Query psy12315
Match_columns 120
No_of_seqs 114 out of 1051
Neff 7.7
Searched_HMMs 46136
Date Fri Aug 16 15:55:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12315.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12315hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK15022 ferritin-like protein 100.0 5.8E-38 1.3E-42 221.4 13.7 106 10-118 2-107 (167)
2 cd00904 Ferritin Ferritin iron 100.0 1.2E-35 2.6E-40 208.6 13.8 108 11-118 1-108 (160)
3 PRK10304 ferritin; Provisional 100.0 2.4E-35 5.2E-40 208.2 13.6 107 9-118 1-107 (165)
4 COG1528 Ftn Ferritin-like prot 100.0 9.4E-34 2E-38 198.2 13.6 106 10-118 2-107 (167)
5 cd01056 Euk_Ferritin eukaryoti 100.0 2E-33 4.3E-38 197.4 13.8 108 11-118 1-108 (161)
6 KOG2332|consensus 100.0 2.5E-34 5.5E-39 203.2 7.3 115 4-118 7-121 (178)
7 cd01055 Nonheme_Ferritin nonhe 100.0 8.7E-29 1.9E-33 172.2 13.7 105 11-118 1-105 (156)
8 PRK10635 bacterioferritin; Pro 99.9 5.2E-25 1.1E-29 154.5 13.6 104 10-117 3-106 (158)
9 TIGR00754 bfr bacterioferritin 99.9 4.1E-23 9E-28 144.3 13.6 103 11-117 4-106 (157)
10 cd00907 Bacterioferritin Bacte 99.9 2.5E-20 5.4E-25 128.9 13.5 103 11-117 3-105 (153)
11 cd01041 Rubrerythrin Rubreryth 99.8 4E-20 8.7E-25 126.1 11.0 97 14-118 2-99 (134)
12 PF00210 Ferritin: Ferritin-li 99.8 8.6E-20 1.9E-24 123.3 11.1 100 15-118 1-105 (142)
13 COG2193 Bfr Bacterioferritin ( 99.8 1.4E-18 2.9E-23 119.5 13.0 103 11-117 4-106 (157)
14 cd01052 DPSL DPS-like protein, 99.8 4.3E-18 9.3E-23 117.1 13.4 105 11-118 4-118 (148)
15 cd01046 Rubrerythrin_like rubr 99.7 3.3E-16 7.2E-21 105.7 11.0 87 14-118 2-88 (123)
16 PRK13456 DNA protection protei 99.6 1.9E-13 4.1E-18 97.7 13.0 105 11-119 18-133 (186)
17 cd07908 Mn_catalase_like Manga 99.1 3.6E-09 7.8E-14 73.4 13.0 106 11-119 11-127 (154)
18 cd00657 Ferritin_like Ferritin 99.0 1.3E-08 2.9E-13 65.5 12.5 96 17-118 2-102 (130)
19 cd01043 DPS DPS protein, ferri 99.0 1.3E-08 2.9E-13 69.3 11.2 98 17-117 2-107 (139)
20 cd01045 Ferritin_like_AB Uncha 98.8 9.4E-08 2E-12 63.7 9.5 99 16-119 1-112 (139)
21 PF02915 Rubrerythrin: Rubrery 98.7 4.8E-07 1E-11 60.3 10.6 101 16-119 1-110 (137)
22 cd01051 Mn_catalase Manganese 98.6 5.5E-06 1.2E-10 58.1 13.5 105 11-119 18-125 (156)
23 COG1633 Uncharacterized conser 98.2 9.4E-05 2E-09 52.9 12.8 102 13-119 24-139 (176)
24 PRK09448 DNA starvation/statio 98.1 0.00024 5.3E-09 50.0 13.2 102 12-116 21-130 (162)
25 cd01044 Ferritin_CCC1_N Ferrit 97.9 6.8E-05 1.5E-09 50.3 7.6 96 17-117 2-100 (125)
26 COG2406 Protein distantly rela 97.9 0.0016 3.5E-08 45.3 13.2 104 12-117 16-128 (172)
27 PF09537 DUF2383: Domain of un 97.4 0.0011 2.4E-08 43.3 7.0 99 13-116 1-109 (111)
28 PF13668 Ferritin_2: Ferritin- 97.3 0.023 4.9E-07 38.3 13.3 102 15-119 3-108 (137)
29 COG1592 Rubrerythrin [Energy p 97.2 0.004 8.7E-08 44.1 8.4 61 13-75 4-64 (166)
30 COG0783 Dps DNA-binding ferrit 97.1 0.042 9.2E-07 38.6 13.0 102 12-117 14-123 (156)
31 PRK12775 putative trifunctiona 96.8 0.028 6E-07 49.7 12.0 103 12-119 859-967 (1006)
32 TIGR02284 conserved hypothetic 96.7 0.036 7.9E-07 38.0 9.6 98 15-117 2-109 (139)
33 cd01048 Ferritin_like_AB2 Unch 96.5 0.14 3.1E-06 34.8 11.4 94 16-118 3-107 (135)
34 cd01042 DMQH Demethoxyubiquino 95.6 0.057 1.2E-06 38.3 6.5 91 24-119 11-108 (165)
35 cd07910 MiaE MiaE tRNA-modifyi 95.2 0.35 7.7E-06 34.7 9.2 68 13-86 18-85 (180)
36 PF12902 Ferritin-like: Ferrit 94.0 0.42 9.1E-06 35.5 7.7 62 18-81 1-62 (227)
37 cd01041 Rubrerythrin Rubreryth 92.1 1.1 2.4E-05 30.0 7.0 60 12-73 72-132 (134)
38 PF03232 COQ7: Ubiquinone bios 92.1 1.4 3E-05 31.4 7.6 100 15-118 4-110 (172)
39 cd01046 Rubrerythrin_like rubr 91.9 1.2 2.6E-05 29.6 6.9 59 12-72 62-120 (123)
40 PF02915 Rubrerythrin: Rubrery 90.1 2.7 5.8E-05 27.2 7.3 53 12-69 83-135 (137)
41 cd07908 Mn_catalase_like Manga 89.9 2.1 4.6E-05 29.2 6.8 54 12-70 100-153 (154)
42 cd07648 F-BAR_FCHO The F-BAR ( 89.3 1.7 3.6E-05 32.5 6.3 68 46-117 21-88 (261)
43 cd07674 F-BAR_FCHO1 The F-BAR 89.0 1.6 3.5E-05 32.8 6.1 65 47-115 22-86 (261)
44 cd01055 Nonheme_Ferritin nonhe 88.4 4.1 8.9E-05 27.7 7.4 59 13-73 80-138 (156)
45 cd01045 Ferritin_like_AB Uncha 87.8 5.5 0.00012 25.7 7.6 55 11-70 84-138 (139)
46 cd07673 F-BAR_FCHO2 The F-BAR 86.9 2.8 6E-05 31.8 6.2 35 47-81 29-63 (269)
47 cd07647 F-BAR_PSTPIP The F-BAR 86.6 2.7 5.8E-05 31.1 6.0 32 46-77 21-52 (239)
48 COG1633 Uncharacterized conser 85.9 7.9 0.00017 27.6 7.8 59 11-74 111-169 (176)
49 PF14530 DUF4439: Domain of un 84.0 11 0.00024 25.6 12.1 94 17-116 1-94 (131)
50 cd07610 FCH_F-BAR The Extended 83.9 5.6 0.00012 27.8 6.3 35 46-80 16-50 (191)
51 PF04305 DUF455: Protein of un 83.8 4.9 0.00011 30.4 6.3 76 12-92 65-140 (253)
52 PF07875 Coat_F: Coat F domain 83.0 7.2 0.00016 22.8 7.6 57 17-78 5-61 (64)
53 cd00657 Ferritin_like Ferritin 83.0 8.6 0.00019 23.6 7.0 53 13-70 77-129 (130)
54 COG3546 Mn-containing catalase 81.5 7.2 0.00016 29.8 6.3 65 11-80 18-85 (277)
55 cd07651 F-BAR_PombeCdc15_like 81.4 5.6 0.00012 29.2 5.8 33 46-78 21-53 (236)
56 COG2941 CAT5 Ubiquinone biosyn 80.8 6.3 0.00014 28.7 5.6 53 23-80 51-103 (204)
57 cd01051 Mn_catalase Manganese 80.8 16 0.00035 25.4 7.9 60 10-74 96-155 (156)
58 PF11860 DUF3380: Protein of u 79.0 6.8 0.00015 28.0 5.3 59 15-75 77-135 (175)
59 PF05067 Mn_catalase: Manganes 78.3 5.9 0.00013 30.5 5.1 103 11-117 18-162 (283)
60 PRK12775 putative trifunctiona 77.6 15 0.00031 33.1 8.0 58 14-75 942-999 (1006)
61 cd07652 F-BAR_Rgd1 The F-BAR ( 77.5 13 0.00029 27.4 6.7 33 46-78 21-53 (234)
62 smart00055 FCH Fes/CIP4 homolo 76.9 14 0.0003 22.4 7.5 53 46-105 25-77 (87)
63 PF05974 DUF892: Domain of unk 76.8 22 0.00048 24.6 8.6 65 11-80 3-67 (159)
64 cd07649 F-BAR_GAS7 The F-BAR ( 76.4 12 0.00026 27.8 6.2 39 46-84 21-59 (233)
65 PF06175 MiaE: tRNA-(MS[2]IO[6 75.8 24 0.00053 26.5 7.6 72 12-85 26-136 (240)
66 cd00907 Bacterioferritin Bacte 74.2 23 0.00051 23.7 7.4 57 13-71 81-137 (153)
67 PF00611 FCH: Fes/CIP4, and EF 70.3 21 0.00046 21.5 5.6 30 46-75 25-54 (91)
68 PF08066 PMC2NT: PMC2NT (NUC01 70.2 7.8 0.00017 24.4 3.4 57 46-103 22-79 (91)
69 PF00210 Ferritin: Ferritin-li 69.2 28 0.0006 22.4 7.4 59 13-73 80-138 (142)
70 cd07657 F-BAR_Fes_Fer The F-BA 69.0 21 0.00046 26.5 6.0 28 46-73 21-48 (237)
71 PRK10635 bacterioferritin; Pro 67.6 39 0.00084 23.5 7.1 60 11-72 80-139 (158)
72 cd07672 F-BAR_PSTPIP2 The F-BA 67.4 25 0.00055 26.2 6.2 33 46-78 21-54 (240)
73 cd07671 F-BAR_PSTPIP1 The F-BA 58.8 40 0.00086 25.2 5.9 33 47-79 22-54 (242)
74 PF10097 DUF2335: Predicted me 57.4 33 0.00072 19.3 4.1 29 45-73 12-40 (50)
75 COG4445 MiaE Hydroxylase for s 56.7 72 0.0016 23.0 7.1 64 17-86 32-95 (203)
76 cd07658 F-BAR_NOSTRIN The F-BA 56.3 53 0.0011 24.3 6.2 28 46-73 21-48 (239)
77 cd07678 F-BAR_FCHSD1 The F-BAR 55.8 64 0.0014 24.6 6.6 45 34-78 9-53 (263)
78 PF11553 DUF3231: Protein of u 53.6 71 0.0015 22.0 7.0 41 46-86 123-163 (166)
79 PF08463 EcoEI_R_C: EcoEI R pr 52.7 70 0.0015 21.8 6.0 68 48-117 92-161 (164)
80 cd07681 F-BAR_PACSIN3 The F-BA 50.4 53 0.0011 24.9 5.4 50 47-103 22-71 (258)
81 PRK13456 DNA protection protei 50.2 96 0.0021 22.5 7.5 57 13-72 107-163 (186)
82 cd07655 F-BAR_PACSIN The F-BAR 48.9 1.1E+02 0.0024 22.8 8.4 33 46-78 21-53 (258)
83 cd07650 F-BAR_Syp1p_like The F 47.1 77 0.0017 23.3 5.8 28 48-75 23-50 (228)
84 cd01044 Ferritin_CCC1_N Ferrit 45.4 85 0.0018 20.5 6.6 46 16-72 79-124 (125)
85 cd01050 Acyl_ACP_Desat Acyl AC 45.0 1.5E+02 0.0032 23.1 8.0 108 8-117 54-171 (297)
86 PRK13654 magnesium-protoporphy 44.8 1.6E+02 0.0035 23.5 9.0 97 13-112 83-179 (355)
87 PRK07209 ribonucleotide-diphos 44.8 1.2E+02 0.0027 23.9 7.0 80 27-111 214-295 (369)
88 TIGR00754 bfr bacterioferritin 44.1 1E+02 0.0022 20.9 7.3 59 12-72 81-139 (157)
89 COG2833 Uncharacterized protei 44.0 1.4E+02 0.0031 22.7 7.6 70 13-87 75-144 (268)
90 CHL00185 ycf59 magnesium-proto 43.9 1.6E+02 0.0036 23.3 9.4 100 13-115 79-178 (351)
91 PRK13966 nrdF2 ribonucleotide- 42.2 91 0.002 24.2 5.7 64 45-113 182-246 (324)
92 PRK10304 ferritin; Provisional 41.4 1.2E+02 0.0026 21.1 7.6 61 13-75 82-145 (165)
93 cd07656 F-BAR_srGAP The F-BAR 38.9 1.6E+02 0.0035 21.9 9.0 33 45-77 20-52 (241)
94 cd01047 ACSF Aerobic Cyclase S 38.9 1.9E+02 0.0042 22.7 8.8 98 11-111 61-158 (323)
95 cd07653 F-BAR_CIP4-like The F- 37.6 1.6E+02 0.0035 21.5 8.8 34 45-78 20-53 (251)
96 PF00023 Ank: Ankyrin repeat H 37.5 34 0.00075 16.6 1.9 18 64-81 14-31 (33)
97 cd07680 F-BAR_PACSIN1 The F-BA 36.9 1.5E+02 0.0032 22.5 6.0 32 46-77 21-52 (258)
98 PF10239 DUF2465: Protein of u 36.8 19 0.00042 28.1 1.3 23 71-93 291-313 (318)
99 COG2996 Predicted RNA-bindinin 34.0 45 0.00098 25.7 2.8 46 58-103 221-268 (287)
100 PLN02508 magnesium-protoporphy 33.5 2.5E+02 0.0054 22.4 7.2 95 13-110 79-173 (357)
101 TIGR02029 AcsF magnesium-proto 32.9 2.5E+02 0.0054 22.2 9.2 97 13-112 73-169 (337)
102 KOG2297|consensus 31.8 2.2E+02 0.0049 22.7 6.3 80 34-115 228-321 (412)
103 COG4902 Uncharacterized protei 30.4 2E+02 0.0043 20.3 8.6 61 6-75 42-102 (189)
104 PF13606 Ank_3: Ankyrin repeat 29.3 49 0.0011 16.1 1.6 14 65-78 15-28 (30)
105 COG0521 MoaB Molybdopterin bio 29.2 38 0.00082 24.1 1.6 30 32-64 86-116 (169)
106 PF07830 PP2C_C: Protein serin 28.6 1.2E+02 0.0025 19.0 3.6 34 78-118 5-38 (81)
107 cd01048 Ferritin_like_AB2 Unch 28.4 1.8E+02 0.004 19.3 6.7 55 11-70 80-134 (135)
108 PF06744 DUF1215: Protein of u 27.3 1.8E+02 0.004 19.0 7.4 91 11-101 28-122 (125)
109 PRK09614 nrdF ribonucleotide-d 27.2 2.9E+02 0.0063 21.2 6.6 65 45-113 183-247 (324)
110 PF08988 DUF1895: Protein of u 26.4 1.3E+02 0.0028 18.1 3.4 46 51-103 13-58 (68)
111 PF13041 PPR_2: PPR repeat fam 26.2 83 0.0018 16.7 2.4 22 59-80 17-38 (50)
112 PF11640 TAN: Telomere-length 24.9 1.8E+02 0.0038 19.8 4.4 60 45-109 5-64 (155)
113 PLN02492 ribonucleoside-diphos 24.7 3.2E+02 0.0069 21.1 6.2 54 45-112 181-237 (324)
114 TIGR00756 PPR pentatricopeptid 24.5 89 0.0019 14.4 2.5 20 60-79 15-34 (35)
115 PF12981 DUF3865: Domain of Un 23.3 3E+02 0.0065 20.6 5.4 85 31-118 54-156 (231)
116 PF11583 AurF: P-aminobenzoate 23.3 3.3E+02 0.0071 20.5 7.5 30 46-75 111-140 (304)
117 PF05504 Spore_GerAC: Spore ge 22.8 2.5E+02 0.0054 18.9 6.3 46 12-62 96-141 (171)
118 PF12122 DUF3582: Protein of u 22.6 70 0.0015 20.7 1.8 21 62-82 11-31 (101)
119 TIGR02887 spore_ger_x_C germin 22.4 3.3E+02 0.0071 21.1 5.9 45 12-62 297-341 (371)
120 PRK13965 ribonucleotide-diphos 20.6 3.5E+02 0.0075 21.1 5.7 80 26-113 173-257 (335)
121 PTZ00211 ribonucleoside-diphos 20.2 4.2E+02 0.009 20.5 6.9 75 26-112 172-248 (330)
122 PF05974 DUF892: Domain of unk 20.1 3E+02 0.0066 18.9 6.5 53 17-71 98-150 (159)
No 1
>PRK15022 ferritin-like protein; Provisional
Probab=100.00 E-value=5.8e-38 Score=221.43 Aligned_cols=106 Identities=21% Similarity=0.375 Sum_probs=102.2
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCCCCcC
Q psy12315 10 FHAETEEKINKQINLELYASYVYLSMSAHFDRDVVALPGISKYFKHASDEESEHAHKLIKYLNKRGGTLKLVDVKAPARQ 89 (120)
Q Consensus 10 ~~~~~~~~Ln~qi~~El~as~~Yl~~a~~f~~~~~~l~g~a~~f~~~s~eE~~hA~~li~yi~~rGg~v~~~~i~~p~~~ 89 (120)
.+++++++||+|||.|++|||+|++||+||+ +.+|||||+||+.+|.|||+||++|++|+++|||+|.+++|++|. .
T Consensus 2 ~~~~~~~~LN~QIn~E~~aSy~YLsMa~~~~--~~~L~GfA~ff~~qa~EEreHA~k~~~yl~~rGg~v~l~~I~~P~-~ 78 (167)
T PRK15022 2 ATAGMLLKLNSQMNLEFYASNLYLHLSEWCS--EQSLNGTATFLRAQAQSNVTQMMRMFNFMKSAGATPIVKAIDVPG-E 78 (167)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCChhHHHHHHHHHHHHHHHHHHHHHHHHHcCCceeeCCCCCCc-c
Confidence 5789999999999999999999999999998 679999999999999999999999999999999999999999995 5
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12315 90 EWGTTEEAFSHALQLEKDVNQVIIYFFTS 118 (120)
Q Consensus 90 ~~~~~~~~l~~aL~~Ek~v~~~l~~l~~~ 118 (120)
+|+|+.++|+.+|++|+.||++|++|++.
T Consensus 79 ~~~s~~e~fe~al~hEk~vt~~I~~L~~~ 107 (167)
T PRK15022 79 KLNSLEELFQKTLEEYEQRSSTLAQLADE 107 (167)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999874
No 2
>cd00904 Ferritin Ferritin iron storage proteins. Ferritins are the primary iron storage proteins of most living organisms and members of a broad superfamily of ferritin-like diiron-carboxylate proteins. The iron-free (apoferritin) ferritin molecule is a protein shell composed of 24 protein chains arranged in 432 symmetry. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the dinuclear ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite; the protein shell can hold up to 4500 iron atoms. In vertebrates, two types of chains (subunits) have been characterized, H or M (fast) and L (slow), which differ in rates of iron uptake and mineralization. Bacterial non-heme ferritins are composed only of H chains. Fe(II) oxidation in the H/M subunits take place initially at the ferroxidase center, a carboxylate-bridged diiron center, located within the subunit four-helix bundle. In a complementary rol
Probab=100.00 E-value=1.2e-35 Score=208.65 Aligned_cols=108 Identities=49% Similarity=0.813 Sum_probs=103.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCCCCcCc
Q psy12315 11 HAETEEKINKQINLELYASYVYLSMSAHFDRDVVALPGISKYFKHASDEESEHAHKLIKYLNKRGGTLKLVDVKAPARQE 90 (120)
Q Consensus 11 ~~~~~~~Ln~qi~~El~as~~Yl~~a~~f~~~~~~l~g~a~~f~~~s~eE~~hA~~li~yi~~rGg~v~~~~i~~p~~~~ 90 (120)
+++|+++||+||+.|++||++|++||+||++++++|||||+||+.+|+|||+||++|++||++|||+|++++|++|...+
T Consensus 1 ~~~~~~~Ln~qi~~El~as~~Yl~ma~~~~~~~~~l~g~a~~f~~~s~eE~~HA~~l~~yi~~rgg~~~l~~i~~~~~~~ 80 (160)
T cd00904 1 SEKVEAAVNRQLNLELYASYTYLSMATYFDRDDVALKGVAHFFKEQAQEEREHAEKFYKYQNERGGRVELQDIEKPPSDE 80 (160)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHCCCccccCcCCCCcccc
Confidence 57899999999999999999999999999988999999999999999999999999999999999999999999996558
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12315 91 WGTTEEAFSHALQLEKDVNQVIIYFFTS 118 (120)
Q Consensus 91 ~~~~~~~l~~aL~~Ek~v~~~l~~l~~~ 118 (120)
|+++.++|+.+|++|+.+++.|++|++.
T Consensus 81 ~~~~~e~~e~al~~Ek~v~~~i~~l~~~ 108 (160)
T cd00904 81 WGGTLDAMEAALKLEKFVNQALLDLHEL 108 (160)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999874
No 3
>PRK10304 ferritin; Provisional
Probab=100.00 E-value=2.4e-35 Score=208.18 Aligned_cols=107 Identities=29% Similarity=0.489 Sum_probs=102.5
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCCCCc
Q psy12315 9 NFHAETEEKINKQINLELYASYVYLSMSAHFDRDVVALPGISKYFKHASDEESEHAHKLIKYLNKRGGTLKLVDVKAPAR 88 (120)
Q Consensus 9 ~~~~~~~~~Ln~qi~~El~as~~Yl~~a~~f~~~~~~l~g~a~~f~~~s~eE~~hA~~li~yi~~rGg~v~~~~i~~p~~ 88 (120)
+++++++.+||+||+.||+||++|++||.||+ ++||||||+||+.+|.||++||++|++||++|||.|.+++|++|.
T Consensus 1 ~~~~~i~~~Ln~qin~El~As~~Yl~ma~~~~--~~gl~g~A~~f~~qs~EE~~HA~kl~~~i~~rgg~~~~~~i~~p~- 77 (165)
T PRK10304 1 MLKPEMIEKLNEQMNLELYSSLLYQQMSAWCS--YHTFEGAAAFLRRHAQEEMTHMQRLFDYLTDTGNLPRINTVESPF- 77 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hCCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeeeCCCCCCc-
Confidence 36899999999999999999999999999999 789999999999999999999999999999999999999999885
Q ss_pred CccCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12315 89 QEWGTTEEAFSHALQLEKDVNQVIIYFFTS 118 (120)
Q Consensus 89 ~~~~~~~~~l~~aL~~Ek~v~~~l~~l~~~ 118 (120)
.+|+|+.++|+.+|++|+.+|..|+++++.
T Consensus 78 ~~~~s~~e~~~~~l~~E~~vt~~i~~l~~~ 107 (165)
T PRK10304 78 AEYSSLDELFQETYKHEQLITQKINELAHA 107 (165)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 499999999999999999999999999864
No 4
>COG1528 Ftn Ferritin-like protein [Inorganic ion transport and metabolism]
Probab=100.00 E-value=9.4e-34 Score=198.20 Aligned_cols=106 Identities=35% Similarity=0.579 Sum_probs=101.9
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCCCCcC
Q psy12315 10 FHAETEEKINKQINLELYASYVYLSMSAHFDRDVVALPGISKYFKHASDEESEHAHKLIKYLNKRGGTLKLVDVKAPARQ 89 (120)
Q Consensus 10 ~~~~~~~~Ln~qi~~El~as~~Yl~~a~~f~~~~~~l~g~a~~f~~~s~eE~~hA~~li~yi~~rGg~v~~~~i~~p~~~ 89 (120)
.++++.++||+|+|.|++||++|++||+||+ +.+|||+|+||+.+|.||+.||++|++|++.||++|.++.|++|..
T Consensus 2 ls~~~~~~LN~Q~N~E~yas~lYl~maa~~~--~~~l~G~A~f~~~qa~EE~~H~~k~~~yl~~~g~~~~l~~I~~P~~- 78 (167)
T COG1528 2 LSEKMIELLNEQMNLEFYASNLYLQMAAWCS--SESLPGFAKFLRAQAQEELTHAMKLFNYLNERGARPELKAIEAPPN- 78 (167)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hcCChhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceecCcCCCcc-
Confidence 5789999999999999999999999999999 6799999999999999999999999999999999999999999965
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12315 90 EWGTTEEAFSHALQLEKDVNQVIIYFFTS 118 (120)
Q Consensus 90 ~~~~~~~~l~~aL~~Ek~v~~~l~~l~~~ 118 (120)
+|+|+.++|+.+|++|+.||+.|++|.+.
T Consensus 79 ~~~s~~e~f~~tlehEq~vt~~I~~L~~~ 107 (167)
T COG1528 79 KFSSLKELFEKTLEHEQKVTSSINELAEV 107 (167)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999864
No 5
>cd01056 Euk_Ferritin eukaryotic ferritins. Eukaryotic Ferritin (Euk_Ferritin) domain. Ferritins are the primary iron storage proteins of most living organisms and members of a broad superfamily of ferritin-like diiron-carboxylate proteins. The iron-free (apoferritin) ferritin molecule is a protein shell composed of 24 protein chains arranged in 432 symmetry. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the dinuclear ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite; the protein shell can hold up to 4500 iron atoms. In vertebrates, two types of chains (subunits) have been characterized, H or M (fast) and L (slow), which differ in rates of iron uptake and mineralization. Fe(II) oxidation in the H/M subunits take place initially at the ferroxidase center, a carboxylate-bridged diiron center, located within the subunit four-helix bundle. In a complementary role, negatively charged r
Probab=100.00 E-value=2e-33 Score=197.35 Aligned_cols=108 Identities=60% Similarity=0.894 Sum_probs=102.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCCCCcCc
Q psy12315 11 HAETEEKINKQINLELYASYVYLSMSAHFDRDVVALPGISKYFKHASDEESEHAHKLIKYLNKRGGTLKLVDVKAPARQE 90 (120)
Q Consensus 11 ~~~~~~~Ln~qi~~El~as~~Yl~~a~~f~~~~~~l~g~a~~f~~~s~eE~~hA~~li~yi~~rGg~v~~~~i~~p~~~~ 90 (120)
+++|+++||+||+.||+||++|++||.||+..++|+|||++||+.+|.|||+||++|++||++|||+|++++|++|....
T Consensus 1 ~~~i~~~Ln~~i~~El~as~~Yl~~a~~~~~~~~~l~g~a~~f~~~a~eE~~HA~~l~~~i~~rgg~~~~~~i~~~~~~~ 80 (161)
T cd01056 1 HEECEAALNKQINLELNASYVYLSMAAYFDRDDVALPGFAKFFRKLSDEEREHAEKLIKYQNKRGGRVVLQDIKKPEKDE 80 (161)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeecCCCCCCCCcc
Confidence 46899999999999999999999999999965559999999999999999999999999999999999999999996358
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12315 91 WGTTEEAFSHALQLEKDVNQVIIYFFTS 118 (120)
Q Consensus 91 ~~~~~~~l~~aL~~Ek~v~~~l~~l~~~ 118 (120)
|+++.++|+.+|++|+.+++.|+++++.
T Consensus 81 ~~~~~e~l~~al~~E~~vt~~~~~l~~~ 108 (161)
T cd01056 81 WGSGLEALELALDLEKLVNQSLLDLHKL 108 (161)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999874
No 6
>KOG2332|consensus
Probab=100.00 E-value=2.5e-34 Score=203.20 Aligned_cols=115 Identities=56% Similarity=0.824 Sum_probs=112.9
Q ss_pred CcccccccHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccc
Q psy12315 4 SQVRQNFHAETEEKINKQINLELYASYVYLSMSAHFDRDVVALPGISKYFKHASDEESEHAHKLIKYLNKRGGTLKLVDV 83 (120)
Q Consensus 4 s~~~~~~~~~~~~~Ln~qi~~El~as~~Yl~~a~~f~~~~~~l~g~a~~f~~~s~eE~~hA~~li~yi~~rGg~v~~~~i 83 (120)
+++|++++.++..++|.||+.|+++||.|++||+||++++++++||++||.++|.+||+||++|++|+++|||.|++++|
T Consensus 7 ~~~r~~~~~~~~~~in~~in~el~~sy~Ylsma~yf~rd~v~l~g~~~ff~~~s~eereha~klm~~~n~rgg~i~l~~i 86 (178)
T KOG2332|consen 7 SEARQNYHDEAEAAINSQINLELNASYVYLSMAAYFDRDDVALKGFAKFFLKQSQEEREHAEKLMKTQNMRGGRIELQDI 86 (178)
T ss_pred HHHhhcchhhccchhhhhccchhccchhhhhhhhccCccccchhhhhhhhhhhhhhhhhhHHHHHHHHHHhCCccccccc
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcCccCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12315 84 KAPARQEWGTTEEAFSHALQLEKDVNQVIIYFFTS 118 (120)
Q Consensus 84 ~~p~~~~~~~~~~~l~~aL~~Ek~v~~~l~~l~~~ 118 (120)
.+|..++|++.+.+++.||.+|+.|+++|.+||+.
T Consensus 87 ~~P~~~ew~~~l~ale~al~LEk~vn~sLl~Lh~l 121 (178)
T KOG2332|consen 87 KKPELDEWGKGLEALEAALHLEKNVNQSLLELHSL 121 (178)
T ss_pred cccccchhHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988999999999999999999999999999974
No 7
>cd01055 Nonheme_Ferritin nonheme-containing ferritins. Nonheme Ferritin domain, found in archaea and bacteria, is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The ferritin protein shell is composed of 24 protein subunits arranged in 432 symmetry. Each protein subunit, a four-helix bundle with a fifth short terminal helix, contains a dinuclear ferroxidase center (H type). Unique to this group of proteins is a third metal site in the ferroxidase center. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite.
Probab=99.96 E-value=8.7e-29 Score=172.20 Aligned_cols=105 Identities=41% Similarity=0.696 Sum_probs=100.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCCCCcCc
Q psy12315 11 HAETEEKINKQINLELYASYVYLSMSAHFDRDVVALPGISKYFKHASDEESEHAHKLIKYLNKRGGTLKLVDVKAPARQE 90 (120)
Q Consensus 11 ~~~~~~~Ln~qi~~El~as~~Yl~~a~~f~~~~~~l~g~a~~f~~~s~eE~~hA~~li~yi~~rGg~v~~~~i~~p~~~~ 90 (120)
+++|+++||++++.|+.|+++|++||.||+ ++++|||++||+..|.+|++||+++++||++|||.|+++++++|.. +
T Consensus 1 ~~~~~~~Ln~~~~~El~A~~~Yl~~a~~~~--~~~~~~~a~~f~~~a~eE~~HA~~l~~~i~~~gg~~~~~~~~~~~~-~ 77 (156)
T cd01055 1 SEKLEKALNEQINLELYSSYLYLAMAAWFD--SKGLDGFANFFRVQAQEEREHAMKFFDYLNDRGGRVELPAIEAPPS-E 77 (156)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hcCChhHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeeCCCCCCCCc-c
Confidence 578999999999999999999999999999 5699999999999999999999999999999999999999999854 8
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12315 91 WGTTEEAFSHALQLEKDVNQVIIYFFTS 118 (120)
Q Consensus 91 ~~~~~~~l~~aL~~Ek~v~~~l~~l~~~ 118 (120)
|+++.++|+.+|++|+.++..+.++++.
T Consensus 78 ~~~~~~~l~~al~~E~~~~~~~~~l~~~ 105 (156)
T cd01055 78 FESLLEVFEAALEHEQKVTESINNLVDL 105 (156)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999875
No 8
>PRK10635 bacterioferritin; Provisional
Probab=99.93 E-value=5.2e-25 Score=154.54 Aligned_cols=104 Identities=22% Similarity=0.150 Sum_probs=99.1
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCCCCcC
Q psy12315 10 FHAETEEKINKQINLELYASYVYLSMSAHFDRDVVALPGISKYFKHASDEESEHAHKLIKYLNKRGGTLKLVDVKAPARQ 89 (120)
Q Consensus 10 ~~~~~~~~Ln~qi~~El~as~~Yl~~a~~f~~~~~~l~g~a~~f~~~s~eE~~hA~~li~yi~~rGg~v~~~~i~~p~~~ 89 (120)
.++++++.||++++.|+.|+++|+.+|.+|+ +||+++++.+|+.+|.||++||.+|++||+++||.|+++++++|..
T Consensus 3 ~~~~vi~~LN~~L~~El~Ai~QY~~ha~~~~--~~G~~~la~~~~~ea~eEm~HA~~l~eRIl~LgG~P~~~~~~~~~~- 79 (158)
T PRK10635 3 GDVKIINYLNKLLGNELVAINQYFLHARMFK--NWGLMRLNDVEYHESIDEMKHADKYIERILFLEGIPNLQDLGKLNI- 79 (158)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCC-
Confidence 3789999999999999999999999999999 9999999999999999999999999999999999999999988854
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12315 90 EWGTTEEAFSHALQLEKDVNQVIIYFFT 117 (120)
Q Consensus 90 ~~~~~~~~l~~aL~~Ek~v~~~l~~l~~ 117 (120)
..++.++|+.++++|+.++..|+++.+
T Consensus 80 -g~~v~eml~~dl~~E~~ai~~y~e~i~ 106 (158)
T PRK10635 80 -GEDVEEMLRSDLRLELEGAKDLREAIA 106 (158)
T ss_pred -CCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 479999999999999999999999875
No 9
>TIGR00754 bfr bacterioferritin. Bacterioferritin is a homomultimer most species. In Neisseria gonorrhoeae, Synechocystis PCC6803, Magnetospirillum magnetotacticum, and Pseudomonas aeruginosa, two types of subunit are found in a heteromultimeric complex, with each species having one member of each type. At present, both types of subunit are including in this single model.
Probab=99.91 E-value=4.1e-23 Score=144.26 Aligned_cols=103 Identities=23% Similarity=0.193 Sum_probs=98.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCCCCcCc
Q psy12315 11 HAETEEKINKQINLELYASYVYLSMSAHFDRDVVALPGISKYFKHASDEESEHAHKLIKYLNKRGGTLKLVDVKAPARQE 90 (120)
Q Consensus 11 ~~~~~~~Ln~qi~~El~as~~Yl~~a~~f~~~~~~l~g~a~~f~~~s~eE~~hA~~li~yi~~rGg~v~~~~i~~p~~~~ 90 (120)
+++++++||++++.|+.|+++|+.++.||. +++++|++.||..++.||++||.+|++||+++||.|.+++++.|.. .
T Consensus 4 ~~~~~~~LN~~l~~E~~a~~~Y~~~~~~~~--~~~~~g~a~~~~~~a~EE~~Ha~~laeri~~lGg~p~~~~i~~~~~-~ 80 (157)
T TIGR00754 4 DPDVIQHLNKQLTNELTAINQYFLHARMQK--NWGLKELADHEYHESIDEMKHADEIIERILFLEGLPNLQDLGKLRI-G 80 (157)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCcCCCCCC-C
Confidence 679999999999999999999999999997 8999999999999999999999999999999999999999998854 3
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12315 91 WGTTEEAFSHALQLEKDVNQVIIYFFT 117 (120)
Q Consensus 91 ~~~~~~~l~~aL~~Ek~v~~~l~~l~~ 117 (120)
.++.++|+.++++|+.++..++++++
T Consensus 81 -~~~~e~l~~~l~~E~~~~~~~~e~i~ 106 (157)
T TIGR00754 81 -ETVREMLEADLALELDVLNRLKEAIA 106 (157)
T ss_pred -CCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999975
No 10
>cd00907 Bacterioferritin Bacterioferritin, ferritin-like diiron-binding domain. Bacterioferritins, also known as cytochrome b1, are members of a broad superfamily of ferritin-like diiron-carboxylate proteins. Similar to ferritin in architecture, Bfr forms an oligomer of 24 subunits that assembles to form a hollow sphere with 432 symmetry. Up to 12 heme cofactor groups (iron protoporphyrin IX or coproporphyrin III) are bound between dimer pairs. The role of the heme is unknown, although it may be involved in mediating iron-core reduction and iron release. Each subunit is composed of a four-helix bundle which carries a diiron ferroxidase center; it is here that initial oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical products, and storage of ferric-hydroxyphosphate at the core. Some bacterioferritins are composed of two subunit types, one conferring heme-binding ability (alpha) and the other (beta) best
Probab=99.85 E-value=2.5e-20 Score=128.87 Aligned_cols=103 Identities=22% Similarity=0.201 Sum_probs=96.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCCCCcCc
Q psy12315 11 HAETEEKINKQINLELYASYVYLSMSAHFDRDVVALPGISKYFKHASDEESEHAHKLIKYLNKRGGTLKLVDVKAPARQE 90 (120)
Q Consensus 11 ~~~~~~~Ln~qi~~El~as~~Yl~~a~~f~~~~~~l~g~a~~f~~~s~eE~~hA~~li~yi~~rGg~v~~~~i~~p~~~~ 90 (120)
++++++.||++++.|+.++++|+.++.+|+ +.+++|+++||+.++.+|++||+.+.+|+..+||.|.+.+++.|..
T Consensus 3 ~~~~~~~Ln~~l~~E~~a~~~Y~~~a~~~~--~~~~~~~~~~f~~~a~ee~~Ha~~lae~i~~lGg~p~~~~~~~~~~-- 78 (153)
T cd00907 3 DPKVIEALNKALTGELTAINQYFLHARMLE--DWGLEKLAERFRKESIEEMKHADKLIERILFLEGLPNLQRLGKLRI-- 78 (153)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcCCCCCc--
Confidence 678999999999999999999999999998 7899999999999999999999999999999999999988887743
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12315 91 WGTTEEAFSHALQLEKDVNQVIIYFFT 117 (120)
Q Consensus 91 ~~~~~~~l~~aL~~Ek~v~~~l~~l~~ 117 (120)
..++.++++.+++.|+.++..++++++
T Consensus 79 ~~~~~~~l~~~l~~E~~~~~~y~~~~~ 105 (153)
T cd00907 79 GEDVPEMLENDLALEYEAIAALNEAIA 105 (153)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 257899999999999999999999875
No 11
>cd01041 Rubrerythrin Rubrerythrin, ferritin-like diiron-binding domain. Rubrerythrin domain is a nonheme iron binding domain found in many air-sensitive bacteria and archaea and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The homodimeric rubrerythrin protein contains a binuclear metal center located within a four helix bundle. Many, but not all, rubrerythrin proteins have a second domain with a rubredoxin-like hexacoordinated iron center. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system but its function is still poorly understood.
Probab=99.84 E-value=4e-20 Score=126.11 Aligned_cols=97 Identities=23% Similarity=0.236 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccccCcCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCCCCcCccCC
Q psy12315 14 TEEKINKQINLELYASYVYLSMSAHFDRDVVALPGISKYFKHASDEESEHAHKLIKYLNKRGGTLKLVDVKAPARQEWGT 93 (120)
Q Consensus 14 ~~~~Ln~qi~~El~as~~Yl~~a~~f~~~~~~l~g~a~~f~~~s~eE~~hA~~li~yi~~rGg~v~~~~i~~p~~~~~~~ 93 (120)
..+.||+.+..|+.++++|++||.|++ +.|++|+++||+.+|.+|+.||.++++|++++||.|. .|.. .|++
T Consensus 2 t~~~L~~a~~~E~~a~~~Y~~~a~~a~--~~g~~~~a~~f~~~a~eE~~HA~~~~~~l~~l~g~~~-----~~~~-~~~~ 73 (134)
T cd01041 2 TEKNLLAAFAGESQARNRYTYFAEKAR--KEGYEQIARLFRATAENEKEHAKGHFKLLKGLGGGDT-----GPPI-GIGD 73 (134)
T ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc-----CCCC-Ccch
Confidence 457899999999999999999999999 6799999999999999999999999999999999999 3423 7999
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHh
Q psy12315 94 TEEAFSHALQLEKD-VNQVIIYFFTS 118 (120)
Q Consensus 94 ~~~~l~~aL~~Ek~-v~~~l~~l~~~ 118 (120)
+.++|+.++++|+. ++..|.++++.
T Consensus 74 ~~~~l~~~~~~E~~e~~~~y~~~~~~ 99 (134)
T cd01041 74 TLENLKAAIAGETYEYTEMYPEFAEV 99 (134)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 99999999999995 88999998764
No 12
>PF00210 Ferritin: Ferritin-like domain; InterPro: IPR008331 Ferritin is one of the major non-haem iron storage proteins in animals, plants, and microorganisms []. It consists of a mineral core of hydrated ferric oxide, and a multi-subunit protein shell that encloses the former and assures its solubility in an aqueous environment. In animals the protein is mainly cytoplasmic and there are generally two or more genes that encode closely related subunits - in mammals there are two subunits which are known as H(eavy) and L(ight). In plants ferritin is found in the chloroplast []. This entry represents the main structural domain of ferritin. The domain is also found in other ferritin-like proteins such as members of the DNA protection during starvation (DPS) family and bacterioferritins.; GO: 0008199 ferric iron binding, 0006879 cellular iron ion homeostasis; PDB: 1N1Q_C 4DYU_E 2YJJ_D 2YJK_B 2VXX_B 3FVB_A 2WLU_A 2XGW_A 2WLA_A 1Z4A_D ....
Probab=99.83 E-value=8.6e-20 Score=123.28 Aligned_cols=100 Identities=34% Similarity=0.515 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccCcCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccc-----cCCCCcC
Q psy12315 15 EEKINKQINLELYASYVYLSMSAHFDRDVVALPGISKYFKHASDEESEHAHKLIKYLNKRGGTLKLVD-----VKAPARQ 89 (120)
Q Consensus 15 ~~~Ln~qi~~El~as~~Yl~~a~~f~~~~~~l~g~a~~f~~~s~eE~~hA~~li~yi~~rGg~v~~~~-----i~~p~~~ 89 (120)
+++||++++.|+.+++.|+.++.+|+ +.+++|+++||+++++++++|++++++|+..|||.|..+. ++.|.
T Consensus 1 i~~Ln~~l~~e~~~~~~y~~~~~~~~--~~~~~~l~~~~~~~a~e~~~h~~~l~e~i~~lgg~p~~~~~~~~~~~~~~-- 76 (142)
T PF00210_consen 1 IEALNEQLALELQASQQYLNMHWNFD--GPNFPGLAKFFQDQAEEEREHADELAERILMLGGKPSGSPVEIPEIPKPP-- 76 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-SSTSHHHHHHHHSSS--
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhc--CCCchhhHHHhHHHHHHHHHHHHHHHHHHhcCCCCCCCcHHHhhhhhccc--
Confidence 57899999999999999999999999 8899999999999999999999999999999999666544 55563
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12315 90 EWGTTEEAFSHALQLEKDVNQVIIYFFTS 118 (120)
Q Consensus 90 ~~~~~~~~l~~aL~~Ek~v~~~l~~l~~~ 118 (120)
.|+++.++++.+++.|+.++..+.++.+.
T Consensus 77 ~~~~~~~~l~~~l~~e~~~~~~~~~l~~~ 105 (142)
T PF00210_consen 77 EWTDPREALEAALEDEKEIIEEYRELIKL 105 (142)
T ss_dssp SSSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48899999999999999999999999874
No 13
>COG2193 Bfr Bacterioferritin (cytochrome b1) [Inorganic ion transport and metabolism]
Probab=99.81 E-value=1.4e-18 Score=119.52 Aligned_cols=103 Identities=23% Similarity=0.208 Sum_probs=97.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCCCCcCc
Q psy12315 11 HAETEEKINKQINLELYASYVYLSMSAHFDRDVVALPGISKYFKHASDEESEHAHKLIKYLNKRGGTLKLVDVKAPARQE 90 (120)
Q Consensus 11 ~~~~~~~Ln~qi~~El~as~~Yl~~a~~f~~~~~~l~g~a~~f~~~s~eE~~hA~~li~yi~~rGg~v~~~~i~~p~~~~ 90 (120)
.+++++.||+.+..||.|.++|+.+|..|+ +||+..++++|+++|.+|+.||++++++|++.+|.|+++++++-. -
T Consensus 4 ~~~Vi~~LN~~L~~EL~ainQYflHsrM~~--~WG~~~L~~~~~~esi~Em~HAd~lieRIlfLeG~Pnlq~~~~l~--i 79 (157)
T COG2193 4 DPKVIRLLNEALGLELAAINQYFLHSRMYK--NWGLTKLAAHEYHESIEEMKHADQLIERILFLEGLPNLQDLGKLR--I 79 (157)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CcChHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcccccccc--c
Confidence 478999999999999999999999999999 999999999999999999999999999999999999999999863 4
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12315 91 WGTTEEAFSHALQLEKDVNQVIIYFFT 117 (120)
Q Consensus 91 ~~~~~~~l~~aL~~Ek~v~~~l~~l~~ 117 (120)
..++.++++.+|.+|..+...+.+...
T Consensus 80 G~tv~E~L~~DL~~E~~a~~~lk~~i~ 106 (157)
T COG2193 80 GETVKEMLEADLALEYEARDALKEAIA 106 (157)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 779999999999999999999887654
No 14
>cd01052 DPSL DPS-like protein, ferritin-like diiron-binding domain. DPSL (DPS-like). DPSL is a phylogenetically distinct class within the ferritin-like superfamily, and similar in many ways to the DPS (DNA Protecting protein under Starved conditions) proteins. Like DPS, these proteins are expressed in response to oxidative stress, form dodecameric cage-like particles, preferentially utilize hydrogen peroxide in the controlled oxidation of iron, and possess a short N-terminal extension implicated in stabilizing cellular DNA. This domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. These proteins are distantly related to bacterial ferritins which assemble 24 monomers, each of which have a four-helix bundle with a fifth shorter helix at the C terminus and a diiron (ferroxidase) center. Ferritins contain a center where oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical
Probab=99.79 E-value=4.3e-18 Score=117.08 Aligned_cols=105 Identities=22% Similarity=0.169 Sum_probs=95.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccc-------
Q psy12315 11 HAETEEKINKQINLELYASYVYLSMSAHFDRDVVALPGISKYFKHASDEESEHAHKLIKYLNKRGGTLKLVDV------- 83 (120)
Q Consensus 11 ~~~~~~~Ln~qi~~El~as~~Yl~~a~~f~~~~~~l~g~a~~f~~~s~eE~~hA~~li~yi~~rGg~v~~~~i------- 83 (120)
.+++++.||++++.|+.++++|+.++.+++ +.++++++++|++++.+|++||+.+.+|++.+||.|..+..
T Consensus 4 ~~~~~~~Ln~~la~e~~~~~~y~~~~~~~~--g~~f~~l~~~~~~~~~ee~~Had~laEri~~lGg~p~~~~~~~~~~~~ 81 (148)
T cd01052 4 VDELIELLNKAFADEWLAYYYYTILAKHVK--GPEGEGIKEELEEAAEEELNHAELLAERIYELGGTPPRDPKDWYEISG 81 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChHHHHHHhc
Confidence 467899999999999999999999999999 88999999999999999999999999999999999997553
Q ss_pred ---CCCCcCccCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12315 84 ---KAPARQEWGTTEEAFSHALQLEKDVNQVIIYFFTS 118 (120)
Q Consensus 84 ---~~p~~~~~~~~~~~l~~aL~~Ek~v~~~l~~l~~~ 118 (120)
+.| ...+.++.++|+.+++.|+.++..++++.+.
T Consensus 82 ~~~~~~-~~~~~~~~~~l~~~~~~e~~~i~~~~~~~~~ 118 (148)
T cd01052 82 CKCGYL-PPDPPDVKGILKVNLKAERCAIKVYKELCDM 118 (148)
T ss_pred ccccCC-CCCCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 2357789999999999999999999999864
No 15
>cd01046 Rubrerythrin_like rubrerythrin-like, diiron-binding domain. Rubrerythrin-like domain, similar to rubrerythrin, a nonheme iron binding domain found in many air-sensitive bacteria and archaea, and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system. The rubrerythrin protein has two domains, a binuclear metal center located within a four-helix bundle of the rubrerythrin domain, and a rubredoxin domain. The Rubrerythrin-like domains in this CD are singular domains (no C-terminus rubredoxin domain) and are phylogenetically distinct from rubrerythrin domains of rubrerythrin-rubredoxin proteins.
Probab=99.70 E-value=3.3e-16 Score=105.67 Aligned_cols=87 Identities=25% Similarity=0.271 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccccCcCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCCCCcCccCC
Q psy12315 14 TEEKINKQINLELYASYVYLSMSAHFDRDVVALPGISKYFKHASDEESEHAHKLIKYLNKRGGTLKLVDVKAPARQEWGT 93 (120)
Q Consensus 14 ~~~~Ln~qi~~El~as~~Yl~~a~~f~~~~~~l~g~a~~f~~~s~eE~~hA~~li~yi~~rGg~v~~~~i~~p~~~~~~~ 93 (120)
+++.||.+++.|+++++.|++||.|++ ..|++|+++||+.+|.+|+.||.++.+++ |+ |+ +|
T Consensus 2 ~~~~L~~a~~~E~~a~~~Y~~~a~~a~--~eG~~~~A~~f~~~a~eE~~HA~~~~~~l---~~------i~-------~~ 63 (123)
T cd01046 2 LEEDLEANFKGETTEVGMYLAMARVAQ--REGYPEVAEELKRIAMEEAEHAARFAELL---GK------VS-------ED 63 (123)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHHHHHHHHHHHHHH---hc------Cc-------cc
Confidence 578999999999999999999999999 67999999999999999999999999966 22 11 68
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12315 94 TEEAFSHALQLEKDVNQVIIYFFTS 118 (120)
Q Consensus 94 ~~~~l~~aL~~Ek~v~~~l~~l~~~ 118 (120)
+.++|+.++++|+.++..+.++.+.
T Consensus 64 ~~~~le~a~~~E~~~~~~~~~~~~~ 88 (123)
T cd01046 64 TKENLEMMLEGEAGANEGKKDAATE 88 (123)
T ss_pred HHHHHHHHHHhHHHHHHhHHHHHHH
Confidence 9999999999999999999888753
No 16
>PRK13456 DNA protection protein DPS; Provisional
Probab=99.55 E-value=1.9e-13 Score=97.67 Aligned_cols=105 Identities=18% Similarity=0.167 Sum_probs=95.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccC------
Q psy12315 11 HAETEEKINKQINLELYASYVYLSMSAHFDRDVVALPGISKYFKHASDEESEHAHKLIKYLNKRGGTLKLVDVK------ 84 (120)
Q Consensus 11 ~~~~~~~Ln~qi~~El~as~~Yl~~a~~f~~~~~~l~g~a~~f~~~s~eE~~hA~~li~yi~~rGg~v~~~~i~------ 84 (120)
.+++++.||+.+..|+.+.+.|..+++... ++.-++++.||...+.||+.||+.+.++|.+.||.|.+.+-+
T Consensus 18 ~~~li~lLn~AlA~E~~a~~~Y~~~a~~~~--G~~~e~V~e~le~a~~EEl~HA~~lAeRI~qLGG~P~~~p~~~~~ls~ 95 (186)
T PRK13456 18 VDKLVELLVKNAAAEFTTYYYYTILRAHLI--GLEGEGLKEIAEDARLEDRNHFEALVPRIYELGGKLPRDIREFHDISA 95 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChHHHhhhhc
Confidence 357899999999999999999999999999 888999999999999999999999999999999999987773
Q ss_pred -----CCCcCccCCHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy12315 85 -----APARQEWGTTEEAFSHALQLEKDVNQVIIYFFTSL 119 (120)
Q Consensus 85 -----~p~~~~~~~~~~~l~~aL~~Ek~v~~~l~~l~~~~ 119 (120)
.| .+++++.++++..|.-|+..+..++++.+-+
T Consensus 96 ~~~~~~p--~d~tdv~~mL~~~L~AEr~AI~~Y~eii~~~ 133 (186)
T PRK13456 96 CPDAYLP--ENPTDPKEILKVLLEAERCAIRTYTEICDMT 133 (186)
T ss_pred CccccCC--CCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 13 2467899999999999999999999998643
No 17
>cd07908 Mn_catalase_like Manganese catalase-like protein, ferritin-like diiron-binding domain. This uncharacterized bacterial protein family has a ferritin-like domain similar to that of the manganese catalase protein of Lactobacillus plantarum and the bll3758 protein of Bradyrhizobium japonicum. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio
Probab=99.12 E-value=3.6e-09 Score=73.43 Aligned_cols=106 Identities=15% Similarity=0.068 Sum_probs=88.3
Q ss_pred cHHHHHHHHHHHH---HHHHHHHHHHHHhhcccccCcCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCCC-
Q psy12315 11 HAETEEKINKQIN---LELYASYVYLSMSAHFDRDVVALPGISKYFKHASDEESEHAHKLIKYLNKRGGTLKLVDVKAP- 86 (120)
Q Consensus 11 ~~~~~~~Ln~qi~---~El~as~~Yl~~a~~f~~~~~~l~g~a~~f~~~s~eE~~hA~~li~yi~~rGg~v~~~~i~~p- 86 (120)
+++....|++++. .|+.++.+|+..+.... + +.+.+++.|...|.+|+.|+..+.+.+.++||.|.+......
T Consensus 11 ~~~~~~~~~~~~~g~~~E~~ai~~Y~y~~~~~~--~-~~~~~k~~f~~lA~eE~~H~~~l~~~i~~lgg~p~~~~~~~~~ 87 (154)
T cd07908 11 NPRYAELLLDDYAGTNSELTAISQYIYQHLISE--E-KYPEIAETFLGIAIVEMHHLEILGQLIVLLGGDPRYRSSSSDK 87 (154)
T ss_pred ChHHHHHHHHHhCCcchHHHHHHHHHHHHHHcc--C-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhcccc
Confidence 4567788888888 99999999999999887 4 679999999999999999999999999999999876433211
Q ss_pred ------C-cCccCCHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy12315 87 ------A-RQEWGTTEEAFSHALQLEKDVNQVIIYFFTSL 119 (120)
Q Consensus 87 ------~-~~~~~~~~~~l~~aL~~Ek~v~~~l~~l~~~~ 119 (120)
. .....++.++++.++..|+.....+.++.+.+
T Consensus 88 ~~~~~~~~~~~~~~~~~~L~~~~~~E~~ai~~Y~~~~~~~ 127 (154)
T cd07908 88 FTYWTGKYVNYGESIKEMLKLDIASEKAAIAKYKRQAETI 127 (154)
T ss_pred CCcCCccccCCccCHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 0 11345789999999999999999999887643
No 18
>cd00657 Ferritin_like Ferritin-like superfamily of diiron-containing four-helix-bundle proteins. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterioferritin, ferritin, rubrerythrin, aromatic and alkene monooxygenase hydroxylases (AAMH), ribonucleotide reductase R2 (RNRR2), acyl-ACP-desaturases (Acyl_ACP_Desat), manganese (Mn) catalases, demethoxyub
Probab=99.04 E-value=1.3e-08 Score=65.53 Aligned_cols=96 Identities=24% Similarity=0.235 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccccCcCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccc-----cCCCCcCcc
Q psy12315 17 KINKQINLELYASYVYLSMSAHFDRDVVALPGISKYFKHASDEESEHAHKLIKYLNKRGGTLKLVD-----VKAPARQEW 91 (120)
Q Consensus 17 ~Ln~qi~~El~as~~Yl~~a~~f~~~~~~l~g~a~~f~~~s~eE~~hA~~li~yi~~rGg~v~~~~-----i~~p~~~~~ 91 (120)
.|+..+..|..++..|..++..+. .+++..+|...+.+|+.|+..+.+++..+|+.|.... ...+ ....
T Consensus 2 ~L~~~~~~E~~a~~~y~~~~~~~~-----~~~~~~~~~~~a~~E~~H~~~l~~~~~~~g~~~~~~~~~~~~~~~~-~~~~ 75 (130)
T cd00657 2 LLNDALAGEYAAIIAYGQLAARAP-----DPDLKDELLEIADEERRHADALAERLRELGGTPPLPPAHLLAAYAL-PKTS 75 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHhccc-CCCc
Confidence 689999999999999999999887 5789999999999999999999999999999987654 1222 2356
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12315 92 GTTEEAFSHALQLEKDVNQVIIYFFTS 118 (120)
Q Consensus 92 ~~~~~~l~~aL~~Ek~v~~~l~~l~~~ 118 (120)
.++.+++..+...|......+..+.+.
T Consensus 76 ~~~~~~l~~~~~~E~~~~~~y~~~~~~ 102 (130)
T cd00657 76 DDPAEALRAALEVEARAIAAYRELIEQ 102 (130)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 788999999999999998888877654
No 19
>cd01043 DPS DPS protein, ferritin-like diiron-binding domain. DPS (DNA Protecting protein under Starved conditions) domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Some DPS proteins nonspecifically bind DNA, protecting it from cleavage caused by reactive oxygen species such as the hydroxyl radicals produced during oxidation of Fe(II) by hydrogen peroxide. These proteins assemble into dodecameric structures, some form DPS-DNA co-crystalline complexes, and possess iron and H2O2 detoxification capabilities. Expression of DPS is induced by oxidative or nutritional stress, including metal ion starvation. Members of the DPS family are homopolymers formed by 12 four-helix bundle subunits that assemble with 23 symmetry into a hollow shell. The DPS ferroxidase site is unusual in that it is not located in a four-helix bundle as in ferritin, but is shared by 2-fold symmetry-related subunits providing the iron ligands. Many DPS sequences (e.g., E. coli) disp
Probab=98.99 E-value=1.3e-08 Score=69.31 Aligned_cols=98 Identities=10% Similarity=0.023 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccccCcCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccc--------cCCCCc
Q psy12315 17 KINKQINLELYASYVYLSMSAHFDRDVVALPGISKYFKHASDEESEHAHKLIKYLNKRGGTLKLVD--------VKAPAR 88 (120)
Q Consensus 17 ~Ln~qi~~El~as~~Yl~~a~~f~~~~~~l~g~a~~f~~~s~eE~~hA~~li~yi~~rGg~v~~~~--------i~~p~~ 88 (120)
.||..+..++..+..|....-+.. +.++..+..+|.+.+.++++|+..++++|...||.|..+. ++.+..
T Consensus 2 ~Ln~~lA~~~~~~~~~~~~HW~v~--G~~f~~lh~~l~e~~~~~~~~~D~lAERi~~lgg~P~~~~~~~~~~s~l~~~~~ 79 (139)
T cd01043 2 ALNQLLADLYVLYLKLKNYHWNVK--GPNFFALHELFEELYDELREAIDEIAERIRALGGKPLGTLKEYAELSTIKEEPA 79 (139)
T ss_pred HHHHHHHHHHHHHHHHhCCCcCcc--CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHhHCCCCCCCC
Confidence 689999999999999999888888 8899999999999999999999999999999999998764 555532
Q ss_pred CccCCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12315 89 QEWGTTEEAFSHALQLEKDVNQVIIYFFT 117 (120)
Q Consensus 89 ~~~~~~~~~l~~aL~~Ek~v~~~l~~l~~ 117 (120)
.+.++.++++..++.|..+...+++..+
T Consensus 80 -~~~~~~~~l~~~~~~~~~~i~~~~~~i~ 107 (139)
T cd01043 80 -GVLSAKEMVAELLEDYETLIEELREAIE 107 (139)
T ss_pred -CCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567999999999999999999998765
No 20
>cd01045 Ferritin_like_AB Uncharacterized family of ferritin-like proteins found in archaea and bacteria. Ferritin-like domain found in archaea and bacteria (Ferritin_like_AB). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. This family includes unknown or hypothetical proteins which were sequenced from mostly anaerobic or microaerophilic metal-metabolizing and/or nitrogen-fixing microbes. The family includes sequences from ferric-, sulfate-, and arsenic-reducing bacteria, Geobacter, Magnetospirillum, Desulfovibrio, and Desulfitobacterium. Also included are several nitrogen-fixing endosymbiotic bacteria, Rhizobium, Mesorhizobium, and Bradyrhizobium; also phototrophic purple nonsulfur bacteria, Rhodobacter and Rhodopseudomonas, as well as, obligate thermophiles, Thermotoga, Thermoanaerobacter, and Pyrococcus. The conserved residues of a diiron center are present in this uncharacterized domain.
Probab=98.78 E-value=9.4e-08 Score=63.67 Aligned_cols=99 Identities=24% Similarity=0.258 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccCcCchhHHHHHHHHHHHHHHHHHHHHHHHHhcC--CcccccccCCC-------
Q psy12315 16 EKINKQINLELYASYVYLSMSAHFDRDVVALPGISKYFKHASDEESEHAHKLIKYLNKRG--GTLKLVDVKAP------- 86 (120)
Q Consensus 16 ~~Ln~qi~~El~as~~Yl~~a~~f~~~~~~l~g~a~~f~~~s~eE~~hA~~li~yi~~rG--g~v~~~~i~~p------- 86 (120)
+.||..+..|..+...|..++..++. ++++.+|+..+.+|+.|+..|.+.+..+| +.|.+...+..
T Consensus 1 ~~l~~a~~~E~~~~~~Y~~~a~~~~~-----~~~~~~~~~la~eE~~H~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (139)
T cd01045 1 EILALAIKMEEEAAEFYLELAEKAKD-----PELKKLFEELAEEEKEHAERLEELYEKLFGEELPELEPEDYKEEVEEEP 75 (139)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhHCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCcccHHHHHHHHhhhh
Confidence 36899999999999999999999883 38999999999999999999999999997 44443221110
Q ss_pred ----CcCccCCHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy12315 87 ----ARQEWGTTEEAFSHALQLEKDVNQVIIYFFTSL 119 (120)
Q Consensus 87 ----~~~~~~~~~~~l~~aL~~Ek~v~~~l~~l~~~~ 119 (120)
......+..++++.++..|+.....+..+.+.+
T Consensus 76 ~~~~~~~~~~~~~~~l~~a~~~E~~~~~~Y~~~~~~~ 112 (139)
T cd01045 76 EFKKALESLMDPLEALRLAIEIEKDAIEFYEELAEKA 112 (139)
T ss_pred hHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 011356789999999999999998888876543
No 21
>PF02915 Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Rubrerythrin (Rr), found in anaerobic sulphate-reducing bacteria [], is a fusion protein containing an N-terminal diiron-binding domain and a C-terminal domain homologous to rubredoxin []. The physiological role of Rr has not been identified. The 3-D structure of Desulphovibrio vulgaris rubrerythrin has been solved []. The structure reveals a tetramer of two-domain subunits. In each monomer, the N-terminal 146 residues form a four-alpha-helix bundle containing the diiron-oxo site (centre I), and the C-terminal 45 residues form a rubredoxin-like FeS4 domain.; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1VJX_A 2FZF_A 3SID_B 3QHC_B 3QHB_B 4DI0_A 1J30_B 1YV1_A 1YUZ_B 1YUX_B ....
Probab=98.68 E-value=4.8e-07 Score=60.27 Aligned_cols=101 Identities=25% Similarity=0.279 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccCcCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCCCCc-------
Q psy12315 16 EKINKQINLELYASYVYLSMSAHFDRDVVALPGISKYFKHASDEESEHAHKLIKYLNKRGGTLKLVDVKAPAR------- 88 (120)
Q Consensus 16 ~~Ln~qi~~El~as~~Yl~~a~~f~~~~~~l~g~a~~f~~~s~eE~~hA~~li~yi~~rGg~v~~~~i~~p~~------- 88 (120)
+.|+..+..|..+...|..+|.-+. +.+ |.+++.|...|.+|..|+..|.+.+.++++.+..........
T Consensus 1 e~L~~A~~~E~~~~~~Y~~~a~~~~--~~~-p~~~~~f~~lA~~E~~H~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (137)
T PF02915_consen 1 EILEMAIKMELEAAKFYRELAEKAK--DEG-PELKELFRRLAEEEQEHAKFLEKLLRKLGPGEEPPFLEEKVEYSFFPKL 77 (137)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--HTT-HHHHHHHHHHHHHHHHHHHHHHHHHCHCSTTHHTHCHCCCCCHCCCCTC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhh--hcc-cHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcchhhhhhhhhhcchh
Confidence 4688999999999999999999999 446 889999999999999999999999999987655431111100
Q ss_pred --CccCCHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy12315 89 --QEWGTTEEAFSHALQLEKDVNQVIIYFFTSL 119 (120)
Q Consensus 89 --~~~~~~~~~l~~aL~~Ek~v~~~l~~l~~~~ 119 (120)
..-.++..+++.++..|+.....+..+...+
T Consensus 78 ~~~~~~~~~~~l~~a~~~E~~~~~~Y~~~a~~~ 110 (137)
T PF02915_consen 78 EEETDENLEEALEMAIKEEKDAYEFYAELARKA 110 (137)
T ss_dssp CSSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHT
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 0112478999999999999988888876653
No 22
>cd01051 Mn_catalase Manganese catalase, ferritin-like diiron-binding domain. Manganese (Mn) catalase is a member of a broad superfamily of ferritin-like diiron enzymes. While many diiron enzymes catalyze dioxygen-dependent reactions, manganese catalase performs peroxide-dependent oxidation-reduction. Catalases are important antioxidant metalloenzymes that catalyze disproportionation of hydrogen peroxide, forming dioxygen and water. Manganese catalase, a nonheme type II catalase, contains a binuclear manganese cluster that catalyzes the redox dismutation of hydrogen peroxide, interconverting between dimanganese(II) [(2,2)] and dimanganese(III) [(3,3)] oxidation states during turnover. Mn catalases are found in a broad range of microorganisms in microaerophilic environments, including the mesophilic lactic acid bacteria (e.g., Lactobacillus plantarum) and bacterial and archaeal thermophiles (e.g., Thermus thermophilus and Pyrobaculum caldifontis). L. plantarum and T. thermophilus holoenz
Probab=98.56 E-value=5.5e-06 Score=58.10 Aligned_cols=105 Identities=16% Similarity=0.109 Sum_probs=82.8
Q ss_pred cHHHHHHHHHHHH---HHHHHHHHHHHHhhcccccCcCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCCCC
Q psy12315 11 HAETEEKINKQIN---LELYASYVYLSMSAHFDRDVVALPGISKYFKHASDEESEHAHKLIKYLNKRGGTLKLVDVKAPA 87 (120)
Q Consensus 11 ~~~~~~~Ln~qi~---~El~as~~Yl~~a~~f~~~~~~l~g~a~~f~~~s~eE~~hA~~li~yi~~rGg~v~~~~i~~p~ 87 (120)
++.....|.+++. -|+.++.+|+..++.++ ..+.++..|.+.+.||+.|++.|.+.+.+.||.+.-.+=..+-
T Consensus 18 ~p~~A~~l~~~~gG~~gEl~ai~qYl~q~~~~~----~~~~~~d~l~~ia~eEm~H~e~la~~I~~Lg~~~~g~pw~~~y 93 (156)
T cd01051 18 DPRFAKLLQEQLGGAFGELSAAMQYLFQSFNFR----EDPKYRDLLLDIGTEELSHLEMVATLIAMLLKDSQGVPWTAAY 93 (156)
T ss_pred CHHHHHHHHHHhCCccHHHHHHHHHHHHHhhcC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcCCCcc
Confidence 3445566666654 69999999999999994 2589999999999999999999999999999854332222221
Q ss_pred cCccCCHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy12315 88 RQEWGTTEEAFSHALQLEKDVNQVIIYFFTSL 119 (120)
Q Consensus 88 ~~~~~~~~~~l~~aL~~Ek~v~~~l~~l~~~~ 119 (120)
...-+++.+.+...++.|+.....+.++++.+
T Consensus 94 v~~~~d~~~~L~~ni~aE~~Ai~~Y~~l~~~~ 125 (156)
T cd01051 94 IQSSGNLVADLRSNIAAESRARLTYERLYEMT 125 (156)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 22235789999999999999999999988754
No 23
>COG1633 Uncharacterized conserved protein [Function unknown]
Probab=98.19 E-value=9.4e-05 Score=52.87 Aligned_cols=102 Identities=25% Similarity=0.237 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccCcCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc------------
Q psy12315 13 ETEEKINKQINLELYASYVYLSMSAHFDRDVVALPGISKYFKHASDEESEHAHKLIKYLNKRGGTLKL------------ 80 (120)
Q Consensus 13 ~~~~~Ln~qi~~El~as~~Yl~~a~~f~~~~~~l~g~a~~f~~~s~eE~~hA~~li~yi~~rGg~v~~------------ 80 (120)
.+.++|+..|..|..|...|..+|...... -+.+.|...+.+|++|...|-+.+-++++....
T Consensus 24 ~~~e~L~~Ai~~E~eA~~fY~~lae~~~~~-----~~rk~~~~la~eE~~H~~~f~~l~~~~~~~~~~~~~~~~~~~~~~ 98 (176)
T COG1633 24 SIEELLAIAIRGELEAIKFYEELAERIEDE-----EIRKLFEDLADEEMRHLRKFEKLLEKLTPKEVSSEEEEGEIESEI 98 (176)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhcCCH-----hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhcchhhhh
Confidence 678999999999999999999999999943 689999999999999999999999999987721
Q ss_pred -cccCC-CCcCccCCHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy12315 81 -VDVKA-PARQEWGTTEEAFSHALQLEKDVNQVIIYFFTSL 119 (120)
Q Consensus 81 -~~i~~-p~~~~~~~~~~~l~~aL~~Ek~v~~~l~~l~~~~ 119 (120)
..+.. +....-.+..+++..+...|+...+.+..+...+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~I~~a~~~E~~t~~~Y~~~~~~~ 139 (176)
T COG1633 99 LEYLQPGKEMEKSVSYLEAIEAAMEAEKDTIEFYEELLDEL 139 (176)
T ss_pred ccccCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 11111 0011234789999999999999999998887654
No 24
>PRK09448 DNA starvation/stationary phase protection protein Dps; Provisional
Probab=98.10 E-value=0.00024 Score=50.00 Aligned_cols=102 Identities=10% Similarity=0.035 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc--------cccc
Q psy12315 12 AETEEKINKQINLELYASYVYLSMSAHFDRDVVALPGISKYFKHASDEESEHAHKLIKYLNKRGGTLK--------LVDV 83 (120)
Q Consensus 12 ~~~~~~Ln~qi~~El~as~~Yl~~a~~f~~~~~~l~g~a~~f~~~s~eE~~hA~~li~yi~~rGg~v~--------~~~i 83 (120)
+++.+.||..+..++.....|..+.-+-. +.+...+..+|.+++.++++|+..+.+++...||.|. ...|
T Consensus 21 ~~~~~~Ln~~LA~~~~l~~k~~~~hW~v~--G~~f~~lH~~lee~~~~~~~~~D~iAERi~~lGg~p~~t~~e~~~~s~i 98 (162)
T PRK09448 21 KATIELLNQQLAQFIDLSLITKQAHWNMK--GANFIAVHEMLDGFRTALEDHLDTMAERAVQLGGVALGTTQVVASKTPL 98 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhcc--CCCHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCCCCHHHHHHhCCC
Confidence 45789999999999999999999888887 8899999999999999999999999999999999995 3444
Q ss_pred CCCCcCccCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy12315 84 KAPARQEWGTTEEAFSHALQLEKDVNQVIIYFF 116 (120)
Q Consensus 84 ~~p~~~~~~~~~~~l~~aL~~Ek~v~~~l~~l~ 116 (120)
+.... .+-+..++++..++.-..+...+++..
T Consensus 99 ~e~~~-~~~~~~~~l~~l~~d~~~~~~~~r~~i 130 (162)
T PRK09448 99 KSYPL-DIHNVQDHLKALADRYAIVANDVRKAI 130 (162)
T ss_pred CCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44212 333667888888888888877777654
No 25
>cd01044 Ferritin_CCC1_N Ferritin-CCC1, N-terminal ferritin-like diiron-binding domain. Ferritin-like N-terminal domain present in an uncharacterized family of proteins found in bacteria and archaea. These proteins also have a C-terminal CCC1-like transmembrane domain and are thought to be involved in iron and/or manganese transport. This domain has the conserved residues of a diiron center found in other ferritin-like proteins.
Probab=97.93 E-value=6.8e-05 Score=50.33 Aligned_cols=96 Identities=15% Similarity=0.084 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccccCcCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCCC---CcCccCC
Q psy12315 17 KINKQINLELYASYVYLSMSAHFDRDVVALPGISKYFKHASDEESEHAHKLIKYLNKRGGTLKLVDVKAP---ARQEWGT 93 (120)
Q Consensus 17 ~Ln~qi~~El~as~~Yl~~a~~f~~~~~~l~g~a~~f~~~s~eE~~hA~~li~yi~~rGg~v~~~~i~~p---~~~~~~~ 93 (120)
.+|+.+..|..+..+|..+|.... + |...+.|...|++|++|+..+-+++..+|+.|..+....- ....+.+
T Consensus 2 ~~~~~~~~E~~~~~~Y~~la~~~~--~---~~~k~~f~~lA~~E~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g 76 (125)
T cd01044 2 RLRKFQKDEITEAAIYRKLAKREK--D---PENREILLKLAEDERRHAEFWKKFLGKRGVPPPRPKLKIFFYKLLARIFG 76 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcC--C---HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCccHHHHHHHHHHHHHh
Confidence 478899999999999999999887 2 4699999999999999999999999999998751000000 0011334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy12315 94 TEEAFSHALQLEKDVNQVIIYFFT 117 (120)
Q Consensus 94 ~~~~l~~aL~~Ek~v~~~l~~l~~ 117 (120)
+..+++.+...|+.....+.++.+
T Consensus 77 ~~~~l~~~~~~E~~ai~~Y~~~~~ 100 (125)
T cd01044 77 PTFVLKLLERGEERAIEKYDRLLE 100 (125)
T ss_pred HHHHHHHHHHhHHhhHhhHHhhhh
Confidence 567888888899888887776653
No 26
>COG2406 Protein distantly related to bacterial ferritins [General function prediction only]
Probab=97.85 E-value=0.0016 Score=45.30 Aligned_cols=104 Identities=15% Similarity=0.163 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc--------ccccc
Q psy12315 12 AETEEKINKQINLELYASYVYLSMSAHFDRDVVALPGISKYFKHASDEESEHAHKLIKYLNKRGGTL--------KLVDV 83 (120)
Q Consensus 12 ~~~~~~Ln~qi~~El~as~~Yl~~a~~f~~~~~~l~g~a~~f~~~s~eE~~hA~~li~yi~~rGg~v--------~~~~i 83 (120)
+++++.|-+....|+.+.|-|+..+.-.. +..=.|...|....-.|-+.|++.+..+|.+.||.+ .++..
T Consensus 16 ~kli~~Llka~AaE~tt~YYYtilr~~l~--Gle~e~~keiae~Ar~E~r~H~e~i~~Ri~elg~~~Prd~~~l~dISgC 93 (172)
T COG2406 16 DKLIELLLKAAAAEWTTYYYYTILRYALK--GLEGEGIKEIAEEAREEDRKHFELIAPRIYELGGDLPRDMKKLHDISGC 93 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHhhcCC
Confidence 47888888999999999999999998877 555566777777777888999999999999999977 23444
Q ss_pred CCCC-cCccCCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12315 84 KAPA-RQEWGTTEEAFSHALQLEKDVNQVIIYFFT 117 (120)
Q Consensus 84 ~~p~-~~~~~~~~~~l~~aL~~Ek~v~~~l~~l~~ 117 (120)
+.|. ..+|.++.+.+..+++.|+=....+.++++
T Consensus 94 ~~a~LPedp~D~~~~l~vlv~AE~CAir~ykeic~ 128 (172)
T COG2406 94 KPAYLPEDPYDIDEILAVLVKAERCAIRAYKEICN 128 (172)
T ss_pred CCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3332 357889999999999999999988888875
No 27
>PF09537 DUF2383: Domain of unknown function (DUF2383); InterPro: IPR019052 This entry represents a functionally uncharacterised ferritin like domain.; PDB: 3FSE_B.
Probab=97.38 E-value=0.0011 Score=43.33 Aligned_cols=99 Identities=16% Similarity=0.155 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccCcCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCCCC-cCcc
Q psy12315 13 ETEEKINKQINLELYASYVYLSMSAHFDRDVVALPGISKYFKHASDEESEHAHKLIKYLNKRGGTLKLVDVKAPA-RQEW 91 (120)
Q Consensus 13 ~~~~~Ln~qi~~El~as~~Yl~~a~~f~~~~~~l~g~a~~f~~~s~eE~~hA~~li~yi~~rGg~v~~~~i~~p~-~~~~ 91 (120)
++++.||+.+.....+...|-..+.-++ + |.+..+|.+.+.+...|+..|-.++...||.|.-.+--... ...|
T Consensus 1 ~~i~~Ln~Ll~~~~d~~~~Y~~a~~~~~--~---~~lk~~f~~~~~~~~~~~~~L~~~i~~~Gg~p~~~gs~~g~~~r~~ 75 (111)
T PF09537_consen 1 ETIEALNDLLKGLHDGIEGYEKAAEKAE--D---PELKSLFQEFAQERQQHAEELQAEIQELGGEPEESGSFKGALHRAW 75 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH----S---HHHHHHHHHHHHHHHHHHHHHHHHHHHTT--H----HHCHHHH-TT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCC--C---HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcccCHHHHHHHHH
Confidence 4678999999999999999999998888 3 78999999999999999999999999999999654322211 1123
Q ss_pred CCH--------H-HHHHHHHHHHHHHHHHHHHHH
Q psy12315 92 GTT--------E-EAFSHALQLEKDVNQVIIYFF 116 (120)
Q Consensus 92 ~~~--------~-~~l~~aL~~Ek~v~~~l~~l~ 116 (120)
.++ . .+++.+..-|+.+...+.+..
T Consensus 76 ~~ik~~~~~~d~~aiL~~~~~gE~~~~~~y~~aL 109 (111)
T PF09537_consen 76 MDIKSALGGDDDEAILEECERGEDMALEAYEDAL 109 (111)
T ss_dssp THHHHS-----H----------------------
T ss_pred HHHHHHhcCCCccchhhhhhhhhhhhhhhccccc
Confidence 222 2 277888888887777766543
No 28
>PF13668 Ferritin_2: Ferritin-like domain
Probab=97.31 E-value=0.023 Score=38.32 Aligned_cols=102 Identities=19% Similarity=0.188 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccc---CcCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc-ccccCCCCcCc
Q psy12315 15 EEKINKQINLELYASYVYLSMSAHFDRD---VVALPGISKYFKHASDEESEHAHKLIKYLNKRGGTLK-LVDVKAPARQE 90 (120)
Q Consensus 15 ~~~Ln~qi~~El~as~~Yl~~a~~f~~~---~~~l~g~a~~f~~~s~eE~~hA~~li~yi~~rGg~v~-~~~i~~p~~~~ 90 (120)
.+.||-.++.|......|..-+.-+... ...=+....+|+..+..|..|+..|-+-+. |+.+. -+.+.-| .+.
T Consensus 3 ~~iL~~Al~lE~l~~~fY~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~E~~H~~~l~~~l~--g~~~~~~~~~~~~-~~~ 79 (137)
T PF13668_consen 3 LDILNFALNLEYLEADFYQQAAEGFTLQDNKAALDPEVRDLFQEIADQEQGHVDFLQAALE--GGRPVPPPAYDFP-FDP 79 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCChhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCCCCCCccccc-cCC
Confidence 3679999999999999999999855211 112345778999999999999999999988 66663 1222222 236
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy12315 91 WGTTEEAFSHALQLEKDVNQVIIYFFTSL 119 (120)
Q Consensus 91 ~~~~~~~l~~aL~~Ek~v~~~l~~l~~~~ 119 (120)
|++..+.+..++..|......+..+...+
T Consensus 80 ~~~~~~~L~~A~~~E~~~~~~Y~g~~~~~ 108 (137)
T PF13668_consen 80 FTDDASFLRLAYTLEDVGVSAYKGAAPQI 108 (137)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 78999999999999999999888776543
No 29
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=97.18 E-value=0.004 Score=44.14 Aligned_cols=61 Identities=30% Similarity=0.414 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccCcCchhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy12315 13 ETEEKINKQINLELYASYVYLSMSAHFDRDVVALPGISKYFKHASDEESEHAHKLIKYLNKRG 75 (120)
Q Consensus 13 ~~~~~Ln~qi~~El~as~~Yl~~a~~f~~~~~~l~g~a~~f~~~s~eE~~hA~~li~yi~~rG 75 (120)
.+.+-|-+...=|=.+...|+.+|...++. |+|.+++.|+..|.+|..||..+.+-+.+.+
T Consensus 4 ~t~~~L~~aF~GEs~a~~rY~~~A~~A~~e--G~~~va~lfr~iA~~E~~HA~~~~~~l~~~~ 64 (166)
T COG1592 4 ETEENLRKAFAGESMAVMRYLIFAKVAEEE--GYPEIARLFRAIAEAEAVHAKNHLKLLGKLL 64 (166)
T ss_pred hHHHHHHHHhcchHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 345666777777889999999999999955 9999999999999999999999999998755
No 30
>COG0783 Dps DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]
Probab=97.11 E-value=0.042 Score=38.57 Aligned_cols=102 Identities=11% Similarity=0.086 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc--------cccc
Q psy12315 12 AETEEKINKQINLELYASYVYLSMSAHFDRDVVALPGISKYFKHASDEESEHAHKLIKYLNKRGGTLK--------LVDV 83 (120)
Q Consensus 12 ~~~~~~Ln~qi~~El~as~~Yl~~a~~f~~~~~~l~g~a~~f~~~s~eE~~hA~~li~yi~~rGg~v~--------~~~i 83 (120)
.++.+.||+++..=..-........ ..-.+..+.-+..+|..+..+-.+|...+.+++...||.|. ...|
T Consensus 14 ~~~~~~Ln~~lAd~~~Ly~k~~~~H--WnV~G~~F~~lHe~~ee~y~el~~~~DeiAERi~~LGg~p~~t~~~~~~~s~i 91 (156)
T COG0783 14 KKIAEALNQLLADLYVLYLKTHNYH--WNVKGPNFFALHEKLEELYEELAEHVDEIAERIRALGGVPLGTLSEYLKLSSI 91 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc--cceeCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcccHHHHHHhCCC
Confidence 5778888888775444333333322 22236777778999999999999999999999999999986 3455
Q ss_pred CCCCcCccCCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12315 84 KAPARQEWGTTEEAFSHALQLEKDVNQVIIYFFT 117 (120)
Q Consensus 84 ~~p~~~~~~~~~~~l~~aL~~Ek~v~~~l~~l~~ 117 (120)
+.... + .+..++++...+--+.+.+.+++..+
T Consensus 92 ke~~~-~-~~~~~~l~~l~~~~~~l~~~~r~~~~ 123 (156)
T COG0783 92 KEEPG-D-YTAREMLKELVEDYEYLIKELRKGIE 123 (156)
T ss_pred cccCC-C-CCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55433 4 78999999999999999999888765
No 31
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=96.79 E-value=0.028 Score=49.75 Aligned_cols=103 Identities=16% Similarity=0.159 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCc--cc--cc--ccCC
Q psy12315 12 AETEEKINKQINLELYASYVYLSMSAHFDRDVVALPGISKYFKHASDEESEHAHKLIKYLNKRGGT--LK--LV--DVKA 85 (120)
Q Consensus 12 ~~~~~~Ln~qi~~El~as~~Yl~~a~~f~~~~~~l~g~a~~f~~~s~eE~~hA~~li~yi~~rGg~--v~--~~--~i~~ 85 (120)
+...+.|.-.+.+|-..-..|..+|.-.. =+.+.++|...|.+|++|...|.+...+--.. -. +. .+..
T Consensus 859 ~~~~eil~~Ai~mE~~g~~FY~~~A~~a~-----~~~~K~lF~~LA~eE~~H~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 933 (1006)
T PRK12775 859 AAALEAIRTAFEIELGGMAFYARAAKETS-----DPVLKELFLKFAGMEQEHMATLARRYHAAAPSPTEGFKIERAAIMA 933 (1006)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccchhhhhh
Confidence 45678899999999999999999998765 36899999999999999999998886431100 00 00 0001
Q ss_pred CCcCccCCHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy12315 86 PARQEWGTTEEAFSHALQLEKDVNQVIIYFFTSL 119 (120)
Q Consensus 86 p~~~~~~~~~~~l~~aL~~Ek~v~~~l~~l~~~~ 119 (120)
+....+.++.++++.|+..|++-..-+.++.+..
T Consensus 934 ~~~~~~~~~~~al~lAm~~Ekdai~fY~~la~~~ 967 (1006)
T PRK12775 934 GVKGRPDDPGNLFRIAIEFERRAVKFFKERVAET 967 (1006)
T ss_pred hhccccCCHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 1011345689999999999999999998887653
No 32
>TIGR02284 conserved hypothetical protein. Members of this protein family are found mostly in the Proteobacteria, although one member is found in the the marine planctomycete Pirellula sp. strain 1. The function is unknown.
Probab=96.67 E-value=0.036 Score=37.97 Aligned_cols=98 Identities=13% Similarity=0.159 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccCcCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCCCC-cCcc--
Q psy12315 15 EEKINKQINLELYASYVYLSMSAHFDRDVVALPGISKYFKHASDEESEHAHKLIKYLNKRGGTLKLVDVKAPA-RQEW-- 91 (120)
Q Consensus 15 ~~~Ln~qi~~El~as~~Yl~~a~~f~~~~~~l~g~a~~f~~~s~eE~~hA~~li~yi~~rGg~v~~~~i~~p~-~~~~-- 91 (120)
++.||+.|.....+..-|-..+...+ -|.+..+|...+.+...|+..|-..+...||.|.-.+--... ...|
T Consensus 2 i~~Ln~Lie~~~D~~~gY~~aae~v~-----~~~lk~~f~~~~~~~~~~~~eL~~~v~~lGg~p~~~gs~~g~lhr~w~~ 76 (139)
T TIGR02284 2 IHSLNDLIEISIDGKDGFEESAEEVK-----DPELATLFRRIAGEKSAIVSELQQVVASLGGKPEDHGSMVGSLHQFWGK 76 (139)
T ss_pred hHHHHHHHHHcccHHHHHHHHHHHCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 57899999999999999999997766 468999999999999999999999999999998742222110 0122
Q ss_pred -------CCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12315 92 -------GTTEEAFSHALQLEKDVNQVIIYFFT 117 (120)
Q Consensus 92 -------~~~~~~l~~aL~~Ek~v~~~l~~l~~ 117 (120)
++...+++.+..-|..+...+.+..+
T Consensus 77 lks~~~~~~d~aiL~~~e~gEd~~~~~y~~aL~ 109 (139)
T TIGR02284 77 IRATLTPNDDYVVLEEAERGEDRAKKAYDETLA 109 (139)
T ss_pred HHHHHcCCChHHHHHHHHHhHHHHHHHHHHHHh
Confidence 23455778888888888888777654
No 33
>cd01048 Ferritin_like_AB2 Uncharacterized family of ferritin-like proteins found in archaea and bacteria. Ferritin-like domain found in archaea and bacteria, subgroup 2 (Ferritin_like_AB2). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. The conserved residues of a diiron center are present within the putative active site.
Probab=96.47 E-value=0.14 Score=34.76 Aligned_cols=94 Identities=16% Similarity=0.128 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccCcCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCCCCc-------
Q psy12315 16 EKINKQINLELYASYVYLSMSAHFDRDVVALPGISKYFKHASDEESEHAHKLIKYLNKRGGTLKLVDVKAPAR------- 88 (120)
Q Consensus 16 ~~Ln~qi~~El~as~~Yl~~a~~f~~~~~~l~g~a~~f~~~s~eE~~hA~~li~yi~~rGg~v~~~~i~~p~~------- 88 (120)
+.|.-.+..|..+-..|..++..+. ...-|...+..|.+|...+..-+.+.|......+. .+..
T Consensus 3 ~~L~~Ale~Ek~a~~~Y~~~~~k~~--------~~~~F~~la~~E~~H~~~l~~L~~~~~~~~p~~~~-~~~~f~~~~~~ 73 (135)
T cd01048 3 AALLYALEEEKLARDVYLALYEKFG--------GLRPFSNIAESEQRHMDALKTLLERYGLPDPVDPF-SGGVFTNPQYN 73 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc--------CcchHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcc-ccccccchhHH
Confidence 5678889999999999999997763 35667888999999999888888877754321111 1111
Q ss_pred ----CccCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12315 89 ----QEWGTTEEAFSHALQLEKDVNQVIIYFFTS 118 (120)
Q Consensus 89 ----~~~~~~~~~l~~aL~~Ek~v~~~l~~l~~~ 118 (120)
..-.|..++++.+...|+.-..-+.++.+.
T Consensus 74 ~l~~~~~~s~~~al~~g~~~E~~~i~~ye~~~~~ 107 (135)
T cd01048 74 QLVEQGPKSLQDALEVGVLIEELDIADYDRLLER 107 (135)
T ss_pred HHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 124479999999999999999988887664
No 34
>cd01042 DMQH Demethoxyubiquinone hydroxylase, ferritin-like diiron-binding domain. Demethoxyubiquinone hydroxylases (DMQH) are members of the ferritin-like, diiron-carboxylate family which are present in eukaryotes (the CLK-1/CAT5 family) and prokaryotes (the Coq7 family). DMQH participates in one of the last steps of ubiquinone biosysnthesis and is responsible for DMQ hydroxylation, resulting in the formation of hydroxyubiquinone, a precursor of ubiquinone. CLK-1 is a mitochondrial inner membrane protein and Coq7 is a proposed interfacial integral membrane protein. Mutations in the Caenorhabditis elegans gene clk-1 affect biological timing and extend longevity. The conserved residues of a diiron center are present in this domain.
Probab=95.64 E-value=0.057 Score=38.26 Aligned_cols=91 Identities=20% Similarity=0.099 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHhhcccccCcCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccc-cCCCC------cCccCCHHH
Q psy12315 24 LELYASYVYLSMSAHFDRDVVALPGISKYFKHASDEESEHAHKLIKYLNKRGGTLKLVD-VKAPA------RQEWGTTEE 96 (120)
Q Consensus 24 ~El~as~~Yl~~a~~f~~~~~~l~g~a~~f~~~s~eE~~hA~~li~yi~~rGg~v~~~~-i~~p~------~~~~~~~~~ 96 (120)
=|+.|..+|...+..+. + |.+..++.+.+.+|.+|-..|-+.+..+|++|++-. +=... ....-...-
T Consensus 11 GE~gA~~IY~gQ~~~~~--~---~~~~~~l~~~~~~E~~Hl~~f~~~i~~~~~rps~l~PlW~~~gf~lG~~tal~G~~~ 85 (165)
T cd01042 11 GEVGAVRIYRGQLAVAR--D---PAVRPLIKEMLDEEKDHLAWFEELLPELGVRPSLLLPLWYVAGFALGALTALLGKKA 85 (165)
T ss_pred chHHHHHHHHHHHHHhC--C---HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHhhChHH
Confidence 48899999999999987 3 899999999999999999999999999999997532 10000 001123455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q psy12315 97 AFSHALQLEKDVNQVIIYFFTSL 119 (120)
Q Consensus 97 ~l~~aL~~Ek~v~~~l~~l~~~~ 119 (120)
++...-+.|..|...|++-.+.|
T Consensus 86 a~~~~~avE~~V~~Hy~~ql~~L 108 (165)
T cd01042 86 AMACTAAVETVVEEHYNDQLREL 108 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 77888888888888877665543
No 35
>cd07910 MiaE MiaE tRNA-modifying nonheme diiron monooxygenase, ferritin-like diiron-binding domain. MiaE is a nonheme diiron monooxygenase that catalyzes the posttranscriptional allylic hydroxylation of a modified nucleoside in tRNA called 2-methylthio-N-6-isopentenyl adenosine (ms2i6A). ms2i6A is found at position 37, next to the anticodon at the 3' position in almost all eukaryotic and bacterial tRNA's that read codons beginning with uridine. The miaE gene is absent in Escherichia coli, a finding consistent with the absence of the hydroxylated derivative of ms2i6A in this species.
Probab=95.15 E-value=0.35 Score=34.71 Aligned_cols=68 Identities=19% Similarity=0.231 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccCcCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCCC
Q psy12315 13 ETEEKINKQINLELYASYVYLSMSAHFDRDVVALPGISKYFKHASDEESEHAHKLIKYLNKRGGTLKLVDVKAP 86 (120)
Q Consensus 13 ~~~~~Ln~qi~~El~as~~Yl~~a~~f~~~~~~l~g~a~~f~~~s~eE~~hA~~li~yi~~rGg~v~~~~i~~p 86 (120)
.....|-+|.+-|..|+-.=++|=.-|- ..+++..-+-..+.||+.|-++.++-|.+||. .++++.++
T Consensus 18 nl~~iL~DHA~CE~KAA~~A~~L~~rY~----~~~~Lv~~m~~LarEEL~HFeqV~~im~~Rgi--~l~~~~~~ 85 (180)
T cd07910 18 NLDEILIDHAHCEKKAASSAMSLIFRYP----EKPELVEAMSDLAREELQHFEQVLKIMKKRGI--PLGPDSKD 85 (180)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC----CcHhHHHHHHHHHHHHHHHHHHHHHHHHHcCC--CCCCCCCC
Confidence 4456788999999999999888866665 35899999999999999999999999999995 45555544
No 36
>PF12902 Ferritin-like: Ferritin-like; PDB: 3HL1_A.
Probab=94.02 E-value=0.42 Score=35.46 Aligned_cols=62 Identities=23% Similarity=0.233 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccccCcCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc
Q psy12315 18 INKQINLELYASYVYLSMSAHFDRDVVALPGISKYFKHASDEESEHAHKLIKYLNKRGGTLKLV 81 (120)
Q Consensus 18 Ln~qi~~El~as~~Yl~~a~~f~~~~~~l~g~a~~f~~~s~eE~~hA~~li~yi~~rGg~v~~~ 81 (120)
|+..|..|+...-.||..++--+ +-.-.....-.+.-+.|||-|..-..+-++-.||.|.+.
T Consensus 1 Lq~Ai~lE~atip~YL~a~ySi~--~~~~~~~~~~i~~V~~eEMlHl~l~~Nll~alGg~P~l~ 62 (227)
T PF12902_consen 1 LQQAIELELATIPPYLTALYSIK--PGTNEEARNLIRSVAIEEMLHLSLAANLLNALGGSPRLT 62 (227)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHBS---TTSH-HHHHHHHHHHHHHHHHHHHHHHHHHTT------
T ss_pred CcHHHHHHHHHHHHHHHHHcccC--CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccc
Confidence 57789999999999998887774 323333889999999999999999999999999999886
No 37
>cd01041 Rubrerythrin Rubrerythrin, ferritin-like diiron-binding domain. Rubrerythrin domain is a nonheme iron binding domain found in many air-sensitive bacteria and archaea and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The homodimeric rubrerythrin protein contains a binuclear metal center located within a four helix bundle. Many, but not all, rubrerythrin proteins have a second domain with a rubredoxin-like hexacoordinated iron center. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system but its function is still poorly understood.
Probab=92.09 E-value=1.1 Score=29.97 Aligned_cols=60 Identities=20% Similarity=0.287 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHhhcccccCcCchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12315 12 AETEEKINKQINLELY-ASYVYLSMSAHFDRDVVALPGISKYFKHASDEESEHAHKLIKYLNK 73 (120)
Q Consensus 12 ~~~~~~Ln~qi~~El~-as~~Yl~~a~~f~~~~~~l~g~a~~f~~~s~eE~~hA~~li~yi~~ 73 (120)
..+.+.|...+..|.. +.-.|-.++..+. ..+-...+.+|.....+|..|+..|=+-+..
T Consensus 72 ~~~~~~l~~~~~~E~~e~~~~y~~~~~~A~--~e~d~~~~~~f~~i~~~E~~H~~~l~~~l~~ 132 (134)
T cd01041 72 GDTLENLKAAIAGETYEYTEMYPEFAEVAE--EEGFKEAARSFEAIAEAEKVHAERYKKALEN 132 (134)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3577889999999996 7799999999999 4589999999999999999999988776544
No 38
>PF03232 COQ7: Ubiquinone biosynthesis protein COQ7; InterPro: IPR011566 Coq7 (also known as Clk-1) is a di-iron carboxylate protein occuring in both prokaryotes and eukaryotes that is essential for ubiquinone biosynthesis [, ]. It has been implicated in the aging process as mutations in the Caenorhabditis elegans gene lead to increased lifespan []. Coq7 is a membrane-bound protein that functions as a monooxygenase to hydroxylate demethoxyubiquinone (2-methoxy-5-methyl-6-polyprenyl-1,4-benzoquinone) in the penultimate step of ubiquinone biosynthesis []. Biochemical studies indicate that NADH can serve directly as a reductant for catalytic activation of dioxygen and substrate oxidation by the enzyme, with no requirement for an additional reductase protein component []. This direct reaction with NADH is so far unique amongst members of the di-iron carboxylate protein family. This entry is specific for the bacterial Coq7 proteins.; GO: 0006744 ubiquinone biosynthetic process, 0055114 oxidation-reduction process
Probab=92.08 E-value=1.4 Score=31.45 Aligned_cols=100 Identities=16% Similarity=0.102 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccCcCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccc-cCCCCc-----
Q psy12315 15 EEKINKQINLELYASYVYLSMSAHFDRDVVALPGISKYFKHASDEESEHAHKLIKYLNKRGGTLKLVD-VKAPAR----- 88 (120)
Q Consensus 15 ~~~Ln~qi~~El~as~~Yl~~a~~f~~~~~~l~g~a~~f~~~s~eE~~hA~~li~yi~~rGg~v~~~~-i~~p~~----- 88 (120)
...|.--=.-|+.|..+|..-...+.. .|.+..++.+..++|.+|-..|-+.+..+|.+|++-. +=...-
T Consensus 4 ~r~lRVdHAGE~~A~~iY~gQ~~~~~~----~~~~~~~l~~~~~~E~~Hl~~f~~~l~~~~~RpS~l~Plw~~~g~~LG~ 79 (172)
T PF03232_consen 4 ARILRVDHAGEVGAVRIYRGQLAVARR----DPELRPFLKEMAEEEKDHLAWFEQLLPELRVRPSLLNPLWYVAGFALGA 79 (172)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHCC----CHHHHHHHHHHHHHHHHHHHHHHHHhHHcCCCCcHHHHHHHHHHHHHHH
Confidence 344444556799999999999988883 6789999999999999999999999999999886421 100000
Q ss_pred -CccCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12315 89 -QEWGTTEEAFSHALQLEKDVNQVIIYFFTS 118 (120)
Q Consensus 89 -~~~~~~~~~l~~aL~~Ek~v~~~l~~l~~~ 118 (120)
.-.-...-++...-+.|..|.+.+++-.+.
T Consensus 80 ~tal~G~~~~~a~t~avE~~V~~Hy~~Ql~~ 110 (172)
T PF03232_consen 80 LTALLGDKAAMACTAAVETVVEEHYNDQLRE 110 (172)
T ss_pred HHHhhchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 001123446666667777777766655443
No 39
>cd01046 Rubrerythrin_like rubrerythrin-like, diiron-binding domain. Rubrerythrin-like domain, similar to rubrerythrin, a nonheme iron binding domain found in many air-sensitive bacteria and archaea, and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system. The rubrerythrin protein has two domains, a binuclear metal center located within a four-helix bundle of the rubrerythrin domain, and a rubredoxin domain. The Rubrerythrin-like domains in this CD are singular domains (no C-terminus rubredoxin domain) and are phylogenetically distinct from rubrerythrin domains of rubrerythrin-rubredoxin proteins.
Probab=91.92 E-value=1.2 Score=29.59 Aligned_cols=59 Identities=19% Similarity=0.228 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12315 12 AETEEKINKQINLELYASYVYLSMSAHFDRDVVALPGISKYFKHASDEESEHAHKLIKYLN 72 (120)
Q Consensus 12 ~~~~~~Ln~qi~~El~as~~Yl~~a~~f~~~~~~l~g~a~~f~~~s~eE~~hA~~li~yi~ 72 (120)
..+.+.|...+..|...+-.|-.++..+. ..+-...+.||+.....|..|+..+-+-+.
T Consensus 62 ~~~~~~le~a~~~E~~~~~~~~~~~~~A~--~egd~~~~~~~~~~~~~E~~H~~~~~~~l~ 120 (123)
T cd01046 62 EDTKENLEMMLEGEAGANEGKKDAATEAK--AEGLDEAHDFFHEAAKDEARHGKMLKGLLE 120 (123)
T ss_pred ccHHHHHHHHHHhHHHHHHhHHHHHHHHH--HcCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56778899999999999999999999999 458999999999999999999999877654
No 40
>PF02915 Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Rubrerythrin (Rr), found in anaerobic sulphate-reducing bacteria [], is a fusion protein containing an N-terminal diiron-binding domain and a C-terminal domain homologous to rubredoxin []. The physiological role of Rr has not been identified. The 3-D structure of Desulphovibrio vulgaris rubrerythrin has been solved []. The structure reveals a tetramer of two-domain subunits. In each monomer, the N-terminal 146 residues form a four-alpha-helix bundle containing the diiron-oxo site (centre I), and the C-terminal 45 residues form a rubredoxin-like FeS4 domain.; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1VJX_A 2FZF_A 3SID_B 3QHC_B 3QHB_B 4DI0_A 1J30_B 1YV1_A 1YUZ_B 1YUX_B ....
Probab=90.14 E-value=2.7 Score=27.25 Aligned_cols=53 Identities=30% Similarity=0.337 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcCchhHHHHHHHHHHHHHHHHHHHHH
Q psy12315 12 AETEEKINKQINLELYASYVYLSMSAHFDRDVVALPGISKYFKHASDEESEHAHKLIK 69 (120)
Q Consensus 12 ~~~~~~Ln~qi~~El~as~~Yl~~a~~f~~~~~~l~g~a~~f~~~s~eE~~hA~~li~ 69 (120)
.....++...+..|-.+...|..++..+. -|...++|...+.+|..|...|-+
T Consensus 83 ~~~~~~l~~a~~~E~~~~~~Y~~~a~~~~-----~~~~~~~~~~l~~~E~~H~~~l~~ 135 (137)
T PF02915_consen 83 ENLEEALEMAIKEEKDAYEFYAELARKAP-----DPEIRKLFEELAKEEKEHEDLLEK 135 (137)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHHTT-----SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788999999999999999999998876 467899999999999999998754
No 41
>cd07908 Mn_catalase_like Manganese catalase-like protein, ferritin-like diiron-binding domain. This uncharacterized bacterial protein family has a ferritin-like domain similar to that of the manganese catalase protein of Lactobacillus plantarum and the bll3758 protein of Bradyrhizobium japonicum. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio
Probab=89.88 E-value=2.1 Score=29.25 Aligned_cols=54 Identities=19% Similarity=0.129 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcCchhHHHHHHHHHHHHHHHHHHHHHH
Q psy12315 12 AETEEKINKQINLELYASYVYLSMSAHFDRDVVALPGISKYFKHASDEESEHAHKLIKY 70 (120)
Q Consensus 12 ~~~~~~Ln~qi~~El~as~~Yl~~a~~f~~~~~~l~g~a~~f~~~s~eE~~hA~~li~y 70 (120)
....+.|...+..|-.+...|..++...+ | +.....|...+.+|..|...|-+.
T Consensus 100 ~~~~~~L~~~~~~E~~ai~~Y~~~~~~~~--d---~~~r~ll~~I~~eE~~H~~~L~~~ 153 (154)
T cd07908 100 ESIKEMLKLDIASEKAAIAKYKRQAETIK--D---PYIRALLNRIILDEKLHIKILEEL 153 (154)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHcC--C---HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35677999999999999999999998655 3 678899999999999999888653
No 42
>cd07648 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proteins in this group have been named FCH domain Only (FCHO) proteins. Vertebrates have two members, FCHO1 and FCHO2. These proteins contain an F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=89.29 E-value=1.7 Score=32.52 Aligned_cols=68 Identities=10% Similarity=0.148 Sum_probs=42.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCCCCcCccCCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12315 46 LPGISKYFKHASDEESEHAHKLIKYLNKRGGTLKLVDVKAPARQEWGTTEEAFSHALQLEKDVNQVIIYFFT 117 (120)
Q Consensus 46 l~g~a~~f~~~s~eE~~hA~~li~yi~~rGg~v~~~~i~~p~~~~~~~~~~~l~~aL~~Ek~v~~~l~~l~~ 117 (120)
+.-++.||++.|.-|.++|..|.+.-.+-.+.+..+... ..|..+....+..-..-..+...|.++++
T Consensus 21 ~~el~~f~keRa~IEe~Yak~L~kLakk~~~~~~~gt~~----~~w~~i~~~~e~~a~~H~~l~~~L~~~~~ 88 (261)
T cd07648 21 VKELADFLRERATIEETYSKALNKLAKQASNSSQLGTFA----PLWLVLRVSTEKLSELHLQLVQKLQELIK 88 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCcHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456999999999999999999999888776644322221 23655544444333233344444444443
No 43
>cd07674 F-BAR_FCHO1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 1 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FCH domain Only 1 (FCHO1) may be involved in clathrin-coated vesicle formation. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO2 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=88.96 E-value=1.6 Score=32.78 Aligned_cols=65 Identities=6% Similarity=0.061 Sum_probs=41.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCCCCcCccCCHHHHHHHHHHHHHHHHHHHHHH
Q psy12315 47 PGISKYFKHASDEESEHAHKLIKYLNKRGGTLKLVDVKAPARQEWGTTEEAFSHALQLEKDVNQVIIYF 115 (120)
Q Consensus 47 ~g~a~~f~~~s~eE~~hA~~li~yi~~rGg~v~~~~i~~p~~~~~~~~~~~l~~aL~~Ek~v~~~l~~l 115 (120)
.-|+.||+++|.=|.++|..|.+.-..-++.+.++....+ |.......+..-..-..+...|.++
T Consensus 22 kel~~flkeRa~IEe~Yak~L~klak~~~~~~e~Gtl~~~----w~~~~~~~E~~a~~H~~l~~~L~~~ 86 (261)
T cd07674 22 KELADFVRERAAIEETYSKSMSKLSKMASNGSPLGTFAPM----WEVFRVSSDKLALCHLELMRKLNDL 86 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCccchHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3589999999999999999999988665554444433333 5544444444444444444444443
No 44
>cd01055 Nonheme_Ferritin nonheme-containing ferritins. Nonheme Ferritin domain, found in archaea and bacteria, is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The ferritin protein shell is composed of 24 protein subunits arranged in 432 symmetry. Each protein subunit, a four-helix bundle with a fifth short terminal helix, contains a dinuclear ferroxidase center (H type). Unique to this group of proteins is a third metal site in the ferroxidase center. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite.
Probab=88.41 E-value=4.1 Score=27.67 Aligned_cols=59 Identities=10% Similarity=-0.030 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccCcCchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12315 13 ETEEKINKQINLELYASYVYLSMSAHFDRDVVALPGISKYFKHASDEESEHAHKLIKYLNK 73 (120)
Q Consensus 13 ~~~~~Ln~qi~~El~as~~Yl~~a~~f~~~~~~l~g~a~~f~~~s~eE~~hA~~li~yi~~ 73 (120)
.+.+.|...++.|-.+...|..++..+.. .+-+..+.||.....++.+|...+-+++..
T Consensus 80 ~~~~~l~~al~~E~~~~~~~~~l~~~A~~--~~D~~~~~~l~~~l~~q~e~~~~~~~~l~~ 138 (156)
T cd01055 80 SLLEVFEAALEHEQKVTESINNLVDLALE--EKDYATFNFLQWFVKEQVEEEALARDILDK 138 (156)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47789999999999999999999999994 477899999999999999999888888773
No 45
>cd01045 Ferritin_like_AB Uncharacterized family of ferritin-like proteins found in archaea and bacteria. Ferritin-like domain found in archaea and bacteria (Ferritin_like_AB). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. This family includes unknown or hypothetical proteins which were sequenced from mostly anaerobic or microaerophilic metal-metabolizing and/or nitrogen-fixing microbes. The family includes sequences from ferric-, sulfate-, and arsenic-reducing bacteria, Geobacter, Magnetospirillum, Desulfovibrio, and Desulfitobacterium. Also included are several nitrogen-fixing endosymbiotic bacteria, Rhizobium, Mesorhizobium, and Bradyrhizobium; also phototrophic purple nonsulfur bacteria, Rhodobacter and Rhodopseudomonas, as well as, obligate thermophiles, Thermotoga, Thermoanaerobacter, and Pyrococcus. The conserved residues of a diiron center are present in this uncharacterized domain.
Probab=87.85 E-value=5.5 Score=25.70 Aligned_cols=55 Identities=22% Similarity=0.301 Sum_probs=46.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcCchhHHHHHHHHHHHHHHHHHHHHHH
Q psy12315 11 HAETEEKINKQINLELYASYVYLSMSAHFDRDVVALPGISKYFKHASDEESEHAHKLIKY 70 (120)
Q Consensus 11 ~~~~~~~Ln~qi~~El~as~~Yl~~a~~f~~~~~~l~g~a~~f~~~s~eE~~hA~~li~y 70 (120)
.....+.|...+..|-.+.-.|..++.-+. + +.....|...+.+|+.|...|-+.
T Consensus 84 ~~~~~~~l~~a~~~E~~~~~~Y~~~~~~~~--d---~~~~~~~~~l~~~E~~H~~~l~~~ 138 (139)
T cd01045 84 LMDPLEALRLAIEIEKDAIEFYEELAEKAE--D---PEVKKLFEELAEEERGHLRLLEEL 138 (139)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHcC--C---HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345678999999999999999999997766 2 368899999999999999988653
No 46
>cd07673 F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 2 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. The specific function of FCH domain Only 2 (FCHO2) is still unknown. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO1 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=86.86 E-value=2.8 Score=31.79 Aligned_cols=35 Identities=11% Similarity=0.173 Sum_probs=29.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc
Q psy12315 47 PGISKYFKHASDEESEHAHKLIKYLNKRGGTLKLV 81 (120)
Q Consensus 47 ~g~a~~f~~~s~eE~~hA~~li~yi~~rGg~v~~~ 81 (120)
.-++.||+++|.=|.++|..|.+.-.+-++.+..+
T Consensus 29 kel~~f~keRa~iEe~Yak~L~kLak~~~~~~~~G 63 (269)
T cd07673 29 KELSDFIRERATIEEAYSRSMTKLAKSASNYSQLG 63 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcC
Confidence 45889999999999999999999988776555443
No 47
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=86.55 E-value=2.7 Score=31.10 Aligned_cols=32 Identities=16% Similarity=0.316 Sum_probs=26.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q psy12315 46 LPGISKYFKHASDEESEHAHKLIKYLNKRGGT 77 (120)
Q Consensus 46 l~g~a~~f~~~s~eE~~hA~~li~yi~~rGg~ 77 (120)
...|+.||+..|.=|.++|.+|-+--..-++.
T Consensus 21 ~~el~~f~keRa~iE~eYak~L~kLak~~~~~ 52 (239)
T cd07647 21 CKELEDFLKQRAKAEEDYGKALLKLSKSAGPG 52 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 45689999999999999999999987664433
No 48
>COG1633 Uncharacterized conserved protein [Function unknown]
Probab=85.89 E-value=7.9 Score=27.59 Aligned_cols=59 Identities=22% Similarity=0.258 Sum_probs=51.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcCchhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy12315 11 HAETEEKINKQINLELYASYVYLSMSAHFDRDVVALPGISKYFKHASDEESEHAHKLIKYLNKR 74 (120)
Q Consensus 11 ~~~~~~~Ln~qi~~El~as~~Yl~~a~~f~~~~~~l~g~a~~f~~~s~eE~~hA~~li~yi~~r 74 (120)
+....++|-..+..|-.++.+|.-++..-.. ++..+.|+..+..|+.|+..+-.+++..
T Consensus 111 ~~~~~~~I~~a~~~E~~t~~~Y~~~~~~~~~-----~~~~~~~~~~a~~E~~H~~~l~~~~~~~ 169 (176)
T COG1633 111 SVSYLEAIEAAMEAEKDTIEFYEELLDELVN-----EEAKKLFKTIADDEKGHASGLLSLYNRL 169 (176)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHccC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467889999999999999999999987773 4788999999999999999998887654
No 49
>PF14530 DUF4439: Domain of unknown function (DUF4439); PDB: 2IB0_B.
Probab=84.02 E-value=11 Score=25.62 Aligned_cols=94 Identities=17% Similarity=0.079 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccccCcCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCCCCcCccCCHHH
Q psy12315 17 KINKQINLELYASYVYLSMSAHFDRDVVALPGISKYFKHASDEESEHAHKLIKYLNKRGGTLKLVDVKAPARQEWGTTEE 96 (120)
Q Consensus 17 ~Ln~qi~~El~as~~Yl~~a~~f~~~~~~l~g~a~~f~~~s~eE~~hA~~li~yi~~rGg~v~~~~i~~p~~~~~~~~~~ 96 (120)
+|+..+.-|..+.|.|=..+.+..- ....--.....+.|...+.+...+..+|+.|......=.....-+++..
T Consensus 1 AL~~al~aE~aAvy~ygv~~a~~~~------~~r~~~~~~~~~HR~rRd~l~~~l~~~g~~~p~~~aaY~lP~~v~d~~s 74 (131)
T PF14530_consen 1 ALQAALAAEHAAVYGYGVAAARLDG------DRRAAARAALAAHRARRDALAAALRAAGATPPPPEAAYQLPFPVTDPAS 74 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHS-G------GGHHHHHHHHHHHHHHHHHHHHHHHHTT-------SS---SS---SHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCCH------HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCHHH
Confidence 4788899999999999999998873 3455566777888899999999999999888543332111124668999
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy12315 97 AFSHALQLEKDVNQVIIYFF 116 (120)
Q Consensus 97 ~l~~aL~~Ek~v~~~l~~l~ 116 (120)
+...+..+|..+......+.
T Consensus 75 a~~la~~lE~~~a~aw~~lv 94 (131)
T PF14530_consen 75 AAALAAALEDDCAAAWRALV 94 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999888876
No 50
>cd07610 FCH_F-BAR The Extended FES-CIP4 Homology (FCH) or F-BAR (FCH and Bin/Amphiphysin/Rvs) domain, a dimerization module that binds and bends membranes. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. F-BAR domain containing proteins, also known as Pombe Cdc15 homology (PCH) family proteins, include Fes and Fer tyrosine kinases, PACSINs/Syndapins, FCHO, PSTPIP, CIP4-like proteins and srGAPs. Many members also contain an SH3 domain and play roles in endocytosis. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. These tubules have diameters larger than those observed with N-BARs. The F-BAR domains of some members such as NOSTRIN and Rgd1 are important for the subcellular localization of the protein.
Probab=83.85 E-value=5.6 Score=27.79 Aligned_cols=35 Identities=23% Similarity=0.247 Sum_probs=30.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Q psy12315 46 LPGISKYFKHASDEESEHAHKLIKYLNKRGGTLKL 80 (120)
Q Consensus 46 l~g~a~~f~~~s~eE~~hA~~li~yi~~rGg~v~~ 80 (120)
+..++.||++.|.=|.++|.+|-+--..-.+.+..
T Consensus 16 ~~e~~~f~keRa~iE~eYak~L~kLak~~~~~~~~ 50 (191)
T cd07610 16 LKDLREFLKKRAAIEEEYAKNLQKLAKKFSKKPES 50 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCC
Confidence 55799999999999999999999998877766543
No 51
>PF04305 DUF455: Protein of unknown function (DUF455); InterPro: IPR007402 This is a family of uncharacterised proteins.
Probab=83.81 E-value=4.9 Score=30.36 Aligned_cols=76 Identities=18% Similarity=0.208 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCCCCcCcc
Q psy12315 12 AETEEKINKQINLELYASYVYLSMSAHFDRDVVALPGISKYFKHASDEESEHAHKLIKYLNKRGGTLKLVDVKAPARQEW 91 (120)
Q Consensus 12 ~~~~~~Ln~qi~~El~as~~Yl~~a~~f~~~~~~l~g~a~~f~~~s~eE~~hA~~li~yi~~rGg~v~~~~i~~p~~~~~ 91 (120)
+.-...|..-.+.|++|....+-...=|.. +... .|-.=|-+.+.+|..|...+.+++...| ..+++.+... .-|
T Consensus 65 ~~r~~llHaiAhIE~~AIdLa~Da~~RF~~-~lP~-~f~~D~~~va~dEarHf~ll~~rL~~lG--~~yGd~P~h~-gLw 139 (253)
T PF04305_consen 65 EGRAALLHAIAHIELNAIDLALDAIYRFHP-NLPR-EFYDDWLRVADDEARHFRLLRERLEELG--SDYGDLPAHD-GLW 139 (253)
T ss_pred hhHHHHHHHhcchHHHHHHHHHHHHHHHhc-cCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCCCCcchhh-HHH
Confidence 344677888889999999999999999921 3222 3444555789999999999999999999 5778887773 245
Q ss_pred C
Q psy12315 92 G 92 (120)
Q Consensus 92 ~ 92 (120)
.
T Consensus 140 ~ 140 (253)
T PF04305_consen 140 E 140 (253)
T ss_pred H
Confidence 4
No 52
>PF07875 Coat_F: Coat F domain; InterPro: IPR012851 The Coat F proteins contribute to the Bacillales spore coat. They occur multiple times in the genomes in which they are found. Bacillus subtilis endospore protein coats protect them and may play a role in their germination []. Spore coat protein F, on the outer surface of the endospore, is one of a suite of proteins that could be used to differentiate between members of the Bacillus genus [].
Probab=82.99 E-value=7.2 Score=22.76 Aligned_cols=57 Identities=19% Similarity=0.261 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccccCcCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Q psy12315 17 KINKQINLELYASYVYLSMSAHFDRDVVALPGISKYFKHASDEESEHAHKLIKYLNKRGGTL 78 (120)
Q Consensus 17 ~Ln~qi~~El~as~~Yl~~a~~f~~~~~~l~g~a~~f~~~s~eE~~hA~~li~yi~~rGg~v 78 (120)
.+++.++.+=.++..|...+.=+. =|.+-..|.....++.+++..+.+++.++|=-+
T Consensus 5 i~~d~L~~~K~~~~~y~~a~~E~~-----np~lR~~l~~~~~~~~~~~~~l~~~m~~kGwY~ 61 (64)
T PF07875_consen 5 IANDLLNSEKAAARNYATAALECA-----NPELRQILQQILNECQQMQYELFNYMNQKGWYQ 61 (64)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcC
Confidence 466777888888888988887777 368899999999999999999999999999543
No 53
>cd00657 Ferritin_like Ferritin-like superfamily of diiron-containing four-helix-bundle proteins. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterioferritin, ferritin, rubrerythrin, aromatic and alkene monooxygenase hydroxylases (AAMH), ribonucleotide reductase R2 (RNRR2), acyl-ACP-desaturases (Acyl_ACP_Desat), manganese (Mn) catalases, demethoxyub
Probab=82.98 E-value=8.6 Score=23.63 Aligned_cols=53 Identities=19% Similarity=0.291 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccCcCchhHHHHHHHHHHHHHHHHHHHHHH
Q psy12315 13 ETEEKINKQINLELYASYVYLSMSAHFDRDVVALPGISKYFKHASDEESEHAHKLIKY 70 (120)
Q Consensus 13 ~~~~~Ln~qi~~El~as~~Yl~~a~~f~~~~~~l~g~a~~f~~~s~eE~~hA~~li~y 70 (120)
.....|-..+..|-.+...|..++..+. -+....+|.....+|..|...+.++
T Consensus 77 ~~~~~l~~~~~~E~~~~~~y~~~~~~~~-----d~~~~~~~~~~~~~E~~H~~~~~~~ 129 (130)
T cd00657 77 DPAEALRAALEVEARAIAAYRELIEQAD-----DPELRRLLERILADEQRHAAWFRKL 129 (130)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhcC-----ChHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3456777779999999999999998877 3568999999999999999988765
No 54
>COG3546 Mn-containing catalase [Inorganic ion transport and metabolism]
Probab=81.51 E-value=7.2 Score=29.80 Aligned_cols=65 Identities=15% Similarity=0.105 Sum_probs=52.6
Q ss_pred cHHHHHHHHHHH---HHHHHHHHHHHHHhhcccccCcCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Q psy12315 11 HAETEEKINKQI---NLELYASYVYLSMSAHFDRDVVALPGISKYFKHASDEESEHAHKLIKYLNKRGGTLKL 80 (120)
Q Consensus 11 ~~~~~~~Ln~qi---~~El~as~~Yl~~a~~f~~~~~~l~g~a~~f~~~s~eE~~hA~~li~yi~~rGg~v~~ 80 (120)
++...++|.+|+ .=||.++.+|+.-+.-|. + +++-..+.+-+-||..|.+.+..-++........
T Consensus 18 dp~~A~~lqEqlGG~~GElsaamqYl~Q~fn~r--~---~~~~dll~DI~TEEl~HlEmvat~I~~L~~ga~~ 85 (277)
T COG3546 18 NPQLAKLLQEQLGGAFGELSAAMQYLFQGFNVR--D---AKYKDLLMDIGTEELSHLEMVATMINLLNKGATG 85 (277)
T ss_pred ChHHHHHHHHHhCCcchHHHHHHHHHHhhcccC--c---hHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCCC
Confidence 345667777776 469999999999998887 3 6899999999999999999998888776544433
No 55
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=81.41 E-value=5.6 Score=29.25 Aligned_cols=33 Identities=27% Similarity=0.336 Sum_probs=28.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Q psy12315 46 LPGISKYFKHASDEESEHAHKLIKYLNKRGGTL 78 (120)
Q Consensus 46 l~g~a~~f~~~s~eE~~hA~~li~yi~~rGg~v 78 (120)
+..+..||++.|.=|.++|.+|-+--.+-++.+
T Consensus 21 ~~el~~f~keRa~iE~eYak~L~kLakk~~~~~ 53 (236)
T cd07651 21 LEELRSFYKERASIEEEYAKRLEKLSRKSLGGS 53 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccccCCC
Confidence 557999999999999999999999887766543
No 56
>COG2941 CAT5 Ubiquinone biosynthesis protein COQ7 [Coenzyme metabolism]
Probab=80.85 E-value=6.3 Score=28.68 Aligned_cols=53 Identities=28% Similarity=0.224 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHhhcccccCcCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Q psy12315 23 NLELYASYVYLSMSAHFDRDVVALPGISKYFKHASDEESEHAHKLIKYLNKRGGTLKL 80 (120)
Q Consensus 23 ~~El~as~~Yl~~a~~f~~~~~~l~g~a~~f~~~s~eE~~hA~~li~yi~~rGg~v~~ 80 (120)
.=|+.|-.+|.--+.+.... -+.. -+++.+++|-.|--.+-+++.+||.+|.+
T Consensus 51 aGE~~A~~iY~GQ~~~~r~~---~~R~--~l~em~d~E~~HL~~f~~~l~e~~vRPsl 103 (204)
T COG2941 51 AGELGAQAIYQGQAAVARSP---EPRI--QLKEMADEEIDHLAWFEQRLLELGVRPSL 103 (204)
T ss_pred hhHHHHHHHHhhHHHHHcCc---chHH--HHHHHHHHHHHHHHHHHHHHHHccCCccH
Confidence 35999999999999998844 3333 89999999999999999999999999975
No 57
>cd01051 Mn_catalase Manganese catalase, ferritin-like diiron-binding domain. Manganese (Mn) catalase is a member of a broad superfamily of ferritin-like diiron enzymes. While many diiron enzymes catalyze dioxygen-dependent reactions, manganese catalase performs peroxide-dependent oxidation-reduction. Catalases are important antioxidant metalloenzymes that catalyze disproportionation of hydrogen peroxide, forming dioxygen and water. Manganese catalase, a nonheme type II catalase, contains a binuclear manganese cluster that catalyzes the redox dismutation of hydrogen peroxide, interconverting between dimanganese(II) [(2,2)] and dimanganese(III) [(3,3)] oxidation states during turnover. Mn catalases are found in a broad range of microorganisms in microaerophilic environments, including the mesophilic lactic acid bacteria (e.g., Lactobacillus plantarum) and bacterial and archaeal thermophiles (e.g., Thermus thermophilus and Pyrobaculum caldifontis). L. plantarum and T. thermophilus holoenz
Probab=80.78 E-value=16 Score=25.38 Aligned_cols=60 Identities=18% Similarity=0.158 Sum_probs=51.6
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcCchhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy12315 10 FHAETEEKINKQINLELYASYVYLSMSAHFDRDVVALPGISKYFKHASDEESEHAHKLIKYLNKR 74 (120)
Q Consensus 10 ~~~~~~~~Ln~qi~~El~as~~Yl~~a~~f~~~~~~l~g~a~~f~~~s~eE~~hA~~li~yi~~r 74 (120)
.+..+...|...|..|-.|...|.-+....+ | |++-.-+.....+|..|...|-+.+...
T Consensus 96 ~~~d~~~~L~~ni~aE~~Ai~~Y~~l~~~~~--D---p~v~~~l~~I~~rE~~H~~~f~~~l~~~ 155 (156)
T cd01051 96 SSGNLVADLRSNIAAESRARLTYERLYEMTD--D---PGVKDTLSFLLVREIVHQNAFGKALESL 155 (156)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHcC--C---HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5567888999999999999999999999877 4 6677777778999999999999887654
No 58
>PF11860 DUF3380: Protein of unknown function (DUF3380); InterPro: IPR024408 Proteins in this entry including lysozyme from Enterobacteria phage PRD1 [, ].
Probab=78.98 E-value=6.8 Score=28.02 Aligned_cols=59 Identities=7% Similarity=0.285 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccCcCchhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy12315 15 EEKINKQINLELYASYVYLSMSAHFDRDVVALPGISKYFKHASDEESEHAHKLIKYLNKRG 75 (120)
Q Consensus 15 ~~~Ln~qi~~El~as~~Yl~~a~~f~~~~~~l~g~a~~f~~~s~eE~~hA~~li~yi~~rG 75 (120)
...|++....+=.|.=.+..|++.+. ..|++-...|+.....-|..|-.-|+.||...+
T Consensus 77 A~~ld~~AAl~SaSWG~fQIMGfn~~--~~Gy~sv~~fv~am~~se~~Ql~af~~Fi~~~~ 135 (175)
T PF11860_consen 77 ARALDEEAALESASWGLFQIMGFNWK--ALGYASVEEFVEAMCESEAAQLDAFVRFIKANP 135 (175)
T ss_pred HHhhCHHHHHHHhhhhHHHHHHHHHH--HcCCCCHHHHHHHHHhCHHHHHHHHHHHHHcCH
Confidence 45688888899999999999999999 779999999999999999999999999999865
No 59
>PF05067 Mn_catalase: Manganese containing catalase; InterPro: IPR007760 Catalases (1.11.1.6 from EC) are antioxidant enzymes that catalyse the conversion of hydrogen peroxide to water and molecular oxygen. Hydrogen peroxide is produced as a consequence of oxidative cellular metabolism and can be converted to the highly reactive hydroxyl radical via transition metals, this radical being able to damage a wide variety of molecules within a cell, leading to oxidative stress and cell death. Catalases act to neutralise hydrogen peroxide toxicity, and are produced by all aerobic organisms ranging from bacteria to man. There are three structurally independent classes of catalases: ubiquitous mono-functional haem-containing catalases (IPR002226 from INTERPRO), bifunctional haem-containing catalase-peroxidases that are closely related to plant peroxidases (IPR000763 from INTERPRO), and non-haem manganese-containing catalases []. This entry represents the non-haem Mn-catalases, which are found in several bacterial species []. The structure of the Mn catalase from Lactobacillus plantarum reveals a homo-hexamer, where each subunit contains a dimanganese active site that is accessed by a single substrate channel []. The dimanganese active site performs a two-electron catalytic cycle that alternately oxidises and reduces the dimanganese atoms in a manner that is similar to its haem-counterpart found in other catalases.; PDB: 1JKV_D 1JKU_D 1O9I_E 2CWL_A 2V8T_B 2V8U_A.
Probab=78.32 E-value=5.9 Score=30.51 Aligned_cols=103 Identities=14% Similarity=0.165 Sum_probs=69.5
Q ss_pred cHHHHHHHHHHHH---HHHHHHHHHHHHhhcccccCcCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccc-----
Q psy12315 11 HAETEEKINKQIN---LELYASYVYLSMSAHFDRDVVALPGISKYFKHASDEESEHAHKLIKYLNKRGGTLKLVD----- 82 (120)
Q Consensus 11 ~~~~~~~Ln~qi~---~El~as~~Yl~~a~~f~~~~~~l~g~a~~f~~~s~eE~~hA~~li~yi~~rGg~v~~~~----- 82 (120)
++....+|.+|+. -||.++.+|+..+.-|... . .+...+..-+-||..|.+.+..-|.+....+....
T Consensus 18 DP~~A~~LqeqlGG~~GElsaamqYl~Q~~~~~~~--~--~~kdlL~dIatEEl~H~Emvat~I~~Ll~g~~~~~~~~~~ 93 (283)
T PF05067_consen 18 DPRFAKLLQEQLGGPFGELSAAMQYLFQSFNMRGP--E--KYKDLLMDIATEELGHVEMVATMIAQLLKGAPPEEQEEAA 93 (283)
T ss_dssp -HHHHHHHCHHHHSTTSHHHHHHHHHHHHHH-SST--T--TTHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTSSHHHHH
T ss_pred CHHHHHHHHHHhcCCcchHHHHHHHHHHhhcCCCc--h--HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcchhhhhc
Confidence 3456667777764 6999999999999999832 2 24699999999999999998877766543221110
Q ss_pred --------c----------C-----CCCc---Ccc--------CCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12315 83 --------V----------K-----APAR---QEW--------GTTEEAFSHALQLEKDVNQVIIYFFT 117 (120)
Q Consensus 83 --------i----------~-----~p~~---~~~--------~~~~~~l~~aL~~Ek~v~~~l~~l~~ 117 (120)
+ . .|.. ..| +++..-|...+..|....-.+.+|++
T Consensus 94 ~~~p~~~~~~~~~n~~h~i~~g~g~~p~ds~G~PWt~~yv~~sGdl~aDL~~NiaAE~~AR~~yerL~~ 162 (283)
T PF05067_consen 94 PGDPLLAAIMGGGNPQHYIVHGGGAYPVDSNGVPWTAAYVQASGDLIADLRSNIAAEQRARLQYERLYE 162 (283)
T ss_dssp GGGTTTGGGGCSS-SHHHHTSSSS--SB-TTS-B-BGGG----S-HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccchHHHHhhcCCCchhhhcCCCCCCccCCCCCcccchhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0 0100 124 35788889999999888877777765
No 60
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=77.56 E-value=15 Score=33.06 Aligned_cols=58 Identities=17% Similarity=0.110 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccccCcCchhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy12315 14 TEEKINKQINLELYASYVYLSMSAHFDRDVVALPGISKYFKHASDEESEHAHKLIKYLNKRG 75 (120)
Q Consensus 14 ~~~~Ln~qi~~El~as~~Yl~~a~~f~~~~~~l~g~a~~f~~~s~eE~~hA~~li~yi~~rG 75 (120)
..++|.-.+..|-.+...|.-++..-. |- ....++|...++||++|...|-+.+....
T Consensus 942 ~~~al~lAm~~Ekdai~fY~~la~~~~--d~--e~~k~l~~~LA~EEk~Hl~~L~~~~d~~~ 999 (1006)
T PRK12775 942 PGNLFRIAIEFERRAVKFFKERVAETP--DG--SVERQLYKELAAEEREHVALLTTEFERWK 999 (1006)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCC--Ch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467999999999999999999998877 21 23578999999999999999988876543
No 61
>cd07652 F-BAR_Rgd1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Saccharomyces cerevisiae Rho GTPase activating protein Rgd1 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Saccharomyces cerevisiae Rgd1 is a GTPase activating protein (GAP) with activity towards Rho3p and Rho4p, which are involved in bud growth and cytokinesis, respectively. At low pH, S. cerevisiae Rgd1 is required for cell survival and the activation of the protein kinase C pathway, which is important in cell integrity and the maintenance of cell shape. It contains an N-terminal F-BAR domain and a C-terminal Rho GAP domain. The F-BAR domain of S. cerevisiae Rgd1 binds to phosphoinositides and plays an important role in the localization of the protein to the bud tip/neck during the cell cycle. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that
Probab=77.46 E-value=13 Score=27.45 Aligned_cols=33 Identities=24% Similarity=0.260 Sum_probs=27.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Q psy12315 46 LPGISKYFKHASDEESEHAHKLIKYLNKRGGTL 78 (120)
Q Consensus 46 l~g~a~~f~~~s~eE~~hA~~li~yi~~rGg~v 78 (120)
...|+.||++.|.=|.+||..|.+--..-.+.+
T Consensus 21 ~ke~~~FlkkRa~iEeeYak~L~KLak~~~~~~ 53 (234)
T cd07652 21 AKEFATFLKKRAAIEEEHARGLKKLARTTLDTY 53 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 457999999999999999999999776655433
No 62
>smart00055 FCH Fes/CIP4 homology domain. Alignment extended from original report. Highly alpha-helical. Also known as the RAEYL motif or the S. pombe Cdc15 N-terminal domain.
Probab=76.86 E-value=14 Score=22.41 Aligned_cols=53 Identities=25% Similarity=0.364 Sum_probs=35.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCCCCcCccCCHHHHHHHHHHHH
Q psy12315 46 LPGISKYFKHASDEESEHAHKLIKYLNKRGGTLKLVDVKAPARQEWGTTEEAFSHALQLE 105 (120)
Q Consensus 46 l~g~a~~f~~~s~eE~~hA~~li~yi~~rGg~v~~~~i~~p~~~~~~~~~~~l~~aL~~E 105 (120)
+.-+..||+++|.=|.++|.+|-+-..+.. ....+ ...+.+...++...+..-
T Consensus 25 ~~~~~~f~~~Ra~iE~eYak~L~kL~~~~~------~~~~~-~~~~~s~~~aw~~~~~e~ 77 (87)
T smart00055 25 LEDLKKFIRERAKIEEEYAKKLQKLSKKLR------AVRDT-ESEYGSLSKSWEVLLSET 77 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh------ccCCC-CCcchhHHHHHHHHHHHH
Confidence 446899999999999999999999877611 11111 124555556666655443
No 63
>PF05974 DUF892: Domain of unknown function (DUF892); InterPro: IPR010287 This domain is found in several hypothetical bacterial proteins of unknown function.; PDB: 4ERU_B 3OGH_A 2GS4_B 2GYQ_B 3HIU_A.
Probab=76.78 E-value=22 Score=24.64 Aligned_cols=65 Identities=8% Similarity=0.093 Sum_probs=55.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Q psy12315 11 HAETEEKINKQINLELYASYVYLSMSAHFDRDVVALPGISKYFKHASDEESEHAHKLIKYLNKRGGTLKL 80 (120)
Q Consensus 11 ~~~~~~~Ln~qi~~El~as~~Yl~~a~~f~~~~~~l~g~a~~f~~~s~eE~~hA~~li~yi~~rGg~v~~ 80 (120)
.+-.+..|.+....|-+....+-.|+.-.. . |.+..-|..+..+.++|..++-+-+...|+.|.-
T Consensus 3 ~~~~~~~L~d~y~aE~q~~~~l~~~~~~a~----~-~~L~~~l~~h~~eT~~q~~rLe~~~~~lg~~p~~ 67 (159)
T PF05974_consen 3 RDLFIDELRDLYSAEKQLLKALPKLAEAAS----S-PELKAALEEHLEETEQQIERLEQIFEALGADPSA 67 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-S----S-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-C
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCC----C-HHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcc
Confidence 445678899999999999999999997776 2 8899999999999999999999999999998863
No 64
>cd07649 F-BAR_GAS7 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Growth Arrest Specific protein 7. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Growth Arrest Specific protein 7 (GAS7) is mainly expressed in the brain and is required for neurite outgrowth. It may also play a role in the protection and migration of embryonic stem cells. Treatment-related acute myeloid leukemia (AML) has been reported resulting from mixed-lineage leukemia (MLL)-GAS7 translocations as a complication of primary cancer treatment. GAS7 contains an N-terminal SH3 domain, followed by a WW domain, and a central F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=76.35 E-value=12 Score=27.82 Aligned_cols=39 Identities=13% Similarity=0.089 Sum_probs=30.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccC
Q psy12315 46 LPGISKYFKHASDEESEHAHKLIKYLNKRGGTLKLVDVK 84 (120)
Q Consensus 46 l~g~a~~f~~~s~eE~~hA~~li~yi~~rGg~v~~~~i~ 84 (120)
...++.||+..|.-|.+.|.+|.+.-..-+|.+.++.+.
T Consensus 21 ~~el~~fl~ERa~IEe~Yak~L~klak~~~~~~e~Gtl~ 59 (233)
T cd07649 21 QKEMAEFIRERIKIEEEYAKNLSKLSQSSLAAQEEGTLG 59 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChHH
Confidence 346999999999999999999999987655555444433
No 65
>PF06175 MiaE: tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE); InterPro: IPR010386 This family consists of several bacterial tRNA-(MSIO[6]A)-hydroxylase (MiaE) proteins. The modified nucleoside 2-methylthio-N-6-isopentenyl adenosine (ms2i6A) is present at position 37 (3' of the anticodon) of tRNAs that read codons beginning with U except tRNA(I,V Ser) in Escherichia coli. Salmonella typhimurium 2-methylthio-cis-ribozeatin (ms2io6A) is found in tRNA, probably in the corresponding species that have ms2i6A in E. coli. The miaE gene is absent in E. coli, a finding consistent with the absence of the hydroxylated derivative of ms2i6A in this species [].; PDB: 2ITB_B.
Probab=75.77 E-value=24 Score=26.51 Aligned_cols=72 Identities=17% Similarity=0.127 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-hhcccccCcC--------------------------------------chhHHHH
Q psy12315 12 AETEEKINKQINLELYASYVYLSM-SAHFDRDVVA--------------------------------------LPGISKY 52 (120)
Q Consensus 12 ~~~~~~Ln~qi~~El~as~~Yl~~-a~~f~~~~~~--------------------------------------l~g~a~~ 52 (120)
..+...|.++.+-|..|+..=+++ ..|....+.+ -+.+..-
T Consensus 26 ~nl~~lL~DHa~CE~KAA~tAm~li~rY~~~~~~~~~ll~~~~py~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~eLv~~ 105 (240)
T PF06175_consen 26 ANLPTLLIDHANCEKKAAQTAMSLIRRYAVDKESGQALLAWLKPYEDFVYRKDGDIQKNQLSKSLQPKSHYPEKEELVDK 105 (240)
T ss_dssp H--HHHHHHHHHHHHHHHHHHHHHHHHTT---------------------------------------------HHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHH
Confidence 345668999999999999988887 4443211111 1223344
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcccccccCC
Q psy12315 53 FKHASDEESEHAHKLIKYLNKRGGTLKLVDVKA 85 (120)
Q Consensus 53 f~~~s~eE~~hA~~li~yi~~rGg~v~~~~i~~ 85 (120)
+-..+.||+.|-++.++-|.+||.. ++.+.+
T Consensus 106 Ms~LarEEL~HFeqVl~im~~RGi~--l~~~~~ 136 (240)
T PF06175_consen 106 MSRLAREELHHFEQVLEIMKKRGIP--LGPDRK 136 (240)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCC--CCCCCc
Confidence 5677999999999999999999954 445444
No 66
>cd00907 Bacterioferritin Bacterioferritin, ferritin-like diiron-binding domain. Bacterioferritins, also known as cytochrome b1, are members of a broad superfamily of ferritin-like diiron-carboxylate proteins. Similar to ferritin in architecture, Bfr forms an oligomer of 24 subunits that assembles to form a hollow sphere with 432 symmetry. Up to 12 heme cofactor groups (iron protoporphyrin IX or coproporphyrin III) are bound between dimer pairs. The role of the heme is unknown, although it may be involved in mediating iron-core reduction and iron release. Each subunit is composed of a four-helix bundle which carries a diiron ferroxidase center; it is here that initial oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical products, and storage of ferric-hydroxyphosphate at the core. Some bacterioferritins are composed of two subunit types, one conferring heme-binding ability (alpha) and the other (beta) best
Probab=74.20 E-value=23 Score=23.67 Aligned_cols=57 Identities=19% Similarity=0.132 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccCcCchhHHHHHHHHHHHHHHHHHHHHHHH
Q psy12315 13 ETEEKINKQINLELYASYVYLSMSAHFDRDVVALPGISKYFKHASDEESEHAHKLIKYL 71 (120)
Q Consensus 13 ~~~~~Ln~qi~~El~as~~Yl~~a~~f~~~~~~l~g~a~~f~~~s~eE~~hA~~li~yi 71 (120)
.+.+.|...+..|-.+...|..+...++ ..+=+..+.+|.....+|.+|...|=+.+
T Consensus 81 ~~~~~l~~~l~~E~~~~~~y~~~~~~A~--~~~D~~t~~~l~~~~~~e~~h~~~l~~~l 137 (153)
T cd00907 81 DVPEMLENDLALEYEAIAALNEAIALCE--EVGDYVSRDLLEEILEDEEEHIDWLETQL 137 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5778999999999999999999998887 44678899999999999999988765544
No 67
>PF00611 FCH: Fes/CIP4, and EFC/F-BAR homology domain; InterPro: IPR001060 The FCH domain is a short conserved region of around 60 amino acids first described as a region of homology between FER and CIP4 proteins []. Many proteins containing an FCH domain are involved in the regulation of cytoskeletal rearrangements, vesicular transport and endocytosis. In the CIP4 protein the FCH domain binds to microtubules []. The FCH domain is always found N-terminally and is followed by a coiled-coil region. Proteins containing an FCH domain can be divided in 3 classes []: A subfamily of protein kinases usually associated with an SH2 domain: Fps/fes (Fujimani poultry sarcoma/feline sarcoma) proto-oncogenes. They are non-receptor protein-tyrosine kinases preferentially expressed in myeloid lineage. The viral oncogene has an unregulated kinase activity which abrogates the need for cytokines and influences differentiation of haematopoietic progenitor cells. Fes related protein (fer). It is an ubiquitously expressed homologue of Fes. Adaptor proteins usually associated with a C-terminal SH3 domain: Schizosaccharomyces pombe CDC15 protein. It mediates cytoskeletal rearrangements required for cytokinesis. It is essential for viability. CD2 cytoplasmic domain binding protein. Mammalian Cdc42-interacting protein 4 (CIP4). It may act as a link between Cdc42 signaling and regulation of the actin cytoskeleton. Mammalian PACSIN proteins. A family of cytoplasmic phosphoproteins playing a role in vesicle formation and transport. A subfamily of Rho-GAP proteins: Mammalian RhoGAP4 proteins. They may down-regulate Rho-like GTPases in hematopoietic cells. Yeast hypothetical protein YBR260C. Caenorhabditis elegans hypothetical protein ZK669.1. ; PDB: 2EFK_A 2EFL_A 2X3W_A 2X3X_C 2X3V_C 3I2W_A 3ABH_B 3Q0K_B 3HAJ_A 3ACO_B ....
Probab=70.31 E-value=21 Score=21.53 Aligned_cols=30 Identities=30% Similarity=0.365 Sum_probs=25.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy12315 46 LPGISKYFKHASDEESEHAHKLIKYLNKRG 75 (120)
Q Consensus 46 l~g~a~~f~~~s~eE~~hA~~li~yi~~rG 75 (120)
+..+..||++.+.-|.++|..|-+.-.+-.
T Consensus 25 ~~~l~~~~keRa~lE~~Yak~L~kl~~~~~ 54 (91)
T PF00611_consen 25 LEELASFFKERASLEEEYAKSLQKLAKKFK 54 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 457999999999999999999988766554
No 68
>PF08066 PMC2NT: PMC2NT (NUC016) domain; InterPro: IPR012588 Exosomes are nano-compartments that function in the degradation or processing of RNA (including mRNA, rRNA, snRNA and snoRNA) [, ]. Exosomes occur in both archaea and eukaryotes, and have a similar overall structure to each other and to bacterial/organelle PNPases (polynucleotide phosphorylases; 2.7.7.8 from EC) [], consisting of a barrel structure composed of a hexameric ring of PH domains that act as a degradation chamber, and an S1-domain/KH-domain containing cap that binds the RNA substrate (and sometimes accessory proteins) in order to regulate and restrict entry into the degradation chamber []. There are two types of exosomes in eukaryotes, cytoplasmic exosomes that are responsible for 3'-5' exoribonuclease degradation of mRNAs, and nuclear exosomes that degrade pre-mRNAs (such as nonsense transcripts) and degrade rRNAs, snRNAs and snoRNAs. Unstructured RNA substrates feed in through the pore made by the S1 domains, are degraded by the PH domain ring, and exit as nucleotides via the PH pore at the opposite end of the barrel [, ]. There are several accessory proteins that help degrade, unwind or polyadenylate RNA substrate before they enter the exosome. This entry represents the N-terminal domain of Rrp6 (exosome component 10 in humans), a nuclear exosome accessory factor that interacts with the bottom of the hexameric PH-ring opposite the cap. Rrp6 functions as a hydrolytic exonuclease, and is homologous to RNase-D in Escherichia coli. More information about these proteins can be found at Protein of the Month: RNA Exosomes [].; GO: 0006396 RNA processing, 0000176 nuclear exosome (RNase complex)
Probab=70.19 E-value=7.8 Score=24.40 Aligned_cols=57 Identities=14% Similarity=0.236 Sum_probs=43.3
Q ss_pred c-hhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCCCCcCccCCHHHHHHHHHH
Q psy12315 46 L-PGISKYFKHASDEESEHAHKLIKYLNKRGGTLKLVDVKAPARQEWGTTEEAFSHALQ 103 (120)
Q Consensus 46 l-~g~a~~f~~~s~eE~~hA~~li~yi~~rGg~v~~~~i~~p~~~~~~~~~~~l~~aL~ 103 (120)
+ |+|++....++..=..-+.++++.+..+++.+...+...+. ..|+.+.++....|+
T Consensus 22 ~dp~f~~~ld~~s~rll~l~n~ll~~~~~~~~~~~~~~~~d~d-~~~~~vvd~~D~LlE 79 (91)
T PF08066_consen 22 FDPEFAESLDEQSQRLLSLINSLLKSAGSKSNISSPDDVDDVD-ERWDSVVDVNDSLLE 79 (91)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCccccHH-HHHHHHHHHHHHHHH
Confidence 6 89999999999999999999999888888777665444442 357777777666554
No 69
>PF00210 Ferritin: Ferritin-like domain; InterPro: IPR008331 Ferritin is one of the major non-haem iron storage proteins in animals, plants, and microorganisms []. It consists of a mineral core of hydrated ferric oxide, and a multi-subunit protein shell that encloses the former and assures its solubility in an aqueous environment. In animals the protein is mainly cytoplasmic and there are generally two or more genes that encode closely related subunits - in mammals there are two subunits which are known as H(eavy) and L(ight). In plants ferritin is found in the chloroplast []. This entry represents the main structural domain of ferritin. The domain is also found in other ferritin-like proteins such as members of the DNA protection during starvation (DPS) family and bacterioferritins.; GO: 0008199 ferric iron binding, 0006879 cellular iron ion homeostasis; PDB: 1N1Q_C 4DYU_E 2YJJ_D 2YJK_B 2VXX_B 3FVB_A 2WLU_A 2XGW_A 2WLA_A 1Z4A_D ....
Probab=69.23 E-value=28 Score=22.45 Aligned_cols=59 Identities=15% Similarity=0.191 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccCcCchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12315 13 ETEEKINKQINLELYASYVYLSMSAHFDRDVVALPGISKYFKHASDEESEHAHKLIKYLNK 73 (120)
Q Consensus 13 ~~~~~Ln~qi~~El~as~~Yl~~a~~f~~~~~~l~g~a~~f~~~s~eE~~hA~~li~yi~~ 73 (120)
.+.+.|...+..|-.....|..+...++. .+=+....|+...-.++..|...+-+++..
T Consensus 80 ~~~~~l~~~l~~e~~~~~~~~~l~~~a~~--~~D~~t~~~~~~~l~~~~~~~~~l~~~l~~ 138 (142)
T PF00210_consen 80 DPREALEAALEDEKEIIEEYRELIKLAEK--EGDPETADFLDEFLEEEEKHIWMLQAHLTN 138 (142)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHH--TTSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67889999999999999999999999983 356889999999999999999988888764
No 70
>cd07657 F-BAR_Fes_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) and Fer (Fes related) tyrosine kinases. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), and Fer (Fes related) are cytoplasmic (or nonreceptor) tyrosine kinases that play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Although Fes and Fer show redundancy in their biological functions, they show differences in their expression patterns. Fer is ubiquitously expressed while Fes is expressed predominantly in myeloid and endothelial cells. Fes and Fer contain an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a posit
Probab=69.02 E-value=21 Score=26.53 Aligned_cols=28 Identities=25% Similarity=0.345 Sum_probs=24.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12315 46 LPGISKYFKHASDEESEHAHKLIKYLNK 73 (120)
Q Consensus 46 l~g~a~~f~~~s~eE~~hA~~li~yi~~ 73 (120)
|..+.+||++.|.=|.+.|.+|-+-..+
T Consensus 21 Le~i~~F~reRa~iE~EYA~~L~~L~kq 48 (237)
T cd07657 21 LETMKKYMAKRAKSDREYASTLGSLANQ 48 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5678999999999999999999877655
No 71
>PRK10635 bacterioferritin; Provisional
Probab=67.56 E-value=39 Score=23.50 Aligned_cols=60 Identities=20% Similarity=0.100 Sum_probs=51.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12315 11 HAETEEKINKQINLELYASYVYLSMSAHFDRDVVALPGISKYFKHASDEESEHAHKLIKYLN 72 (120)
Q Consensus 11 ~~~~~~~Ln~qi~~El~as~~Yl~~a~~f~~~~~~l~g~a~~f~~~s~eE~~hA~~li~yi~ 72 (120)
.+.+.+.|..-+..|..+.-.|.-+..+|.. .+=+.-..+|...-.+|-+|...|-.-+.
T Consensus 80 g~~v~eml~~dl~~E~~ai~~y~e~i~~a~~--~~D~~s~~ll~~iL~dEe~H~~~le~~l~ 139 (158)
T PRK10635 80 GEDVEEMLRSDLRLELEGAKDLREAIAYADS--VHDYVSRDMMIEILADEEGHIDWLETELD 139 (158)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578899999999999999999999999994 35677889999999999999988766554
No 72
>cd07672 F-BAR_PSTPIP2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 2. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 2 (PSTPIP2), also known as Macrophage Actin-associated tYrosine Phosphorylated protein (MAYP), is mostly expressed in hematopoietic cells but is also expressed in the brain. It is involved in regulating cell adhesion and motility. Mutations in the gene encoding murine PSTPIP2 can cause autoinflammatory disorders such as chronic multifocal osteomyelitis and macrophage autoinflammatory disease. PSTPIP2 contains an N-terminal F-BAR domain and lacks the PEST motifs and SH3 domain that are found in PSTPIP1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They ca
Probab=67.39 E-value=25 Score=26.16 Aligned_cols=33 Identities=15% Similarity=0.252 Sum_probs=26.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHh-cCCcc
Q psy12315 46 LPGISKYFKHASDEESEHAHKLIKYLNK-RGGTL 78 (120)
Q Consensus 46 l~g~a~~f~~~s~eE~~hA~~li~yi~~-rGg~v 78 (120)
+.-+..|++..|.=|.+.|.+|.+.-.+ .+|.+
T Consensus 21 ~~el~~f~kERA~IE~~YaK~L~kLskk~~~g~~ 54 (240)
T cd07672 21 CKEFEDFLKERASIEEKYGKELLNLSKKKPCGQT 54 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 4468999999999999999999998876 44433
No 73
>cd07671 F-BAR_PSTPIP1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 1. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 1 (PSTPIP1), also known as CD2 Binding Protein 1 (CD2BP1), is mainly expressed in hematopoietic cells. It is a binding partner of the cell surface receptor CD2 and PTP-PEST, a tyrosine phosphatase which functions in cell motility and Rac1 regulation. It also plays a role in the activation of the Wiskott-Aldrich syndrome protein (WASP), which couples actin rearrangement and T cell activation. Mutations in the gene encoding PSTPIP1 cause the autoinflammatory disorder known as PAPA (pyogenic sterile arthritis, pyoderma gangrenosum, and acne) syndrome. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain. F-BAR
Probab=58.79 E-value=40 Score=25.17 Aligned_cols=33 Identities=18% Similarity=0.393 Sum_probs=28.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc
Q psy12315 47 PGISKYFKHASDEESEHAHKLIKYLNKRGGTLK 79 (120)
Q Consensus 47 ~g~a~~f~~~s~eE~~hA~~li~yi~~rGg~v~ 79 (120)
.-+..||+..+.=|.++|.+|.+.-.+-+|.+.
T Consensus 22 ~el~~f~keRa~iE~~Yak~L~kl~kk~~~~~e 54 (242)
T cd07671 22 KDVEELLKQRAQAEERYGKELVQIARKAGGQTE 54 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCccc
Confidence 358899999999999999999999988776543
No 74
>PF10097 DUF2335: Predicted membrane protein (DUF2335); InterPro: IPR019284 This entry is represented by Xylella phage Xfas53, Orf42. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=57.44 E-value=33 Score=19.31 Aligned_cols=29 Identities=34% Similarity=0.457 Sum_probs=25.2
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12315 45 ALPGISKYFKHASDEESEHAHKLIKYLNK 73 (120)
Q Consensus 45 ~l~g~a~~f~~~s~eE~~hA~~li~yi~~ 73 (120)
-+||.+...-..+..|..|-..+-+-.++
T Consensus 12 i~Pg~aerI~~mae~eq~hR~~~e~~~l~ 40 (50)
T PF10097_consen 12 ILPGAAERIFAMAEKEQEHRHELEKKALK 40 (50)
T ss_pred HCcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999988666544
No 75
>COG4445 MiaE Hydroxylase for synthesis of 2-methylthio-cis-ribozeatin in tRNA [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]
Probab=56.66 E-value=72 Score=22.95 Aligned_cols=64 Identities=17% Similarity=0.251 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccccCcCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCCC
Q psy12315 17 KINKQINLELYASYVYLSMSAHFDRDVVALPGISKYFKHASDEESEHAHKLIKYLNKRGGTLKLVDVKAP 86 (120)
Q Consensus 17 ~Ln~qi~~El~as~~Yl~~a~~f~~~~~~l~g~a~~f~~~s~eE~~hA~~li~yi~~rGg~v~~~~i~~p 86 (120)
.|-++..=|+.|+.+-+.+-.-|.. -..+-.-+-..+.||..|-.+..+.+..|| +-+.+|+++
T Consensus 32 lLlDH~~CE~KAa~tAl~li~kY~~----~~~lv~km~~larEEL~HFeqV~eilq~Rn--I~~~~i~as 95 (203)
T COG4445 32 LLLDHLHCELKAAQTALNLIRKYPS----NTDLVDKMVLLAREELHHFEQVLEILQARN--IPYVPIPAS 95 (203)
T ss_pred ehhhhHHHHHHHHHHHHHHHHHccc----hHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CccccCCcc
Confidence 3667888899999887766555553 246778888999999999999999999999 444566655
No 76
>cd07658 F-BAR_NOSTRIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Nitric Oxide Synthase TRaffic INducer (NOSTRIN). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Nitric Oxide Synthase TRaffic INducer (NOSTRIN) is expressed in endothelial and epithelial cells and is involved in the regulation, trafficking and targeting of endothelial NOS (eNOS). NOSTRIN facilitates the endocytosis of eNOS by coordinating the functions of dynamin and the Wiskott-Aldrich syndrome protein (WASP). Increased expression of NOSTRIN may be correlated to preeclampsia. NOSTRIN contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. The F-BAR domain of NOSTRIN is necessary and sufficient fo
Probab=56.32 E-value=53 Score=24.32 Aligned_cols=28 Identities=18% Similarity=0.160 Sum_probs=24.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12315 46 LPGISKYFKHASDEESEHAHKLIKYLNK 73 (120)
Q Consensus 46 l~g~a~~f~~~s~eE~~hA~~li~yi~~ 73 (120)
...+..||+..|.-|.+.|..|.+.-.+
T Consensus 21 ckel~~f~kERa~IE~~YAK~L~kLa~k 48 (239)
T cd07658 21 CKELATVLQERAELELNYAKGLSKLSGK 48 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3469999999999999999999998765
No 77
>cd07678 F-BAR_FCHSD1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH and double SH3 domains 1 (FCHSD1). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FCH and double SH3 domains 1 (FCHSD1) contains an N-terminal F-BAR domain and two SH3 domains at the C-terminus. It has been characterized only in silico, and its biological function is still unknown. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=55.76 E-value=64 Score=24.57 Aligned_cols=45 Identities=20% Similarity=0.155 Sum_probs=31.8
Q ss_pred HHhhcccccCcCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Q psy12315 34 SMSAHFDRDVVALPGISKYFKHASDEESEHAHKLIKYLNKRGGTL 78 (120)
Q Consensus 34 ~~a~~f~~~~~~l~g~a~~f~~~s~eE~~hA~~li~yi~~rGg~v 78 (120)
-+..|....---|..+..|+++.+.-|.+.|.+|-+-...-.+..
T Consensus 9 ~L~~~~~~~~~~le~~~~f~k~R~~iE~eYa~~L~~L~k~~~~k~ 53 (263)
T cd07678 9 ILQTKQQRDAELLEDIRSYSKQRAAIEREYGQALQRLASQFLKRD 53 (263)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 344444433334778999999999999999999887655554433
No 78
>PF11553 DUF3231: Protein of unknown function (DUF3231); InterPro: IPR021617 This bacterial family of proteins has no known function. ; PDB: 2RBD_B.
Probab=53.62 E-value=71 Score=21.98 Aligned_cols=41 Identities=17% Similarity=0.233 Sum_probs=28.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCCC
Q psy12315 46 LPGISKYFKHASDEESEHAHKLIKYLNKRGGTLKLVDVKAP 86 (120)
Q Consensus 46 l~g~a~~f~~~s~eE~~hA~~li~yi~~rGg~v~~~~i~~p 86 (120)
.+-+..+|.+...+..+-..++.+++..+|--...+.++.|
T Consensus 123 R~Dl~~~f~~~~~~~~~~~~~~~~l~~~KGwl~~pP~~~~~ 163 (166)
T PF11553_consen 123 RNDLRAFFMKFLMEALELYDKIVKLMKEKGWLERPPYIPDP 163 (166)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHTT------B----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCCCCCCCCC
Confidence 44589999999999999999999999999987776666665
No 79
>PF08463 EcoEI_R_C: EcoEI R protein C-terminal; InterPro: IPR013670 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type I restriction endonucleases are components of prokaryotic DNA restriction-modification mechanisms that protects the organism against invading foreign DNA. Type I enzymes have three different subunits subunits - M (modification), S (specificity) and R (restriction) - that form multifunctional enzymes with restriction (3.1.21.3 from EC), methylase (2.1.1.72 from EC) and ATPase activities [, ]. The S subunit is required for both restriction and modification and is responsible for recognition of the DNA sequence specific for the system. The M subunit is necessary for modification, and the R subunit is required for restriction. These enzymes use S-Adenosyl-L-methionine (AdoMet) as the methyl group donor in the methylation reaction, and have a requirement for ATP. They recognise asymmetric DNA sequences split into two domains of specific sequence, one 3-4 bp long and another 4-5 bp long, separated by a nonspecific spacer 6-8 bp in length. Cleavage occurs a considerable distance from the recognition sites, rarely less than 400 bp away and up to 7000 bp away. Adenosyl residues are methylated, one on each strand of the recognition sequence. These enzymes are widespread in eubacteria and archaea. In enteric bacteria they have been subdivide into four families: types IA, IB, IC and ID. Type III restriction endonucleases (3.1.21.5 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. Type III enzymes are hetero-oligomeric, multifunctional proteins composed of two subunits, Res and Mod. The Mod subunit recognises the DNA sequence specific for the system and is a modification methyltransferase; as such it is functionally equivalent to the M and S subunits of type I restriction endonuclease. Res is required for restriction, although it has no enzymatic activity on its own. Type III enzymes recognise short 5-6 bp long asymmetric DNA sequences and cleave 25-27 bp downstream to leave short, single-stranded 5' protrusions. They require the presence of two inversely oriented unmethylated recognition sites for restriction to occur. These enzymes methylate only one strand of the DNA, at the N-6 position of adenosyl residues, so newly replicated DNA will have only one strand methylated, which is sufficient to protect against restriction. Type III enzymes belong to the beta-subfamily of N6 adenine methyltransferases, containing the nine motifs that characterise this family, including motif I, the AdoMet binding pocket (FXGXG), and motif IV, the catalytic region (S/D/N (PP) Y/F) [, ]. This entry represents the C-terminal domain found in both the R subunit of type I enzymes and the Res subunit of type III enzymes. The type I enzyme represented is EcoEI, which recognises 5'-GAGN(7)ATGC-3; the R protein (HsdR) is required for both nuclease and ATPase activity [, ]. ; GO: 0003677 DNA binding, 0003824 catalytic activity, 0006304 DNA modification
Probab=52.69 E-value=70 Score=21.81 Aligned_cols=68 Identities=15% Similarity=0.301 Sum_probs=40.9
Q ss_pred hHHHHHHHHH--HHHHHHHHHHHHHHHhcCCcccccccCCCCcCccCCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12315 48 GISKYFKHAS--DEESEHAHKLIKYLNKRGGTLKLVDVKAPARQEWGTTEEAFSHALQLEKDVNQVIIYFFT 117 (120)
Q Consensus 48 g~a~~f~~~s--~eE~~hA~~li~yi~~rGg~v~~~~i~~p~~~~~~~~~~~l~~aL~~Ek~v~~~l~~l~~ 117 (120)
-|++|+..+. .+.++=-..+++++...|..- ......|.-...+++.. +...+.-...+.+.+.+|.+
T Consensus 92 ~~~~~l~~~~~~~~Q~~~L~~i~~~~~~~G~~~-~~~l~~~pF~~~G~~~~-~~~~Fg~~~~l~~~~~~l~~ 161 (164)
T PF08463_consen 92 AFSKFLNQHQFNAEQREFLERILDYYAQNGIIE-PEDLKEPPFSDLGGPGG-IIRVFGGKEQLDEILNELNK 161 (164)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHhCccc-HHHhCCCchhhcCCHHH-HHHHcCCHHHHHHHHHHHHh
Confidence 5778887777 888888888999998888655 66666664333333222 22223222255555555544
No 80
>cd07681 F-BAR_PACSIN3 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 3 (PACSIN3). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 3 or Syndapin III is expressed ubiquitously and regulates glucose uptake in adipocytes through its role in GLUT1 trafficking. It also modulates the subcellular localization and stimulus-specific function of the cation channel TRPV4. PACSIN 3 contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to
Probab=50.42 E-value=53 Score=24.93 Aligned_cols=50 Identities=24% Similarity=0.377 Sum_probs=36.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCCCCcCccCCHHHHHHHHHH
Q psy12315 47 PGISKYFKHASDEESEHAHKLIKYLNKRGGTLKLVDVKAPARQEWGTTEEAFSHALQ 103 (120)
Q Consensus 47 ~g~a~~f~~~s~eE~~hA~~li~yi~~rGg~v~~~~i~~p~~~~~~~~~~~l~~aL~ 103 (120)
..+..||+..|.=|...|.+|.+.-.+-+|.+..+ | .++++..++...+.
T Consensus 22 ~el~~f~~eRA~IE~~YAk~L~~lakk~~~~~e~g----~---eyGTL~~sw~~~~~ 71 (258)
T cd07681 22 NDLVSCFQERAKIEKGYAQQLSDWARKWRGIVEKG----P---QYGTLEKAWHAFLT 71 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhcc----c---ccChHHHHHHHHHH
Confidence 46889999999999999999999988766655432 1 35555555554443
No 81
>PRK13456 DNA protection protein DPS; Provisional
Probab=50.19 E-value=96 Score=22.46 Aligned_cols=57 Identities=16% Similarity=0.077 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccCcCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12315 13 ETEEKINKQINLELYASYVYLSMSAHFDRDVVALPGISKYFKHASDEESEHAHKLIKYLN 72 (120)
Q Consensus 13 ~~~~~Ln~qi~~El~as~~Yl~~a~~f~~~~~~l~g~a~~f~~~s~eE~~hA~~li~yi~ 72 (120)
.+.+.|...+..|-.|...|.-+-.++. +.+-.... ....--.+|.+|+..|.+++.
T Consensus 107 dv~~mL~~~L~AEr~AI~~Y~eii~~~~--~kDp~T~~-l~~~IL~dE~eH~~dl~~lL~ 163 (186)
T PRK13456 107 DPKEILKVLLEAERCAIRTYTEICDMTA--GKDPRTYD-LALAILQEEIEHEAWFSELLG 163 (186)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCccHHH-HHHHHHHHHHHHHHHHHHHHh
Confidence 6899999999999999999999999998 44444333 344477889999999999985
No 82
>cd07655 F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce
Probab=48.92 E-value=1.1e+02 Score=22.83 Aligned_cols=33 Identities=18% Similarity=0.219 Sum_probs=28.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Q psy12315 46 LPGISKYFKHASDEESEHAHKLIKYLNKRGGTL 78 (120)
Q Consensus 46 l~g~a~~f~~~s~eE~~hA~~li~yi~~rGg~v 78 (120)
+..+..||++.|.=|.++|.+|-+.-.+-.+.+
T Consensus 21 ~~el~~f~kERa~IE~~Yak~L~kLakk~~~~~ 53 (258)
T cd07655 21 CDDLMKMVQERAEIEKAYAKKLKEWAKKWRDLI 53 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 457899999999999999999999887755444
No 83
>cd07650 F-BAR_Syp1p_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of yeast Syp1 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Syp1p is associated with septins, a family of GTP-binding proteins that serve as elements of septin filaments, which are required for cell morphogenesis and division. Syp1p regulates cell-cycle dependent septin cytoskeletal dynamics in yeast. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCH domain Only (FCHO) proteins and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=47.13 E-value=77 Score=23.28 Aligned_cols=28 Identities=11% Similarity=0.203 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy12315 48 GISKYFKHASDEESEHAHKLIKYLNKRG 75 (120)
Q Consensus 48 g~a~~f~~~s~eE~~hA~~li~yi~~rG 75 (120)
-++.||+..|.=|..+|.+|-+-....+
T Consensus 23 el~~~~kERa~IE~~Yak~L~kLakk~~ 50 (228)
T cd07650 23 ELADWLQERRRLERQYVQGLRKLARRNE 50 (228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 5899999999999999999999888764
No 84
>cd01044 Ferritin_CCC1_N Ferritin-CCC1, N-terminal ferritin-like diiron-binding domain. Ferritin-like N-terminal domain present in an uncharacterized family of proteins found in bacteria and archaea. These proteins also have a C-terminal CCC1-like transmembrane domain and are thought to be involved in iron and/or manganese transport. This domain has the conserved residues of a diiron center found in other ferritin-like proteins.
Probab=45.40 E-value=85 Score=20.48 Aligned_cols=46 Identities=22% Similarity=0.096 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccCcCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12315 16 EKINKQINLELYASYVYLSMSAHFDRDVVALPGISKYFKHASDEESEHAHKLIKYLN 72 (120)
Q Consensus 16 ~~Ln~qi~~El~as~~Yl~~a~~f~~~~~~l~g~a~~f~~~s~eE~~hA~~li~yi~ 72 (120)
..+.-.+..|-.+...|.-++.. -..+.....+|+.|...|.+.+.
T Consensus 79 ~~l~~~~~~E~~ai~~Y~~~~~~-----------~~~~~~Ii~dE~~H~~~L~~~~~ 124 (125)
T cd01044 79 FVLKLLERGEERAIEKYDRLLEE-----------RPELKEIIADELEHEEVLIALLD 124 (125)
T ss_pred HHHHHHHHhHHhhHhhHHhhhhh-----------hHHHHHHHHHHHHHHHHHHHhhh
Confidence 35556667888888888887755 33668899999999999987653
No 85
>cd01050 Acyl_ACP_Desat Acyl ACP desaturase, ferritin-like diiron-binding domain. Acyl-Acyl Carrier Protein Desaturase (Acyl_ACP_Desat) is a mu-oxo-bridged diiron-carboxylate enzyme, which belongs to a broad superfamily of ferritin-like proteins and catalyzes the NADPH and O2-dependent formation of a cis-double bond in acyl-ACPs. Acyl-ACP desaturases are found in higher plants and a few bacterial species (Mycobacterium tuberculosis, M. leprae, M. avium and Streptomyces avermitilis, S. coelicolor). In plants, Acyl-ACP desaturase is a plastid-localized, covalently ACP linked, soluble desaturase that introduces the first double bound into saturated fatty acids, resulting in the corresponding monounsaturated fatty acid. Members of this class of soluble desaturases are specific for a particular substrate chain length and introduce the double bond between specific carbon atoms. For example, delta 9 stearoyl-ACP is specific for stearic acid and introduces a double bond between carbon 9 and 1
Probab=44.97 E-value=1.5e+02 Score=23.06 Aligned_cols=108 Identities=15% Similarity=0.098 Sum_probs=66.3
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHH-HhhcccccCcCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCCC
Q psy12315 8 QNFHAETEEKINKQINLELYASYVYLS-MSAHFDRDVVALPGISKYFKHASDEESEHAHKLIKYLNKRGGTLKLVDVKAP 86 (120)
Q Consensus 8 ~~~~~~~~~~Ln~qi~~El~as~~Yl~-~a~~f~~~~~~l~g~a~~f~~~s~eE~~hA~~li~yi~~rGg~v~~~~i~~p 86 (120)
..+++....+|---.-.| .+.-.|.+ ++.+|..++..-+++++|...=..||..|+.-|-+|+..- |.++...+...
T Consensus 54 ~~L~~~~~~~l~~~~itE-d~LP~Y~~~L~~~f~~~~~~~~~w~~w~~~WtaEE~rHg~aL~~YL~~s-g~vdp~~le~~ 131 (297)
T cd01050 54 AELPDDARVALVGNLLTE-EALPTYHSMLNRLFGLDDESPTAWARWVRRWTAEENRHGDLLNKYLYLT-GRVDPRALERT 131 (297)
T ss_pred ccCCHHHHHHHHHHHHHh-hccHHHHHHHHHHcCcccccccHHHHHHHHHhHHHHHHHHHHHHHHHHh-CCCCHHHHHHH
Confidence 345666666665555555 33334443 3444443222347899999999999999999999999885 44544333321
Q ss_pred C---------cCccCCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12315 87 A---------RQEWGTTEEAFSHALQLEKDVNQVIIYFFT 117 (120)
Q Consensus 87 ~---------~~~~~~~~~~l~~aL~~Ek~v~~~l~~l~~ 117 (120)
. .+.-.++...|-...-.|....-...++-+
T Consensus 132 ~~~~~~~G~~~~~~~~~~~~~~y~~fqE~aT~v~y~nl~~ 171 (297)
T cd01050 132 RQYLIGSGFDPGTDNSPYRGFVYTSFQELATRISHRNTAR 171 (297)
T ss_pred HHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 001124557777777778766666665543
No 86
>PRK13654 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=44.78 E-value=1.6e+02 Score=23.47 Aligned_cols=97 Identities=18% Similarity=0.141 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccCcCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCCCCcCccC
Q psy12315 13 ETEEKINKQINLELYASYVYLSMSAHFDRDVVALPGISKYFKHASDEESEHAHKLIKYLNKRGGTLKLVDVKAPARQEWG 92 (120)
Q Consensus 13 ~~~~~Ln~qi~~El~as~~Yl~~a~~f~~~~~~l~g~a~~f~~~s~eE~~hA~~li~yi~~rGg~v~~~~i~~p~~~~~~ 92 (120)
..++-|-.-.+.|+..-..|-=++.-.+.. =|-++..|.-.|-+|-.||--|=+=+.+-|-.++++-+.+...-.|=
T Consensus 83 ~FidFLerSctaEFSGflLYKEl~rrlk~~---nP~lae~F~lMaRDEARHAGFlNkam~df~l~lDLgfLtk~k~YTfF 159 (355)
T PRK13654 83 EFIDFLERSCTAEFSGFLLYKELSRRLKDR---NPLLAELFQLMARDEARHAGFLNKAMKDFGLSLDLGFLTKKKKYTFF 159 (355)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHhcccc---CcHHHHHHHHHhhhHHHHhhhHHHHHHHcCccccchhhccCCceeee
Confidence 468889999999999999999999888733 48899999999999999999999999999999999988876433333
Q ss_pred CHHHHHHHHHHHHHHHHHHH
Q psy12315 93 TTEEAFSHALQLEKDVNQVI 112 (120)
Q Consensus 93 ~~~~~l~~aL~~Ek~v~~~l 112 (120)
.|.=++-...--||.-=..+
T Consensus 160 ~PkfIfYatYLSEKIGYwRY 179 (355)
T PRK13654 160 PPKFIFYATYLSEKIGYWRY 179 (355)
T ss_pred CcceeeehhHhHhhhhHHHH
Confidence 34445555555555433333
No 87
>PRK07209 ribonucleotide-diphosphate reductase subunit beta; Validated
Probab=44.76 E-value=1.2e+02 Score=23.90 Aligned_cols=80 Identities=16% Similarity=0.184 Sum_probs=50.2
Q ss_pred HHHHHHHHHhhcc--cccCcCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCCCCcCccCCHHHHHHHHHHH
Q psy12315 27 YASYVYLSMSAHF--DRDVVALPGISKYFKHASDEESEHAHKLIKYLNKRGGTLKLVDVKAPARQEWGTTEEAFSHALQL 104 (120)
Q Consensus 27 ~as~~Yl~~a~~f--~~~~~~l~g~a~~f~~~s~eE~~hA~~li~yi~~rGg~v~~~~i~~p~~~~~~~~~~~l~~aL~~ 104 (120)
...+.|-+.+..+ .+. --++|++.-.+--+.+|.-|..-.+..++..-. ..+.+-.+. .-..+.+++..|.++
T Consensus 214 EGi~FysgFa~~~~l~r~-g~M~G~~~~i~~I~RDE~~H~~f~~~l~~~l~~--e~p~~~~~~--~~~~v~~l~~eav~~ 288 (369)
T PRK07209 214 EGIFFYVGFTQILSLGRQ-NKMTGIAEQYQYILRDESMHLNFGIDLINQIKL--ENPHLWTAE--FQAEIRELIKEAVEL 288 (369)
T ss_pred HHHHHHHHHHHHHHhhhc-CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCcccccHH--HHHHHHHHHHHHHHH
Confidence 4444554444444 443 369999999999999999999766655554321 111111110 112477899999999
Q ss_pred HHHHHHH
Q psy12315 105 EKDVNQV 111 (120)
Q Consensus 105 Ek~v~~~ 111 (120)
|+.-...
T Consensus 289 E~~~~~~ 295 (369)
T PRK07209 289 EYRYARD 295 (369)
T ss_pred HHHHHHH
Confidence 9886553
No 88
>TIGR00754 bfr bacterioferritin. Bacterioferritin is a homomultimer most species. In Neisseria gonorrhoeae, Synechocystis PCC6803, Magnetospirillum magnetotacticum, and Pseudomonas aeruginosa, two types of subunit are found in a heteromultimeric complex, with each species having one member of each type. At present, both types of subunit are including in this single model.
Probab=44.06 E-value=1e+02 Score=20.93 Aligned_cols=59 Identities=19% Similarity=0.104 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12315 12 AETEEKINKQINLELYASYVYLSMSAHFDRDVVALPGISKYFKHASDEESEHAHKLIKYLN 72 (120)
Q Consensus 12 ~~~~~~Ln~qi~~El~as~~Yl~~a~~f~~~~~~l~g~a~~f~~~s~eE~~hA~~li~yi~ 72 (120)
..+.+.|...+..|-.++..|.-+...+. +.+=++...+|.....+|-+|+..|-.++.
T Consensus 81 ~~~~e~l~~~l~~E~~~~~~~~e~i~~A~--~~~D~~t~~ll~~~i~eee~h~~~l~~~l~ 139 (157)
T TIGR00754 81 ETVREMLEADLALELDVLNRLKEAIAYAE--EVRDYVSRDLLEEILEDEEEHIDWLETQLE 139 (157)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678899999999999999999998887 456789999999999999999988877765
No 89
>COG2833 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=44.03 E-value=1.4e+02 Score=22.66 Aligned_cols=70 Identities=20% Similarity=0.233 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccCcCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCCCC
Q psy12315 13 ETEEKINKQINLELYASYVYLSMSAHFDRDVVALPGISKYFKHASDEESEHAHKLIKYLNKRGGTLKLVDVKAPA 87 (120)
Q Consensus 13 ~~~~~Ln~qi~~El~as~~Yl~~a~~f~~~~~~l~g~a~~f~~~s~eE~~hA~~li~yi~~rGg~v~~~~i~~p~ 87 (120)
--...|..-.+.||+|.+.=|-.++=|. ++.+.=+-.|+ +-|.||-.|-.-+-+++...| ...++.++.+
T Consensus 75 g~aallHAiAHIEfNAInLaLDa~~RF~--~~p~~F~~dWm-~VA~EE~~HF~Ll~~~L~~LG--~~YGDfpaHd 144 (268)
T COG2833 75 GRAALLHAIAHIEFNAINLALDAVYRFA--PLPLQFYDDWM-RVADEEAKHFRLLRERLKSLG--YDYGDFPAHD 144 (268)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHhc--CCcHHHHHHHH-HHHHHHHHHHHHHHHHHHHhC--CCcCCCcccc
Confidence 4467788889999999999999999999 65665444444 468999999999999999999 6667777763
No 90
>CHL00185 ycf59 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=43.86 E-value=1.6e+02 Score=23.35 Aligned_cols=100 Identities=18% Similarity=0.100 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccCcCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCCCCcCccC
Q psy12315 13 ETEEKINKQINLELYASYVYLSMSAHFDRDVVALPGISKYFKHASDEESEHAHKLIKYLNKRGGTLKLVDVKAPARQEWG 92 (120)
Q Consensus 13 ~~~~~Ln~qi~~El~as~~Yl~~a~~f~~~~~~l~g~a~~f~~~s~eE~~hA~~li~yi~~rGg~v~~~~i~~p~~~~~~ 92 (120)
..++-|-.-.+.|+..-..|-=++.-.+.. =|-++..|.-.|-+|-.||--+=+=+.+-|-.++++-+.+...-.|=
T Consensus 79 ~FidFLerScTaEFSGflLYKEl~rrlk~~---nP~lae~F~lMaRDEARHAGFlNkam~df~l~lDLgfLtk~rkYTfF 155 (351)
T CHL00185 79 LFVEFLERSCTAEFSGFLLYKELSRKLKDK---NPLLAEGFLLMSRDEARHAGFLNKAMSDFNLSLDLGFLTKSRKYTFF 155 (351)
T ss_pred HHHHHHHHHhhhhhhhhHHHHHHHHHhccC---CcHHHHHHHHHhhhhHHHhhhHHHHHHHcCccccchhhccCCceeee
Confidence 368889999999999999999999888732 57899999999999999999999999999999999998876543333
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHH
Q psy12315 93 TTEEAFSHALQLEKDVNQVIIYF 115 (120)
Q Consensus 93 ~~~~~l~~aL~~Ek~v~~~l~~l 115 (120)
.|.=++-...--||.-=..+-.+
T Consensus 156 ~PkfI~YAtYLSEKIGYwRYItI 178 (351)
T CHL00185 156 SPKFIFYATYLSEKIGYWRYITI 178 (351)
T ss_pred cccceehhhHHHhhhhhhHHhHH
Confidence 45555666666665544333333
No 91
>PRK13966 nrdF2 ribonucleotide-diphosphate reductase subunit beta; Provisional
Probab=42.17 E-value=91 Score=24.23 Aligned_cols=64 Identities=22% Similarity=0.193 Sum_probs=43.5
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCCCCcCcc-CCHHHHHHHHHHHHHHHHHHHH
Q psy12315 45 ALPGISKYFKHASDEESEHAHKLIKYLNKRGGTLKLVDVKAPARQEW-GTTEEAFSHALQLEKDVNQVII 113 (120)
Q Consensus 45 ~l~g~a~~f~~~s~eE~~hA~~li~yi~~rGg~v~~~~i~~p~~~~~-~~~~~~l~~aL~~Ek~v~~~l~ 113 (120)
.++|++.-++--+.+|.-|. .+.-++...+- -..+.+..+ +. ....+++..|.++|++-+..+.
T Consensus 182 km~g~~~~i~~I~RDE~lH~-~f~~~l~~~~~-~~~~~~~~~---~~~~~i~~l~~~av~~E~e~~~~~~ 246 (324)
T PRK13966 182 KLTNTADMIRLIIRDEAVHG-YYIGYKFQRGL-ALVDDVTRA---ELKDYTYELLFELYDNEVEYTQDLY 246 (324)
T ss_pred CCCcHHHHHHHHHHhHHHHH-HHHHHHHHHHH-HhCChhhHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999998 55555555321 111111111 11 2367899999999999777553
No 92
>PRK10304 ferritin; Provisional
Probab=41.36 E-value=1.2e+02 Score=21.13 Aligned_cols=61 Identities=11% Similarity=0.081 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccCcCchhHHH---HHHHHHHHHHHHHHHHHHHHHhcC
Q psy12315 13 ETEEKINKQINLELYASYVYLSMSAHFDRDVVALPGISK---YFKHASDEESEHAHKLIKYLNKRG 75 (120)
Q Consensus 13 ~~~~~Ln~qi~~El~as~~Yl~~a~~f~~~~~~l~g~a~---~f~~~s~eE~~hA~~li~yi~~rG 75 (120)
.+.+.+...+..|..++..|..+...|... +=..... ||-+.-.||-.|+..+++.+..-|
T Consensus 82 s~~e~~~~~l~~E~~vt~~i~~l~~~A~~~--~D~~t~~fl~~fl~EQveEe~~~~~l~~~l~~~~ 145 (165)
T PRK10304 82 SLDELFQETYKHEQLITQKINELAHAAMTN--QDYPTFNFLQWYVSEQHEEEKLFKSIIDKLSLAG 145 (165)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 478899999999999999999999998853 3334444 444444458999999999888766
No 93
>cd07656 F-BAR_srGAP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Slit-Robo GTPase Activating Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Slit-Robo GTPase Activating Proteins (srGAPs) are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. Vertebrates contain three isoforms of srGAPs, all of which are expressed during embryonic and early development in the nervous system but with different localization and timing. srGAPs contain an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=38.93 E-value=1.6e+02 Score=21.89 Aligned_cols=33 Identities=21% Similarity=0.364 Sum_probs=27.0
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q psy12315 45 ALPGISKYFKHASDEESEHAHKLIKYLNKRGGT 77 (120)
Q Consensus 45 ~l~g~a~~f~~~s~eE~~hA~~li~yi~~rGg~ 77 (120)
-|..+..||++.|.-|.+.|..|-+--......
T Consensus 20 lLed~~~F~r~RaeIE~EYs~~L~kL~k~~~~K 52 (241)
T cd07656 20 LLADLQDYFRRRAEIELEYSRSLEKLADRFSSK 52 (241)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 466799999999999999999998776654433
No 94
>cd01047 ACSF Aerobic Cyclase System Fe-containing subunit (ACSF), ferritin-like diiron-binding domain. Aerobic Cyclase System, Fe-containing subunit (ACSF) is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrivivax gelatinosus acsF codes for a conserved, putative binuclear iron-cluster-containing protein involved in aerobic oxidative cyclization of Mg-protoporphyrin IX monomethyl ester. AcsF and homologs have a leucine zipper and two copies of the conserved glutamate and histidine residues predicted to act as ligands for iron in the Ex(29-35)DExRH motifs. Several homologs of AcsF are found in a wide range of photosynthetic organisms, including Chlamydomonas reinhardtii Crd1 and Pharbitis nil PNZIP, suggesting that this aerobic oxidative cyclization mechanism is conserved from bacteria to plants.
Probab=38.90 E-value=1.9e+02 Score=22.71 Aligned_cols=98 Identities=16% Similarity=0.110 Sum_probs=76.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCCCCcCc
Q psy12315 11 HAETEEKINKQINLELYASYVYLSMSAHFDRDVVALPGISKYFKHASDEESEHAHKLIKYLNKRGGTLKLVDVKAPARQE 90 (120)
Q Consensus 11 ~~~~~~~Ln~qi~~El~as~~Yl~~a~~f~~~~~~l~g~a~~f~~~s~eE~~hA~~li~yi~~rGg~v~~~~i~~p~~~~ 90 (120)
.+..++-|-.-.+.|+..-..|-=++.-.+.. -|-++..|.-.|-+|-.||--+=+=+.+-|-.++++-+.+...-.
T Consensus 61 r~~FidFLerSctaEFSGflLYKEl~rrlk~~---nP~lae~F~lMaRDEARHAGFlNkam~df~l~lDLgfLtk~r~YT 137 (323)
T cd01047 61 RQIFLEFLERSCTSEFSGFLLYKELGRRLKNT---NPVVAELFRLMARDEARHAGFLNKALSDFNLALDLGFLTKTRKYT 137 (323)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHHHHcccC---CcHHHHHHHHHhhhHHHHhhhHHHHHHHcCcccchhhhccCCcee
Confidence 34567889999999999999999999888742 588999999999999999999999999999999999888765433
Q ss_pred cCCHHHHHHHHHHHHHHHHHH
Q psy12315 91 WGTTEEAFSHALQLEKDVNQV 111 (120)
Q Consensus 91 ~~~~~~~l~~aL~~Ek~v~~~ 111 (120)
|=.|.=++-...--||.-=..
T Consensus 138 fF~PkfI~YatYLSEKIGYwR 158 (323)
T cd01047 138 FFKPKFIFYATYLSEKIGYWR 158 (323)
T ss_pred eeCccceeehhHhhhhhhhHH
Confidence 333444555555555543333
No 95
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=37.58 E-value=1.6e+02 Score=21.46 Aligned_cols=34 Identities=29% Similarity=0.213 Sum_probs=28.0
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Q psy12315 45 ALPGISKYFKHASDEESEHAHKLIKYLNKRGGTL 78 (120)
Q Consensus 45 ~l~g~a~~f~~~s~eE~~hA~~li~yi~~rGg~v 78 (120)
-+..+..||++.|.=|.++|.+|-+--..-.+..
T Consensus 20 ~~~~l~~f~keRa~iE~eYak~L~kLa~k~~~~~ 53 (251)
T cd07653 20 FLERYGKFVKERAAIEQEYAKKLRKLVKKYLPKK 53 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3567999999999999999999999877654433
No 96
>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....
Probab=37.52 E-value=34 Score=16.64 Aligned_cols=18 Identities=22% Similarity=0.372 Sum_probs=13.9
Q ss_pred HHHHHHHHHhcCCccccc
Q psy12315 64 AHKLIKYLNKRGGTLKLV 81 (120)
Q Consensus 64 A~~li~yi~~rGg~v~~~ 81 (120)
-..++++++++|..|...
T Consensus 14 ~~~~v~~Ll~~ga~~~~~ 31 (33)
T PF00023_consen 14 HPDIVKLLLKHGADINAR 31 (33)
T ss_dssp CHHHHHHHHHTTSCTTCB
T ss_pred HHHHHHHHHHCcCCCCCC
Confidence 356889999999887654
No 97
>cd07680 F-BAR_PACSIN1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 1 (PACSIN1). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 1 or Syndapin I is expressed specifically in the brain and is localized in neurites and synaptic boutons. It binds the brain-specific proteins dynamin I, synaptojanin, synapsin I, and neural Wiskott-Aldrich syndrome protein (nWASP), and functions as a link between the cytoskeletal machinery and synaptic vesicle endocytosis. PACSIN 1 interacts with huntingtin and may be implicated in the neuropatholog
Probab=36.88 E-value=1.5e+02 Score=22.49 Aligned_cols=32 Identities=6% Similarity=0.104 Sum_probs=27.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q psy12315 46 LPGISKYFKHASDEESEHAHKLIKYLNKRGGT 77 (120)
Q Consensus 46 l~g~a~~f~~~s~eE~~hA~~li~yi~~rGg~ 77 (120)
+.-+..|++..|.=|.+.|.+|.+.-.+-.+.
T Consensus 21 ~~dl~~f~kERA~IE~~Yak~L~~Lakk~~~~ 52 (258)
T cd07680 21 CNDLMNCVQERAKIEKAYGQQLTDWAKRWRQL 52 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34689999999999999999999998865533
No 98
>PF10239 DUF2465: Protein of unknown function (DUF2465); InterPro: IPR018797 FAM98A, B and C are glycine-rich proteins found from worms to humans whose function is unknown.
Probab=36.80 E-value=19 Score=28.06 Aligned_cols=23 Identities=22% Similarity=0.547 Sum_probs=17.9
Q ss_pred HHhcCCcccccccCCCCcCccCC
Q psy12315 71 LNKRGGTLKLVDVKAPARQEWGT 93 (120)
Q Consensus 71 i~~rGg~v~~~~i~~p~~~~~~~ 93 (120)
+=+|||+|.-...++|+.+.|.+
T Consensus 291 VPDRGGRp~e~~~Pp~eMP~w~~ 313 (318)
T PF10239_consen 291 VPDRGGRPNEIEPPPPEMPSWQK 313 (318)
T ss_pred CCCCCCCcCcCCCCCCCCCCchh
Confidence 33899999988888777778864
No 99
>COG2996 Predicted RNA-bindining protein (contains S1 and HTH domains) [General function prediction only]
Probab=34.01 E-value=45 Score=25.71 Aligned_cols=46 Identities=24% Similarity=0.514 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHhcCCcccccccCCCCc--CccCCHHHHHHHHHH
Q psy12315 58 DEESEHAHKLIKYLNKRGGTLKLVDVKAPAR--QEWGTTEEAFSHALQ 103 (120)
Q Consensus 58 ~eE~~hA~~li~yi~~rGg~v~~~~i~~p~~--~~~~~~~~~l~~aL~ 103 (120)
+.--+.|+.++.|+..+||..-+.+-..|+. ..|+--...|+.|+-
T Consensus 221 E~l~~daq~Il~yL~~~gG~mpf~DKSsPEdIk~~FgiSKg~FKrAiG 268 (287)
T COG2996 221 EMLDEDAQMILTYLESNGGFMPFNDKSSPEDIKATFGISKGQFKRAIG 268 (287)
T ss_pred HhhhhhHHHHHHHHHHcCCccccCCCCCHHHHHHHhCcCHHHHHHHHH
Confidence 3344689999999999999999998888852 234444456666554
No 100
>PLN02508 magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase
Probab=33.54 E-value=2.5e+02 Score=22.41 Aligned_cols=95 Identities=18% Similarity=0.121 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccCcCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCCCCcCccC
Q psy12315 13 ETEEKINKQINLELYASYVYLSMSAHFDRDVVALPGISKYFKHASDEESEHAHKLIKYLNKRGGTLKLVDVKAPARQEWG 92 (120)
Q Consensus 13 ~~~~~Ln~qi~~El~as~~Yl~~a~~f~~~~~~l~g~a~~f~~~s~eE~~hA~~li~yi~~rGg~v~~~~i~~p~~~~~~ 92 (120)
..++-|-.-.+.|+..-..|-=++.-.+. .=|-++..|.-.|-+|-.||--+=+=+.+-|-.++++-+.+...-.|=
T Consensus 79 ~FidFLerSctaEFSGflLYKEl~rrlk~---~nP~lae~F~lMaRDEARHAGFlNkam~Df~l~lDLgfLtk~rkYTfF 155 (357)
T PLN02508 79 IFIEFLERSCTAEFSGFLLYKELGRRLKK---TNPVVAEIFTLMSRDEARHAGFLNKALSDFNLALDLGFLTKNRKYTFF 155 (357)
T ss_pred HHHHHHHhhhhhhcccchHHHHHHHhccc---CChHHHHHHHHhCchhHHHHhHHHHHHHHcCccccchhhcccCceeee
Confidence 46888899999999999999999987773 258899999999999999999999999999999999988876543333
Q ss_pred CHHHHHHHHHHHHHHHHH
Q psy12315 93 TTEEAFSHALQLEKDVNQ 110 (120)
Q Consensus 93 ~~~~~l~~aL~~Ek~v~~ 110 (120)
.|.=++-...--||.-=.
T Consensus 156 ~PkfIfYAtYLSEKIGYw 173 (357)
T PLN02508 156 KPKFIFYATYLSEKIGYW 173 (357)
T ss_pred CcceeehhhHhhhhhhhh
Confidence 344455555555554333
No 101
>TIGR02029 AcsF magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase. This model respresents the oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under aerobic conditions. This enzyme is believed to utilize a binuclear iron center and molecular oxygen. There are two isoforms of this enzyme in some plants and cyanobacterai which are differentially regulated based on the levels of copper and oxygen. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under aerobic conditions (a separate enzyme, BchE, acts under anaerobic conditions). This enzyme is found in plants, cyanobacteria and other photosynthetic bacteria.
Probab=32.92 E-value=2.5e+02 Score=22.24 Aligned_cols=97 Identities=18% Similarity=0.126 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccCcCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCCCCcCccC
Q psy12315 13 ETEEKINKQINLELYASYVYLSMSAHFDRDVVALPGISKYFKHASDEESEHAHKLIKYLNKRGGTLKLVDVKAPARQEWG 92 (120)
Q Consensus 13 ~~~~~Ln~qi~~El~as~~Yl~~a~~f~~~~~~l~g~a~~f~~~s~eE~~hA~~li~yi~~rGg~v~~~~i~~p~~~~~~ 92 (120)
..++-|-.-.+.|+..-..|-=++.-.+.. =|-++..|.-.|-+|-.||--+=+=+.+-|-.++++-+.+...-.|=
T Consensus 73 ~FidFLerScTaEFSGflLYKEl~rrlk~~---~P~lae~F~~MaRDEARHAGFlNkam~df~l~lDLgfLtk~r~YTfF 149 (337)
T TIGR02029 73 AFIEFLERSCTSEFSGFLLYKELSRRLKNR---DPVVAELFQLMARDEARHAGFLNKALGDFGLALDLGFLTKTRKYTFF 149 (337)
T ss_pred HHHHHHHHHhhhhhhhhHHHHHHHHhcCCC---ChHHHHHHHHHhhhhHHHhhhHHHHHHHcCcccchhhhccCCceeee
Confidence 368889999999999999999999888743 36699999999999999999999999999999999988876543333
Q ss_pred CHHHHHHHHHHHHHHHHHHH
Q psy12315 93 TTEEAFSHALQLEKDVNQVI 112 (120)
Q Consensus 93 ~~~~~l~~aL~~Ek~v~~~l 112 (120)
.|.=++-...--||.-=..+
T Consensus 150 ~PkfI~YAtYLSEKIGYwRY 169 (337)
T TIGR02029 150 RPKFIYYATYLSEKIGYWRY 169 (337)
T ss_pred ccceeehhhHhHhhhhhHHH
Confidence 44445555555555443333
No 102
>KOG2297|consensus
Probab=31.83 E-value=2.2e+02 Score=22.74 Aligned_cols=80 Identities=13% Similarity=0.150 Sum_probs=44.5
Q ss_pred HHhhcccccCcCchhHHHHHHHH-HHHHHHHHHHHHHHHHhcCCccc-----------ccccCCCCc--CccCCHHHHHH
Q psy12315 34 SMSAHFDRDVVALPGISKYFKHA-SDEESEHAHKLIKYLNKRGGTLK-----------LVDVKAPAR--QEWGTTEEAFS 99 (120)
Q Consensus 34 ~~a~~f~~~~~~l~g~a~~f~~~-s~eE~~hA~~li~yi~~rGg~v~-----------~~~i~~p~~--~~~~~~~~~l~ 99 (120)
+.+.||- +.||.-+.+|-+.+ +...+.--++-+.=+..+|..+. =.+||.|.. -.|+++..+.+
T Consensus 228 ~Fak~Ft--~agL~elvey~~~q~~~~a~kElq~~L~~q~s~e~p~~evi~~VKee~k~~nlPe~eVi~ivWs~iMsave 305 (412)
T KOG2297|consen 228 HFAKYFT--DAGLKELVEYHRNQQSEGARKELQKELQEQVSEEDPVKEVILYVKEEMKRNNLPETEVIGIVWSGIMSAVE 305 (412)
T ss_pred HHHHHHh--HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCceEEeeeHhhhhHHHh
Confidence 4567788 66888888888877 34444444444443444443321 122333321 25888877777
Q ss_pred HHHHHHHHHHHHHHHH
Q psy12315 100 HALQLEKDVNQVIIYF 115 (120)
Q Consensus 100 ~aL~~Ek~v~~~l~~l 115 (120)
=.-..|....+.|+.|
T Consensus 306 WnKkeelva~qalrhl 321 (412)
T KOG2297|consen 306 WNKKEELVAEQALRHL 321 (412)
T ss_pred hchHHHHHHHHHHHHH
Confidence 7755555555555544
No 103
>COG4902 Uncharacterized protein conserved in archaea [Function unknown]
Probab=30.45 E-value=2e+02 Score=20.34 Aligned_cols=61 Identities=23% Similarity=0.298 Sum_probs=47.2
Q ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcCchhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy12315 6 VRQNFHAETEEKINKQINLELYASYVYLSMSAHFDRDVVALPGISKYFKHASDEESEHAHKLIKYLNKRG 75 (120)
Q Consensus 6 ~~~~~~~~~~~~Ln~qi~~El~as~~Yl~~a~~f~~~~~~l~g~a~~f~~~s~eE~~hA~~li~yi~~rG 75 (120)
-.++++.+-.+.|-.-+..|=-|-.+|+.+ |+ .|++| .|+.-|.-|.+|+...---+-+-|
T Consensus 42 ~~~plsdeE~nsLiyMrEEEKLARDVYL~L---Yn--kw~l~----IF~nIA~SEQ~HmDAVk~LlekYn 102 (189)
T COG4902 42 QDSPLSDEEINSLIYMREEEKLARDVYLYL---YN--KWNLP----IFRNIAASEQEHMDAVKSLLEKYN 102 (189)
T ss_pred cCCCCChHHHhhHHHHHHHHHHHhhHHhhh---hh--ccCcH----HHHHHHHhHHHHHHHHHHHHHHcC
Confidence 356788887788888888888899999875 45 78898 678899999999987655555544
No 104
>PF13606 Ank_3: Ankyrin repeat
Probab=29.34 E-value=49 Score=16.08 Aligned_cols=14 Identities=29% Similarity=0.657 Sum_probs=10.7
Q ss_pred HHHHHHHHhcCCcc
Q psy12315 65 HKLIKYLNKRGGTL 78 (120)
Q Consensus 65 ~~li~yi~~rGg~v 78 (120)
..+++|+++.|..|
T Consensus 15 ~e~v~~Ll~~gadv 28 (30)
T PF13606_consen 15 IEIVKYLLEHGADV 28 (30)
T ss_pred HHHHHHHHHcCCCC
Confidence 56788999888655
No 105
>COG0521 MoaB Molybdopterin biosynthesis enzymes [Coenzyme metabolism]
Probab=29.15 E-value=38 Score=24.13 Aligned_cols=30 Identities=30% Similarity=0.512 Sum_probs=23.7
Q ss_pred HHHHhhcccccCcCchhHHHHHHHHHHHH-HHHH
Q psy12315 32 YLSMSAHFDRDVVALPGISKYFKHASDEE-SEHA 64 (120)
Q Consensus 32 Yl~~a~~f~~~~~~l~g~a~~f~~~s~eE-~~hA 64 (120)
+-+.-..|+.+ +|||+..||..|-++ --+|
T Consensus 86 pEA~~~~~dKe---ipGFgE~fR~~S~~~~g~~A 116 (169)
T COG0521 86 PEATRPLFDKE---IPGFGELFRRLSLEEIGPTA 116 (169)
T ss_pred HHHHHHHHhcc---CCcHHHHHHHhhhhcCCCcE
Confidence 34556677865 999999999999998 6555
No 106
>PF07830 PP2C_C: Protein serine/threonine phosphatase 2C, C-terminal domain; InterPro: IPR012911 Protein phosphatase 2C (PP2C) is involved in regulating cellular responses to stress in various eukaryotes. It consists of two domains: an N-terminal catalytic domain and a C-terminal domain characteristic of mammalian PP2Cs. This domain consists of three antiparallel alpha helices, one of which packs against two corresponding alpha-helices of the N-terminal domain. The C-terminal domain does not seem to play a role in catalysis, but it may provide protein substrate specificity due to the cleft that is created between it and the catalytic domain []. ; GO: 0000287 magnesium ion binding, 0004721 phosphoprotein phosphatase activity, 0030145 manganese ion binding; PDB: 2P8E_A 3FXL_A 3FXO_A 1A6Q_A 3FXK_A 3FXM_A 3FXJ_A.
Probab=28.64 E-value=1.2e+02 Score=18.96 Aligned_cols=34 Identities=18% Similarity=0.190 Sum_probs=19.7
Q ss_pred ccccccCCCCcCccCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12315 78 LKLVDVKAPARQEWGTTEEAFSHALQLEKDVNQVIIYFFTS 118 (120)
Q Consensus 78 v~~~~i~~p~~~~~~~~~~~l~~aL~~Ek~v~~~l~~l~~~ 118 (120)
|+|++-++| -.+|++.--++++.+.+...++.++
T Consensus 5 V~FPgAPkv-------s~EAv~~E~eLd~~l~~rv~ei~~~ 38 (81)
T PF07830_consen 5 VCFPGAPKV-------SEEAVKKEAELDKYLEQRVEEIIEK 38 (81)
T ss_dssp EE-TTS-----------HHHHHHHHHHHHHHHHHHHHHT--
T ss_pred EecCCCCCC-------CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555 3578888888888888877777643
No 107
>cd01048 Ferritin_like_AB2 Uncharacterized family of ferritin-like proteins found in archaea and bacteria. Ferritin-like domain found in archaea and bacteria, subgroup 2 (Ferritin_like_AB2). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. The conserved residues of a diiron center are present within the putative active site.
Probab=28.41 E-value=1.8e+02 Score=19.33 Aligned_cols=55 Identities=11% Similarity=0.164 Sum_probs=47.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcCchhHHHHHHHHHHHHHHHHHHHHHH
Q psy12315 11 HAETEEKINKQINLELYASYVYLSMSAHFDRDVVALPGISKYFKHASDEESEHAHKLIKY 70 (120)
Q Consensus 11 ~~~~~~~Ln~qi~~El~as~~Yl~~a~~f~~~~~~l~g~a~~f~~~s~eE~~hA~~li~y 70 (120)
+....+++.-.+..|-.....|--++.--+ + +.+.+.|...+.+|+.|-..+++.
T Consensus 80 ~~s~~~al~~g~~~E~~~i~~ye~~~~~~~--d---~d~k~v~~~L~~~e~~H~~~f~~~ 134 (135)
T cd01048 80 PKSLQDALEVGVLIEELDIADYDRLLERTQ--N---PDIRDVFENLQAASRNHHLPFFRR 134 (135)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHhcc--c---HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 335678899999999999999999998877 3 679999999999999999888764
No 108
>PF06744 DUF1215: Protein of unknown function (DUF1215); InterPro: IPR010623 This domain represents a conserved region situated towards the C-terminal end of several hypothetical bacterial proteins of unknown function. A few members resemble the ImcF protein, which has been proposed [] to be involved in Vibrio cholerae cell surface reorganisation that results in increased adherence to epithelial cells line and increased conjugation frequency.
Probab=27.32 E-value=1.8e+02 Score=18.99 Aligned_cols=91 Identities=13% Similarity=0.124 Sum_probs=59.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhhc-c---cccCcCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCCC
Q psy12315 11 HAETEEKINKQINLELYASYVYLSMSAH-F---DRDVVALPGISKYFKHASDEESEHAHKLIKYLNKRGGTLKLVDVKAP 86 (120)
Q Consensus 11 ~~~~~~~Ln~qi~~El~as~~Yl~~a~~-f---~~~~~~l~g~a~~f~~~s~eE~~hA~~li~yi~~rGg~v~~~~i~~p 86 (120)
-......||+++..+....+.=..-+.| | ...|+.+.-|++||.-...=..---..|--|+-.+|+.-........
T Consensus 28 ~~~a~~~ln~~w~~~V~~~~~~~i~gRYPF~~~s~~dv~l~Df~~fF~p~G~ld~F~~~~L~~fvd~~~~~w~~~~~~~~ 107 (125)
T PF06744_consen 28 LQGARSYLNKAWQAEVYPFCRQAIAGRYPFDPDSSRDVSLADFARFFGPGGVLDQFFNQYLKPFVDTSGNPWRWRPGDGQ 107 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcccCCHHHHHHHhcCCCcHHHHHHHHHHHHHhCCCCcceeCCCCCc
Confidence 3456677888888887766553333222 2 34589999999999999888888888888888888887666555532
Q ss_pred CcCccCCHHHHHHHH
Q psy12315 87 ARQEWGTTEEAFSHA 101 (120)
Q Consensus 87 ~~~~~~~~~~~l~~a 101 (120)
...--.+.++.|+.|
T Consensus 108 ~~~~~~~~L~~~~~A 122 (125)
T PF06744_consen 108 GLGLSPAFLAQFQRA 122 (125)
T ss_pred CCCCCHHHHHHHHHH
Confidence 221122345555443
No 109
>PRK09614 nrdF ribonucleotide-diphosphate reductase subunit beta; Reviewed
Probab=27.15 E-value=2.9e+02 Score=21.19 Aligned_cols=65 Identities=9% Similarity=0.089 Sum_probs=42.6
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCCCCcCccCCHHHHHHHHHHHHHHHHHHHH
Q psy12315 45 ALPGISKYFKHASDEESEHAHKLIKYLNKRGGTLKLVDVKAPARQEWGTTEEAFSHALQLEKDVNQVII 113 (120)
Q Consensus 45 ~l~g~a~~f~~~s~eE~~hA~~li~yi~~rGg~v~~~~i~~p~~~~~~~~~~~l~~aL~~Ek~v~~~l~ 113 (120)
-+||++.-.+.-+.+|.-|..-...-++..= -..+.+..+. --..+.+++..+.+.|+.-+..+.
T Consensus 183 ~m~g~~~~i~~I~RDE~~H~~f~~~l~~~l~--~e~~~~~~~~--~~~~v~~l~~~ave~E~~~~~~~~ 247 (324)
T PRK09614 183 KMTGTAQIIRLIIRDESLHGYYIGYLFQEGL--EELPELEQEE--LKDEIYDLLYELYENEEAYTELLY 247 (324)
T ss_pred CcccHHHHHHHHHhhhHHHHHHHHHHHHHHH--HhCCHhhhHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6999999999999999999876554332211 0111111111 012477899999999998877654
No 110
>PF08988 DUF1895: Protein of unknown function (DUF1895); InterPro: IPR015081 The YscE protein, produced by the pathogen Yersinia, assumes a secondary structure composed of two anti-parallel alpha-helices separated by a flexible loop. The function of this protein is, as yet, unknown. ; PDB: 1ZW0_B 2P58_A 2UWJ_E 2Q1K_D 3PH0_B.
Probab=26.39 E-value=1.3e+02 Score=18.09 Aligned_cols=46 Identities=22% Similarity=0.192 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCCCCcCccCCHHHHHHHHHH
Q psy12315 51 KYFKHASDEESEHAHKLIKYLNKRGGTLKLVDVKAPARQEWGTTEEAFSHALQ 103 (120)
Q Consensus 51 ~~f~~~s~eE~~hA~~li~yi~~rGg~v~~~~i~~p~~~~~~~~~~~l~~aL~ 103 (120)
.-+...-..+..-|..-++..+++|+.|.= -..|...-+|++.|+.
T Consensus 13 ~~~~~~i~~~L~~a~~~vkr~L~~G~~P~e-------yQq~q~~~~AieAA~~ 58 (68)
T PF08988_consen 13 GEEARAIEQQLRQAQSQVKRKLDRGGTPQE-------YQQLQQQYDAIEAAIA 58 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCTSSHHH-------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCHHH-------HHHHHHHHHHHHHHHH
Confidence 345556677888999999999999998841 1235556666666654
No 111
>PF13041 PPR_2: PPR repeat family
Probab=26.17 E-value=83 Score=16.68 Aligned_cols=22 Identities=36% Similarity=0.314 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHhcCCcccc
Q psy12315 59 EESEHAHKLIKYLNKRGGTLKL 80 (120)
Q Consensus 59 eE~~hA~~li~yi~~rGg~v~~ 80 (120)
...+.|.++++-+..+|-.|+.
T Consensus 17 ~~~~~a~~l~~~M~~~g~~P~~ 38 (50)
T PF13041_consen 17 GKFEEALKLFKEMKKRGIKPDS 38 (50)
T ss_pred cCHHHHHHHHHHHHHcCCCCCH
Confidence 3568899999999999987754
No 112
>PF11640 TAN: Telomere-length maintenance and DNA damage repair; InterPro: IPR021668 ATM is a large protein kinase, in humans, critical for responding to DNA double-strand breaks (DSBs). Tel1, the orthologue from budding yeast, also regulates responses to DSBs. Tel1 is important for maintaining viability and for phosphorylation of the DNA damage signal transducer kinase Rad53 (an orthologue of mammalian CHK2). In addition to functioning in the response to DSBs, numerous findings indicate that Tel1/ATM regulates telomeres. The overall domain structure of Tel1/ATM is shared by proteins of the phosphatidylinositol 3-kinase (PI3K)-related kinase (PIKK) family, but this family carries a unique and functionally important TAN sequence motif, near its N-terminal, LxxxKxxE/DRxxxL. which is conserved specifically in the Tel1/ATM subclass of the PIKKs. The TAN motif is essential for both telomere length maintenance and Tel1 action in response to DNA damage []. It is classified as an 2.7.11.1 from EC. ; GO: 0004674 protein serine/threonine kinase activity
Probab=24.85 E-value=1.8e+02 Score=19.84 Aligned_cols=60 Identities=13% Similarity=0.221 Sum_probs=42.8
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCCCCcCccCCHHHHHHHHHHHHHHHH
Q psy12315 45 ALPGISKYFKHASDEESEHAHKLIKYLNKRGGTLKLVDVKAPARQEWGTTEEAFSHALQLEKDVN 109 (120)
Q Consensus 45 ~l~g~a~~f~~~s~eE~~hA~~li~yi~~rGg~v~~~~i~~p~~~~~~~~~~~l~~aL~~Ek~v~ 109 (120)
.+.....-+.---..||..|..-++.++.....+ ..++ ...|..+.+++...+..|+..-
T Consensus 5 ~i~~~~~~L~S~k~keR~~al~~L~~il~~~~~~--~~l~---~k~~~~ifeaL~~~i~~Ek~~y 64 (155)
T PF11640_consen 5 DINSILRLLSSDKIKERNKALEDLRHILSSPPRV--DSLN---DKQWHSIFEALFRCIEKEKEAY 64 (155)
T ss_pred hHHHHHHHHhccccchHHHHHHHHHHHHcCcccc--ccCC---cchHHHHHHHHHHHHHHHHHHH
Confidence 3444555566666778888888888888776544 2222 2379999999999999998653
No 113
>PLN02492 ribonucleoside-diphosphate reductase
Probab=24.70 E-value=3.2e+02 Score=21.08 Aligned_cols=54 Identities=20% Similarity=0.227 Sum_probs=39.4
Q ss_pred CchhHHHHHHHHHHHHHHHHHH---HHHHHHhcCCcccccccCCCCcCccCCHHHHHHHHHHHHHHHHHHH
Q psy12315 45 ALPGISKYFKHASDEESEHAHK---LIKYLNKRGGTLKLVDVKAPARQEWGTTEEAFSHALQLEKDVNQVI 112 (120)
Q Consensus 45 ~l~g~a~~f~~~s~eE~~hA~~---li~yi~~rGg~v~~~~i~~p~~~~~~~~~~~l~~aL~~Ek~v~~~l 112 (120)
-++|++.-.+--+.+|.-|..- +++.+.. .|. -....+++..|.+.|+.-+..+
T Consensus 181 ~m~g~~~~i~~I~RDE~~H~~~~~~l~~~l~~-----------~~~---~~~v~~l~~eav~~E~~~~~~~ 237 (324)
T PLN02492 181 LMPGLTFSNELISRDEGLHCDFACLLYSLLKN-----------KLS---EERVKEIVCEAVEIEKEFVCDA 237 (324)
T ss_pred CCcchHHHHHHHHhhHHHHHHHHHHHHHHHHh-----------CCC---HHHHHHHHHHHHHHHHHHHHHH
Confidence 6999999999999999999964 3344332 121 1246689999999999876644
No 114
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=24.53 E-value=89 Score=14.37 Aligned_cols=20 Identities=30% Similarity=0.277 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHhcCCccc
Q psy12315 60 ESEHAHKLIKYLNKRGGTLK 79 (120)
Q Consensus 60 E~~hA~~li~yi~~rGg~v~ 79 (120)
..+.|.++++-+...|-.|+
T Consensus 15 ~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 15 RVEEALELFKEMLERGIEPD 34 (35)
T ss_pred CHHHHHHHHHHHHHcCCCCC
Confidence 34678888888888886664
No 115
>PF12981 DUF3865: Domain of Unknown Function with PDB structure (DUF3865); InterPro: IPR024477 This entry represents a family of proteins of unknown function. The Nostoc punctiforme protein (D0VWS1 from SWISSPROT) has been structurally characterised and adopts a heme oxygenase-like fold similar to that of the Chlamydia trachomatis death domain-binding CADD protein. The proposed active sites of the Nostoc and Chlamydia sequences are identical, suggesting similar functions.; PDB: 3B5P_A 3B5O_A.
Probab=23.35 E-value=3e+02 Score=20.59 Aligned_cols=85 Identities=18% Similarity=0.173 Sum_probs=55.1
Q ss_pred HHHHHhhcccccCcCchhHHHHHHHHHHHHHH-------HHHHHHHHHHh-cCCcccccccCCCCc----------CccC
Q psy12315 31 VYLSMSAHFDRDVVALPGISKYFKHASDEESE-------HAHKLIKYLNK-RGGTLKLVDVKAPAR----------QEWG 92 (120)
Q Consensus 31 ~Yl~~a~~f~~~~~~l~g~a~~f~~~s~eE~~-------hA~~li~yi~~-rGg~v~~~~i~~p~~----------~~~~ 92 (120)
..+..|+++-+ ..+.||++.-+.+--.||.. ||--+-+=+.. -| .+.-+.+|.+.+ -+|+
T Consensus 54 ~~l~~A~~~~~-~~~~~~V~~El~~Ni~EE~G~~~gk~sHy~~~~~~l~~~~~-~~v~~~~Ps~aT~~fl~sv~~L~t~~ 131 (231)
T PF12981_consen 54 GMLQRAAYCIR-GFCWPGVAQELQRNINEEMGEGCGKISHYVVFRKALHTYFG-FDVNNRMPSVATTHFLDSVLALFTWD 131 (231)
T ss_dssp HHHHHHHHHHH-HTT-HHHHHHHHHHHHHHTTTTTTT--HHHHHHHHHHHHHS----TT----HHHHHHHHHHHHHCTS-
T ss_pred HHHHHHHHHHh-hcCCcHHHHHHHHhHHHhcCCCCCCcchHHHHHHHHHHHhC-CcccccCCcHHHHHHHHHHHHHhCCC
Confidence 34566777776 67889999999999999999 98877766665 44 222233333321 1233
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12315 93 TTEEAFSHALQLEKDVNQVIIYFFTS 118 (120)
Q Consensus 93 ~~~~~l~~aL~~Ek~v~~~l~~l~~~ 118 (120)
...++-...+.|-.....+.-|+++
T Consensus 132 -~s~vlGa~YAtE~~AIpEl~ll~ei 156 (231)
T PF12981_consen 132 -SSEVLGACYATEAAAIPELQLLYEI 156 (231)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4778888888888887777766664
No 116
>PF11583 AurF: P-aminobenzoate N-oxygenase AurF; PDB: 3CHI_B 3CHT_A 3CHH_A 2JCD_B 3CHU_A.
Probab=23.26 E-value=3.3e+02 Score=20.48 Aligned_cols=30 Identities=17% Similarity=0.306 Sum_probs=26.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy12315 46 LPGISKYFKHASDEESEHAHKLIKYLNKRG 75 (120)
Q Consensus 46 l~g~a~~f~~~s~eE~~hA~~li~yi~~rG 75 (120)
-.....|+.....||-.|+..+.++++..|
T Consensus 111 ~~~~~~~~~~~i~DE~rH~~mf~~~~~~~~ 140 (304)
T PF11583_consen 111 DDDAKRYALTEIADEARHSLMFARAINRTG 140 (304)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345778889999999999999999999988
No 117
>PF05504 Spore_GerAC: Spore germination B3/ GerAC like, C-terminal ; InterPro: IPR008844 The GerAA, -AB, and -AC proteins of the Bacillus subtilis spore are required for the germination response to L-alanine as the sole germinant. Members of GerAC family are thought to be located in the inner spore membrane. Although the function of this family is unclear, they are likely to encode the components of the germination apparatus that respond directly to this germinant, mediating the spore's response [].; GO: 0009847 spore germination, 0016020 membrane; PDB: 3N54_B.
Probab=22.80 E-value=2.5e+02 Score=18.93 Aligned_cols=46 Identities=17% Similarity=0.231 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcCchhHHHHHHHHHHHHHH
Q psy12315 12 AETEEKINKQINLELYASYVYLSMSAHFDRDVVALPGISKYFKHASDEESE 62 (120)
Q Consensus 12 ~~~~~~Ln~qi~~El~as~~Yl~~a~~f~~~~~~l~g~a~~f~~~s~eE~~ 62 (120)
+++++.+++.|..++.+....+.-- .++..-||+..++....+.|.
T Consensus 96 ~~le~~~~~~i~~~~~~~i~k~q~~-----~~~D~lg~g~~~~~~~p~~w~ 141 (171)
T PF05504_consen 96 KELEKQLEEEIKKEIQSLIKKMQKE-----LGVDPLGFGEYLRRKYPKEWK 141 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT-----T----S-HHHHHHHH-HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh-----hCcChHHHHHHHHHHCcHHHH
Confidence 4677888888888888876655422 245588999999999999884
No 118
>PF12122 DUF3582: Protein of unknown function (DUF3582); InterPro: IPR022732 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the N-terminal domain of membrane-bound serine endopeptidases belonging to MEROPS peptidase family S54 (rhomboid-1, clan ST). This domain contains a conserved ASW sequence motif and a single completely conserved residue F that may be functionally important. The tertiary structure of the GlpG protein from Escherichia coli has been determined []. The GlpG protein has six transmembrane domains (other members of the family are predicted to have seven), with the N- and C-terminal ends anchored in the cytoplasm. One transmembrane domain is shorter than the rest, creating an internal, aqueous cavity just below the membrane surface and it is here were proteolysis occurs. There is also a membrane-embedded loop between the first and second transmembrane domains which is postulated to act as a gate controlling substrate access to the active site. No other family of serine peptidases is known to have active site residues within transmembrane domains (although transmembrane active sites are known for aspartic peptidase and metallopeptidases), and the GlpG protein has the type structure for clan ST.; GO: 0004252 serine-type endopeptidase activity, 0016021 integral to membrane; PDB: 3UBB_A 3B45_A 3B44_A 2NRF_A 3TXT_A 2O7L_A 2XTU_A 2IRV_A 2XOW_A 2XTV_A ....
Probab=22.61 E-value=70 Score=20.66 Aligned_cols=21 Identities=29% Similarity=0.479 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHhcCCcccccc
Q psy12315 62 EHAHKLIKYLNKRGGTLKLVD 82 (120)
Q Consensus 62 ~hA~~li~yi~~rGg~v~~~~ 82 (120)
.-|..|++|+..+|-.+.+.+
T Consensus 11 r~AqaF~DYl~sqgI~~~i~~ 31 (101)
T PF12122_consen 11 RAAQAFIDYLASQGIELQIEP 31 (101)
T ss_dssp HHHHHHHHHHHHTT--EEEE-
T ss_pred HHHHHHHHHHHHCCCeEEEEE
Confidence 358899999999997777665
No 119
>TIGR02887 spore_ger_x_C germination protein, Ger(x)C family. Members of this protein family are restricted to endospore-forming members of the Firmicutes lineage of bacteria, including the genera Bacillus, Clostridium, Thermoanaerobacter, Carboxydothermus, etc. Members are nearly all predicted lipoproteins and belong to probable transport operons, some of which have been characterized as crucial to germination in response to alanine. Members typically have been gene symbols gerKC, gerAC, gerYC, etc.
Probab=22.40 E-value=3.3e+02 Score=21.09 Aligned_cols=45 Identities=13% Similarity=0.114 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcCchhHHHHHHHHHHHHHH
Q psy12315 12 AETEEKINKQINLELYASYVYLSMSAHFDRDVVALPGISKYFKHASDEESE 62 (120)
Q Consensus 12 ~~~~~~Ln~qi~~El~as~~Yl~~a~~f~~~~~~l~g~a~~f~~~s~eE~~ 62 (120)
+++++.++++|..|+......+.- +.. ..-||+..++..-..+|.
T Consensus 297 ~~le~~~e~~i~~~~~~~i~k~Q~---~~~---D~~g~g~~~~~~~p~~wk 341 (371)
T TIGR02887 297 KKIEKEAEKEIEKEIEQLIKKLQK---YKI---DPLGLGDELYRKHPKLWK 341 (371)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---hCC---CcchhHHHHHHhChHHHH
Confidence 567888888888888888766554 332 377999999888887775
No 120
>PRK13965 ribonucleotide-diphosphate reductase subunit beta; Provisional
Probab=20.63 E-value=3.5e+02 Score=21.10 Aligned_cols=80 Identities=14% Similarity=0.093 Sum_probs=48.8
Q ss_pred HHHHHHHHHHhhcc--cccCcCchhHHHHHHHHHHHHHHHHHHHHHHHHhc---CCcccccccCCCCcCccCCHHHHHHH
Q psy12315 26 LYASYVYLSMSAHF--DRDVVALPGISKYFKHASDEESEHAHKLIKYLNKR---GGTLKLVDVKAPARQEWGTTEEAFSH 100 (120)
Q Consensus 26 l~as~~Yl~~a~~f--~~~~~~l~g~a~~f~~~s~eE~~hA~~li~yi~~r---Gg~v~~~~i~~p~~~~~~~~~~~l~~ 100 (120)
+...+.|-+.+..+ .+. --++|++.-++--+.+|.-|.. +.-++..+ ...+.. +. ..-.-+.++++.
T Consensus 173 lEGi~FysgFa~~~~L~~~-gkM~g~~~~i~~I~RDE~lH~~-~~~~l~~~~~~~~~~e~-----~~-~~~~~v~~l~~e 244 (335)
T PRK13965 173 MPGFLLYGGFYLPFYLSAR-GKLPNTSDIIRLILRDKVIHNY-YSGYKYQQKVARLSPEK-----QA-EMKAFVFDLLYE 244 (335)
T ss_pred HHHHHHHHHHHHHHHHhhc-CCCccHHHHHHHHHHhHHHHHH-HHHHHHHHHHhhcCHHH-----HH-HHHHHHHHHHHH
Confidence 44455555544443 443 3699999999999999999995 22232222 111111 10 011237789999
Q ss_pred HHHHHHHHHHHHH
Q psy12315 101 ALQLEKDVNQVII 113 (120)
Q Consensus 101 aL~~Ek~v~~~l~ 113 (120)
|.+.|++-+..+.
T Consensus 245 av~~E~~~~~~~~ 257 (335)
T PRK13965 245 LIDLEKAYLRELY 257 (335)
T ss_pred HHHHHHHHHHHHH
Confidence 9999998776554
No 121
>PTZ00211 ribonucleoside-diphosphate reductase small subunit; Provisional
Probab=20.19 E-value=4.2e+02 Score=20.51 Aligned_cols=75 Identities=13% Similarity=0.121 Sum_probs=48.1
Q ss_pred HHHHHHHHHHhhc--ccccCcCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCCCCcCccCCHHHHHHHHHH
Q psy12315 26 LYASYVYLSMSAH--FDRDVVALPGISKYFKHASDEESEHAHKLIKYLNKRGGTLKLVDVKAPARQEWGTTEEAFSHALQ 103 (120)
Q Consensus 26 l~as~~Yl~~a~~--f~~~~~~l~g~a~~f~~~s~eE~~hA~~li~yi~~rGg~v~~~~i~~p~~~~~~~~~~~l~~aL~ 103 (120)
+.....|-+.+.. |.+. --++|++.-.+.-+.+|.-|..-...-++..-.. |. -....+++..|.+
T Consensus 172 lEgi~F~sgF~~~~~l~~~-g~m~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~~--------~~---~~~i~~l~~~ave 239 (330)
T PTZ00211 172 VEGIFFSGSFCAIFWLKKR-GLMPGLTFSNELISRDEGLHTDFACLLYSHLKNK--------LP---RERVQEIIKEAVE 239 (330)
T ss_pred hhhHHhhhhHHHHHHHHhc-CCCcchHHHHHHHHhhHHHHHHHHHHHHHHHhcC--------CC---HHHHHHHHHHHHH
Confidence 4444445444444 3332 3699999999999999999996554333222111 11 1247788999999
Q ss_pred HHHHHHHHH
Q psy12315 104 LEKDVNQVI 112 (120)
Q Consensus 104 ~Ek~v~~~l 112 (120)
.|+.-+..+
T Consensus 240 ~E~~~~~~~ 248 (330)
T PTZ00211 240 IEREFICDA 248 (330)
T ss_pred HHHHHHHHH
Confidence 999876644
No 122
>PF05974 DUF892: Domain of unknown function (DUF892); InterPro: IPR010287 This domain is found in several hypothetical bacterial proteins of unknown function.; PDB: 4ERU_B 3OGH_A 2GS4_B 2GYQ_B 3HIU_A.
Probab=20.07 E-value=3e+02 Score=18.86 Aligned_cols=53 Identities=19% Similarity=0.187 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccccCcCchhHHHHHHHHHHHHHHHHHHHHHHH
Q psy12315 17 KINKQINLELYASYVYLSMSAHFDRDVVALPGISKYFKHASDEESEHAHKLIKYL 71 (120)
Q Consensus 17 ~Ln~qi~~El~as~~Yl~~a~~f~~~~~~l~g~a~~f~~~s~eE~~hA~~li~yi 71 (120)
.|+..-..|.+-.-.|-++..|.. ..|.+..+..|...-+||...+.+|-+..
T Consensus 98 li~a~q~~ehyeIA~Y~tL~~~A~--~lG~~e~a~lL~~~L~EE~~~~~~L~~~a 150 (159)
T PF05974_consen 98 LIAAAQKVEHYEIAAYGTLIALAK--QLGDEEAAQLLEQNLDEEEAADEKLTQLA 150 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--HCT-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666778888888999999999 67999999999999999999999887754
Done!