RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12315
(120 letters)
>d1z6om1 a.25.1.1 (M:1-191) (Apo)ferritin {Cabbage
looper(Trichoplusia ni), H chain [TaxId: 7111]}
Length = 191
Score = 122 bits (306), Expect = 7e-37
Identities = 46/119 (38%), Positives = 64/119 (53%), Gaps = 7/119 (5%)
Query: 1 MAVSQVRQNF---HAETEEKINKQINLELYASYVYLSMSAHFDRDVVALPGISKYFKHAS 57
+ Q+ +++ H + +QI +E+ AS YL+M AHF +DVV PG ++ F A+
Sbjct: 5 VNPVQIPKDWITMHRSCRNSMRQQIQMEVGASLQYLAMGAHFSKDVVNRPGFAQLFFDAA 64
Query: 58 DEESEHAHKLIKYLNKRGGTLKLV----DVKAPARQEWGTTEEAFSHALQLEKDVNQVI 112
EE EHA KLI+YL RG V V+ P R W EA HAL +E DV + I
Sbjct: 65 SEEREHAMKLIEYLLMRGELTNDVSSLLQVRPPTRSSWKGGVEALEHALSMESDVTKSI 123
>d1rcda_ a.25.1.1 (A:) (Apo)ferritin {Bullfrog (Rana catesbeiana)
[TaxId: 8400]}
Length = 171
Score = 118 bits (297), Expect = 8e-36
Identities = 55/112 (49%), Positives = 79/112 (70%)
Query: 4 SQVRQNFHAETEEKINKQINLELYASYVYLSMSAHFDRDVVALPGISKYFKHASDEESEH 63
SQVRQNFH + E +N+ +NL+ ++SYVYLSM+++F+RD VAL +K+F+ S+EE EH
Sbjct: 1 SQVRQNFHQDCEAGLNRTVNLKFHSSYVYLSMASYFNRDDVALSNFAKFFRERSEEEKEH 60
Query: 64 AHKLIKYLNKRGGTLKLVDVKAPARQEWGTTEEAFSHALQLEKDVNQVIIYF 115
A KLI+Y N+RGG + L V+ P R +W EA AL+L+K VNQ ++
Sbjct: 61 AEKLIEYQNQRGGRVFLQSVEKPERDDWANGLEALQTALKLQKSVNQALLDL 112
>d1z6oa1 a.25.1.1 (A:13-212) (Apo)ferritin {Cabbage
looper(Trichoplusia ni), L chain [TaxId: 7111]}
Length = 200
Score = 118 bits (297), Expect = 2e-35
Identities = 27/111 (24%), Positives = 41/111 (36%), Gaps = 5/111 (4%)
Query: 7 RQNFHAETEEKINKQINLELYASYVYLSMSAHFDRDVVALPGISKYFKHASDEESEHAHK 66
H ++ L L SY YL +A+F+ G SK FK SDE
Sbjct: 18 EYGSHGNVATELQAYAKLHLERSYDYLLSAAYFNNYQTNRAGFSKLFKKLSDEAWSKTID 77
Query: 67 LIKYLNKRGGTLKLVDVKAPA-----RQEWGTTEEAFSHALQLEKDVNQVI 112
+IK++ KRG + EA + AL +K++ +
Sbjct: 78 IIKHVTKRGDKMNFDQHSTMKTERKNYTAENHELEALAKALDTQKELAERA 128
>d1bg7a_ a.25.1.1 (A:) (Apo)ferritin {Bullfrog (Rana catesbeiana)
[TaxId: 8400]}
Length = 173
Score = 116 bits (292), Expect = 4e-35
Identities = 65/109 (59%), Positives = 79/109 (72%)
Query: 4 SQVRQNFHAETEEKINKQINLELYASYVYLSMSAHFDRDVVALPGISKYFKHASDEESEH 63
SQVRQNFH + E IN+ +N+ELYASY YLSM+ +FDRD +AL ++K+FK S EE EH
Sbjct: 2 SQVRQNFHRDCEAAINRMVNMELYASYTYLSMAFYFDRDDIALHNVAKFFKEQSHEEREH 61
Query: 64 AHKLIKYLNKRGGTLKLVDVKAPARQEWGTTEEAFSHALQLEKDVNQVI 112
A KL+K NKRGG + L DV+ P R EWG T EA ALQLEK VNQ +
Sbjct: 62 AEKLMKDQNKRGGRIVLQDVQKPERDEWGNTLEAMQAALQLEKTVNQAL 110
>d1r03a_ a.25.1.1 (A:) (Apo)ferritin {Human (Homo sapiens),
mitocondial isoform [TaxId: 9606]}
Length = 171
Score = 116 bits (291), Expect = 5e-35
Identities = 61/109 (55%), Positives = 80/109 (73%)
Query: 4 SQVRQNFHAETEEKINKQINLELYASYVYLSMSAHFDRDVVALPGISKYFKHASDEESEH 63
S+VRQNFH ++E IN+QINLELYASYVYLSM+ +F RD VAL S+YF H S EE+EH
Sbjct: 1 SRVRQNFHPDSEAAINRQINLELYASYVYLSMAYYFSRDDVALNNFSRYFLHQSREETEH 60
Query: 64 AHKLIKYLNKRGGTLKLVDVKAPARQEWGTTEEAFSHALQLEKDVNQVI 112
A KL++ N+RGG ++L D+K P + +W + A AL LEK+VNQ +
Sbjct: 61 AEKLMRLQNQRGGRIRLQDIKKPEQDDWESGLHAMECALLLEKNVNQSL 109
>d1lb3a_ a.25.1.1 (A:) (Apo)ferritin {Mouse (Mus musculus) [TaxId:
10090]}
Length = 179
Score = 116 bits (291), Expect = 7e-35
Identities = 49/109 (44%), Positives = 73/109 (66%)
Query: 4 SQVRQNFHAETEEKINKQINLELYASYVYLSMSAHFDRDVVALPGISKYFKHASDEESEH 63
SQ+RQN+ E E +N+ +NL L ASY YLS+ FDRD VAL G+ +F+ ++E+ E
Sbjct: 1 SQIRQNYSTEVEAAVNRLVNLHLRASYTYLSLGFFFDRDDVALEGVGHFFRELAEEKREG 60
Query: 64 AHKLIKYLNKRGGTLKLVDVKAPARQEWGTTEEAFSHALQLEKDVNQVI 112
A +L+++ N RGG DV+ P++ EWG T+EA AL +EK++NQ +
Sbjct: 61 AERLLEFQNDRGGRALFQDVQKPSQDEWGKTQEAMEAALAMEKNLNQAL 109
>d1s3qa1 a.25.1.1 (A:3-164) Non-hem ferritin {Archaeon Archaeoglobus
fulgidus [TaxId: 2234]}
Length = 162
Score = 94.3 bits (234), Expect = 2e-26
Identities = 37/103 (35%), Positives = 61/103 (59%), Gaps = 3/103 (2%)
Query: 13 ETEEKINKQINLELYASYVYLSMSAHFDRDVVALPGISKYFKHASDEESEHAHKLIKYLN 72
+ E +N+QIN E+Y++Y+YLSM+++FD + L G S + + EE HA K+ +++
Sbjct: 5 KMVEALNRQINAEIYSAYLYLSMASYFDS--IGLKGFSNWMRVQWQEELMHAMKMFDFVS 62
Query: 73 KRGGTLKLVDVKAPARQEWGTTEEAFSHALQLEKDVNQVIIYF 115
+RGG +KL V+ P EW + AF H + E +V + I
Sbjct: 63 ERGGRVKLYAVEEP-PSEWDSPLAAFEHVYEHEVNVTKRIHEL 104
>d1vlga_ a.25.1.1 (A:) Non-hem ferritin {Thermotoga maritima [TaxId:
2336]}
Length = 164
Score = 91.6 bits (227), Expect = 2e-25
Identities = 35/103 (33%), Positives = 59/103 (57%), Gaps = 3/103 (2%)
Query: 10 FHAETEEKINKQINLELYASYVYLSMSAHFDRDVVALPGISKYFKHASDEESEHAHKLIK 69
+ + +N Q+N E+Y+SY+YLSM+ +FD + G + + K + EE HA K +
Sbjct: 4 ISEKVRKALNDQLNREIYSSYLYLSMATYFDAEG--FKGFAHWMKKQAQEELTHAMKFYE 61
Query: 70 YLNKRGGTLKLVDVKAPARQEWGTTEEAFSHALQLEKDVNQVI 112
Y+ +RGG ++L ++ P W ++AF AL+ E+ V Q I
Sbjct: 62 YIYERGGRVELEAIEKP-PSNWNGIKDAFEAALKHEEFVTQSI 103
>d1euma_ a.25.1.1 (A:) Non-hem ferritin {Escherichia coli, FtnA
[TaxId: 562]}
Length = 161
Score = 91.2 bits (226), Expect = 3e-25
Identities = 31/100 (31%), Positives = 51/100 (51%), Gaps = 3/100 (3%)
Query: 13 ETEEKINKQINLELYASYVYLSMSAHFDRDVVALPGISKYFKHASDEESEHAHKLIKYLN 72
E EK+N+Q+NLELY+S +Y MSA G + + + + EE H +L YL
Sbjct: 4 EMIEKLNEQMNLELYSSLLYQQMSAWCSYH--TFEGAAAFLRRHAQEEMTHMQRLFDYLT 61
Query: 73 KRGGTLKLVDVKAPARQEWGTTEEAFSHALQLEKDVNQVI 112
G ++ V++P E+ + +E F + E+ + Q I
Sbjct: 62 DTGNLPRINTVESP-FAEYSSLDELFQETYKHEQLITQKI 100
>d1krqa_ a.25.1.1 (A:) Non-hem ferritin {Campylobacter jejuni
[TaxId: 197]}
Length = 165
Score = 85.0 bits (210), Expect = 8e-23
Identities = 34/102 (33%), Positives = 56/102 (54%), Gaps = 3/102 (2%)
Query: 11 HAETEEKINKQINLELYASYVYLSMSAHFDRDVVALPGISKYFKHASDEESEHAHKLIKY 70
E + +N+QIN E+YA+ +YLSMS+ + L G + + EES+HA KLI Y
Sbjct: 3 SKEVVKLLNEQINKEMYAANLYLSMSSWCYENS--LDGAGAFLFAHASEESDHAKKLITY 60
Query: 71 LNKRGGTLKLVDVKAPARQEWGTTEEAFSHALQLEKDVNQVI 112
LN+ ++L +VK P Q + + + F + E+ + + I
Sbjct: 61 LNETDSHVELQEVKQP-EQNFKSLLDVFEKTYEHEQFITKSI 101
>d2htna1 a.25.1.1 (A:1-158) Bacterioferritin (cytochrome b1)
{Escherichia coli [TaxId: 562]}
Length = 158
Score = 60.1 bits (145), Expect = 3e-13
Identities = 23/105 (21%), Positives = 37/105 (35%), Gaps = 4/105 (3%)
Query: 11 HAETEEKINKQINLELYASYVYLSMSAHFDRDVVALPGISKYFKHASDEESEHAHKLIKY 70
+ +NK + EL A Y + F L ++ H S +E +HA + I+
Sbjct: 4 DTKVINYLNKLLGNELVAINQYFLHARMFKN--WGLKRLNDVEYHESIDEMKHADRYIER 61
Query: 71 LNKRGGTLKLVDVKAPARQEWGTTEEAFSHALQLEKDVNQVIIYF 115
+ G L D+ EE L LE D + +
Sbjct: 62 ILFLEGLPNLQDLGKL--NIGEDVEEMLRSDLALELDGAKNLREA 104
>d1nf4a_ a.25.1.1 (A:) Bacterioferritin (cytochrome b1)
{Desulfovibrio desulfuricans [TaxId: 876]}
Length = 169
Score = 60.1 bits (145), Expect = 4e-13
Identities = 18/109 (16%), Positives = 37/109 (33%), Gaps = 4/109 (3%)
Query: 7 RQNFHAETEEKINKQINLELYASYVYLSMSAHFDRDVVALPGISKYFKHASDEESEHAHK 66
R++ A+ E +NK +EL+A + Y++ D + ++ K + +E HA
Sbjct: 2 REDRKAKVIEVLNKARAMELHAIHQYMNQHYSLDD--MDYGELAANMKLIAIDEMRHAEN 59
Query: 67 LIKYLNKRGGTLKLVDVKAPARQEWGTTEEAFSHALQLEKDVNQVIIYF 115
+ + + GG + E + F
Sbjct: 60 FAERIKELGGEPTTQKEGKV--VTGQAVPVIYESDADQEDATIEAYSQF 106
>d1jgca_ a.25.1.1 (A:) Bacterioferritin (cytochrome b1) {Rhodobacter
capsulatus [TaxId: 1061]}
Length = 160
Score = 57.4 bits (138), Expect = 4e-12
Identities = 22/102 (21%), Positives = 35/102 (34%), Gaps = 4/102 (3%)
Query: 11 HAETEEKINKQINLELYASYVYLSMSAHFDRDVVALPGISKYFKHASDEESEHAHKLIKY 70
A+ E +N + EL A Y + L ++K + S EE HA K+I
Sbjct: 4 DAKVIEFLNAALRSELTAISQYWVHFRLQED--WGLAKMAKKSREESIEEMGHADKIIAR 61
Query: 71 LNKRGGTLKLVDVKAPARQEWGTTEEAFSHALQLEKDVNQVI 112
+ G L + + E L E D ++
Sbjct: 62 ILFLEGHPNLQKL--DPLRIGEGPRETLECDLAGEHDALKLY 101
>d2fkza1 a.25.1.1 (A:1-154) Bacterioferritin (cytochrome b1)
{Azotobacter vinelandii [TaxId: 354]}
Length = 154
Score = 55.1 bits (132), Expect = 2e-11
Identities = 24/102 (23%), Positives = 41/102 (40%), Gaps = 4/102 (3%)
Query: 11 HAETEEKINKQINLELYASYVYLSMSAHFDRDVVALPGISKYFKHASDEESEHAHKLIKY 70
+ +NK + EL A Y + ++ L + K+ H S +E +HA KLIK
Sbjct: 4 DKIVIQHLNKILGNELIAINQYFLHARMYED--WGLEKLGKHEYHESIDEMKHADKLIKR 61
Query: 71 LNKRGGTLKLVDVKAPARQEWGTTEEAFSHALQLEKDVNQVI 112
+ G L ++ T+E L+LE+ +
Sbjct: 62 ILFLEGLPNLQEL--GKLLIGEHTKEMLECDLKLEQAGLPDL 101
>d1yuza1 a.25.1.1 (A:23-157) Nigerythrin, N-terminal domain
{Desulfovibrio vulgaris [TaxId: 881]}
Length = 135
Score = 51.7 bits (123), Expect = 4e-10
Identities = 14/94 (14%), Positives = 28/94 (29%), Gaps = 2/94 (2%)
Query: 12 AETEEKINKQINLELYASYVYLSMSAHFDRDVVALPGISKYFKHASDEESEHAHKLIKYL 71
T E + I E A Y + + I++ F+ + E H +
Sbjct: 5 GSTLENLKAAIAGETGAHAKYTAFAKAAREQ--GYEQIARLFEATAAAELIHIGLEYALV 62
Query: 72 NKRGGTLKLVDVKAPARQEWGTTEEAFSHALQLE 105
+ + V AP+ + ++ E
Sbjct: 63 AEMEPGYEKPTVAAPSAYSCDLNLISGANGEIYE 96
>d1lkoa1 a.25.1.1 (A:2-147) Rubrerythrin, N-terminal domain
{Desulfovibrio vulgaris [TaxId: 881]}
Length = 146
Score = 47.0 bits (111), Expect = 3e-08
Identities = 23/103 (22%), Positives = 34/103 (33%), Gaps = 5/103 (4%)
Query: 13 ETEEKINKQINLELYASYVYLSMSAHFDRDVVALPGISKYFKHASDEESEHAHKLIKYLN 72
TE+ I E A Y +D IS F +D+E EHA +L K+L
Sbjct: 7 RTEKNILTAFAGESQARNRYNYFGGQAKKD--GFVQISDIFAETADQEREHAKRLFKFLE 64
Query: 73 KRGGTLKLVDVKAPARQEWGTTEEAFSHALQLEKDVNQVIIYF 115
+ PA T + A + ++ F
Sbjct: 65 GGDLE---IVAAFPAGIIADTHANLIASAAGEHHEYTEMYPSF 104
>d1j30a_ a.25.1.1 (A:) Hypothetical rubrerythrin {Archaeon
Sulfolobus tokodaii [TaxId: 111955]}
Length = 141
Score = 41.2 bits (96), Expect = 4e-06
Identities = 17/100 (17%), Positives = 36/100 (36%), Gaps = 7/100 (7%)
Query: 13 ETEEKINKQINLELYASYVYLSMSAHFDRDVVALPGISKYFKHASDEESEHAHKLIKYLN 72
+T E + + E A+ YL + D + P I+ + ++ E+ HA + ++
Sbjct: 6 KTAENLKQGFIGESMANRRYLYFAKRADEE--GYPEIAGLLRSIAEGETAHAFGHLDFIR 63
Query: 73 KRGGTLKLVDVKAPARQEWGTTEEAFSHALQLEKDVNQVI 112
+ G T A + + S + Q+
Sbjct: 64 QGGLT-----DPATDKPIGTLEQMIESAIAGETYEWTQMY 98
>d2fzfa1 a.25.1.1 (A:10-167) Hypothetical protein PF1190 {Archaeon
Pyrococcus furiosus [TaxId: 2261]}
Length = 158
Score = 35.3 bits (80), Expect = 5e-04
Identities = 15/94 (15%), Positives = 29/94 (30%), Gaps = 5/94 (5%)
Query: 13 ETEEKINKQINLELYASYVYLSMSAHFDRDVVALPGISKYFKHASDEESEHAHKLIKYLN 72
EE + I E+ A Y S++ + + ++EE +H L K +
Sbjct: 11 SLEELLGMAIKAEIGAREFYKSLAEKIKI-----EALKEKINWLAEEEKKHEALLRKLYS 65
Query: 73 KRGGTLKLVDVKAPARQEWGTTEEAFSHALQLEK 106
+ ++V K E +
Sbjct: 66 QMFPGKEVVFPKEHIGPELQPVARELEKVQDIID 99
>d2ib0a1 a.25.1.9 (A:17-158) Hypothetical protein Rv2844
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 142
Score = 32.0 bits (72), Expect = 0.007
Identities = 17/90 (18%), Positives = 33/90 (36%), Gaps = 6/90 (6%)
Query: 18 INKQINLELYASYVYLSMSAHFDRDVVALPGISKYFKHASDEESEHAHKLIKYLNKRGGT 77
+ + +E Y Y +SA PG++ A + +I L+ RG T
Sbjct: 10 LCDALAVEHATIYGYGIVSALSP------PGVNFLVADALKQHRHRRDDVIVMLSARGVT 63
Query: 78 LKLVDVKAPARQEWGTTEEAFSHALQLEKD 107
+ + + +A A+++E D
Sbjct: 64 APIAAAGYQLPMQVSSAADAARLAVRMEND 93
>d1vjxa_ a.25.1.1 (A:) Hypothetical protein TM1526 {Thermotoga
maritima [TaxId: 2336]}
Length = 149
Score = 31.8 bits (71), Expect = 0.009
Identities = 17/77 (22%), Positives = 27/77 (35%), Gaps = 6/77 (7%)
Query: 11 HAETEEKINKQINLELYASYVYLSMSAHFDRDVVALPGISKYFKHASDEESEHAHKLIKY 70
H + + + I LE Y +S HF+ I K F +D+E HA K
Sbjct: 4 HMKVSDILTVAIRLEEEGERFYRELSEHFN------GEIKKTFLELADQERIHAEIFRKM 57
Query: 71 LNKRGGTLKLVDVKAPA 87
++ + A
Sbjct: 58 SDQENWDEVDSYLAGYA 74
>d2oh3a1 a.25.1.8 (A:3-154) Uncharacterized protein AMB4284
homologue {Magnetospirillum magnetotacticum ms-1
[TaxId: 272627]}
Length = 152
Score = 30.3 bits (67), Expect = 0.030
Identities = 8/63 (12%), Positives = 21/63 (33%), Gaps = 2/63 (3%)
Query: 15 EEKINKQINLELYASYVYLSMSAHFDRDVVALPGISKYFKHASDEESEHAHKLIKYLNKR 74
E + I LE A+ Y+ ++ + + F+ + + H ++ +
Sbjct: 4 AEFLAHAIALETEAAERYVELADMMEAH--NNLDTATVFRDMARFSTLHGDEIKQRSRAL 61
Query: 75 GGT 77
Sbjct: 62 ELP 64
>d1ioka2 c.8.5.1 (A:191-366) GroEL, A domain {Paracoccus
denitrificans [TaxId: 266]}
Length = 176
Score = 26.2 bits (58), Expect = 0.94
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 55 HASDEESEHAHKLIKYLNKRGGTLKLVDVKAP 86
A D E E L+ +NK G LK+ VKAP
Sbjct: 60 VAEDVEGEALATLV--VNKLRGGLKIAAVKAP 89
>d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus
furiosus [TaxId: 2261]}
Length = 116
Score = 24.2 bits (52), Expect = 3.9
Identities = 10/58 (17%), Positives = 22/58 (37%), Gaps = 2/58 (3%)
Query: 56 ASDEESEHAHKLIKYLNKRGGTLKLVDVKAPARQEWGTTEEAFSHALQLEKDVNQVII 113
AS +++ + ++K L +G + V+ G L + DV ++
Sbjct: 9 ASKNPAKYGNIILKDLLSKGFEVLPVNPNYDEI--EGLKCYRSVRELPKDVDVIVFVV 64
>d1srva_ c.8.5.1 (A:) GroEL, A domain {Thermus thermophilus
[TaxId: 274]}
Length = 145
Score = 23.1 bits (50), Expect = 9.5
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 56 ASDEESEHAHKLIKYLNKRGGTLKLVDVKAP 86
A D E E L+ +NK GTL + VKAP
Sbjct: 60 AEDVEGEALATLV--VNKLRGTLSVAAVKAP 88
>d1z72a1 a.132.1.3 (A:4-220) Putative transcriptional regulator
SP0716 (SPr0628) {Streptococcus pneumoniae [TaxId:
1313]}
Length = 217
Score = 23.2 bits (49), Expect = 9.9
Identities = 13/86 (15%), Positives = 30/86 (34%), Gaps = 14/86 (16%)
Query: 26 LYASYVYLSMSAHFDRDVVALPGISKYFK----HASDEESEHAHKLIKYLNKRGGTLKLV 81
L + + + +ALP + + + H +E L+ LN+
Sbjct: 136 LVMLVIAEGLYLDWGSKDLALPEVYIHSEWINLHRGPFFAEWVQFLVDELNRV------- 188
Query: 82 DVKAPARQEWGTTEEAFSHALQLEKD 107
R++ ++ ++ A+ LE
Sbjct: 189 ---GKNREDLTELQQRWNQAVALELA 211
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.130 0.364
Gapped
Lambda K H
0.267 0.0689 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 410,659
Number of extensions: 16487
Number of successful extensions: 100
Number of sequences better than 10.0: 1
Number of HSP's gapped: 88
Number of HSP's successfully gapped: 40
Length of query: 120
Length of database: 2,407,596
Length adjustment: 74
Effective length of query: 46
Effective length of database: 1,391,576
Effective search space: 64012496
Effective search space used: 64012496
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.0 bits)