RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12313
(488 letters)
>d1uw6a_ b.96.1.1 (A:) Acetylcholine binding protein (ACHBP) {Great
pond snail (Lymnaea stagnalis) [TaxId: 6523]}
Length = 208
Score = 99.1 bits (246), Expect = 1e-24
Identities = 32/204 (15%), Positives = 82/204 (40%), Gaps = 10/204 (4%)
Query: 179 NLLKNYQSSEPPN---HGKGEPTIIKTNMLIRSMGPISEIDMDYSMDCYFRQYWRDSRLS 235
++L N + + P+ + P + ++ ++ ++EI + + + + W D L+
Sbjct: 6 DILYNIRQTSRPDVIPTQRDRPVAVSVSLKFINILEVNEITNEVDVVFWQQTTWSDRTLA 65
Query: 236 FMGPINNLSLSIKMLEKIWRPDTYILNGKQSYVHTITVPNKLLRINQDGDILYSMRLTIK 295
+ ++ + +W PD N +L R+ DG++LY + +
Sbjct: 66 W-NSSHSPDQVSVPISSLWVPDLAAYNAISKPEVL---TPQLARVVSDGEVLYMPSIRQR 121
Query: 296 ANCPMSLRNFPMDTQSCPLILGSYAYPIEKLVYHWTPGKSISFVPGMAISQFDFISSP-- 353
+C +S + +C + +GS+ + ++ T S S+F+ +
Sbjct: 122 FSCDVSGVDTESG-ATCRIKIGSWTHHSREISVDPTTENSDDSEYFSQYSRFEILDVTQK 180
Query: 354 KRNFTFKRREGEFSLLQVNFNLKR 377
K + T+ + ++V+ N ++
Sbjct: 181 KNSVTYSCCPEAYEDVEVSLNFRK 204
>d1oede_ f.36.1.1 (E:) Acetylcholine receptor protein, gamma chain
{Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Length = 260
Score = 82.2 bits (202), Expect = 3e-18
Identities = 15/87 (17%), Positives = 36/87 (41%), Gaps = 1/87 (1%)
Query: 381 YFVIQVYVPCVLIVVLSWVSFWIHREATSDRIGLGITTVLTLSTISLDSRTDLPKVRYAT 440
+++I + PCVLI L + +++ +A + L I+ +L + +P+
Sbjct: 3 FYIINIIAPCVLISSLVVLVYFLPAQAGGQKCTLSISVLLAQTIFLFLIAQKVPETSLNV 62
Query: 441 -ALDWFLLMSFFYCIATILEFAAVHYF 466
+ +L+ F + ++ V
Sbjct: 63 PLIGKYLIFVMFVSMLIVMNCVIVLNV 89
>d1oedb_ f.36.1.1 (B:) Acetylcholine receptor protein, beta chain
{Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Length = 250
Score = 77.5 bits (190), Expect = 9e-17
Identities = 15/102 (14%), Positives = 44/102 (43%), Gaps = 2/102 (1%)
Query: 381 YFVIQVYVPCVLIVVLSWVSFWIHREATSDRIGLGITTVLTLSTISLDSRTDLPKVRYAT 440
++++ +PC+LI +L+ + F++ +A +++ L I+ +L ++ L +P+ +
Sbjct: 3 FYIVYTIIPCILISILAILVFYLPPDA-GEKMSLSISALLAVTVFLLLLADKVPETSLSV 61
Query: 441 -ALDWFLLMSFFYCIATILEFAAVHYFTKLCYPGYPSGFIER 481
+ +L+ +++ V + R
Sbjct: 62 PIIIRYLMFIMILVAFSVILSVVVLNLHHRSPNTHTMPNWIR 103
>d1oeda_ f.36.1.1 (A:) Acetylcholine receptor protein, alpha chain
{Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Length = 227
Score = 74.4 bits (182), Expect = 8e-16
Identities = 20/87 (22%), Positives = 45/87 (51%), Gaps = 2/87 (2%)
Query: 381 YFVIQVYVPCVLIVVLSWVSFWIHREATSDRIGLGITTVLTLSTISLDSRTDLPKVRYAT 440
YFV+ V +PC+L L+ + F++ ++ +++ L I+ +L+L+ L +P A
Sbjct: 3 YFVVNVIIPCLLFSFLTGLVFYLPTDS-GEKMTLSISVLLSLTVFLLVIVELIPSTSSAV 61
Query: 441 -ALDWFLLMSFFYCIATILEFAAVHYF 466
+ ++L + + I++I+ V
Sbjct: 62 PLIGKYMLFTMIFVISSIIITVVVINT 88
>d1oedc_ f.36.1.1 (C:) Acetylcholine receptor protein, delta chain
{Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Length = 260
Score = 74.8 bits (183), Expect = 8e-16
Identities = 19/87 (21%), Positives = 39/87 (44%), Gaps = 2/87 (2%)
Query: 381 YFVIQVYVPCVLIVVLSWVSFWIHREATSDRIGLGITTVLTLSTISLDSRTDLPKV-RYA 439
++VI PCVLI L+ ++F++ E+ +++ I+ +L + L + LP+
Sbjct: 3 FYVINFITPCVLISFLASLAFYLPAES-GEKMSTAISVLLAQAVFLLLTSQRLPETALAV 61
Query: 440 TALDWFLLMSFFYCIATILEFAAVHYF 466
+ +L+ I+ V F
Sbjct: 62 PLIGKYLMFIMSLVTGVIVNCGIVLNF 88
>d1esfa1 b.40.2.2 (A:1-120) Staphylococcal enterotoxin A, SEA
{Staphylococcus aureus [TaxId: 1280]}
Length = 120
Score = 29.4 bits (66), Expect = 0.38
Identities = 18/80 (22%), Positives = 28/80 (35%), Gaps = 18/80 (22%)
Query: 33 KPSENISAVYNISAVNNLTNLFY----------ITSDVFRSHSLIFKINEEVNLKISSSN 82
K SE +A+ NL ++Y + D F H+++FK S N
Sbjct: 14 KKSE-----LQGTALGNLKQIYYYNEKAKTENKESHDQFLQHTILFKGF---FTDHSWYN 65
Query: 83 DTENELDHDFEADFLLEKHI 102
D + D D K +
Sbjct: 66 DLLVDFDSKDIVDKYKGKKV 85
>d1fnua1 b.40.2.2 (A:1-107) Streptococcal pyrogenic exotoxin A1
{Streptococcus pyogenes [TaxId: 1314]}
Length = 107
Score = 27.5 bits (61), Expect = 1.6
Identities = 15/82 (18%), Positives = 33/82 (40%), Gaps = 18/82 (21%)
Query: 33 KPSENISAVYNISAVNNLTNLFY------------ITSDVFRSHSLIFKINEEVNLKISS 80
+ + S ++ S V NL N+++ + D SH LI+ ++ +
Sbjct: 1 QQDPDPSQLHRSSLVKNLQNIYFLYEGDPVTHENVKSVDQLLSHDLIYNVSG------PN 54
Query: 81 SNDTENELDHDFEADFLLEKHI 102
+ + EL + A +K++
Sbjct: 55 YDKLKTELKNQEMATLFKDKNV 76
>d2aq2b1 b.40.2.2 (B:2-119) Streptococcal superantigen SSA
{Streptococcus pyogenes [TaxId: 1314]}
Length = 118
Score = 27.5 bits (61), Expect = 1.7
Identities = 12/67 (17%), Positives = 29/67 (43%), Gaps = 12/67 (17%)
Query: 45 SAVNNLTNLFY---------ITSDVFRSHSLIFKINEEVNLKISSSNDTENELDHDFEAD 95
+ N+ L+ + D F +H LI+ I+ + K+ + + + EL ++ A
Sbjct: 18 GTMGNMKYLYDDHYVSATKVKSVDKFLAHDLIYNIS---DKKLKNYDKVKTELLNEDLAK 74
Query: 96 FLLEKHI 102
++ +
Sbjct: 75 KYKDEVV 81
>d1bxta1 b.40.2.2 (A:1-119) Streptococcal superantigen SSA
{Streptococcus pyogenes [TaxId: 1314]}
Length = 119
Score = 26.3 bits (58), Expect = 4.2
Identities = 13/67 (19%), Positives = 24/67 (35%), Gaps = 12/67 (17%)
Query: 45 SAVNNLTNLFY---------ITSDVFRSHSLIFKINEEVNLKISSSNDTENELDHDFEAD 95
+ NL L+ ++ H LIF I +LK+ + + + E + A
Sbjct: 19 GVMGNLRCLYDNHFVEGTNVRSTGQLLQHDLIFPIK---DLKLKNYDSVKTEFNSKDLAT 75
Query: 96 FLLEKHI 102
K +
Sbjct: 76 KYKNKDV 82
>d1enfa1 b.40.2.2 (A:2-101) Staphylococcal enterotoxin H, SEH
{Staphylococcus aureus [TaxId: 1280]}
Length = 100
Score = 25.9 bits (57), Expect = 4.4
Identities = 10/65 (15%), Positives = 19/65 (29%), Gaps = 14/65 (21%)
Query: 46 AVNNLTNLFY--------ITSDVFRSHSLIFKINEEVNLKISSSNDTENELDHDFEADFL 97
A+ N + + ++ LIF+ S ND + A
Sbjct: 12 ALANAYGQYNHPFIKENIKSDEISGEKDLIFRNQ------GDSGNDLRVKFATADLAQKF 65
Query: 98 LEKHI 102
K++
Sbjct: 66 KNKNV 70
>d2g9hd1 b.40.2.2 (D:4-86) Enterotoxin type I, SEI {Staphylococcus
aureus [TaxId: 1280]}
Length = 83
Score = 25.5 bits (56), Expect = 5.0
Identities = 7/36 (19%), Positives = 12/36 (33%), Gaps = 10/36 (27%)
Query: 46 AVNNLTNLFY----------ITSDVFRSHSLIFKIN 71
V NL N + I ++ ++ L F
Sbjct: 2 GVGNLRNFYTKHDYIDLKGLIDKNLPSANQLEFSTG 37
>d2nn6h1 b.40.4.5 (H:73-167) S1-domain of Ribosomal RNA-processing
protein 4, RRP4 {Human (Homo sapiens) [TaxId: 9606]}
Length = 95
Score = 25.3 bits (55), Expect = 6.1
Identities = 7/54 (12%), Positives = 17/54 (31%)
Query: 238 GPINNLSLSIKMLEKIWRPDTYILNGKQSYVHTITVPNKLLRINQDGDILYSMR 291
+ S+++ E R L + + ++ + DG + R
Sbjct: 34 SVLLLSSMNLPGGELRRRSAEDELAMRGFLQEGDLISAEVQAVFSDGAVSLHTR 87
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.138 0.418
Gapped
Lambda K H
0.267 0.0582 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,830,050
Number of extensions: 84982
Number of successful extensions: 196
Number of sequences better than 10.0: 1
Number of HSP's gapped: 190
Number of HSP's successfully gapped: 17
Length of query: 488
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 399
Effective length of database: 1,185,626
Effective search space: 473064774
Effective search space used: 473064774
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.3 bits)