFPMDTQSCPLILGSYAYPIEKLVYHWTPGKSISFVPGMAISQFDFI 350
+++CP+++ FP D Q+C L + Y ++ +F +++ I
Sbjct: 123 PAIFRSSCPINVLYFPFDWQNCSLKFTALNYNANEISMDLIIDPE-AFTEN---GEWEII 178
Query: 351 SSP-KRNFTFKRREGE--FSLLQVNFNLKRHRGYFVIQVYVPCVLIVVLSWVSFWIHREA 407
P K+N + + + ++R ++VI PCVLI L+ ++F++ E
Sbjct: 179 HKPAKKNIYGDKFPNGTNYQDVTFYLIIRRKPLFYVINFITPCVLISFLAALAFYLPAE- 237
Query: 408 TSDRIGLGITTVLTLSTISLDSRTDLPKVRYATALDWFLLMSFFYCIATILEFAAV 463
+ +++ I +L + L + LP TAL L+ + I +++ V
Sbjct: 238 SGEKMSTAICVLLAQAVFLLLTSQRLP----ETALAVPLIGKYLMFIMSLVTGVVV 289
>4aq5_A Acetylcholine receptor subunit alpha; membrane protein,
freeze-trapping, asymmetric gating, allost mechanism;
6.20A {Torpedo marmorata} PDB: 4aq9_A
Length = 461
Score = 113 bits (284), Expect = 2e-27
Identities = 51/256 (19%), Positives = 111/256 (43%), Gaps = 18/256 (7%)
Query: 177 LNNLLKNYQSSEPPNHGKGEPTIIKTNMLIRSMGPISEIDMDYSMDCYFRQYWRDSRL-- 234
+ NLL+NY P I + + + + E++ + RQ W D RL
Sbjct: 32 VANLLENYNKVIRPVEHHTHFVDITVGLQLIQLINVDEVNQIVETNVRLRQQWIDVRLRW 91
Query: 235 --SFMGPINNLSLSIKMLEKIWRPDTYILNGKQSYVHTITVPNKLLRINQDGDILYSMRL 292
+ G I + L + +W PD + N + + L ++ G I+++
Sbjct: 92 NPADYGGIKKIRLP---SDDVWLPDLVLYNNADGDFAIVHMTK--LLLDYTGKIMWTPPA 146
Query: 293 TIKANCPMSLRNFPMDTQSCPLILGSYAYPIEKLVYHWTPGKSI--SFVPGMAISQFDFI 350
K+ C + + +FP D Q+C + LG + Y K+ + +F+ ++
Sbjct: 147 IFKSYCEIIVTHFPFDQQNCTMKLGIWTYDGTKVSISPESDRPDLSTFMES---GEWVMK 203
Query: 351 SSP-KRNFTFKRREGE--FSLLQVNFNLKRHRGYFVIQVYVPCVLIVVLSWVSFWIHREA 407
+++ + + + + +F ++R YFV+ V +PC+L L+ + F++ ++
Sbjct: 204 DYRGWKHWVYYTCCPDTPYLDITYHFIMQRIPLYFVVNVIIPCLLFSFLTVLVFYLPTDS 263
Query: 408 TSDRIGLGITTVLTLS 423
+++ L I+ +L+L+
Sbjct: 264 G-EKMTLSISVLLSLT 278
>4aq5_B Acetylcholine receptor beta subunit; membrane protein,
freeze-trapping, asymmetric gating, allost mechanism;
6.20A {Torpedo marmorata} PDB: 4aq9_B
Length = 493
Score = 107 bits (267), Expect = 4e-25
Identities = 56/299 (18%), Positives = 133/299 (44%), Gaps = 22/299 (7%)
Query: 177 LNNLLKNYQSSEPPNHGKGEPTIIKTNMLIRSMGPISEIDMDYSMDCYFRQYWRDSRL-- 234
L+ L +NY P+ G+ ++ + + S+ ++E + + + + W D RL
Sbjct: 32 LSVLFENYNPKVRPSQTVGDKVTVRVGLTLTSLLILNEKNEEMTTSVFLNLAWTDYRLQW 91
Query: 235 --SFMGPINNLSLSIKMLEKIWRPDTYILNGKQSYVHTITVPNKLLRINQDGDILYSMRL 292
+ I +LS+ + +W+PD ++N N + + G + +
Sbjct: 92 DPAAYEGIKDLSIPS---DDVWQPDIVLMNNNDGSFEITLHVN--VLVQHTGAVSWHPSA 146
Query: 293 TIKANCPMSLRNFPMDTQSCPLILGSYAYPIEKL-VYHWTPGKSISFVPGMAISQFDFIS 351
+++C + + FP D Q+C ++ SY Y ++ + H K V + I+Q F
Sbjct: 147 IYRSSCTIKVMYFPFDWQNCTMVFKSYTYDTSEVILQHALDAKGEREVKEIMINQDAFTE 206
Query: 352 SPK---RNFTFKRR----EGEFSLLQVNFNLKRHRGYFVIQVYVPCVLIVVLSWVSFWIH 404
+ + + ++ + + + ++R ++++ VPC+LI +L+ + F++
Sbjct: 207 NGQWSIEHKPSRKNWRSDDPSYEDVTFYLIIQRKPLFYIVYTIVPCILISILAILVFYLP 266
Query: 405 REATSDRIGLGITTVLTLSTISLDSRTDLPKVRYATALDWFLLMSFFYCIATILEFAAV 463
+A +++ L I+ +L L+ L +P T+L +++S+ I ++ F+ +
Sbjct: 267 PDA-GEKMSLSISALLALTVFLLLLADKVP----ETSLSVPIIISYLMFIMILVAFSVI 320
>4aq5_C Acetylcholine receptor delta subunit; membrane protein,
freeze-trapping, asymmetric gating, allost mechanism;
6.20A {Torpedo marmorata} PDB: 4aq9_C
Length = 522
Score = 95.6 bits (237), Expect = 3e-21
Identities = 63/307 (20%), Positives = 119/307 (38%), Gaps = 30/307 (9%)
Query: 177 LNNLL--KNYQSSEPPNHGKGEPTIIKTNMLIRSMGPISEIDMDYSMDCYFRQYWRDSRL 234
+N+LL Y P E I ++ + ++ + E D + + + W D RL
Sbjct: 29 INDLLIVNKYNKHVRPVKHNNEVVNIALSLTLSNLISLKETDETLTTNVWMDHAWYDHRL 88
Query: 235 ----SFMGPINNLSLSIKMLEKIWRPDTYILNGKQSYVHTITVPNKLLRINQDGDILYSM 290
S I+ L L E IW PD + N + N + + +G + +
Sbjct: 89 TWNASEYSDISILRLR---PELIWIPDIVLQNNNDGQYNVAYFCN--VLVRPNGYVTWLP 143
Query: 291 RLTIKANCPMSLRNFPMDTQSCPLILGSYAYPIEKLVYHW---TPGKSISFVPGMAISQF 347
+++CP+++ FP D Q+C L + Y ++ T + + I
Sbjct: 144 PAIFRSSCPINVLYFPFDWQNCSLKFTALNYNANEISMDLMTDTIDGKDYPIEWIIIDPE 203
Query: 348 DFISS---------PKRNFTFKRREGEFSLLQVNFN--LKRHRGYFVIQVYVPCVLIVVL 396
F + K+N + + V F ++R ++VI PCVLI L
Sbjct: 204 AFTENGEWEIIHKPAKKNIYGDKFPNGTNYQDVTFYLIIRRKPLFYVINFITPCVLISFL 263
Query: 397 SWVSFWIHREATSDRIGLGITTVLTLSTISLDSRTDLPKVRYATALDWFLLMSFFYCIAT 456
+ ++F++ E + +++ I +L + L + LP TAL L+ + I +
Sbjct: 264 AALAFYLPAE-SGEKMSTAICVLLAQAVFLLLTSQRLP----ETALAVPLIGKYLMFIMS 318
Query: 457 ILEFAAV 463
++ V
Sbjct: 319 LVTGVVV 325
>2qc1_B Acetylcholine receptor subunit alpha; nicotinic acetylcholine
receptor, glycosylated protein, beta sandwich, Cys-loop,
buried hydrophilic residues; HET: NAG MAN; 1.94A {Mus
musculus} PDB: 1l4w_B 1ljz_B
Length = 212
Score = 87.5 bits (217), Expect = 5e-20
Identities = 31/157 (19%), Positives = 62/157 (39%), Gaps = 9/157 (5%)
Query: 177 LNNLLKNYQSSEPPNHGKGEPTIIKTNMLIRSMGPISEIDMDYSMDCYFRQYWRDSRL-- 234
L ++Y S P E + + + + + E++ + + +Q W D L
Sbjct: 9 EAKLFEDYSSVVRPVEDHREIVQVTVGLQLIQLINVDEVNQIVTTNVRLKQQWVDYNLKW 68
Query: 235 --SFMGPINNLSLSIKMLEKIWRPDTYILNGKQSYVHTITVPNKLLRINQDGDILYSMRL 292
G + + + EKIWRPD + N + + ++ G I ++
Sbjct: 69 NPDDYGGVKKIHIPS---EKIWRPDVVLYNNADGDFAIVKFTK--VLLDYTGHITWTPPA 123
Query: 293 TIKANCPMSLRNFPMDTQSCPLILGSYAYPIEKLVYH 329
K+ C + + +FP D Q+C + LG+ Y + +
Sbjct: 124 IFKSYCEIIVTHFPFDEQNCSMKLGTRTYDGSAVAIN 160
>1vry_A Glycine receptor alpha-1 chain; second transmembrane domain, third
transmembrane domain, membrane protein; NMR {Homo
sapiens} SCOP: j.35.1.1
Length = 76
Score = 76.1 bits (187), Expect = 1e-17
Identities = 28/58 (48%), Positives = 41/58 (70%)
Query: 411 RIGLGITTVLTLSTISLDSRTDLPKVRYATALDWFLLMSFFYCIATILEFAAVHYFTK 468
R+GLGITTVLTL+T S SR LPKV Y A+D +L + + + +LE+AAV++ ++
Sbjct: 4 RVGLGITTVLTLTTQSSGSRASLPKVSYVKAIDIWLAVCLLFVFSALLEYAAVNFVSR 61
>3sq6_A ACHBP, neuronal acetylcholine receptor subunit alpha-7,
acetylcholine-binding protein; nicotinic receptor; HET:
EPJ NAG; 2.80A {Homo sapiens} PDB: 3sq9_A*
Length = 204
Score = 77.2 bits (190), Expect = 1e-16
Identities = 31/203 (15%), Positives = 70/203 (34%), Gaps = 15/203 (7%)
Query: 177 LNNLLKNYQSSEPPNHGKGEPTIIKTNMLIRSMGPISEIDMDYSMDCYFRQYWRDSRLSF 236
L+KNY P + P + ++ + + + E + + + + W D L +
Sbjct: 7 YKELVKNYNPDVIPTQ-RDRPVTVYFSLSLLQIMDVDEKNQVVDVVFWLQMSWTDHYLQW 65
Query: 237 M----GPINNLSLSIKMLEKIWRPDTYILNGKQSYVHTITVPNKLLRINQDGDILYSMRL 292
+ +S+ + +W PD N +L +N G + Y +
Sbjct: 66 NVSEYPGVKQVSVP---ISSLWVPDLAAYNAISKPEVL---TPQLALVNSSGHVQYLPSI 119
Query: 293 TIKANCPMSLRNFPMDTQSCPLILGSYAYPIEKLVYHWTPGKSISFVPGMAISQFDFISS 352
+ +C +S + +C L GS+ + +L ++P S+F+ +
Sbjct: 120 RQRFSCDVSGVDTE-SGATCKLKFGSWTHHSRELDLQMQEADISGYIPY---SRFELVGV 175
Query: 353 PKRNFTFKRREGEFSLLQVNFNL 375
++ + V F +
Sbjct: 176 TQKRSERFYECCKEPYPDVTFTV 198
>1uw6_A Acetylcholine-binding protein; pentamer, IGG fold, nicotine,
glycoprotein; HET: NCT; 2.2A {Lymnaea stagnalis} SCOP:
b.96.1.1 PDB: 1i9b_A* 1ux2_A* 3u8l_A* 1yi5_A 1uv6_A*
3u8k_A* 3u8j_B* 3u8m_A* 3u8n_A* 2zju_A* 2zjv_A*
Length = 211
Score = 72.2 bits (177), Expect = 8e-15
Identities = 32/211 (15%), Positives = 82/211 (38%), Gaps = 10/211 (4%)
Query: 179 NLLKNYQSSEPP---NHGKGEPTIIKTNMLIRSMGPISEIDMDYSMDCYFRQYWRDSRLS 235
++L N + + P + P + ++ ++ ++EI + + + + W D L+
Sbjct: 6 DILYNIRQTSRPDVIPTQRDRPVAVSVSLKFINILEVNEITNEVDVVFWQQTTWSDRTLA 65
Query: 236 FMGPINNLSLSIKMLEKIWRPDTYILNGKQSYVHTITVPNKLLRINQDGDILYSMRLTIK 295
++ + +W PD N +L R+ DG++LY + +
Sbjct: 66 -WNSSHSPDQVSVPISSLWVPDLAAYNAISKPEVL---TPQLARVVSDGEVLYMPSIRQR 121
Query: 296 ANCPMSLRNFPMDTQSCPLILGSYAYPIEKLVYHWTPGKSISFVPGMAISQFDFISSP-- 353
+C +S + +C + +GS+ + ++ T S S+F+ +
Sbjct: 122 FSCDVSGVDTE-SGATCRIKIGSWTHHSREISVDPTTENSDDSEYFSQYSRFEILDVTQK 180
Query: 354 KRNFTFKRREGEFSLLQVNFNLKRHRGYFVI 384
K + T+ + ++V+ N ++ ++
Sbjct: 181 KNSVTYSCCPEAYEDVEVSLNFRKKGRSEIL 211
>4afh_A ACHBP; acetylcholine-binding protein, nicotinic receptor, ION
chann; HET: NAG BMA MAN L0B; 1.88A {Capitella teleta}
PDB: 4afg_A*
Length = 230
Score = 70.3 bits (172), Expect = 6e-14
Identities = 32/231 (13%), Positives = 75/231 (32%), Gaps = 30/231 (12%)
Query: 177 LNNLLKNYQS---SEPPNHGKGEPTIIKTNMLIRSMGPISEIDMDYS----MDCYFRQYW 229
LL Y+ S P +K + ++ + I + M ++ + W
Sbjct: 10 RRELLNTYEQLGKSGLPFLDDIGKVDVKFGLSLQLLKSIEQRGMGFNSIGTFKAIVKLSW 69
Query: 230 RDSRLSFM----GPINNLSLSIKMLEKIWRPDTYILNGKQSYVHTITVPNKLLRINQDGD 285
D+ L + + +S ++IW PD + N + + +G
Sbjct: 70 VDTILRWDPEPPFDFQKIEIS---PDEIWTPDIKLFNSVDLDMTLDRTTQ--AIVFSNGT 124
Query: 286 ILYSMRLTIKANCPMSLRNFPMDTQSCPLILGSYAYPIEKLVYHWTPGKS--ISFVPGMA 343
+L+ +K C D SC GS+ Y ++++ H+ K+ +
Sbjct: 125 VLWIPPAVLKVLCV-----SQDDVDSCHFQFGSWVYSVDEVDIHFMDDKAEVLLDFYQ-- 177
Query: 344 ISQFDFISSP--KRNFTFKRREGEFSLLQVNFNLKRHRGY--FVIQVYVPC 390
+ + + ++ + E + ++ L+ G + +
Sbjct: 178 -DSLEILENSAQRQEVVYPCCESAYVEMKYLLALRSENGNSTYSRDLAHHH 227
>2wn9_A Soluble acetylcholine receptor; 4-0H-DMXBA, acetylcholine binding
protein; HET: ZY5 NAG BMA MAN; 1.75A {Aplysia
californica} PDB: 2wnj_A* 2wzy_A* 2x00_A* 3peo_A*
2pgz_A* 2ph9_A* 4dbm_A* 3c84_A* 2byq_A* 2byr_A* 2bys_A*
2wnc_A* 2wnl_A* 3c79_A* 2byn_A* 3pmz_A* 2x00_D* 2xnv_A*
2xnt_A* 2xnu_A* ...
Length = 228
Score = 67.9 bits (166), Expect = 4e-13
Identities = 21/157 (13%), Positives = 51/157 (32%), Gaps = 13/157 (8%)
Query: 177 LNNLLKNYQSSEPPNHGKGEPTIIKTNMLIRSMGPISEIDMDYSMDCYFRQYWRDSRLSF 236
++L P +P + ++ + + + Y +Q W+ + L +
Sbjct: 19 KSDLFNRSPMYPGPTKD--DPLTVTLGFTLQDIVKADSSTNEVDLVYYEQQRWKLNSLMW 76
Query: 237 M----GPINNLSLSIKMLEKIWRPDTYILNGKQSYVHTITVPNKLLRINQDGDILYSMRL 292
G I + S IW PD + + ++ + DG +++
Sbjct: 77 DPNEYGNITDFRTS---AADIWTPDITAYSSTRPVQVL---SPQIAVVTHDGSVMFIPAQ 130
Query: 293 TIKANCPMSLRNFPMDTQSCPLILGSYAYPIEKLVYH 329
+ C + + +C + GS+ Y ++
Sbjct: 131 RLSFMCDPT-GVDSEEGATCAVKFGSWVYSGFEIDLK 166
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 66.8 bits (162), Expect = 9e-12
Identities = 69/447 (15%), Positives = 138/447 (30%), Gaps = 103/447 (23%)
Query: 18 NYISDYNFTFNDTVDKPSENIS---AVYNI-SAVNNLTNLFYI-------------TSDV 60
YI + +ND N+S + A+ L + DV
Sbjct: 111 MYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDV 170
Query: 61 FRSHSLIFKINEEVN-LKISSSNDTE------NELDHDFEADFL-LEKHIKQIISLVYFQ 112
S+ + K++ ++ L + + N E +L + + ++ H I
Sbjct: 171 CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIK------ 224
Query: 113 VLYLHFVSTFNVLSMF--SVKLNNGYMKIMDD-ETKTHW-----------TNRLPKVSNH 158
L S L S N + ++ + + W T R +V++
Sbjct: 225 ---LRIHSIQAELRRLLKSKPYENCLL-VLLNVQNAKAWNAFNLSCKILLTTRFKQVTDF 280
Query: 159 LKEKK-KHDLMIGKNITL-------VLNNLLKNYQSSEPPNHGKGEPTIIKT------NM 204
L H + ++TL +L L P P + +
Sbjct: 281 LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDG 340
Query: 205 LIR-------SMGPISEIDMDYSMDC----YFRQYWRDSRLS-FMGPINNLSLSIKMLEK 252
L + ++ I ++ S++ +R+ + LS F + + +L
Sbjct: 341 LATWDNWKHVNCDKLTTI-IESSLNVLEPAEYRKMFDR--LSVFP---PSAHIPTILLSL 394
Query: 253 IWRPDTY-----ILNG--------KQSYVHTITVPNKLLRINQDGDILYSMRLTIKANCP 299
IW ++N KQ TI++P+ L + + Y++ +I +
Sbjct: 395 IWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSI-VDHY 453
Query: 300 MSLRNFPMDTQSCPLILGSYAYPIEKLVYHWT---PGKSISFVPGMAISQFDFISSPKRN 356
+ F D P L Y Y + +H + ++ + + F F+ K
Sbjct: 454 NIPKTFDSDDLI-PPYLDQYFY--SHIGHHLKNIEHPERMTLFRMVFLD-FRFLEQ-KIR 508
Query: 357 FTFKRREGEFSLLQVNFNLKRHRGYFV 383
S+L LK ++ Y
Sbjct: 509 HDSTAWNASGSILNTLQQLKFYKPYIC 535
Score = 37.9 bits (87), Expect = 0.008
Identities = 45/297 (15%), Positives = 82/297 (27%), Gaps = 97/297 (32%)
Query: 17 INYISDYNFTFNDTVDKPSENISAVYNISAVNNLTNLFYITSDVFRSHSLIFKINEEVNL 76
+ N DK + I + N+ +F S VF + I + L
Sbjct: 344 WDNWKHVNC------DKLTTIIESSLNVLEPAEYRKMFDRLS-VFPPSA---HIPTIL-L 392
Query: 77 KI----SSSNDTENELDHDFEADFLLEKHIKQIISLVYFQVLYLHFVSTFNVLSMFSVKL 132
+ +D ++ L+EK K+ S + +YL
Sbjct: 393 SLIWFDVIKSDVMVVVNK-LHKYSLVEKQPKE--STISIPSIYLELKVK----------- 438
Query: 133 NNGYMKIMDDETKTHWTNRLPKVSNHLKEKKKHDLMIGKNITLVLNNLLK----NYQSSE 188
+++E H + +H K D ++L+ Y S
Sbjct: 439 -------LENEYALH-----RSIVDHYNIPKTFDS----------DDLIPPYLDQYFYSH 476
Query: 189 PPNHGKGEPTIIKTNMLIRSMGPISEIDMDYSMDCYFRQYWRDSRLSFMGPINNLSLSIK 248
+H + I+ M FR + D F+
Sbjct: 477 IGHH-------------------LKNIEHPERMT-LFRMVFLD--FRFLE---------- 504
Query: 249 MLEKIWRPDTYILNGKQSYVHTITVPNKLLRINQDGDILYSMRLTIKANCPMSLRNF 305
+KI R D+ N S ++T+ D D Y + ++ +F
Sbjct: 505 --QKI-RHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVN-------AILDF 551
Score = 37.5 bits (86), Expect = 0.012
Identities = 39/323 (12%), Positives = 103/323 (31%), Gaps = 78/323 (24%)
Query: 140 MDDET-KTHWTNRLPKVSNHLKEKKKHDLMIGKNITLVLNNLLKNYQSSEPPNHGKGEPT 198
MD ET + + + + + ++ + K++ ++ K+ S E +H
Sbjct: 7 MDFETGEHQYQYK--DILSVFEDAFVDNFDC-KDVQ----DMPKSILSKEEIDHIIMSKD 59
Query: 199 II-------------KTNMLIRSMGPISEIDMDYSMDCYFRQYWRDS--RLSFMGPINNL 243
+ + M+ + + + I+ + M + + S ++ + L
Sbjct: 60 AVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRL 119
Query: 244 SLSIKMLEK--IWRPDTYILNGKQSYVHTITVPNKLLRINQDGDI-LYSMR------LTI 294
++ K + R Y+ + LL + ++ + + + +
Sbjct: 120 YNDNQVFAKYNVSRLQPYL-----------KLRQALLELRPAKNVLIDGVLGSGKTWVAL 168
Query: 295 KANCPMSLRNFPMDTQSCPLILGSYAYPIEKLVYHW-TPGKSISFVPGMAISQFDFISSP 353
++ + + I W S + + Q +
Sbjct: 169 DV-----CLSYK--------VQCKMDFKI-----FWLNLKNCNSPETVLEMLQ-KLLYQI 209
Query: 354 KRNFTFKRREGEFSL-LQVNFNLKRHRGYFVIQVYVPCVLIV--VLS---WVSFWIH--- 404
N+T R + ++ L+++ R + Y C+L++ V + W +F +
Sbjct: 210 DPNWT-SRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKI 268
Query: 405 ----REAT-SDRIGLGITTVLTL 422
R +D + TT ++L
Sbjct: 269 LLTTRFKQVTDFLSAATTTHISL 291
>2bj0_A Acetylcholine-binding protein; 3D-structure, glycoprotein,
glycprotein, IGG fold, immunoglobulin domain, pentamer,
signal; HET: CXS; 2.0A {Bulinus truncatus}
Length = 203
Score = 54.0 bits (130), Expect = 1e-08
Identities = 25/206 (12%), Positives = 71/206 (34%), Gaps = 15/206 (7%)
Query: 177 LNNLLKNYQSSEPPNHGKGEPTIIKTNMLIRSMGPISEIDMDYSMDCYFRQYWRDSRLSF 236
LN + P ++ P + N + ++ + + + W+ S
Sbjct: 7 LNQITGES-DVIPLSNN--TPLNVSLNFKLMNIVEADTEKDQVEVVLWTQASWKVPYYSS 63
Query: 237 MGPINNLSLSIKMLEKIWRPDTYILNGKQSYVHTITVPNKLLRINQDGDILYSMRLTIKA 296
+ ++L + K+W PD N + + +++DG ++Y ++
Sbjct: 64 LLSSSSLDQVSLPVSKMWTPDLSFYNAIAAPELL---SADRVVVSKDGSVIYVPSQRVRF 120
Query: 297 NCPMSLRNFPMDTQSCPLILGSYAYPIEKLVYHWTPGKSI---SFVPGMAISQFDFISSP 353
C + + +C + +GS+ + ++ + + +FD +S+
Sbjct: 121 TCDL-INVDTEPGATCRIKVGSWTHDNKQFALITGEEGVVNIAEYFDS---PKFDLLSAT 176
Query: 354 --KRNFTFKRREGEFSLLQVNFNLKR 377
+ E + +++ F ++
Sbjct: 177 QSLNRKKYSCCENMYDDIEITFAFRK 202
>2lly_A Neuronal acetylcholine receptor subunit alpha-4; transmembrane
domain, transport PROT; NMR {Homo sapiens}
Length = 137
Score = 45.2 bits (107), Expect = 5e-06
Identities = 18/90 (20%), Positives = 41/90 (45%), Gaps = 5/90 (5%)
Query: 374 NLKRHRGYFVIQVYVPCVLIVVLSWVSFWIHREATSDRIGLGITTVLTLSTISLDSRTDL 433
N + ++ I + +PC+LI L+ + F++ E ++I L I+ +L+L+ L +
Sbjct: 2 NAEELPLFYTINLIIPCLLISCLTVLVFYLPSEC-GEKITLCISVLLSLTVFLLLITEII 60
Query: 434 PKVRYATALDWFLLMSFFYCIATILEFAAV 463
P +T+ + + + + V
Sbjct: 61 P----STSSVSPSIGEYLLFTMIFVTLSIV 86
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 48.1 bits (114), Expect = 6e-06
Identities = 59/369 (15%), Positives = 108/369 (29%), Gaps = 148/369 (40%)
Query: 12 QLRLDINYISDYNFTFNDTVDKPSENISAVYNISAVNNLTNLF--YITSDVFRSHSLIFK 69
QL+ + FN + +P+E +A + L F Y++S V S F
Sbjct: 32 QLQ-------E---QFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQF- 80
Query: 70 INEEVNLKISSSNDTENELDHDFEADFLLEKHIKQIISLVYFQVLYLH-FVSTFNVLSMF 128
++V L + L FE +L I H +
Sbjct: 81 --DQV-LNLC--------LTE-FENCYLEGNDI--------------HALAAKL------ 108
Query: 129 SVKLNNGYMKIMDDETKTHWTNRLPKVSNHLKEKKKHDLMIGKNITLVLNNLLKNY---- 184
+ +++T K K L+KNY
Sbjct: 109 ----------LQENDTTL--------------VKTK--------------ELIKNYITAR 130
Query: 185 QSSEPPNHGKGEPTIIKTNMLIRSM--------------GPISEIDMDYSMDCYF---RQ 227
++ P K L R++ G + YF R
Sbjct: 131 IMAKRPFDKKSNSA------LFRAVGEGNAQLVAIFGGQGNTDD---------YFEELRD 175
Query: 228 YWRDSRLSFMGPINNLSLSIKMLEKIWRPDTYILNGKQSYVHTITVPNKLLRINQDGDIL 287
++ +G + + S + L ++ R + ++ + + + L + D
Sbjct: 176 LYQTYH-VLVGDL--IKFSAETLSELIRTTL---DAEKVFTQGLNILEWLENPSNTPDKD 229
Query: 288 YSMRLTIKANCPMSLRNFPMDTQSCPLI----LGSYAYPIEKLVYHWTPGKSISFVPGMA 343
Y L + P+S CPLI L Y + L +TPG+ S++ G
Sbjct: 230 Y---L---LSIPIS----------CPLIGVIQLAHYVVTAKLL--GFTPGELRSYLKGAT 271
Query: 344 ISQFDFISS 352
+++
Sbjct: 272 GHSQGLVTA 280
Score = 35.4 bits (81), Expect = 0.057
Identities = 36/222 (16%), Positives = 72/222 (32%), Gaps = 97/222 (43%)
Query: 38 ISAV----------YNISAVNNLTNLFYI---TSDVFRSHSL---IFKINEEVN------ 75
++AV + +S +T LF+I + + + SL I + + E N
Sbjct: 278 VTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSP 337
Query: 76 -LKISSSNDTENELDHDFEADFLLEKHI----------KQI-ISLV----YFQVLYLHFV 119
L IS+ + ++ ++ KQ+ ISLV + V
Sbjct: 338 MLSISNLTQEQ------------VQDYVNKTNSHLPAGKQVEISLVNGAK-------NLV 378
Query: 120 STFNVLSMFSVKLNNGYMKIM----DDETKTHWTNRLPKVSN---------H-------- 158
+ S++ LN K D+++ ++ R K SN H
Sbjct: 379 VSGPPQSLYG--LNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPAS 436
Query: 159 ------LKEK----KKHDLMI-------GKNITLVLNNLLKN 183
L + D+ I G ++ ++ ++ +
Sbjct: 437 DLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISER 478
Score = 33.9 bits (77), Expect = 0.14
Identities = 44/255 (17%), Positives = 73/255 (28%), Gaps = 106/255 (41%)
Query: 209 MGPISEIDMD-YSMDCYFRQYWRDSRLSFMGPINNLSLSIKMLEKIWRPDTYILNGKQSY 267
MG MD Y + W + F + SI I N
Sbjct: 1631 MG------MDLYKTSKAAQDVWNRADNHFK---DTYGFSIL---DIVIN-----NPVNLT 1673
Query: 268 VHTITVPNKLLRIN---------QDGDILYSMRLTIKANCPMSLRNF--PMD-------T 309
+H K +R N DG + + ++ + N + F T
Sbjct: 1674 IHFGGEKGKRIRENYSAMIFETIVDGKLK-TEKIFKEINEHSTSYTFRSEKGLLSATQFT 1732
Query: 310 QSCPLI---------------------------LGSY--------AYPIE---KLVYHWT 331
Q P + LG Y IE ++V++
Sbjct: 1733 Q--PALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFY-- 1788
Query: 332 PGKSISF-VPG--MAISQFDFIS-SPKR---NFT----------FKRREGEFSLLQ-VNF 373
G ++ VP + S + I+ +P R +F+ +R G ++ VN+
Sbjct: 1789 RGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWL--VEIVNY 1846
Query: 374 NLKRHRGYFVIQVYV 388
N+ Q YV
Sbjct: 1847 NV---EN----QQYV 1854
Score = 31.9 bits (72), Expect = 0.51
Identities = 46/269 (17%), Positives = 85/269 (31%), Gaps = 111/269 (41%)
Query: 185 QSSEPP-------NHGKGEPTIIKTNML-IRSMGP---ISEIDMDYSMDCYFRQYW-RDS 232
+S PP + +G P + ML I ++ ++ +
Sbjct: 316 NTSLPPSILEDSLENNEGVP----SPMLSISNLTQEQVQDYVN-------KTNSHLPAGK 364
Query: 233 RLSFMGPINNLSLSIKMLEKIWRPDTYILNGKQSYVHTITVP-------NKLLR------ 279
++ +SL +NG ++ V ++ P N LR
Sbjct: 365 QVE-------ISL---------------VNGAKNLV--VSGPPQSLYGLNLTLRKAKAPS 400
Query: 280 -INQDGDILYSMRLTIKANCPMSLRNF-PMDTQSCPL---ILGSYAYPIEKLVYHWTPGK 334
++Q I +S R K S R F P+ + P +L P L+
Sbjct: 401 GLDQSR-IPFSER---KLKF--SNR-FLPV---ASPFHSHLLV----PASDLINKDLVKN 446
Query: 335 SISFVPG-MAISQFDFISSPKRNFTFKRREGEFSLLQVNFNLKRHRGYFVIQVYVPCVLI 393
++SF + I +D TF +G +L+ G + + V C++
Sbjct: 447 NVSFNAKDIQIPVYD---------TF---DGS--------DLRVLSGS-ISERIVDCIIR 485
Query: 394 VVLSWVSFWIHREATSDRIGLGITTVLTL 422
+ + W E T+ T +L
Sbjct: 486 LPVKW-------ETTTQ---FKATHILDF 504
>2ksr_A Neuronal acetylcholine receptor subunit beta-2; nicotinic
acetylcholine receptors, transmembrane domain, HFI
junction, cell membrane; NMR {Homo sapiens} PDB: 2lm2_A
Length = 164
Score = 44.4 bits (105), Expect = 1e-05
Identities = 23/98 (23%), Positives = 46/98 (46%), Gaps = 5/98 (5%)
Query: 366 FSLLQVNFNLKRHRGYFVIQVYVPCVLIVVLSWVSFWIHREATSDRIGLGITTVLTLSTI 425
L N +R ++ I + +PCVLI L+ + F++ + +++ L I+ +L L+
Sbjct: 15 TENLYFQSNARRKPLFYTINLIIPCVLITSLAILVFYLPSDCG-EKMTLCISVLLALTVF 73
Query: 426 SLDSRTDLPKVRYATALDWFLLMSFFYCIATILEFAAV 463
L +P T+LD L+ + ++ F+ V
Sbjct: 74 LLLISKIVP----PTSLDVPLVGKYLMFTMVLVTFSIV 107
>1mot_A Glycine receptor alpha-1 chain; second transmembrane domain,
micelles, membrane protein; NMR {Homo sapiens} SCOP:
j.35.1.1
Length = 28
Score = 38.9 bits (90), Expect = 7e-05
Identities = 17/25 (68%), Positives = 20/25 (80%)
Query: 411 RIGLGITTVLTLSTISLDSRTDLPK 435
R+GLGITTVLT++T S SR LPK
Sbjct: 4 RVGLGITTVLTMTTQSSGSRASLPK 28
>1oed_E Acetylcholine receptor protein, gamma chain; ION channel/receptor,
ION channel, tubular crystal, transmembrane; 4.0A
{Torpedo marmorata} SCOP: f.36.1.1
Length = 260
Score = 43.0 bits (100), Expect = 1e-04
Identities = 12/55 (21%), Positives = 27/55 (49%)
Query: 381 YFVIQVYVPCVLIVVLSWVSFWIHREATSDRIGLGITTVLTLSTISLDSRTDLPK 435
+++I + PCVLI L + +++ +A + L I+ +L + +P+
Sbjct: 3 FYIINIIAPCVLISSLVVLVYFLPAQAGGQKCTLSISVLLAQTIFLFLIAQKVPE 57
>2lkg_A Acetylcholine receptor; transmembrane domain, SIGN protein; NMR
{Torpedo marmorata} PDB: 2lkh_A
Length = 140
Score = 41.0 bits (96), Expect = 1e-04
Identities = 14/98 (14%), Positives = 35/98 (35%), Gaps = 5/98 (5%)
Query: 366 FSLLQVNFNLKRHRGYFVIQVYVPCVLIVVLSWVSFWIHREATSDRIGLGITTVLTLSTI 425
L YFV+ V PC L+ + F++ ++ +++ + + +L+
Sbjct: 36 LIELSQEGGGGGGPLYFVVNVIEPCKKFSELTGLVFYLPTDSG-EKMTESKSVLKSLTEK 94
Query: 426 SLDSRTDLPKVRYATALDWFLLMSFFYCIATILEFAAV 463
+P +T+ L+ + +E +
Sbjct: 95 LKKIVELIP----STSSAVPLIGKYMLFTKEFVESSIK 128
>1oed_B Acetylcholine receptor protein, beta chain; ION channel/receptor,
ION channel, tubular crystal, transmembrane; 4.0A
{Torpedo marmorata} SCOP: f.36.1.1 PDB: 2k58_B
Length = 250
Score = 40.7 bits (94), Expect = 6e-04
Identities = 16/83 (19%), Positives = 46/83 (55%), Gaps = 5/83 (6%)
Query: 381 YFVIQVYVPCVLIVVLSWVSFWIHREATSDRIGLGITTVLTLSTISLDSRTDLPKVRYAT 440
++++ +PC+LI +L+ + F++ +A +++ L I+ +L ++ L +P+ T
Sbjct: 3 FYIVYTIIPCILISILAILVFYLPPDAG-EKMSLSISALLAVTVFLLLLADKVPE----T 57
Query: 441 ALDWFLLMSFFYCIATILEFAAV 463
+L +++ + I ++ F+ +
Sbjct: 58 SLSVPIIIRYLMFIMILVAFSVI 80
>1oed_A Acetylcholine receptor protein, alpha chain; ION channel/receptor,
ION channel, tubular crystal, transmembrane; 4.0A
{Torpedo marmorata} SCOP: f.36.1.1 PDB: 1dxz_A 3mra_A
2k59_B
Length = 227
Score = 39.8 bits (92), Expect = 9e-04
Identities = 17/83 (20%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
Query: 381 YFVIQVYVPCVLIVVLSWVSFWIHREATSDRIGLGITTVLTLSTISLDSRTDLPKVRYAT 440
YFV+ V +PC+L L+ + F++ ++ +++ L I+ +L+L+ L +P T
Sbjct: 3 YFVVNVIIPCLLFSFLTGLVFYLPTDS-GEKMTLSISVLLSLTVFLLVIVELIPS----T 57
Query: 441 ALDWFLLMSFFYCIATILEFAAV 463
+ L+ + + + +
Sbjct: 58 SSAVPLIGKYMLFTMIFVISSII 80
>1oed_C Acetylcholine receptor protein, delta chain; ION channel/receptor,
ION channel, tubular crystal, transmembrane; 4.0A
{Torpedo marmorata} SCOP: f.36.1.1 PDB: 1a11_A 1cek_A
1eq8_A
Length = 260
Score = 37.2 bits (85), Expect = 0.007
Identities = 21/83 (25%), Positives = 42/83 (50%), Gaps = 5/83 (6%)
Query: 381 YFVIQVYVPCVLIVVLSWVSFWIHREATSDRIGLGITTVLTLSTISLDSRTDLPKVRYAT 440
++VI PCVLI L+ ++F++ E+ +++ I+ +L + L + LP+ T
Sbjct: 3 FYVINFITPCVLISFLASLAFYLPAESG-EKMSTAISVLLAQAVFLLLTSQRLPE----T 57
Query: 441 ALDWFLLMSFFYCIATILEFAAV 463
AL L+ + I +++ V
Sbjct: 58 ALAVPLIGKYLMFIMSLVTGVIV 80
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.6 bits (73), Expect = 0.14
Identities = 4/16 (25%), Positives = 10/16 (62%), Gaps = 3/16 (18%)
Query: 246 SIKMLE---KIWRPDT 258
++K L+ K++ D+
Sbjct: 21 ALKKLQASLKLYADDS 36
Score = 28.8 bits (63), Expect = 2.7
Identities = 11/45 (24%), Positives = 15/45 (33%), Gaps = 17/45 (37%)
Query: 161 EKKKHDLMIGKNITLVLNNLLKNYQSSEPPNHGKGEPTI-IKTNM 204
EK+ + K L LK Y + P + IK M
Sbjct: 18 EKQA----LKK-----LQASLKLYA----DDSA---PALAIKATM 46
>3vld_A DNA mismatch repair protein HSM3; heat repeat, RPT1, chaperone;
HET: DNA; 2.05A {Saccharomyces cerevisiae} PDB: 3vle_A*
3vlf_A* 4a3v_A* 4a3t_A*
Length = 500
Score = 30.1 bits (67), Expect = 1.8
Identities = 28/160 (17%), Positives = 50/160 (31%), Gaps = 22/160 (13%)
Query: 46 AVNNLTNLFYITSDVFRSHSLIFKINEEVNLKISSSNDTENELDHDFEADFLLEKHIKQI 105
+ N L LF S + +FK ++ +LKI S E +L++ H +
Sbjct: 304 STNCLLQLFAEVSRIEEDEYSLFKTMDKDSLKIGSEAKLITEWLELINPQYLVKYHKDVV 363
Query: 106 ISLVYFQV----LYLHFVSTFNVLSMFSVKLNNG------YMKIMD--------DETKTH 147
+ + + + + + K + Y++ M + T
Sbjct: 364 ENYFHVSGYSIGMLRNLSADEECFNAIRNKFSAEIVLRLPYLEQMQVVETLTRYEYTSKF 423
Query: 148 WTNRLPKVSNHLKEKKKHDLMIGKNI----TLVLNNLLKN 183
N +PKV L +I L NLL
Sbjct: 424 LLNEMPKVMGSLIGDGSAGAIIDLETVHYRNSALRNLLDK 463
>4epa_A Pesticin receptor; TONB dependent transporter, iron import, metal
transport; HET: LDA; 3.20A {Yersinia pestis}
Length = 655
Score = 30.0 bits (68), Expect = 2.1
Identities = 10/56 (17%), Positives = 23/56 (41%), Gaps = 10/56 (17%)
Query: 13 LRLDINYISDYNFTFNDTVDKPSE---NISAVYNISA-------VNNLTNLFYITS 58
RL +N + + F ++ + + + + S + + V+NL + Y T
Sbjct: 573 PRLAVNLVGPHYFDGDNQLRQGTYATLDSSLGWQATERMNISVYVDNLFDRRYRTY 628
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.138 0.418
Gapped
Lambda K H
0.267 0.0703 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,300,220
Number of extensions: 421322
Number of successful extensions: 688
Number of sequences better than 10.0: 1
Number of HSP's gapped: 625
Number of HSP's successfully gapped: 48
Length of query: 488
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 391
Effective length of database: 3,993,456
Effective search space: 1561441296
Effective search space used: 1561441296
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 59 (26.6 bits)