RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12315
(120 letters)
>2cih_A Ferritin heavy chain; apoferritin, ferroxidase, DI-iron non-heme
protein, iron storage, iron, metal-binding,
oxidoreductase, phosphorylation; 1.5A {Homo sapiens}
PDB: 2chi_A 2cei_A 1fha_A 2fha_A 2cn7_A 2iu2_A 2clu_A
2cn6_A 3ajo_A 3ajq_A 3ajp_A 3erz_A 3es3_A 2z6m_A 1r03_A
Length = 183
Score = 162 bits (413), Expect = 1e-52
Identities = 62/111 (55%), Positives = 79/111 (71%)
Query: 2 AVSQVRQNFHAETEEKINKQINLELYASYVYLSMSAHFDRDVVALPGISKYFKHASDEES 61
+ SQVRQN+H ++E IN+QINL+LYASYVYLSMS +FDRD VAL +KYF H S EE
Sbjct: 5 STSQVRQNYHQDSEAAINRQINLDLYASYVYLSMSYYFDRDDVALKNFAKYFLHQSHEER 64
Query: 62 EHAHKLIKYLNKRGGTLKLVDVKAPARQEWGTTEEAFSHALQLEKDVNQVI 112
EHA KL+K N+RGG + L D++ P +W + A AL LEK+VNQ +
Sbjct: 65 EHAEKLMKLQNQRGGRIFLQDIQKPDCDDWESGLNAMECALHLEKNVNQSL 115
>1rcd_A L ferritin; iron storage; 2.00A {Rana catesbeiana} SCOP: a.25.1.1
PDB: 1rcg_A 1rci_A 1rcc_A 1rce_A
Length = 173
Score = 160 bits (408), Expect = 4e-52
Identities = 55/109 (50%), Positives = 78/109 (71%)
Query: 4 SQVRQNFHAETEEKINKQINLELYASYVYLSMSAHFDRDVVALPGISKYFKHASDEESEH 63
SQVRQNFH + E +N+ +NL+ ++SYVYLSM+++F+RD VAL +K+F+ S+EE EH
Sbjct: 3 SQVRQNFHQDCEAGLNRTVNLKFHSSYVYLSMASYFNRDDVALSNFAKFFRERSEEEKEH 62
Query: 64 AHKLIKYLNKRGGTLKLVDVKAPARQEWGTTEEAFSHALQLEKDVNQVI 112
A KLI+Y N+RGG + L V+ P R +W EA AL+L+K VNQ +
Sbjct: 63 AEKLIEYQNQRGGRVFLQSVEKPERDDWANGLEALQTALKLQKSVNQAL 111
>3ka8_A Ferritin, middle subunit; iron storage, DIIRON, iron,
metal-binding, oxidoreductase; 1.35A {Rana catesbeiana}
PDB: 3ka9_A 3ka3_A 1mfr_A 3ka4_A 3rbc_A 3re7_A 3rgd_A
3ka6_A 3shx_A 3sh6_A 3se1_A 1bg7_A
Length = 176
Score = 159 bits (404), Expect = 2e-51
Identities = 65/110 (59%), Positives = 79/110 (71%)
Query: 3 VSQVRQNFHAETEEKINKQINLELYASYVYLSMSAHFDRDVVALPGISKYFKHASDEESE 62
VSQVRQN+H++ E +N+ +NLELYASY Y SM A FDRD VAL ++++FK S EE E
Sbjct: 2 VSQVRQNYHSDCEAAVNRMLNLELYASYTYSSMYAFFDRDDVALHNVAEFFKEHSHEERE 61
Query: 63 HAHKLIKYLNKRGGTLKLVDVKAPARQEWGTTEEAFSHALQLEKDVNQVI 112
HA K +KY NKRGG + L D+K P R EWG T EA ALQLEK VNQ +
Sbjct: 62 HAEKFMKYQNKRGGRVVLQDIKKPERDEWGNTLEAMQAALQLEKTVNQAL 111
>3vnx_A Ferritin; 4-helix bundle, iron storage, oxidoreductase; 2.40A {Ulva
pertusa}
Length = 204
Score = 157 bits (399), Expect = 2e-50
Identities = 52/116 (44%), Positives = 68/116 (58%), Gaps = 4/116 (3%)
Query: 1 MAVSQVRQNFHAETEEKINKQINLELYASYVYLSMSAHFDRDVVALPGISKYFKHASDEE 60
+ S R +H E E IN+QIN+E SYVY ++ ++F RD V LPG +K+FK ASDEE
Sbjct: 27 VTDSYARVEYHIECEAAINEQINIEYTISYVYHALHSYFARDNVGLPGFAKFFKEASDEE 86
Query: 61 SEHAHKLIKYLNKRGGTLKLVDVKAP----ARQEWGTTEEAFSHALQLEKDVNQVI 112
EHAH L+ Y KRGG ++L + AP A + G A AL LEK Q +
Sbjct: 87 REHAHMLMDYQTKRGGRVELKPLAAPEMEFANDDKGEALYAMELALSLEKLNFQKL 142
>3a68_A Sferh-4, ferritin-4, chloroplastic; 4-helix bundle, iron storage,
CAGE-like protein, plant, iron, metal-binding,
oxidoreductase, plastid; 1.80A {Glycine max} PDB: 3a9q_A
Length = 212
Score = 156 bits (397), Expect = 6e-50
Identities = 52/113 (46%), Positives = 71/113 (62%), Gaps = 4/113 (3%)
Query: 4 SQVRQNFHAETEEKINKQINLELYASYVYLSMSAHFDRDVVALPGISKYFKHASDEESEH 63
S RQ + E+E +N+QIN+E SYVY +M A+FDRD VAL G++K+FK +S+EE EH
Sbjct: 35 SLARQKYVDESESAVNEQINVEYNVSYVYHAMFAYFDRDNVALRGLAKFFKESSEEEREH 94
Query: 64 AHKLIKYLNKRGGTLKLVDVKAPA----RQEWGTTEEAFSHALQLEKDVNQVI 112
A KL++Y NKRGG +KL + P + G A AL LEK N+ +
Sbjct: 95 AEKLMEYQNKRGGKVKLQSIVMPLSDFDHADKGDALHAMELALSLEKLTNEKL 147
>1vlg_A Ferritin; TM1128, structural genomics, JCSG, protein structu
initiative, PSI, joint center for structural genomics,
META protein; 2.00A {Thermotoga maritima} SCOP: a.25.1.1
PDB: 1z4a_A*
Length = 176
Score = 153 bits (388), Expect = 5e-49
Identities = 37/118 (31%), Positives = 64/118 (54%), Gaps = 9/118 (7%)
Query: 1 MAVSQVRQNFHA------ETEEKINKQINLELYASYVYLSMSAHFDRDVVALPGISKYFK 54
M ++ + H + + +N Q+N E+Y+SY+YLSM+ +FD + G + + K
Sbjct: 1 MGSDKIHHHHHHMMVISEKVRKALNDQLNREIYSSYLYLSMATYFDAE--GFKGFAHWMK 58
Query: 55 HASDEESEHAHKLIKYLNKRGGTLKLVDVKAPARQEWGTTEEAFSHALQLEKDVNQVI 112
+ EE HA K +Y+ +RGG ++L ++ P W ++AF AL+ E+ V Q I
Sbjct: 59 KQAQEELTHAMKFYEYIYERGGRVELEAIEKP-PSNWNGIKDAFEAALKHEEFVTQSI 115
>2v2p_A Ferritin light chain; metal transport, iron, haemin, apoferritin,
iron storage, metal-binding; 1.15A {Equus caballus} PDB:
2v2r_A 2v2m_A 2v2l_A 2v2s_A 2v2o_A 2v2n_A 2za6_A 2v2j_A
2v2i_A 2z5p_A 1dat_A 2g4h_A 1aew_A 3h7g_A 2zg9_X 2zg8_X
3fi6_A 3o7r_A 2w0o_A 1hrs_A* ...
Length = 174
Score = 149 bits (377), Expect = 2e-47
Identities = 47/109 (43%), Positives = 72/109 (66%)
Query: 4 SQVRQNFHAETEEKINKQINLELYASYVYLSMSAHFDRDVVALPGISKYFKHASDEESEH 63
SQ+RQN+ E E +N+ +NL L ASY YLS+ +FDRD VAL G+ +F+ + ++ +
Sbjct: 2 SQIRQNYSTEVEAAVNRLVNLYLRASYTYLSLGFYFDRDDVALEGVCHFFRQLAQQKMQG 61
Query: 64 AHKLIKYLNKRGGTLKLVDVKAPARQEWGTTEEAFSHALQLEKDVNQVI 112
A +L+K N+RGG D++ P++ EWGTT +A A+ LEK +NQ +
Sbjct: 62 AERLLKMQNQRGGRALFQDLQKPSQDEWGTTPDAMKAAIVLEKSLNQAL 110
>3kxu_A Ferritin; iron storage protein, disorder, iron, metal binding
protein; 1.85A {Homo sapiens} PDB: 3hx2_A 3hx5_A 3hx7_A
Length = 191
Score = 148 bits (376), Expect = 5e-47
Identities = 49/109 (44%), Positives = 70/109 (64%)
Query: 4 SQVRQNFHAETEEKINKQINLELYASYVYLSMSAHFDRDVVALPGISKYFKHASDEESEH 63
SQ+RQN+ + E +N +NL L ASY YLS+ +FDRD VAL G+S +F+ ++E+ E
Sbjct: 3 SQIRQNYSTDVEAAVNSLVNLYLQASYTYLSLGFYFDRDDVALEGVSHFFRELAEEKREG 62
Query: 64 AHKLIKYLNKRGGTLKLVDVKAPARQEWGTTEEAFSHALQLEKDVNQVI 112
+L+K N+RGG D+K PA EWG T +A A+ LEK +NQ +
Sbjct: 63 YERLLKMQNQRGGRALFQDIKKPAEDEWGKTPDAMKAAMALEKKLNQAL 111
>1z6o_M Ferritin heavy chain; metal binding protein, iron storage; 1.91A
{Trichoplusia NI} SCOP: a.25.1.1
Length = 191
Score = 147 bits (374), Expect = 9e-47
Identities = 46/119 (38%), Positives = 65/119 (54%), Gaps = 7/119 (5%)
Query: 1 MAVSQVRQNF---HAETEEKINKQINLELYASYVYLSMSAHFDRDVVALPGISKYFKHAS 57
+ Q+ +++ H + +QI +E+ AS YL+M AHF +DVV PG ++ F A+
Sbjct: 5 VNPVQIPKDWITMHRSCRNSMRQQIQMEVGASLQYLAMGAHFSKDVVNRPGFAQLFFDAA 64
Query: 58 DEESEHAHKLIKYLNKRGGTLK----LVDVKAPARQEWGTTEEAFSHALQLEKDVNQVI 112
EE EHA KLI+YL RG L+ V+ P R W EA HAL +E DV + I
Sbjct: 65 SEEREHAMKLIEYLLMRGELTNDVSSLLQVRPPTRSSWKGGVEALEHALSMESDVTKSI 123
>3qz3_A Ferritin; structural genomics, the center for structural genomics
of I diseases, csgid, cytoplasmic, oxidoreductase; 2.10A
{Vibrio cholerae o1 biovar el tor}
Length = 184
Score = 146 bits (371), Expect = 3e-46
Identities = 32/112 (28%), Positives = 56/112 (50%), Gaps = 6/112 (5%)
Query: 4 SQVRQNFH---AETEEKINKQINLELYASYVYLSMSAHFDRDVVALPGISKYFKHASDEE 60
+ + Q F E +N+QINLE ++S +YL MSA + G +++ + + EE
Sbjct: 2 NAMNQEFFMLSQAMVEHLNEQINLEFFSSNLYLQMSAWCED--KGFDGAAEFLRAHAVEE 59
Query: 61 SEHAHKLIKYLNKRGGTLKLVDVKAPARQEWGTTEEAFSHALQLEKDVNQVI 112
+H +L Y+++ G L + AP R ++ + E F Q E+ + Q I
Sbjct: 60 MQHMQRLFTYVSETGALPILGAIAAP-RHDFASLGEVFRETYQHEQKITQQI 110
>3oj5_A Ferritin family protein; ferroxidase, cytosol, oxidoreductase;
2.85A {Mycobacterium tuberculosis} PDB: 3qd8_A
Length = 189
Score = 141 bits (358), Expect = 3e-44
Identities = 26/106 (24%), Positives = 53/106 (50%), Gaps = 3/106 (2%)
Query: 7 RQNFHAETEEKINKQINLELYASYVYLSMSAHFDRDVVALPGISKYFKHASDEESEHAHK 66
+ + + +QI+ E A+ Y++++ +FD + LP ++K+F + EE HA
Sbjct: 4 YEGPKTKFHALMQEQIHNEFTAAQQYVAIAVYFDSE--DLPQLAKHFYSQAVEERNHAMM 61
Query: 67 LIKYLNKRGGTLKLVDVKAPARQEWGTTEEAFSHALQLEKDVNQVI 112
L+++L R +++ V R ++ EA + AL E+ V +
Sbjct: 62 LVQHLLDRDLRVEIPGVDTV-RNQFDRPREALALALDQERTVTDQV 106
>1s3q_A Ferritin; ferroxidase, four helix bundle, iron storage, metal
binding; 2.10A {Archaeoglobus fulgidus} SCOP: a.25.1.1
PDB: 1sq3_A 3kx9_A
Length = 173
Score = 140 bits (355), Expect = 5e-44
Identities = 37/104 (35%), Positives = 62/104 (59%), Gaps = 3/104 (2%)
Query: 9 NFHAETEEKINKQINLELYASYVYLSMSAHFDRDVVALPGISKYFKHASDEESEHAHKLI 68
+ + E +N+QIN E+Y++Y+YLSM+++FD + L G S + + EE HA K+
Sbjct: 3 SISEKMVEALNRQINAEIYSAYLYLSMASYFDS--IGLKGFSNWMRVQWQEELMHAMKMF 60
Query: 69 KYLNKRGGTLKLVDVKAPARQEWGTTEEAFSHALQLEKDVNQVI 112
++++RGG +KL V+ P EW + AF H + E +V + I
Sbjct: 61 DFVSERGGRVKLYAVEEP-PSEWDSPLAAFEHVYEHEVNVTKRI 103
>2jd6_0 Ferritin homolog, ferritin; metal transport, iron, pores, archaeon,
entry channels, thermostability, hyperthermophIle,
ferroxidase center; 2.75A {Pyrococcus furiosus} PDB:
2jd7_0 2jd8_0 2x17_0
Length = 174
Score = 138 bits (349), Expect = 4e-43
Identities = 31/100 (31%), Positives = 59/100 (59%), Gaps = 3/100 (3%)
Query: 13 ETEEKINKQINLELYASYVYLSMSAHFDRDVVALPGISKYFKHASDEESEHAHKLIKYLN 72
+ +N Q+N ELY++Y+Y +M+A+F+ + L G + + K ++EE HA + Y+
Sbjct: 5 RMLKALNDQLNRELYSAYLYFAMAAYFED--LGLEGFANWMKAQAEEEIGHALRFYNYIY 62
Query: 73 KRGGTLKLVDVKAPARQEWGTTEEAFSHALQLEKDVNQVI 112
R G ++L ++ P +EW + +AF A + EK +++ I
Sbjct: 63 DRNGRVELDEIPKP-PKEWESPLKAFEAAYEHEKFISKSI 101
>1krq_A Ferritin; H-chain like four-helix bundle, binding protein; 2.70A
{Campylobacter jejuni} SCOP: a.25.1.1
Length = 167
Score = 136 bits (346), Expect = 1e-42
Identities = 34/103 (33%), Positives = 57/103 (55%), Gaps = 3/103 (2%)
Query: 10 FHAETEEKINKQINLELYASYVYLSMSAHFDRDVVALPGISKYFKHASDEESEHAHKLIK 69
E + +N+QIN E+YA+ +YLSMS+ + +L G + + EES+HA KLI
Sbjct: 2 LSKEVVKLLNEQINKEMYAANLYLSMSSWCYEN--SLDGAGAFLFAHASEESDHAKKLIT 59
Query: 70 YLNKRGGTLKLVDVKAPARQEWGTTEEAFSHALQLEKDVNQVI 112
YLN+ ++L +VK P Q + + + F + E+ + + I
Sbjct: 60 YLNETDSHVELQEVKQP-EQNFKSLLDVFEKTYEHEQFITKSI 101
>3e6s_A Ferritin; iron storage, ferroxidase, oxidoreductase; 1.95A
{Pseudo-nitzschia multiseries} PDB: 3e6r_A
Length = 168
Score = 136 bits (346), Expect = 1e-42
Identities = 33/101 (32%), Positives = 52/101 (51%), Gaps = 3/101 (2%)
Query: 13 ETEEKINKQINLELYASYVYLSMSAHFDRDVVALPGISKYFKHASDEESEHAHKLIKYLN 72
E + N+Q+ E AS VYLS S FD++ G++ Y S EE EH + + N
Sbjct: 4 ELLDLFNRQVTQEFTASQVYLSASIWFDQN--DWEGMAAYMLAESAEEREHGLGFVDFAN 61
Query: 73 KRGGTLKLVDVKAP-ARQEWGTTEEAFSHALQLEKDVNQVI 112
KR ++L V AP + EW + E+ + L+LE+ + +
Sbjct: 62 KRNIPIELQAVPAPVSCAEWSSPEDVWQSILELEQANTRSL 102
>1eum_A Ferritin 1; ECFTNA, metal binding protein; 2.05A {Escherichia coli}
SCOP: a.25.1.1
Length = 165
Score = 133 bits (338), Expect = 1e-41
Identities = 31/100 (31%), Positives = 51/100 (51%), Gaps = 3/100 (3%)
Query: 13 ETEEKINKQINLELYASYVYLSMSAHFDRDVVALPGISKYFKHASDEESEHAHKLIKYLN 72
E EK+N+Q+NLELY+S +Y MSA G + + + + EE H +L YL
Sbjct: 5 EMIEKLNEQMNLELYSSLLYQQMSAWCSYH--TFEGAAAFLRRHAQEEMTHMQRLFDYLT 62
Query: 73 KRGGTLKLVDVKAPARQEWGTTEEAFSHALQLEKDVNQVI 112
G ++ V++P E+ + +E F + E+ + Q I
Sbjct: 63 DTGNLPRINTVESP-FAEYSSLDELFQETYKHEQLITQKI 101
>3bvf_A Ferritin; iron storage, metal-binding, oxidoreductase; 1.50A
{Helicobacter pylori} PDB: 3bve_A 3bvi_A 3bvk_A 3bvl_A
3egm_A
Length = 181
Score = 133 bits (337), Expect = 4e-41
Identities = 30/116 (25%), Positives = 58/116 (50%), Gaps = 10/116 (8%)
Query: 4 SQVRQNFHAET-------EEKINKQINLELYASYVYLSMSAHFDRDVVALPGISKYFKHA 56
S + H++ + +N+Q+N E+ +S +Y+SMS+ +L G +
Sbjct: 3 SSHHHHHHSQDPMLSKDIIKLLNEQVNKEMNSSNLYMSMSSWCYTH--SLDGAGLFLFDH 60
Query: 57 SDEESEHAHKLIKYLNKRGGTLKLVDVKAPARQEWGTTEEAFSHALQLEKDVNQVI 112
+ EE EHA KLI +LN+ ++L + AP ++ + F A + E+ +++ I
Sbjct: 61 AAEEYEHAKKLIIFLNENNVPVQLTSISAP-EHKFEGLTQIFQKAYEHEQHISESI 115
>1z6o_A Ferritin light chain; metal binding protein, iron storage; 1.91A
{Trichoplusia NI} SCOP: a.25.1.1
Length = 212
Score = 116 bits (291), Expect = 6e-34
Identities = 27/114 (23%), Positives = 41/114 (35%), Gaps = 5/114 (4%)
Query: 4 SQVRQNFHAETEEKINKQINLELYASYVYLSMSAHFDRDVVALPGISKYFKHASDEESEH 63
H ++ L L SY YL +A+F+ G SK FK SDE
Sbjct: 27 VYGEYGSHGNVATELQAYAKLHLERSYDYLLSAAYFNNYQTNRAGFSKLFKKLSDEAWSK 86
Query: 64 AHKLIKYLNKRGGTLKLVDVKAP-----ARQEWGTTEEAFSHALQLEKDVNQVI 112
+IK++ KRG + EA + AL +K++ +
Sbjct: 87 TIDIIKHVTKRGDKMNFDQHSTMKTERKNYTAENHELEALAKALDTQKELAERA 140
>3r2k_A Bacterioferritin, BFR; bacterial ferritin, iron binding, iron
storage, iron homeost iron release, iron mobilization;
1.55A {Pseudomonas aeruginosa} PDB: 3r2h_A 3r2l_A 3r2m_A
3r2o_A 3r2r_A 3r2s_A
Length = 154
Score = 50.0 bits (119), Expect = 6e-09
Identities = 21/102 (20%), Positives = 39/102 (38%), Gaps = 5/102 (4%)
Query: 11 HAETEEKINKQINLELYASYVYLSMSAHFDRDVVALPGISKYFKHASDEESEHAHKLIKY 70
H E + +N + EL A Y S ++ + + H +EE++HA L++
Sbjct: 4 HPEVIDYLNTLLTGELAARDQYFIHSRMYED--WGFSKLYERLNHEMEEETQHADALLRR 61
Query: 71 LNKRGGTLKLVDVKAPARQEWGTTEEAFSHALQLEKDVNQVI 112
+ GT ++ E L+LE+ V +
Sbjct: 62 ILLLEGTPRMRPDDIHPGTTV---PEMLEADLKLERHVRAAL 100
>2fkz_A Bacterioferritin; ferroxidase, DIIRON site, iron T metal binding
protein; HET: HEM; 2.00A {Azotobacter vinelandii} SCOP:
a.25.1.1 PDB: 2fl0_A* 1sof_A*
Length = 155
Score = 48.4 bits (115), Expect = 2e-08
Identities = 25/97 (25%), Positives = 41/97 (42%), Gaps = 4/97 (4%)
Query: 11 HAETEEKINKQINLELYASYVYLSMSAHFDRDVVALPGISKYFKHASDEESEHAHKLIKY 70
+ +NK + EL A Y + ++ L + K+ H S +E +HA KLIK
Sbjct: 4 DKIVIQHLNKILGNELIAINQYFLHARMYED--WGLEKLGKHEYHESIDEMKHADKLIKR 61
Query: 71 LNKRGGTLKLVDVKAPARQEWGTTEEAFSHALQLEKD 107
+ G L ++ E T+E L+LE+
Sbjct: 62 ILFLEGLPNLQELGKLLIGE--HTKEMLECDLKLEQA 96
>3qb9_A Bacterioferritin, BFR; cytosol, structural genomics, TB structural
genomics consort TBSGC, metal binding protein; HET: HEM;
2.11A {Mycobacterium tuberculosis} PDB: 2wtl_A* 3bkn_A*
Length = 174
Score = 48.1 bits (114), Expect = 3e-08
Identities = 20/102 (19%), Positives = 37/102 (36%), Gaps = 4/102 (3%)
Query: 11 HAETEEKINKQINLELYASYVYLSMSAHFDRDVVALPGISKYFKHASDEESEHAHKLIKY 70
+ +N+Q+ EL A Y S D ++ + + S +E HA ++
Sbjct: 6 DPDVLRLLNEQLTSELTAINQYFLHSKMQDN--WGFTELAAHTRAESFDEMRHAEEITDR 63
Query: 71 LNKRGGTLKLVDVKAPARQEWGTTEEAFSHALQLEKDVNQVI 112
+ G + + + T E F L +E DV +
Sbjct: 64 ILLLDGLPNYQRIGSLRIGQ--TLREQFEADLAIEYDVLNRL 103
>1jgc_A Bacterioferritin, BFR; iron storage protein, metal binding protein;
HET: HEM; 2.60A {Rhodobacter capsulatus} SCOP: a.25.1.1
Length = 161
Score = 45.0 bits (106), Expect = 4e-07
Identities = 23/102 (22%), Positives = 35/102 (34%), Gaps = 4/102 (3%)
Query: 11 HAETEEKINKQINLELYASYVYLSMSAHFDRDVVALPGISKYFKHASDEESEHAHKLIKY 70
A+ E +N + EL A Y + L ++K + S EE HA K+I
Sbjct: 4 DAKVIEFLNAALRSELTAISQYWVHFRLQED--WGLAKMAKKSREESIEEMGHADKIIAR 61
Query: 71 LNKRGGTLKLVDVKAPARQEWGTTEEAFSHALQLEKDVNQVI 112
+ G L + E E L E D ++
Sbjct: 62 ILFLEGHPNLQKLDPLRIGE--GPRETLECDLAGEHDALKLY 101
>2y3q_A Bacterioferritin; metal binding protein, redox; HET: HEM; 1.55A
{Escherichia coli} PDB: 1bfr_A* 1bcf_A* 2htn_A* 2vxi_A*
3e1j_A* 3e1l_A* 3e1m_A* 3e1n_A* 3e1o_A* 3e1p_A* 3ghq_A*
3e1q_A* 3e2c_A* 3isf_A* 3is8_A* 3ise_A* 3is7_A*
Length = 158
Score = 45.0 bits (106), Expect = 4e-07
Identities = 24/97 (24%), Positives = 36/97 (37%), Gaps = 4/97 (4%)
Query: 11 HAETEEKINKQINLELYASYVYLSMSAHFDRDVVALPGISKYFKHASDEESEHAHKLIKY 70
+ +NK + EL A Y + F L ++ H S +E +HA + I+
Sbjct: 4 DTKVINYLNKLLGNELVAINQYFLHARMFKN--WGLKRLNDVEYHESIDEMKHADRYIER 61
Query: 71 LNKRGGTLKLVDVKAPARQEWGTTEEAFSHALQLEKD 107
+ G L D+ E EE L LE D
Sbjct: 62 ILFLEGLPNLQDLGKLNIGE--DVEEMLRSDLALELD 96
>3fvb_A Bacterioferritin; niaid, ssgcid, decode, structural genomics,
seattle structural genomics center for infectious
disease; HET: HEM; 1.81A {Brucella melitensis biovar
ABORTUS2308}
Length = 182
Score = 43.9 bits (103), Expect = 1e-06
Identities = 23/97 (23%), Positives = 36/97 (37%), Gaps = 4/97 (4%)
Query: 11 HAETEEKINKQINLELYASYVYLSMSAHFDRDVVALPGISKYFKHASDEESEHAHKLIKY 70
+ E++N+ + LEL A Y + ++K + S EE HA KLI
Sbjct: 25 EPKVIERLNEALFLELGAVNQYWLHYRLLND--WGYTRLAKKEREESIEEMHHADKLIDR 82
Query: 71 LNKRGGTLKLVDVKAPARQEWGTTEEAFSHALQLEKD 107
+ G L V + +E L+ E D
Sbjct: 83 IIFLEGFPNLQTVSPLRIGQ--NVKEVLEADLKGEYD 117
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix
bundle, rubre like, electron transport; 1.63A
{Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB:
1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A
1ryt_A
Length = 191
Score = 42.8 bits (100), Expect = 4e-06
Identities = 23/94 (24%), Positives = 30/94 (31%), Gaps = 6/94 (6%)
Query: 13 ETEEKINKQINLELYASYVYLSMSAHFDRDVVALPGISKYFKHASDEESEHAHKLIKYLN 72
TE+ I E A Y +D IS F +D+E EHA +L K+L
Sbjct: 8 RTEKNILTAFAGESQARNRYNYFGGQAKKD--GFVQISDIFAETADQEREHAKRLFKFLE 65
Query: 73 KRGGTLKLVDVKAPARQEWGTTEEAFSHALQLEK 106
L V A T + E
Sbjct: 66 G----GDLEIVAAFPAGIIADTHANLIASAAGEH 95
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron
transfer, DIIR center, oxidoreductase; 1.40A
{Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1
PDB: 1yv1_A 1yux_A
Length = 202
Score = 41.7 bits (97), Expect = 1e-05
Identities = 14/93 (15%), Positives = 27/93 (29%), Gaps = 5/93 (5%)
Query: 13 ETEEKINKQINLELYASYVYLSMSAHFDRDVVALPGISKYFKHASDEESEHAHKLIKYLN 72
T E + I E A Y + + I++ F+ + E H +
Sbjct: 28 STLENLKAAIAGETGAHAKYTAFAKAAREQ--GYEQIARLFEATAAAELIHIGLEYALVA 85
Query: 73 KRGGTLKLVDVKAPARQEWGTTEEAFSHALQLE 105
+ + V AP+ + + E
Sbjct: 86 EMEPGYEKPTVAAPSA---YSCDLNLISGANGE 115
>3gvy_A Bacterioferritin; iron storage, DI-iron, ferroxida activity, heme,
metal binding protein; HET: HEM; 2.80A {Rhodobacter
sphaeroides}
Length = 161
Score = 40.7 bits (95), Expect = 2e-05
Identities = 24/98 (24%), Positives = 34/98 (34%), Gaps = 4/98 (4%)
Query: 11 HAETEEKINKQINLELYASYVYLSMSAHFDRDVVALPGISKYFKHASDEESEHAHKLIKY 70
A+ E +N + EL A Y + I+ + S EE HA KLI+
Sbjct: 4 DAKVIEYLNAALRSELTAVSQYWLHYRLQED--WGFGSIAHKSRKESIEEMHHADKLIQR 61
Query: 71 LNKRGGTLKLVDVKAPARQEWGTTEEAFSHALQLEKDV 108
+ GG L + + T E L E D
Sbjct: 62 IIFLGGHPNLQRLNPLRIGQ--TLRETLDADLAAEHDA 97
>1j30_A 144AA long hypothetical rubrerythrin; sulerythrin, sulfolobus
tokodaii strain 7, FOU bundle, domain swapping, metal
binding site plasticity; 1.70A {Sulfolobus tokodaii}
SCOP: a.25.1.1
Length = 144
Score = 39.5 bits (92), Expect = 4e-05
Identities = 18/94 (19%), Positives = 36/94 (38%), Gaps = 8/94 (8%)
Query: 12 AETEEKINKQINLELYASYVYLSMSAHFDRDVVALPGISKYFKHASDEESEHAHKLIKYL 71
+T E + + E A+ YL + D + P I+ + ++ E+ HA + ++
Sbjct: 7 TKTAENLKQGFIGESMANRRYLYFAKRADEE--GYPEIAGLLRSIAEGETAHAFGHLDFI 64
Query: 72 NKRGGTLKLVDVKAPARQEWGTTEEAFSHALQLE 105
+ G + GT E+ A+ E
Sbjct: 65 RQGGL------TDPATDKPIGTLEQMIESAIAGE 92
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress,
oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A
3pza_A 3qvd_A 1nnq_A 2hr5_A
Length = 170
Score = 39.7 bits (92), Expect = 4e-05
Identities = 18/80 (22%), Positives = 30/80 (37%), Gaps = 3/80 (3%)
Query: 13 ETEEKINKQINLELYASYVYLSMSAHFDRDVVALPGISKYFKHASDEESEHAHKLIKYLN 72
T++ + + E A YL + +++ P I+K F+ + E HA L
Sbjct: 6 MTKKFLEEAFAGESMAHMRYLIFAEKAEQE--GFPNIAKLFRAIAYAEFVHAKNHFIALG 63
Query: 73 KRGGTLK-LVDVKAPARQEW 91
K G T + L E
Sbjct: 64 KLGKTPENLQMGIEGETFEV 83
>4di0_A Rubrerythrin; ssgcid, seattle structural genomics center for
infectious DI peroxidase, oxidoreductase; 1.90A
{Burkholderia pseudomallei}
Length = 144
Score = 37.9 bits (88), Expect = 1e-04
Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Query: 13 ETEEKINKQINLELYASYVYLSMSAHFDRDVVALPGISKYFKHASDEESEHAHKLIKYLN 72
+TEE + E A+ YL ++ D + I+ F+ ++ E+ HAH ++YL
Sbjct: 12 KTEENLKYAFAGESQANRRYLYFASKADVE--GQNDIAALFRSTAEGETGHAHGHLEYLE 69
Query: 73 KRGGT 77
G
Sbjct: 70 AVGDP 74
>1nfv_A Bacterioferritin; 24 subunits in the active molecule, DIIRON HAEM
Fe-coproporphyrin III cofactor, iron storage-electron
complex; HET: FEC; 1.95A {Desulfovibrio desulfuricans}
SCOP: a.25.1.1 PDB: 1nf6_A* 1nf4_A*
Length = 179
Score = 35.0 bits (80), Expect = 0.002
Identities = 16/74 (21%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Query: 7 RQNFHAETEEKINKQINLELYASYVYLSMSAHFDRDVVALPGISKYFKHASDEESEHAHK 66
R++ A+ E +NK +EL+A + Y++ D + ++ K + +E HA
Sbjct: 5 REDRKAKVIEVLNKARAMELHAIHQYMNQHYSLD--DMDYGELAANMKLIAIDEMRHAEN 62
Query: 67 LIKYLNKRGGTLKL 80
+ + + GG
Sbjct: 63 FAERIKELGGEPTT 76
>2qqy_A Sigma B operon; dodecameric alpha-helical, ferritin fold,
structural genomic protein structure initiative; 2.00A
{Bacillus anthracis str}
Length = 149
Score = 33.9 bits (78), Expect = 0.004
Identities = 18/93 (19%), Positives = 34/93 (36%), Gaps = 5/93 (5%)
Query: 16 EKINKQINLELYASYVYLSMSAHFDRDVVALPGISKYFKHASDEESEHAHKLIKYLNKRG 75
E +N+ + E A +Y +A + + +F+ +E HA L + + G
Sbjct: 13 EGLNEDLAGEYSAIIMYNHNAATVSG--IYRQVLKPFFESEISDEQGHALYLAEKIKTLG 70
Query: 76 GTLKLVDVKAPARQEWGTTEEAFSHALQLEKDV 108
GT ++ E +A Q E +
Sbjct: 71 GT---PTTIPLRVKQAEDVREMLEYARQSEYET 100
>2clb_A DPS-like protein; DI-iron carboxylate, hypothetical protein,
bacterioferritin, hydrogen peroxide, metal binding
protein, archaea; 2.4A {Sulfolobus solfataricus}
Length = 188
Score = 31.9 bits (72), Expect = 0.028
Identities = 12/62 (19%), Positives = 24/62 (38%), Gaps = 2/62 (3%)
Query: 16 EKINKQINLELYASYVYLSMSAHFDRDVVALPGISKYFKHASDEESEHAHKLIKYLNKRG 75
+K+ K E Y Y + H + G+ + + A E+ H + + + + G
Sbjct: 28 DKLVKATAAEFTTYYYYTILRMHLTG--MEGEGLKEIAEDARLEDRLHFELMTQRIYELG 85
Query: 76 GT 77
G
Sbjct: 86 GG 87
>2vzb_A Putative bacterioferritin-related protein; DPS, DPSL, iron,
oxidative stress, metal transport; 2.30A {Bacteroides
fragilis}
Length = 170
Score = 31.6 bits (72), Expect = 0.028
Identities = 14/100 (14%), Positives = 32/100 (32%), Gaps = 9/100 (9%)
Query: 16 EKINKQINLELYASYVYLSMSAHFDRDVVALPGISKYFKHASDEESEHAHKLIKYLNKRG 75
+++N ++ E A Y Y + + + F+ ++EE HA + + +
Sbjct: 20 DQLNAALSEEWLAYYQYWVGALVVEG--AMRADVQGEFEEHAEEERHHAQLIADRIIELE 77
Query: 76 GTLKLVDVK-------APARQEWGTTEEAFSHALQLEKDV 108
G L K + + + E+
Sbjct: 78 GVPVLDPKKWFELARCKYDSPTAFDSVSLLNQNVSSERCA 117
>2fzf_A Hypothetical protein; structural genomics, southeast collaboratory
for structural genomics, secsg, protein structure
initiative, PSI; 2.70A {Pyrococcus furiosus} SCOP:
a.25.1.1
Length = 175
Score = 31.2 bits (70), Expect = 0.052
Identities = 15/98 (15%), Positives = 31/98 (31%), Gaps = 5/98 (5%)
Query: 15 EEKINKQINLELYASYVYLSMSAHFDRDVVALPGISKYFKHASDEESEHAHKLIKYLNKR 74
EE + I E+ A Y S++ + + ++EE +H L K ++
Sbjct: 22 EELLGMAIKAEIGAREFYKSLAEKIKI-----EALKEKINWLAEEEKKHEALLRKLYSQM 76
Query: 75 GGTLKLVDVKAPARQEWGTTEEAFSHALQLEKDVNQVI 112
++V K E + + +
Sbjct: 77 FPGKEVVFPKEHIGPELQPVARELEKVQDIIDLIRWAM 114
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.9 bits (66), Expect = 0.11
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 5/27 (18%)
Query: 16 EK--INK-QINLELYA--SYVYLSMSA 37
EK + K Q +L+LYA S L++ A
Sbjct: 18 EKQALKKLQASLKLYADDSAPALAIKA 44
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 29.2 bits (65), Expect = 0.28
Identities = 20/156 (12%), Positives = 37/156 (23%), Gaps = 73/156 (46%)
Query: 2 AVSQVRQNFHAE----TEEKI--NKQI-NLELYASYV-YLSMSA---------------- 37
SQ+++ F+ TE ++ EL ++ Y+S
Sbjct: 29 IASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCL 88
Query: 38 -HFDRD----------VVALPG------------ISKYFK--HASDEESEHAHK--LIKY 70
F+ L I Y + + L +
Sbjct: 89 TEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRA 148
Query: 71 LNKR--------GGTLKLVDVKAPARQEWGTTEEAF 98
+ + GG Q G T++ F
Sbjct: 149 VGEGNAQLVAIFGG------------Q--GNTDDYF 170
Score = 26.2 bits (57), Expect = 3.7
Identities = 6/40 (15%), Positives = 11/40 (27%), Gaps = 6/40 (15%)
Query: 25 ELYASYVYL------SMSAHFDRDVVALPGISKYFKHASD 58
+LY +Y L + + K F +
Sbjct: 175 DLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLN 214
>2oh3_A Rubrerythrin, COG1633: uncharacterized conserved protein;
ZP_00055496.1, COG1633: uncharacterized conSer protein;
HET: MSE PGE; 2.00A {Magnetospirillum magnetotacticum}
SCOP: a.25.1.8
Length = 167
Score = 28.5 bits (63), Expect = 0.37
Identities = 15/103 (14%), Positives = 30/103 (29%), Gaps = 12/103 (11%)
Query: 15 EEKINKQINLELYASYVYLSMSAHFDRDVVALPGISKYFKHASDEESEHAHKLIKYLNKR 74
E + I LE A+ Y+ ++ + + F+ + + H ++ +
Sbjct: 7 AEFLAHAIALETEAAERYVELADMMEAH--NNLDTATVFRDMARFSTLHGDEIKQRSRAL 64
Query: 75 -GGTLKLVDVKAPARQEWG---------TTEEAFSHALQLEKD 107
L + E G T A +A E
Sbjct: 65 ELPKLMSWQYRWKTPPEVGDENDIHYLMTPYHALRYARDNEIR 107
>3qhb_A Symerythrin, ORF180; four-helix bundle, carboxylate
bridged-DIIRON, ferritin-like superfamily, metal
transport; 1.20A {Cyanophora paradoxa} PDB: 3qhc_A
3sid_A
Length = 179
Score = 28.5 bits (63), Expect = 0.46
Identities = 12/58 (20%), Positives = 20/58 (34%), Gaps = 2/58 (3%)
Query: 28 ASYVYLSMSAHFDRDVVALPGISKYFKHASDEESEHAHKLIKYLNKRGGTLKLVDVKA 85
+Y + + R P I F + EE HA L K ++ ++A
Sbjct: 40 CDCMYPTFAEIARRS--GQPEIGAMFDAIAKEEGMHAQLLTKLYSELEVKDSAETLEA 95
>1vjx_A Putative ferritin-like DIIRON-carboxylate protein; structural
genomics, joint center for structural genomics, J
protein structure initiative; 2.30A {Thermotoga
maritima} SCOP: a.25.1.1
Length = 157
Score = 27.3 bits (60), Expect = 1.1
Identities = 21/105 (20%), Positives = 36/105 (34%), Gaps = 18/105 (17%)
Query: 15 EEKINKQINLELYASYVYLSMSAHFDRDVVALPGISKYFKHASDEESEHAHKLIKYLNKR 74
+ + I LE Y +S HF+ ++ F +D+E HA K ++
Sbjct: 16 SDILTVAIRLEEEGERFYRELSEHFNGEIKKT------FLELADQERIHAEIFRKMSDQE 69
Query: 75 GG------------TLKLVDVKAPARQEWGTTEEAFSHALQLEKD 107
D R++ T +E A+ +EKD
Sbjct: 70 NWDEVDSYLAGYAFYEVFPDTSEILRRKDLTLKEVLDIAISVEKD 114
>1srv_A Protein (groel (HSP60 class)); chaperone, cell division,
ATP-binding, phosphorylation; 1.70A {Thermus
thermophilus} SCOP: c.8.5.1
Length = 145
Score = 26.5 bits (59), Expect = 1.7
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 56 ASDEESEHAHKLIKYLNKRGGTLKLVDVKAP 86
A D E E L+ +NK GTL + VKAP
Sbjct: 60 AEDVEGEALATLV--VNKLRGTLSVAAVKAP 88
>3mvu_A TENA family transcriptional regulator; TENA/THI-4/PQQC family,
structural genomics, joint center FO structural
genomics, JCSG; HET: MSE; 1.80A {Ruegeria SP}
Length = 226
Score = 26.7 bits (58), Expect = 2.0
Identities = 7/53 (13%), Positives = 15/53 (28%), Gaps = 2/53 (3%)
Query: 55 HASDEESEHAHKLIKYLNKRGGTLKLVDVKAPARQEWGTTEEAFSHALQLEKD 107
+ D+ + L+ + + R + F A +LE
Sbjct: 168 YGGDDYQAACKAVGTLLDDALERRLGAEFTSSPRWS--RLCQTFHTATELEVG 218
>1iuk_A Hypothetical protein TT1466; structural genomics, riken structural
genomics/proteomics initiative, RSGI, unknown function;
1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A
Length = 140
Score = 26.1 bits (57), Expect = 2.5
Identities = 13/58 (22%), Positives = 25/58 (43%)
Query: 56 ASDEESEHAHKLIKYLNKRGGTLKLVDVKAPARQEWGTTEEAFSHALQLEKDVNQVII 113
A + S AH + +YL ++G + V+ + + +G A L+ D+ V
Sbjct: 21 AHKDPSRPAHYVPRYLREQGYRVLPVNPRFQGEELFGEEAVASLLDLKEPVDILDVFR 78
>2e0z_A Virus-like particle; bacteriophage, HK97; 3.60A {Pyrococcus
furiosus}
Length = 345
Score = 26.6 bits (58), Expect = 2.7
Identities = 13/73 (17%), Positives = 26/73 (35%), Gaps = 5/73 (6%)
Query: 1 MAVSQVRQNFHAETEEKINKQINLELYASYVYLSMSAHFDRDVVALPGISKYFKHASDEE 60
+++ + E E + I EL A +Y M+ + + + K + EE
Sbjct: 7 TLINRDKPYTKEELMEILRLAIIAELDAINLYEQMARYSED-----ENVRKILLDVAREE 61
Query: 61 SEHAHKLIKYLNK 73
H + + L
Sbjct: 62 KAHVGEFMALLLN 74
>3m6c_A 60 kDa chaperonin 1; chaperone, ATP-binding, nucleotide-binding;
2.20A {Mycobacterium tuberculosis}
Length = 194
Score = 26.0 bits (58), Expect = 3.0
Identities = 13/31 (41%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Query: 56 ASDEESEHAHKLIKYLNKRGGTLKLVDVKAP 86
A D E E L+ +N TLK V VK P
Sbjct: 66 AEDVEGEALATLV--VNAIRKTLKAVAVKGP 94
>3osx_A 60 kDa chaperonin; alpha, beta, apical domain, chaperone; 1.55A
{Xenorhabdus nematophila} PDB: 1kid_A 1fy9_A 1la1_A
1fya_A 1jon_A 1dk7_A 1dkd_A
Length = 201
Score = 26.0 bits (58), Expect = 3.1
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 56 ASDEESEHAHKLIKYLNKRGGTLKLVDVKAP 86
A D E E L+ +N G +K+ VKAP
Sbjct: 73 AEDVEGEALATLV--VNNMRGIVKVASVKAP 101
>1iok_A Chaperonin 60; chaperone; 3.20A {Paracoccus denitrificans} SCOP:
a.129.1.1 c.8.5.1 d.56.1.1
Length = 545
Score = 26.4 bits (59), Expect = 3.1
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 56 ASDEESEHAHKLIKYLNKRGGTLKLVDVKAP 86
A D E E L+ +NK G LK+ VKAP
Sbjct: 251 AEDVEGEALATLV--VNKLRGGLKIAAVKAP 279
>3maj_A DNA processing chain A; MCSG, PSI-2, structural genomics, protein
structure initiati midwest center for structural
genomics; HET: DNA; 2.05A {Rhodopseudomonas palustris}
Length = 382
Score = 26.1 bits (58), Expect = 3.6
Identities = 9/29 (31%), Positives = 13/29 (44%), Gaps = 6/29 (20%)
Query: 41 RDVVALPGISKYFKHASDEESEHAHKLIK 69
R+V A+PG D + + LIK
Sbjct: 263 REVFAVPG------SPLDPRAAGTNDLIK 285
>1kp8_A Groel protein; chaperonin, assisted protein folding, chaperone;
HET: ATP; 2.00A {Escherichia coli} SCOP: a.129.1.1
c.8.5.1 d.56.1.1 PDB: 1gr5_A 2c7e_A* 1grl_A 1oel_A
1xck_A 1gru_A 1mnf_A 1aon_A 2c7c_A 2c7d_A 2cgt_A 2nwc_A
3e76_A* 2eu1_A 1j4z_A 1kpo_O 1sx3_A* 3c9v_A 1ss8_A
3cau_A ...
Length = 547
Score = 26.0 bits (58), Expect = 4.1
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 56 ASDEESEHAHKLIKYLNKRGGTLKLVDVKAP 86
A D E E L+ +N G +K+ VKAP
Sbjct: 250 AEDVEGEALATLV--VNTMRGIVKVAAVKAP 278
>3rtk_A 60 kDa chaperonin 2; heat shock protein, chaperone; 2.80A
{Mycobacterium tuberculosis} PDB: 1sjp_A
Length = 546
Score = 26.0 bits (58), Expect = 4.2
Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 56 ASDEESEHAHKLIKYLNKRGGTLKLVDVKAP 86
A D E E L+ +NK GT K V VKAP
Sbjct: 249 AEDVEGEALSTLV--VNKIRGTFKSVAVKAP 277
>2duw_A Putative COA-binding protein; ligand binding protein; NMR
{Klebsiella pneumoniae}
Length = 145
Score = 25.4 bits (56), Expect = 4.3
Identities = 12/59 (20%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 56 ASDEESEHAHKLIKYLNKRGGTLKLVDVKAPARQEWGTTEEAFSHALQLEKDVNQVIIY 114
ASD+ +++++KYL +G + V K + G ++ ++ + + V+ V ++
Sbjct: 21 ASDKPDRPSYRVMKYLLDQGYHVIPVSPKVAGKTLLG--QQGYATLADVPEKVDMVDVF 77
>1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding,
ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP:
a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a*
Length = 543
Score = 25.6 bits (57), Expect = 4.5
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 56 ASDEESEHAHKLIKYLNKRGGTLKLVDVKAP 86
A D E E L+ +NK GTL + VKAP
Sbjct: 249 AEDVEGEALATLV--VNKLRGTLSVAAVKAP 277
>2an1_A Putative kinase; structural genomics, PSI, protein structure
initiative, midwest center for structural genomics,
MCSG, transferase; 2.00A {Salmonella typhimurium}
Length = 292
Score = 25.6 bits (57), Expect = 4.9
Identities = 6/41 (14%), Positives = 12/41 (29%), Gaps = 7/41 (17%)
Query: 35 MSAHFDRDVVALPGISKYFKHASDEESEHAHKLIKYLNKRG 75
M+ HF + + L ++L +G
Sbjct: 1 MNNHFKC--IGI-----VGHPRHPTALTTHEMLYRWLCDQG 34
>1oe8_A Glutathione S-transferase; schistosomiasis, detoxifying enzyme,
prostaglandin D2 synthase, vaccine candidate; HET: GSH;
1.65A {Schistosoma haematobium} SCOP: a.45.1.1 c.47.1.5
PDB: 1oe7_A* 2c80_A* 2ca8_A* 2f8f_A* 2c8u_A 2caq_A*
2cai_A* 1u3i_A*
Length = 211
Score = 24.7 bits (54), Expect = 7.6
Identities = 4/18 (22%), Positives = 9/18 (50%)
Query: 37 AHFDRDVVALPGISKYFK 54
H + + + P ++KY
Sbjct: 187 KHRENLLASSPRLAKYLS 204
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.130 0.364
Gapped
Lambda K H
0.267 0.0605 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,737,123
Number of extensions: 91564
Number of successful extensions: 368
Number of sequences better than 10.0: 1
Number of HSP's gapped: 335
Number of HSP's successfully gapped: 73
Length of query: 120
Length of database: 6,701,793
Length adjustment: 82
Effective length of query: 38
Effective length of database: 4,412,271
Effective search space: 167666298
Effective search space used: 167666298
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.7 bits)