BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12318
(392 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1IVH|A Chain A, Structure Of Human Isovaleryl-coa Dehydrogenase At 2.6
Angstroms Resolution: Structural Basis For Substrate
Specificity
pdb|1IVH|B Chain B, Structure Of Human Isovaleryl-coa Dehydrogenase At 2.6
Angstroms Resolution: Structural Basis For Substrate
Specificity
pdb|1IVH|C Chain C, Structure Of Human Isovaleryl-coa Dehydrogenase At 2.6
Angstroms Resolution: Structural Basis For Substrate
Specificity
pdb|1IVH|D Chain D, Structure Of Human Isovaleryl-coa Dehydrogenase At 2.6
Angstroms Resolution: Structural Basis For Substrate
Specificity
Length = 394
Score = 538 bits (1385), Expect = e-153, Method: Compositional matrix adjust.
Identities = 249/388 (64%), Positives = 311/388 (80%)
Query: 4 IDDTIYDLTEEQNKLRETVASYCKTHITPIAADIDSTNDFKDLRKVWKDFGQLGLLGITV 63
+DD I L+EEQ +LR+T+A + + H+ P A +ID +N+FK+LR+ WK G LG+LGIT
Sbjct: 6 VDDAINGLSEEQRQLRQTMAKFLQEHLAPKAQEIDRSNEFKNLREFWKQLGNLGVLGITA 65
Query: 64 PEEFGGSEMGYLDHVIAMEELSRSSASVGLSFVAHSNLCVNQINRHATKQQKEKYLPALC 123
P ++GGS +GYL+HV+ MEE+SR+S +VGLS+ AHSNLC+NQ+ R+ + QKEKYLP L
Sbjct: 66 PVQYGGSGLGYLEHVLVMEEISRASGAVGLSYGAHSNLCINQLVRNGNEAQKEKYLPKLI 125
Query: 124 SGEKIGCLAMSEPGSGSDVISMSLKAEKKGDMYVLNGNKFWITNGPDADIAVVYARTNPN 183
SGE IG LAMSEP +GSDV+SM LKAEKKG+ Y+LNGNKFWITNGPDAD+ +VYA+T+
Sbjct: 126 SGEYIGALAMSEPNAGSDVVSMKLKAEKKGNHYILNGNKFWITNGPDADVLIVYAKTDLA 185
Query: 184 ADKKQHGISTFIVEKGTPGFSKGKKLNKLGMRGSNTGELIFENCQVPAENLLGGENKGAY 243
A GI+ FIVEKG PGFS KKL+KLGMRGSNT ELIFE+C++PA N+LG ENKG Y
Sbjct: 186 AVPASRGITAFIVEKGMPGFSTSKKLDKLGMRGSNTCELIFEDCKIPAANILGHENKGVY 245
Query: 244 VLMSGLDLERLVISAGPVGIMQACCDFAFNYVHERVQFGTRIGEFQLMQGKIADMHVALS 303
VLMSGLDLERLV++ GP+G+MQA D Y+H R FG +IG FQLMQGK+ADM+ L
Sbjct: 246 VLMSGLDLERLVLAGGPLGLMQAVLDHTIPYLHVREAFGQKIGHFQLMQGKMADMYTRLM 305
Query: 304 ASRAYLYSVAKACDRGSINSKECAGVFLVAAENAVKVALEAIQCLGGNGYINDYPTGRYL 363
A R Y+Y+VAKACD G +K+CAGV L +AE A +VAL+ IQC GGNGYIND+P GR+L
Sbjct: 306 ACRQYVYNVAKACDEGHCTAKDCAGVILYSAECATQVALDGIQCFGGNGYINDFPMGRFL 365
Query: 364 RDAKLYEIGAGTSEVRRIVIGRSINAEY 391
RDAKLYEIGAGTSEVRR+VIGR+ NA++
Sbjct: 366 RDAKLYEIGAGTSEVRRLVIGRAFNADF 393
>pdb|1JQI|A Chain A, Crystal Structure Of Rat Short Chain Acyl-Coa
Dehydrogenase Complexed With Acetoacetyl-Coa
pdb|1JQI|B Chain B, Crystal Structure Of Rat Short Chain Acyl-Coa
Dehydrogenase Complexed With Acetoacetyl-Coa
Length = 388
Score = 293 bits (749), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 155/383 (40%), Positives = 231/383 (60%), Gaps = 4/383 (1%)
Query: 10 DLTEEQNKLRETVASYCKTHITPIAADIDSTNDFKDLRKVWKDFGQLGLLGITVPEEFGG 69
+L E LR+T + + + PIAA +D + F + K G+LGLL + VPEE G
Sbjct: 9 ELPETHQMLRQTCRDFAEKELVPIAAQLDKEHLFPTSQV--KKMGELGLLAMDVPEELSG 66
Query: 70 SEMGYLDHVIAMEELSRSSASVGLSFVAHSNLCVNQINRHATKQQKEKYLPALCSGEKIG 129
+ + YL + IA+EE+SR AS G+ +++L + I + + QQK++++ +G+KIG
Sbjct: 67 AGLDYLAYSIALEEISRGCASTGVIMSVNNSLYLGPILKFGSSQQKQQWITPFTNGDKIG 126
Query: 130 CLAMSEPGSGSDVISMSLKAEKKGDMYVLNGNKFWITNGPDADIAVVYARTNPNADKKQH 189
C A+SEPG+GSD + S A ++GD +VLNG K WITN +A VV+A T+ + ++
Sbjct: 127 CFALSEPGNGSDAGAASTTAREEGDSWVLNGTKAWITNSWEASATVVFASTDRS--RQNK 184
Query: 190 GISTFIVEKGTPGFSKGKKLNKLGMRGSNTGELIFENCQVPAENLLGGENKGAYVLMSGL 249
GIS F+V TPG + GKK +KLG+R S+T LIFE+C++P ENLLG G + M L
Sbjct: 185 GISAFLVPMPTPGLTLGKKEDKLGIRASSTANLIFEDCRIPKENLLGEPGMGFKIAMQTL 244
Query: 250 DLERLVISAGPVGIMQACCDFAFNYVHERVQFGTRIGEFQLMQGKIADMHVALSASRAYL 309
D+ R+ I++ +GI QA D A Y R FG + + Q +Q K+ADM +AL ++R
Sbjct: 245 DMGRIGIASQALGIAQASLDCAVKYAENRHAFGAPLTKLQNIQFKLADMALALESARLLT 304
Query: 310 YSVAKACDRGSINSKECAGVFLVAAENAVKVALEAIQCLGGNGYINDYPTGRYLRDAKLY 369
+ A D +KE A L A+E A ++ +AIQ LGG GY+ + P RY RDA++
Sbjct: 305 WRAAMLKDNKKPFTKESAMAKLAASEAATAISHQAIQILGGMGYVTEMPAERYYRDARIT 364
Query: 370 EIGAGTSEVRRIVIGRSINAEYK 392
EI GTSE++R+VI + Y+
Sbjct: 365 EIYEGTSEIQRLVIAGHLLRSYR 387
>pdb|2VIG|A Chain A, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|B Chain B, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|C Chain C, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|D Chain D, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|E Chain E, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|F Chain F, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|G Chain G, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|H Chain H, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
Length = 391
Score = 290 bits (741), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 155/383 (40%), Positives = 229/383 (59%), Gaps = 4/383 (1%)
Query: 10 DLTEEQNKLRETVASYCKTHITPIAADIDSTNDFKDLRKVWKDFGQLGLLGITVPEEFGG 69
+L E L +T + + + PIAA +D + F + K G LGLL + VPEE GG
Sbjct: 5 ELPETHQMLLQTCRDFAEKELFPIAAQVDKEHLFPAAQV--KKMGGLGLLAMDVPEELGG 62
Query: 70 SEMGYLDHVIAMEELSRSSASVGLSFVAHSNLCVNQINRHATKQQKEKYLPALCSGEKIG 129
+ + YL + IAMEE+SR AS G+ +++L + I + +K+QK+ ++ SG+KIG
Sbjct: 63 AGLDYLAYAIAMEEISRGCASTGVIMSVNNSLYLGPILKFGSKEQKQAWVTPFTSGDKIG 122
Query: 130 CLAMSEPGSGSDVISMSLKAEKKGDMYVLNGNKFWITNGPDADIAVVYARTNPNADKKQH 189
C A+SEPG+GSD + S A +GD +VLNG K WITN +A AVV+A T+ K
Sbjct: 123 CFALSEPGNGSDAGAASTTARAEGDSWVLNGTKAWITNAWEASAAVVFASTDRALQNKS- 181
Query: 190 GISTFIVEKGTPGFSKGKKLNKLGMRGSNTGELIFENCQVPAENLLGGENKGAYVLMSGL 249
IS F+V TPG + GKK +KLG+RGS+T LIFE+C++P +++LG G + M L
Sbjct: 182 -ISAFLVPMPTPGLTLGKKEDKLGIRGSSTANLIFEDCRIPKDSILGEPGMGFKIAMQTL 240
Query: 250 DLERLVISAGPVGIMQACCDFAFNYVHERVQFGTRIGEFQLMQGKIADMHVALSASRAYL 309
D+ R+ I++ +GI Q D A NY R+ FG + + Q++Q K+ADM +AL ++R
Sbjct: 241 DMGRIGIASQALGIAQTALDCAVNYAENRMAFGAPLTKLQVIQFKLADMALALESARLLT 300
Query: 310 YSVAKACDRGSINSKECAGVFLVAAENAVKVALEAIQCLGGNGYINDYPTGRYLRDAKLY 369
+ A D KE A L A+E A ++ +AIQ LGG GY+ + P R+ RDA++
Sbjct: 301 WRAAMLKDNKKPFIKEAAMAKLAASEAATAISHQAIQILGGMGYVTEMPAERHYRDARIT 360
Query: 370 EIGAGTSEVRRIVIGRSINAEYK 392
EI GTSE++R+VI + Y+
Sbjct: 361 EIYEGTSEIQRLVIAGHLLRSYR 383
>pdb|1UKW|A Chain A, Crystal Structure Of Medium-Chain Acyl-Coa Dehydrogenase
From Thermus Thermophilus Hb8
pdb|1UKW|B Chain B, Crystal Structure Of Medium-Chain Acyl-Coa Dehydrogenase
From Thermus Thermophilus Hb8
Length = 379
Score = 263 bits (671), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 142/381 (37%), Positives = 216/381 (56%), Gaps = 5/381 (1%)
Query: 9 YDLTEEQNKLRETVASYCKTHITPIAADIDSTNDFKDLRKVWKDFGQLGLLGITVPEEFG 68
+ LTEEQ +L+ + K I P+A + D + V + ++GLL +PEE+G
Sbjct: 3 FSLTEEQRQLQALARRFAKEVILPVAQEYDEKEEVP--WPVIEKLHEVGLLNAIIPEEYG 60
Query: 69 GSEMGYLDHVIAMEELSRSSASVGLSFVAHSNLCVNQINRHATKQQKEKYLPALCSGEKI 128
G + LD VI EEL+ + + + S+L + + T++QKE++L L +
Sbjct: 61 GMGLKMLDEVIVGEELAYACMGI-YTIPMASDLGITPVLLAGTEEQKERFLRPLTEKPAL 119
Query: 129 GCLAMSEPGSGSDVISMSLKAEKKGDMYVLNGNKFWITNGPDADIAVVYARTNPNADKKQ 188
A+SEPG+GSD ++ +A ++GD YVLNG K WI+NG +A+ VV+A NP + +
Sbjct: 120 AAFALSEPGNGSDAAALKTRAIRQGDHYVLNGTKMWISNGGEAEWVVVFATVNP--ELRH 177
Query: 189 HGISTFIVEKGTPGFSKGKKLNKLGMRGSNTGELIFENCQVPAENLLGGENKGAYVLMSG 248
G+ +VE+GTPGF K K+G R S T EL+FE+ +VP EN LG E +G + M
Sbjct: 178 KGVVALVVERGTPGFKAIKIHGKMGQRASGTYELVFEDVKVPVENRLGEEGEGFKIAMQT 237
Query: 249 LDLERLVISAGPVGIMQACCDFAFNYVHERVQFGTRIGEFQLMQGKIADMHVALSASRAY 308
L+ R+ ++AG VG+ + D A Y ER FG I FQ +Q K+ DM + + +R Y
Sbjct: 238 LNKTRIPVAAGSVGVARRALDEARKYAKEREAFGEPIANFQAIQFKLVDMLIGIETARMY 297
Query: 309 LYSVAKACDRGSINSKECAGVFLVAAENAVKVALEAIQCLGGNGYINDYPTGRYLRDAKL 368
Y A D+G ++ A A+E A + A +AIQ GG GY+ ++P + LRD KL
Sbjct: 298 TYYAAWLADQGLPHAHASAIAKAYASEIAFEAANQAIQIHGGYGYVREFPVEKLLRDVKL 357
Query: 369 YEIGAGTSEVRRIVIGRSINA 389
+I GT+E++R++I R I A
Sbjct: 358 NQIYEGTNEIQRLIIARHILA 378
>pdb|2JIF|A Chain A, Structure Of Human Short-Branched Chain Acyl-Coa
Dehydrogenase (Acadsb)
pdb|2JIF|B Chain B, Structure Of Human Short-Branched Chain Acyl-Coa
Dehydrogenase (Acadsb)
pdb|2JIF|C Chain C, Structure Of Human Short-Branched Chain Acyl-Coa
Dehydrogenase (Acadsb)
pdb|2JIF|D Chain D, Structure Of Human Short-Branched Chain Acyl-Coa
Dehydrogenase (Acadsb)
Length = 404
Score = 254 bits (650), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 137/381 (35%), Positives = 219/381 (57%), Gaps = 5/381 (1%)
Query: 11 LTEEQNKLRETVASYCKTHITPIAADIDSTNDFKDLRKVWKDFGQLGLLGITVPEEFGGS 70
T+E+ ++ +V + + I P+ + +D + + + V + Q GL+GI V E+GG+
Sbjct: 29 FTDEEMMIKSSVKKFAQEQIAPLVSTMDENSKME--KSVIQGLFQQGLMGIEVDPEYGGT 86
Query: 71 EMGYLDHVIAMEELSRSSASVGLSFVAHSNLCVNQINRHATKQQKEKYLPALCSGEKIGC 130
+L V+ +EEL++ ASV + + L I +H T++QK YLP L + EK+G
Sbjct: 87 GASFLSTVLVIEELAKVDASVAVFCEIQNTLINTLIRKHGTEEQKATYLPQLTT-EKVGS 145
Query: 131 LAMSEPGSGSDVISMSLKAEKKGDMYVLNGNKFWITNGPDADIAVVYARTNPNADKKQHG 190
+SE G+GSD ++ +A+K+GD YVLNG+K WI++ A + +V A +P K G
Sbjct: 146 FCLSEAGAGSDSFALKTRADKEGDYYVLNGSKMWISSAEHAGLFLVMANVDPTIGYK--G 203
Query: 191 ISTFIVEKGTPGFSKGKKLNKLGMRGSNTGELIFENCQVPAENLLGGENKGAYVLMSGLD 250
I++F+V++ TPG GK NKLG+R S+T L FEN +VP N+LG G + L+
Sbjct: 204 ITSFLVDRDTPGLHIGKPENKLGLRASSTCPLTFENVKVPEANILGQIGHGYKYAIGSLN 263
Query: 251 LERLVISAGPVGIMQACCDFAFNYVHERVQFGTRIGEFQLMQGKIADMHVALSASRAYLY 310
R+ I+A +G+ Q C D+ Y+ ER+QFG R+ +FQ +Q ++A + L A+R Y
Sbjct: 264 EGRIGIAAQMLGLAQGCFDYTIPYIKERIQFGKRLFDFQGLQHQVAHVATQLEAARLLTY 323
Query: 311 SVAKACDRGSINSKECAGVFLVAAENAVKVALEAIQCLGGNGYINDYPTGRYLRDAKLYE 370
+ A+ + G KE + A+E A + + I+ +GG GY DYP +Y RDAK+
Sbjct: 324 NAARLLEAGKPFIKEASMAKYYASEIAGQTTSKCIEWMGGVGYTKDYPVEKYFRDAKIGT 383
Query: 371 IGAGTSEVRRIVIGRSINAEY 391
I G S ++ I + I+AEY
Sbjct: 384 IYEGASNIQLNTIAKHIDAEY 404
>pdb|2DVL|A Chain A, Crystal Structure Of Project Tt0160 From Thermus
Thermophilus Hb8
pdb|2DVL|B Chain B, Crystal Structure Of Project Tt0160 From Thermus
Thermophilus Hb8
Length = 372
Score = 244 bits (623), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 150/380 (39%), Positives = 216/380 (56%), Gaps = 15/380 (3%)
Query: 11 LTEEQNKLRETVASYCKTHITPIAADIDSTNDFKDLRKVW---KDFGQLGLLGITVPEEF 67
LT+EQ + + V + + P+A + D ++ W K +LGLLG+T PEE+
Sbjct: 3 LTQEQRLVLDAVRRVAREVLYPLAPEYDRKAEYP-----WPQLKALAELGLLGMTTPEEW 57
Query: 68 GGSEMGYLDHVIAMEELSRSSASVGLSFVAHSNLCVNQINRHATKQQKEKYLPALCSGEK 127
GG + + +A+EEL+ + SV + S L + R ++ QK +YL L GE
Sbjct: 58 GGVGLDSVTWALALEELAAADPSVAVIVSVTSGLPQYMLLRFGSEAQKRRYLVPLARGEW 117
Query: 128 IGCLAMSEPGSGSDVISMSLKAEKKGDMYVLNGNKFWITNGPDADIAVVYARTNPNADKK 187
IG ++EP +GSD S+ +A + +VLNG K WIT+ A + VV ART
Sbjct: 118 IGAFCLTEPQAGSDAKSLRAEARRVKGGFVLNGVKSWITSAGHAHLYVVMART------- 170
Query: 188 QHGISTFIVEKGTPGFSKGKKLNKLGMRGSNTGELIFENCQVPAENLLGGENKGAYVLMS 247
+ GIS F+VEKGTPG S G+ K+G+ ++T E+ E VP ENLLG E +G ++
Sbjct: 171 EKGISAFLVEKGTPGLSFGRPEEKMGLHAAHTAEVRLEEVFVPEENLLGEEGRGLAYALA 230
Query: 248 GLDLERLVISAGPVGIMQACCDFAFNYVHERVQFGTRIGEFQLMQGKIADMHVALSASRA 307
GLD R+ ++A VGI + + A Y ER QFG ++ E Q + KIADMHV ++A+RA
Sbjct: 231 GLDSGRVGVAAQAVGIARGAFEIAKAYAEEREQFGKKLKEHQAIAFKIADMHVKIAAARA 290
Query: 308 YLYSVAKACDRGSINSKECAGVFLVAAENAVKVALEAIQCLGGNGYINDYPTGRYLRDAK 367
+ A+ DRG + E + L A+ AV+V EA+Q LGG GY DY RY RDAK
Sbjct: 291 LVLEAARKKDRGERFTLEASAAKLFASAAAVEVTREAVQVLGGYGYHRDYRVERYYRDAK 350
Query: 368 LYEIGAGTSEVRRIVIGRSI 387
+ EI GTSE++R+VI R +
Sbjct: 351 VTEIYEGTSEIQRLVIAREL 370
>pdb|2PG0|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase From
Geobacillus Kaustophilus
pdb|2PG0|B Chain B, Crystal Structure Of Acyl-Coa Dehydrogenase From
Geobacillus Kaustophilus
Length = 385
Score = 243 bits (620), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 135/379 (35%), Positives = 205/379 (54%), Gaps = 5/379 (1%)
Query: 11 LTEEQNKLRETVASYCKTHITPIAADIDSTNDFKDLRKVWKDFGQLGLLGITVPEEFGGS 70
L EE + R + + P D + R W G+ G L V E++GG
Sbjct: 10 LREEHHMFRAAFRKFLEKEAYPHYNDWEKRGIIP--RSFWAKMGENGFLCPWVDEKYGGL 67
Query: 71 EMGYLDHVIAMEELSRSSAS-VGLSFVAHSNLCVNQINRHATKQQKEKYLPALCSGEKIG 129
+ V+ EEL + +S VG+ H+++ I + T++QK+K+LP +GE I
Sbjct: 68 NADFAYSVVINEELEKVGSSLVGIGL--HNDIVTPYIASYGTEEQKQKWLPKCVTGELIT 125
Query: 130 CLAMSEPGSGSDVISMSLKAEKKGDMYVLNGNKFWITNGPDADIAVVYARTNPNADKKQH 189
+AM+EPG+GSD+ ++S A K GD Y++NG K +ITNG AD+ VV +T+P A
Sbjct: 126 AIAMTEPGAGSDLANISTTAVKDGDYYIVNGQKTFITNGIHADLIVVACKTDPQAKPPHR 185
Query: 190 GISTFIVEKGTPGFSKGKKLNKLGMRGSNTGELIFENCQVPAENLLGGENKGAYVLMSGL 249
GIS +VE+ TPGF++G+KL K+G+ +T EL F++ +VPA NLLG E KG Y LM L
Sbjct: 186 GISLLVVERDTPGFTRGRKLEKVGLHAQDTAELFFQDAKVPAYNLLGEEGKGFYYLMEKL 245
Query: 250 DLERLVISAGPVGIMQACCDFAFNYVHERVQFGTRIGEFQLMQGKIADMHVALSASRAYL 309
ERLV++ + YV +R FG R+ EFQ +Q ++A+M ++ R ++
Sbjct: 246 QQERLVVAIAAQTAAEVMFSLTKQYVKQRTAFGKRVSEFQTVQFRLAEMATEIALGRTFV 305
Query: 310 YSVAKACDRGSINSKECAGVFLVAAENAVKVALEAIQCLGGNGYINDYPTGRYLRDAKLY 369
V + G E + E A +VA EA+Q GG GY+ +Y R RD +
Sbjct: 306 DRVIEEHMAGKQIVTEVSMAKWWITEMAKRVAAEAMQLHGGYGYMEEYEIARRYRDIPVS 365
Query: 370 EIGAGTSEVRRIVIGRSIN 388
I AGT+E+ + +I R ++
Sbjct: 366 AIYAGTNEMMKTIIARQLD 384
>pdb|1BUC|A Chain A, Three-Dimensional Structure Of Butyryl-Coa Dehydrogenase
From Megasphaera Elsdenii
pdb|1BUC|B Chain B, Three-Dimensional Structure Of Butyryl-Coa Dehydrogenase
From Megasphaera Elsdenii
Length = 383
Score = 241 bits (616), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 140/383 (36%), Positives = 222/383 (57%), Gaps = 8/383 (2%)
Query: 9 YDLTEEQNKLRETVASYCKTHITPIAADIDSTNDFKDLRKVWKDFGQLGLLGITVPEEFG 68
++LT+ Q + + + + P + D + +++ + LG+ G E++G
Sbjct: 3 FNLTDIQQDFLKLAHDFGEKKLAPTVTERDHKGIYD--KELIDELLSLGITGAYFEEKYG 60
Query: 69 GSEMG---YLDHVIAMEELSRSSASVGLSFVAHSNLCVNQINRHATKQQKEKYLPALCSG 125
GS L +++A+EEL++ A V ++ A +LC N I + T+ QKEK+L L G
Sbjct: 61 GSGDDGGDVLSYILAVEELAKYDAGVAITLSATVSLCANPIWQFGTEAQKEKFLVPLVEG 120
Query: 126 EKIGCLAMSEPGSGSDVISMSLKAEKKGD-MYVLNGNKFWITNGPDADIAVVYARTNPNA 184
K+G ++EP +G+D A K D Y LNG+K +ITNG ADI +V+A T+ +
Sbjct: 121 TKLGAFGLTEPNAGTDASGQQTIATKNDDGTYTLNGSKIFITNGGAADIYIVFAMTDKS- 179
Query: 185 DKKQHGISTFIVEKGTPGFSKGKKLNKLGMRGSNTGELIFENCQVPAENLLGGENKGAYV 244
K HGI+ FI+E GTPGF+ GKK +K+G+ S T EL+F++ +VPAEN+LG E KG +
Sbjct: 180 -KGNHGITAFILEDGTPGFTYGKKEDKMGIHTSQTMELVFQDVKVPAENMLGEEGKGFKI 238
Query: 245 LMSGLDLERLVISAGPVGIMQACCDFAFNYVHERVQFGTRIGEFQLMQGKIADMHVALSA 304
M LD R+ ++A +GI +A A Y +RVQFG + +FQ + K+ADM + + A
Sbjct: 239 AMMTLDGGRIGVAAQALGIAEAALADAVEYSKQRVQFGKPLCKFQSISFKLADMKMQIEA 298
Query: 305 SRAYLYSVAKACDRGSINSKECAGVFLVAAENAVKVALEAIQCLGGNGYINDYPTGRYLR 364
+R +Y A G + + A VA++ A++V EA+Q GG GY +YP R++R
Sbjct: 299 ARNLVYKAACKKQEGKPFTVDAAIAKRVASDVAMRVTTEAVQIFGGYGYSEEYPVARHMR 358
Query: 365 DAKLYEIGAGTSEVRRIVIGRSI 387
DAK+ +I GT+EV+ +V G ++
Sbjct: 359 DAKITQIYEGTNEVQLMVTGGAL 381
>pdb|3MPI|A Chain A, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
Glutaryl-Coa Complex
pdb|3MPI|B Chain B, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
Glutaryl-Coa Complex
pdb|3MPI|C Chain C, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
Glutaryl-Coa Complex
pdb|3MPI|D Chain D, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
Glutaryl-Coa Complex
pdb|3MPJ|A Chain A, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
pdb|3MPJ|B Chain B, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
pdb|3MPJ|D Chain D, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
pdb|3MPJ|E Chain E, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
pdb|3MPJ|F Chain F, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
pdb|3MPJ|G Chain G, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
Length = 397
Score = 238 bits (606), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 143/379 (37%), Positives = 214/379 (56%), Gaps = 8/379 (2%)
Query: 9 YDLTEEQNKLRETVASYCKTHITPIAADIDSTNDFKDLRKVWKDFGQLGLLGITVPEEFG 68
++L++E L++ V ++ I P A D+ N F V + G+LG G +PEE+G
Sbjct: 3 FNLSKELQMLQKEVRNFVNKKIVPFADQWDNENHFPYEEAV-RPMGELGFFGTVIPEEYG 61
Query: 69 GSEM--GYLDHVIAMEELSRSSASVGLSFVAHSNLCVNQINRHATKQQKEKYLPALCSGE 126
G M G+L +I EE++R S+++ + C I + ++ K+KY+P L S E
Sbjct: 62 GEGMDQGWLAAMIVTEEIARGSSALRVQLNMEVLGCAYTILTYGSEALKKKYVPKLSSAE 121
Query: 127 KIGCLAMSEPGSGSDVISMSLKAEKKGDMYVLNGNKFWITNGPDADIAVVYARTNPNADK 186
+G ++EP +GSDV++MS AE KGD ++LNG+K WI+N AD+ + YA T+ A
Sbjct: 122 FLGGFGITEPDAGSDVMAMSSTAEDKGDHWLLNGSKTWISNAAQADVLIYYAYTDKAAGS 181
Query: 187 KQHGISTFIVE-KGTPGFSKGKKLNKLGMRGSNTGELIFENCQVPAENLLGGENKGAYVL 245
+ G+S F++E + PG K L KLG S TGEL +N +VP EN+LG GA ++
Sbjct: 182 R--GLSAFVIEPRNFPGI-KTSNLEKLGSHASPTGELFLDNVKVPKENILGKPGDGARIV 238
Query: 246 MSGLDLERLVISAGPVGIMQACCDFAFNYVHERVQFGTRIGEFQLMQGKIADMHVALSAS 305
L+ RL +AG VG+ QAC D A Y +ER QFG IG+FQ+ Q IA M V + A+
Sbjct: 239 FGSLNHTRLSAAAGGVGLAQACLDAAIKYCNERRQFGKPIGDFQMNQDMIAQMAVEVEAA 298
Query: 306 RAYLYSVAKACDRGSINSK-ECAGVFLVAAENAVKVALEAIQCLGGNGYINDYPTGRYLR 364
R Y A A D G +N+ + A A E K A A++ LG GY +YP R+ R
Sbjct: 299 RLLAYKAAAAKDEGRLNNGLDVAMAKYAAGEAVSKCANYAMRILGAYGYSTEYPVARFYR 358
Query: 365 DAKLYEIGAGTSEVRRIVI 383
DA Y + G++ + +++I
Sbjct: 359 DAPTYYMVEGSANICKMII 377
>pdb|3MDD|A Chain A, Crystal Structures Of Medium Chain Acyl-Coa Dehydrogenase
From Pig Liver Mitochondria With And Without Substrate
pdb|3MDD|B Chain B, Crystal Structures Of Medium Chain Acyl-Coa Dehydrogenase
From Pig Liver Mitochondria With And Without Substrate
pdb|3MDE|A Chain A, Crystal Structures Of Medium Chain Acyl-Coa Dehydrogenase
From Pig Liver Mitochondria With And Without Substrate
pdb|3MDE|B Chain B, Crystal Structures Of Medium Chain Acyl-Coa Dehydrogenase
From Pig Liver Mitochondria With And Without Substrate
Length = 385
Score = 236 bits (602), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 137/387 (35%), Positives = 211/387 (54%), Gaps = 8/387 (2%)
Query: 9 YDLTEEQNKLRETVASYCKTHITPIAADIDSTNDFKD--LRKVWKDFGQLGLLGITVPEE 66
++LTE+Q + + T + + I P+AA+ D T ++ L++ W +LGL+ +PE
Sbjct: 4 FELTEQQKEFQATARKFAREEIIPVAAEYDRTGEYPVPLLKRAW----ELGLMNTHIPES 59
Query: 67 FGGSEMGYLDHVIAMEELSRSSASVGLSFVAHSNLCVNQINRHATKQQKEKYLPALCSGE 126
FGG +G +D + EEL+ V + A++ V I +QQK KYL +
Sbjct: 60 FGGLGLGIIDSCLITEELAYGCTGVQTAIEANTLGQVPLIIGGNYQQQK-KYLGRMTEEP 118
Query: 127 KIGCLAMSEPGSGSDVISMSLKAEKKGDMYVLNGNKFWITNGPDADIAVVYARTNPNADK 186
+ ++EPG+GSDV + KAEKKGD Y++NG K WITNG A+ + AR++P+
Sbjct: 119 LMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKANWYFLLARSDPDPKA 178
Query: 187 K-QHGISTFIVEKGTPGFSKGKKLNKLGMRGSNTGELIFENCQVPAENLLGGENKGAYVL 245
+ FIVE TPG G+K +G R S+T ++FE+ +VP EN+L GE G +
Sbjct: 179 PASKAFTGFIVEADTPGVQIGRKEINMGQRCSDTRGIVFEDVRVPKENVLTGEGAGFKIA 238
Query: 246 MSGLDLERLVISAGPVGIMQACCDFAFNYVHERVQFGTRIGEFQLMQGKIADMHVALSAS 305
M D R ++AG VG+ Q D A Y ER FG + E Q + +ADM + + +
Sbjct: 239 MGTFDKTRPPVAAGAVGLAQRALDEATKYALERKTFGKLLAEHQGISFLLADMAMKVELA 298
Query: 306 RAYLYSVAKACDRGSINSKECAGVFLVAAENAVKVALEAIQCLGGNGYINDYPTGRYLRD 365
R A D G N+ + AA+ A ++A +A+Q GGNG+ +YP + +RD
Sbjct: 299 RLSYQRAAWEIDSGRRNTYYASIAKAYAADIANQLATDAVQVFGGNGFNTEYPVEKLMRD 358
Query: 366 AKLYEIGAGTSEVRRIVIGRSINAEYK 392
AK+Y+I GT++++RI+I R YK
Sbjct: 359 AKIYQIYEGTAQIQRIIIAREHIGRYK 385
>pdb|1UDY|A Chain A, Medium-Chain Acyl-Coa Dehydrogenase With
3-Thiaoctanoyl-Coa
pdb|1UDY|B Chain B, Medium-Chain Acyl-Coa Dehydrogenase With
3-Thiaoctanoyl-Coa
pdb|1UDY|C Chain C, Medium-Chain Acyl-Coa Dehydrogenase With
3-Thiaoctanoyl-Coa
pdb|1UDY|D Chain D, Medium-Chain Acyl-Coa Dehydrogenase With
3-Thiaoctanoyl-Coa
Length = 396
Score = 236 bits (601), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 137/387 (35%), Positives = 211/387 (54%), Gaps = 8/387 (2%)
Query: 9 YDLTEEQNKLRETVASYCKTHITPIAADIDSTNDFKD--LRKVWKDFGQLGLLGITVPEE 66
++LTE+Q + + T + + I P+AA+ D T ++ L++ W +LGL+ +PE
Sbjct: 14 FELTEQQKEFQATARKFAREEIIPVAAEYDRTGEYPVPLLKRAW----ELGLMNTHIPES 69
Query: 67 FGGSEMGYLDHVIAMEELSRSSASVGLSFVAHSNLCVNQINRHATKQQKEKYLPALCSGE 126
FGG +G +D + EEL+ V + A++ V I +QQK KYL +
Sbjct: 70 FGGLGLGIIDSCLITEELAYGCTGVQTAIEANTLGQVPLIIGGNYQQQK-KYLGRMTEEP 128
Query: 127 KIGCLAMSEPGSGSDVISMSLKAEKKGDMYVLNGNKFWITNGPDADIAVVYARTNPNADK 186
+ ++EPG+GSDV + KAEKKGD Y++NG K WITNG A+ + AR++P+
Sbjct: 129 LMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKANWYFLLARSDPDPKA 188
Query: 187 K-QHGISTFIVEKGTPGFSKGKKLNKLGMRGSNTGELIFENCQVPAENLLGGENKGAYVL 245
+ FIVE TPG G+K +G R S+T ++FE+ +VP EN+L GE G +
Sbjct: 189 PASKAFTGFIVEADTPGVQIGRKEINMGQRCSDTRGIVFEDVRVPKENVLTGEGAGFKIA 248
Query: 246 MSGLDLERLVISAGPVGIMQACCDFAFNYVHERVQFGTRIGEFQLMQGKIADMHVALSAS 305
M D R ++AG VG+ Q D A Y ER FG + E Q + +ADM + + +
Sbjct: 249 MGTFDKTRPPVAAGAVGLAQRALDEATKYALERKTFGKLLAEHQGISFLLADMAMKVELA 308
Query: 306 RAYLYSVAKACDRGSINSKECAGVFLVAAENAVKVALEAIQCLGGNGYINDYPTGRYLRD 365
R A D G N+ + AA+ A ++A +A+Q GGNG+ +YP + +RD
Sbjct: 309 RLSYQRAAWEIDSGRRNTYYASIAKAYAADIANQLATDAVQVFGGNGFNTEYPVEKLMRD 368
Query: 366 AKLYEIGAGTSEVRRIVIGRSINAEYK 392
AK+Y+I GT++++RI+I R YK
Sbjct: 369 AKIYQIYEGTAQIQRIIIAREHIGRYK 395
>pdb|3PFD|A Chain A, Crystal Structure Of An Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Reduced Flavin
Adenine Dinucleotide Solved By Combined Iodide Ion Sad
Mr
pdb|3PFD|B Chain B, Crystal Structure Of An Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Reduced Flavin
Adenine Dinucleotide Solved By Combined Iodide Ion Sad
Mr
pdb|3PFD|C Chain C, Crystal Structure Of An Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Reduced Flavin
Adenine Dinucleotide Solved By Combined Iodide Ion Sad
Mr
pdb|3PFD|D Chain D, Crystal Structure Of An Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Reduced Flavin
Adenine Dinucleotide Solved By Combined Iodide Ion Sad
Mr
Length = 393
Score = 235 bits (600), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 138/386 (35%), Positives = 211/386 (54%), Gaps = 16/386 (4%)
Query: 8 IYDLTEEQNKLRETVASYCKTHITPIAADIDSTNDFKDLRKVWKDFGQLGLLGITVPEEF 67
++ L EE LRE + + + I P AA++D F + + G I VPEE+
Sbjct: 16 LFQLPEEHIALREAIRALAEKEIAPYAAEVDEKARFPE--EALAALNSSGFSAIHVPEEY 73
Query: 68 GGSEMGYLDHVIAMEELSRSSASVGLSFVAHSNLCVNQINRHATKQQKEKYLPALCSGEK 127
GG + I +EE++R S L A + L + +++ K++ LPA+ SGE
Sbjct: 74 GGQGADSVATCIVIEEVARVDCSASL-IPAVNKLGTMGLILRGSEELKKQVLPAVASGEA 132
Query: 128 IGCLAMSEPGSGSDVISMSLKAEKKGDMYVLNGNKFWITNGPDADIAVVYARTNPNADKK 187
+ A+SE +GSD SM +A GD ++LNG+K WITNG + V A T+P DK
Sbjct: 133 MASYALSEREAGSDAASMRTRAVADGDDWILNGSKCWITNGGKSTWYTVMAVTDP--DKG 190
Query: 188 QHGISTFIVEKGTPGFSKGKKLNKLGMRGSNTGELIFENCQVPAENLLGGENKGAYVLMS 247
+GIS F+V K GF+ G K KLG++GS T EL FENC++P + ++G G ++
Sbjct: 191 ANGISAFMVHKDDEGFTVGPKERKLGIKGSPTTELYFENCRIPGDRIIGEPGTGFKTALA 250
Query: 248 GLDLERLVISAGPVGIMQACCDFAFNYVHERVQFGTRIGEFQLMQGKIADMHVALSASRA 307
LD R I A VGI Q D A Y ER QFG + + Q +Q +ADM + + A+R
Sbjct: 251 TLDHTRPTIGAQAVGIAQGALDAAIAYTKERKQFGRPVSDNQGVQFMLADMAMKIEAARL 310
Query: 308 YLYSVAKACDRGSIN------SKECAGVFLVAAENAVKVALEAIQCLGGNGYINDYPTGR 361
+YS A +RG + + +C A++ A++V +A+Q GG GY D+P R
Sbjct: 311 MVYSAAARAERGEGDLGFISAASKC-----FASDVAMEVTTDAVQLFGGYGYTQDFPVER 365
Query: 362 YLRDAKLYEIGAGTSEVRRIVIGRSI 387
+RDAK+ +I GT++++R+V+ R++
Sbjct: 366 MMRDAKITQIYEGTNQIQRVVMSRAL 391
>pdb|1EGD|A Chain A, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGD|B Chain B, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGD|C Chain C, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGD|D Chain D, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGC|A Chain A, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase Complexed With Octanoyl-Coa
pdb|1EGC|B Chain B, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase Complexed With Octanoyl-Coa
pdb|1EGC|C Chain C, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase Complexed With Octanoyl-Coa
pdb|1EGC|D Chain D, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase Complexed With Octanoyl-Coa
Length = 396
Score = 234 bits (597), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 135/387 (34%), Positives = 211/387 (54%), Gaps = 8/387 (2%)
Query: 9 YDLTEEQNKLRETVASYCKTHITPIAADIDSTNDFKD--LRKVWKDFGQLGLLGITVPEE 66
++ TE+Q + + T + + I P+AA+ D T ++ +R+ W +LGL+ +PE
Sbjct: 14 FEFTEQQKEFQATARKFAREEIIPVAAEYDKTGEYPVPLIRRAW----ELGLMNTHIPEN 69
Query: 67 FGGSEMGYLDHVIAMEELSRSSASVGLSFVAHSNLCVNQINRHATKQQKEKYLPALCSGE 126
GG +G D + EEL+ V + +S L I QQK+KYL +
Sbjct: 70 CGGLGLGTFDACLISEELAYGCTGVQTAIEGNS-LGQMPIIIAGNDQQKKKYLGRMTEEP 128
Query: 127 KIGCLAMSEPGSGSDVISMSLKAEKKGDMYVLNGNKFWITNGPDADIAVVYARTNPNADK 186
+ ++EPG+GSDV + KAEKKGD Y++NG K WITNG A+ + AR++P+
Sbjct: 129 LMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKANWYFLLARSDPDPKA 188
Query: 187 KQH-GISTFIVEKGTPGFSKGKKLNKLGMRGSNTGELIFENCQVPAENLLGGENKGAYVL 245
+ + FIVE TPG G+K +G R S+T ++FE+ +VP EN+L G+ G V
Sbjct: 189 PANKAFTGFIVEADTPGIQIGRKELNMGQRCSDTRGIVFEDVKVPKENVLIGDGAGFKVA 248
Query: 246 MSGLDLERLVISAGPVGIMQACCDFAFNYVHERVQFGTRIGEFQLMQGKIADMHVALSAS 305
M D ER V++AG VG+ Q D A Y ER FG + E Q + +A+M + + +
Sbjct: 249 MGAFDKERPVVAAGAVGLAQRALDEATKYALERKTFGKLLVEHQAISFMLAEMAMKVELA 308
Query: 306 RAYLYSVAKACDRGSINSKECAGVFLVAAENAVKVALEAIQCLGGNGYINDYPTGRYLRD 365
R A D G N+ + A + A ++A +A+Q LGGNG+ +YP + +RD
Sbjct: 309 RMSYQRAAWEVDSGRRNTYYASIAKAFAGDIANQLATDAVQILGGNGFNTEYPVEKLMRD 368
Query: 366 AKLYEIGAGTSEVRRIVIGRSINAEYK 392
AK+Y+I GTS+++R+++ R +YK
Sbjct: 369 AKIYQIYGGTSQIQRLIVAREHIDKYK 395
>pdb|1EGE|A Chain A, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGE|B Chain B, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGE|C Chain C, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGE|D Chain D, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1T9G|A Chain A, Structure Of The Human Mcad:etf Complex
pdb|1T9G|B Chain B, Structure Of The Human Mcad:etf Complex
pdb|1T9G|C Chain C, Structure Of The Human Mcad:etf Complex
pdb|1T9G|D Chain D, Structure Of The Human Mcad:etf Complex
Length = 396
Score = 232 bits (591), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 134/387 (34%), Positives = 210/387 (54%), Gaps = 8/387 (2%)
Query: 9 YDLTEEQNKLRETVASYCKTHITPIAADIDSTNDFKD--LRKVWKDFGQLGLLGITVPEE 66
++ TE+Q + + T + + I P+AA+ D T ++ +R+ W +LGL+ +PE
Sbjct: 14 FEFTEQQKEFQATARKFAREEIIPVAAEYDKTGEYPVPLIRRAW----ELGLMNTHIPEN 69
Query: 67 FGGSEMGYLDHVIAMEELSRSSASVGLSFVAHSNLCVNQINRHATKQQKEKYLPALCSGE 126
GG +G D + EEL+ V + +S L I QQK+KYL +
Sbjct: 70 CGGLGLGTFDACLISEELAYGCTGVQTAIEGNS-LGQMPIIIAGNDQQKKKYLGRMTEEP 128
Query: 127 KIGCLAMSEPGSGSDVISMSLKAEKKGDMYVLNGNKFWITNGPDADIAVVYARTNPNADK 186
+ ++EPG+GSDV + KAEKKGD Y++NG K WITNG A+ + AR++P+
Sbjct: 129 LMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKANWYFLLARSDPDPKA 188
Query: 187 KQH-GISTFIVEKGTPGFSKGKKLNKLGMRGSNTGELIFENCQVPAENLLGGENKGAYVL 245
+ + FIVE TPG G+K +G R S+T ++FE+ +VP EN+L G+ G V
Sbjct: 189 PANKAFTGFIVEADTPGIQIGRKELNMGQRCSDTRGIVFEDVKVPKENVLIGDGAGFKVA 248
Query: 246 MSGLDLERLVISAGPVGIMQACCDFAFNYVHERVQFGTRIGEFQLMQGKIADMHVALSAS 305
M D R V++AG VG+ Q D A Y ER FG + E Q + +A+M + + +
Sbjct: 249 MGAFDKTRPVVAAGAVGLAQRALDEATKYALERKTFGKLLVEHQAISFMLAEMAMKVELA 308
Query: 306 RAYLYSVAKACDRGSINSKECAGVFLVAAENAVKVALEAIQCLGGNGYINDYPTGRYLRD 365
R A D G N+ + A + A ++A +A+Q LGGNG+ +YP + +RD
Sbjct: 309 RMSYQRAAWEVDSGRRNTYYASIAKAFAGDIANQLATDAVQILGGNGFNTEYPVEKLMRD 368
Query: 366 AKLYEIGAGTSEVRRIVIGRSINAEYK 392
AK+Y+I GTS+++R+++ R +YK
Sbjct: 369 AKIYQIYEGTSQIQRLIVAREHIDKYK 395
>pdb|2A1T|A Chain A, Structure Of The Human Mcad:etf E165betaa Complex
pdb|2A1T|B Chain B, Structure Of The Human Mcad:etf E165betaa Complex
pdb|2A1T|C Chain C, Structure Of The Human Mcad:etf E165betaa Complex
pdb|2A1T|D Chain D, Structure Of The Human Mcad:etf E165betaa Complex
Length = 421
Score = 231 bits (589), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 134/387 (34%), Positives = 210/387 (54%), Gaps = 8/387 (2%)
Query: 9 YDLTEEQNKLRETVASYCKTHITPIAADIDSTNDFKD--LRKVWKDFGQLGLLGITVPEE 66
++ TE+Q + + T + + I P+AA+ D T ++ +R+ W +LGL+ +PE
Sbjct: 39 FEFTEQQKEFQATARKFAREEIIPVAAEYDKTGEYPVPLIRRAW----ELGLMNTHIPEN 94
Query: 67 FGGSEMGYLDHVIAMEELSRSSASVGLSFVAHSNLCVNQINRHATKQQKEKYLPALCSGE 126
GG +G D + EEL+ V + +S L I QQK+KYL +
Sbjct: 95 CGGLGLGTFDACLISEELAYGCTGVQTAIEGNS-LGQMPIIIAGNDQQKKKYLGRMTEEP 153
Query: 127 KIGCLAMSEPGSGSDVISMSLKAEKKGDMYVLNGNKFWITNGPDADIAVVYARTNPNADK 186
+ ++EPG+GSDV + KAEKKGD Y++NG K WITNG A+ + AR++P+
Sbjct: 154 LMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKANWYFLLARSDPDPKA 213
Query: 187 KQH-GISTFIVEKGTPGFSKGKKLNKLGMRGSNTGELIFENCQVPAENLLGGENKGAYVL 245
+ + FIVE TPG G+K +G R S+T ++FE+ +VP EN+L G+ G V
Sbjct: 214 PANKAFTGFIVEADTPGIQIGRKELNMGQRCSDTRGIVFEDVKVPKENVLIGDGAGFKVA 273
Query: 246 MSGLDLERLVISAGPVGIMQACCDFAFNYVHERVQFGTRIGEFQLMQGKIADMHVALSAS 305
M D R V++AG VG+ Q D A Y ER FG + E Q + +A+M + + +
Sbjct: 274 MGAFDKTRPVVAAGAVGLAQRALDEATKYALERKTFGKLLVEHQAISFMLAEMAMKVELA 333
Query: 306 RAYLYSVAKACDRGSINSKECAGVFLVAAENAVKVALEAIQCLGGNGYINDYPTGRYLRD 365
R A D G N+ + A + A ++A +A+Q LGGNG+ +YP + +RD
Sbjct: 334 RMSYQRAAWEVDSGRRNTYYASIAKAFAGDIANQLATDAVQILGGNGFNTEYPVEKLMRD 393
Query: 366 AKLYEIGAGTSEVRRIVIGRSINAEYK 392
AK+Y+I GTS+++R+++ R +YK
Sbjct: 394 AKIYQIYEGTSQIQRLIVAREHIDKYK 420
>pdb|1WS9|A Chain A, Crystal Structure Of Project Id Tt0172 From Thermus
Thermophilus Hb8
pdb|1WS9|B Chain B, Crystal Structure Of Project Id Tt0172 From Thermus
Thermophilus Hb8
pdb|2CX9|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase
pdb|2CX9|B Chain B, Crystal Structure Of Acyl-Coa Dehydrogenase
pdb|2CX9|C Chain C, Crystal Structure Of Acyl-Coa Dehydrogenase
pdb|2CX9|D Chain D, Crystal Structure Of Acyl-Coa Dehydrogenase
pdb|2D29|A Chain A, Structural Study On Project Id Tt0172 From Thermus
Thermophilus Hb8
pdb|2D29|B Chain B, Structural Study On Project Id Tt0172 From Thermus
Thermophilus Hb8
Length = 387
Score = 221 bits (562), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 145/377 (38%), Positives = 206/377 (54%), Gaps = 6/377 (1%)
Query: 14 EQNKLRETVASYCKTHITPIAADIDSTNDFK-DLRKVWKDFGQLGLLGITVPEEFGGSEM 72
E+ ++ + K + P AA+ D T F DL + +FG G L VPE +GG+ +
Sbjct: 10 EERQVLGPFREFLKAEVAPGAAERDRTGAFPWDLVRKLAEFGVFGAL---VPEAYGGAGL 66
Query: 73 GYLDHVIAMEELSRSSASVGLSFVAHSNLCVNQINRHATKQQKEKYLPALCSGEKIGCLA 132
+E ++ ++ L+ +H++L I ++ QKE +LP L SGE +G
Sbjct: 67 STRLFARMVEAIAYYDGALALTVASHNSLATGHILLAGSEAQKEAFLPKLASGEALGAWG 126
Query: 133 MSEPGSGSDVISMSLKAEKKGDMYVLNGNKFWITNGPDADIAVVYARTNP--NADKKQHG 190
++EPGSGSD ++ KAEK + LNG K +IT G A + VV ART+P + ++K G
Sbjct: 127 LTEPGSGSDAAALKTKAEKVEGGWRLNGTKQFITQGSVAGVYVVMARTDPPPSPERKHQG 186
Query: 191 ISTFIVEKGTPGFSKGKKLNKLGMRGSNTGELIFENCQVPAENLLGGENKGAYVLMSGLD 250
IS F + G G+K KLG+ S+T +LI E+ VP E LLG KG Y ++ LD
Sbjct: 187 ISAFAFFRPERGLKVGRKEEKLGLTASDTAQLILEDLFVPEEALLGERGKGFYDVLRVLD 246
Query: 251 LERLVISAGPVGIMQACCDFAFNYVHERVQFGTRIGEFQLMQGKIADMHVALSASRAYLY 310
R+ I+A VG+ QA D+A Y R FG I EF+ + K+A+ L A+R
Sbjct: 247 GGRIGIAAMAVGLGQAALDYALAYAKGREAFGRPIAEFEGVSFKLAEAATELEAARLLYL 306
Query: 311 SVAKACDRGSINSKECAGVFLVAAENAVKVALEAIQCLGGNGYINDYPTGRYLRDAKLYE 370
A+ D G + E A L A+E AVK EAIQ LGG GY+ DYP RY RDA+L
Sbjct: 307 KAAELKDAGRPFTLEAAQAKLFASEAAVKACDEAIQILGGYGYVKDYPVERYWRDARLTR 366
Query: 371 IGAGTSEVRRIVIGRSI 387
IG GTSE+ ++VI R +
Sbjct: 367 IGEGTSEILKLVIARRL 383
>pdb|1RX0|A Chain A, Crystal Structure Of Isobutyryl-Coa Dehydrogenase
Complexed With SubstrateLIGAND.
pdb|1RX0|B Chain B, Crystal Structure Of Isobutyryl-Coa Dehydrogenase
Complexed With SubstrateLIGAND.
pdb|1RX0|C Chain C, Crystal Structure Of Isobutyryl-Coa Dehydrogenase
Complexed With SubstrateLIGAND.
pdb|1RX0|D Chain D, Crystal Structure Of Isobutyryl-Coa Dehydrogenase
Complexed With SubstrateLIGAND
Length = 393
Score = 216 bits (550), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 128/386 (33%), Positives = 205/386 (53%), Gaps = 7/386 (1%)
Query: 6 DTIYDLTEEQNKLRETVASYCKTHITPIAADIDSTNDFKDLRKVWKDFGQLGLLGITVPE 65
D L EEQ + ++ + + P A+ D F V + QLG G+ +
Sbjct: 14 DPSMGLNEEQKEFQKVAFDFAAREMAPNMAEWDQKELFP--VDVMRKAAQLGFGGVYIQT 71
Query: 66 EFGGSEMGYLDHVIAMEELSRSSASVGLSFVAHSNLCVNQINRHATKQQKEKYLPALCSG 125
+ GGS + LD + E L+ S ++++ N+C I+ ++Q+ K+ P LC+
Sbjct: 72 DVGGSGLSRLDTSVIFEALATGCTST-TAYISIHNMCAWMIDSFGNEEQRHKFCPPLCTM 130
Query: 126 EKIGCLAMSEPGSGSDVISMSLKAEKKGDMYVLNGNKFWITNGPDADIAVVYARTNPNAD 185
EK ++EPGSGSD S+ A+K+GD Y+LNG+K +I+ ++DI VV RT
Sbjct: 131 EKFASYCLTEPGSGSDAASLLTSAKKQGDHYILNGSKAFISGAGESDIYVVMCRTGGPGP 190
Query: 186 KKQHGISTFIVEKGTPGFSKGKKLNKLGMRGSNTGELIFENCQVPAENLLGGENKGAYVL 245
K GIS +VEKGTPG S GKK K+G T +IFE+C VP N +G E +G +
Sbjct: 191 K---GISCIVVEKGTPGLSFGKKEKKVGWNSQPTRAVIFEDCAVPVANRIGSEGQGFLIA 247
Query: 246 MSGLDLERLVISAGPVGIMQACCDFAFNYVHERVQFGTRIGEFQLMQGKIADMHVALSAS 305
+ GL+ R+ I++ +G A ++++ R QFG + Q +Q +ADM L A+
Sbjct: 248 VRGLNGGRINIASCSLGAAHASVILTRDHLNVRKQFGEPLASNQYLQFTLADMATRLVAA 307
Query: 306 RAYLYSVAKACDRGSINSKE-CAGVFLVAAENAVKVALEAIQCLGGNGYINDYPTGRYLR 364
R + + A A ++ C+ L A + + +A+Q GG GY+ DY +Y+R
Sbjct: 308 RLMVRNAAVALQEERKDAVALCSMAKLFATDECFAICNQALQMHGGYGYLKDYAVQQYVR 367
Query: 365 DAKLYEIGAGTSEVRRIVIGRSINAE 390
D+++++I G++EV RI+I RS+ E
Sbjct: 368 DSRVHQILEGSNEVMRILISRSLLQE 393
>pdb|3NF4|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Flavin Adenine
Dinucleotide
pdb|3NF4|B Chain B, Crystal Structure Of Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Flavin Adenine
Dinucleotide
Length = 387
Score = 203 bits (517), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 121/340 (35%), Positives = 193/340 (56%), Gaps = 5/340 (1%)
Query: 49 VWKDFGQLGLLGITVPEEFGGSEMGYLDHVIAMEELSRSSASVGLSFVAHSNLCVNQINR 108
V++ G GLL + PEE+GG Y ++ +EE++ ASV ++ HS L + +
Sbjct: 52 VFEQLGAAGLLSLPQPEEWGGGGQPYEVYLQVLEEIAARWASVAVAVSVHS-LSSHPLLV 110
Query: 109 HATKQQKEKYLPALCSGEKIGCLAMSEPGSGSDVISMSLKAEKKGDMYVLNGNKFWITNG 168
T++QK+++LP + SGE+IG ++SEP +GSD ++ A YV+NG+K WIT+G
Sbjct: 111 FGTEEQKKRWLPGMLSGEQIGAYSLSEPQAGSDAAALRCAATPTDGGYVINGSKSWITHG 170
Query: 169 PDADIAVVYARTNPNADKKQHGISTFIVEKGTPGFSKGKKLNKLGMRGSNTGELIFENCQ 228
AD ++ART + G+S F+V PG S GK K+G+ T ++N +
Sbjct: 171 GKADFYTLFARTGEGS----RGVSCFLVPADQPGLSFGKPEEKMGLHAVPTTSAFYDNAR 226
Query: 229 VPAENLLGGENKGAYVLMSGLDLERLVISAGPVGIMQACCDFAFNYVHERVQFGTRIGEF 288
+ A+ +G E +G + S LD RL I+A G+ QA D A Y +ER FG +I +
Sbjct: 227 IDADRRIGEEGQGLQIAFSALDSGRLGIAAVATGLAQAALDEAVAYANERTAFGRKIIDH 286
Query: 289 QLMQGKIADMHVALSASRAYLYSVAKACDRGSINSKECAGVFLVAAENAVKVALEAIQCL 348
Q + +ADM A++ +RA A+ D+G S++ + L A + A+KV +A+Q
Sbjct: 287 QGLGFLLADMAAAVATARATYLDAARRRDQGRPYSQQASIAKLTATDAAMKVTTDAVQVF 346
Query: 349 GGNGYINDYPTGRYLRDAKLYEIGAGTSEVRRIVIGRSIN 388
GG GY DY RY+R+AK+ +I GT++++R+VI R +
Sbjct: 347 GGVGYTRDYRVERYMREAKIMQIFEGTNQIQRLVIARGLT 386
>pdb|2Z1Q|A Chain A, Crystal Structure Of Acyl Coa Dehydrogenase
pdb|2Z1Q|B Chain B, Crystal Structure Of Acyl Coa Dehydrogenase
Length = 577
Score = 203 bits (516), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 124/393 (31%), Positives = 206/393 (52%), Gaps = 24/393 (6%)
Query: 7 TIYDLTEEQNKLRETVASYCKTHITPIAADIDSTNDFKDLRKVWKDFGQLGLLGITVPEE 66
T D E ++ T ++ + + P+ ++ + + + + G+LGLL I VPEE
Sbjct: 24 TPEDFDESVKEIARTTRTFVEREVLPLLERMEH-GELELNVPLMRKAGELGLLAIDVPEE 82
Query: 67 FGGSEMGYLDHVIAMEELSRSSASVGLSFVAHSNLCVNQINRHATKQQKEKYLPALCSGE 126
+GG ++ + + EELS S +++ AH+++ + T++QK KYLP L SGE
Sbjct: 83 YGGLDLPKVISTVVAEELS-GSGGFSVTYGAHTSIGTLPLVYFGTEEQKRKYLPKLASGE 141
Query: 127 KIGCLAMSEPGSGSDVISMSLKA--EKKGDMYVLNGNKFWITNGPDADIAVVYARTNPNA 184
I ++EPGSGSD ++ +A + G Y+LNG K WI+N A + V+A+ +
Sbjct: 142 WIAAYCLTEPGSGSDALAAKTRATLSEDGKHYILNGVKQWISNAGFAHLFTVFAKVD--- 198
Query: 185 DKKQHGISTFIVEKGTPGFSKGKKLNKLGMRGSNTGELIFENCQVPAENLLGGENKGAYV 244
+H + F+VE+ TPG S G + K+G++ S+T ++I E+ +VP EN+LG KG +
Sbjct: 199 --GEH-FTAFLVERDTPGLSFGPEEKKMGIKASSTRQVILEDVKVPVENVLGEIGKGHKI 255
Query: 245 LMSGLDLERLVISAGPVGIMQACCDFAFNYVHERVQFGTRIGEFQLMQGKIADMHVALSA 304
+ L++ R + AG VG + + + Y +RVQFG IG F L+Q K+ +M + A
Sbjct: 256 AFNVLNVGRYKLGAGAVGGAKRALELSAQYATQRVQFGRPIGRFGLIQQKLGEMASRIYA 315
Query: 305 SRAYLYSVAKACDRGSINSKECAGVFLVAAENAVKVAL--------------EAIQCLGG 350
+ + +Y D + K V E AV+ ++ E +Q GG
Sbjct: 316 AESAVYRTVGLIDEALLGKKGPEAVMAGIEEYAVEASIIKVLGSEVLDYVVDEGVQIHGG 375
Query: 351 NGYINDYPTGRYLRDAKLYEIGAGTSEVRRIVI 383
GY +YP R RDA++ I GT+E+ R++I
Sbjct: 376 YGYSQEYPIERAYRDARINRIFEGTNEINRLLI 408
>pdb|2UXW|A Chain A, Crystal Structure Of Human Very Long Chain Acyl-coa
Dehydrogenase (acadvl)
Length = 607
Score = 202 bits (513), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 127/384 (33%), Positives = 197/384 (51%), Gaps = 23/384 (5%)
Query: 18 LRETVASYCKTHITPIAADIDSTNDFKD---LRKV----WKDFGQLGLLGITVPEEFGG- 69
L E + K + P++ + ND L V W+ +LG G+ VP E GG
Sbjct: 46 LNEEQTQFLKELVEPVSRFFEEVNDPAKNDALEMVEETTWQGLKELGAFGLQVPSELGGV 105
Query: 70 ----SEMGYLDHVIAMEELSRSSASVGLSFVAHSNLCVNQINRHATKQQKEKYLPALCSG 125
++ L ++ M +L VG++ AH ++ I TK QKEKYLP L SG
Sbjct: 106 GLCNTQYARLVEIVGMHDLG-----VGITLGAHQSIGFKGILLFGTKAQKEKYLPKLASG 160
Query: 126 EKIGCLAMSEPGSGSDVISMSLKAEKK--GDMYVLNGNKFWITNGPDADIAVVYART--- 180
E + ++EP SGSD S+ A G Y LNG+K WI+NG ADI V+A+T
Sbjct: 161 ETVAAFCLTEPSSGSDAASIRTSAVPSPCGKYYTLNGSKLWISNGGLADIFTVFAKTPVT 220
Query: 181 NPNADKKQHGISTFIVEKGTPGFSKGKKLNKLGMRGSNTGELIFENCQVPAENLLGGENK 240
+P + I+ F+VE+G G + G K+G++ SNT E+ F+ +VP+EN+LG
Sbjct: 221 DPATGAVKEKITAFVVERGFGGITHGPPEKKMGIKASNTAEVFFDGVRVPSENVLGEVGS 280
Query: 241 GAYVLMSGLDLERLVISAGPVGIMQACCDFAFNYVHERVQFGTRIGEFQLMQGKIADMHV 300
G V M L+ R ++A G M+ A ++ R QFG +I F L+Q K+A M +
Sbjct: 281 GFKVAMHILNNGRFGMAAALAGTMRGIIAKAVDHATNRTQFGEKIHNFGLIQEKLARMVM 340
Query: 301 ALSASRAYLYSVAKACDRGSINSK-ECAGVFLVAAENAVKVALEAIQCLGGNGYINDYPT 359
+ + Y V+ D+G+ + + E A + +E A KV E IQ +GG G++ +
Sbjct: 341 LQYVTESMAYMVSANMDQGATDFQIEAAISKIFGSEAAWKVTDECIQIMGGMGFMKEPGV 400
Query: 360 GRYLRDAKLYEIGAGTSEVRRIVI 383
R LRD +++ I GT+++ R+ +
Sbjct: 401 ERVLRDLRIFRIFEGTNDILRLFV 424
>pdb|3B96|A Chain A, Structural Basis For Substrate Fatty-Acyl Chain
Specificity: Crystal Structure Of Human Very-Long-Chain
Acyl-Coa Dehydrogenase
Length = 587
Score = 202 bits (513), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 127/384 (33%), Positives = 197/384 (51%), Gaps = 23/384 (5%)
Query: 18 LRETVASYCKTHITPIAADIDSTNDFKD---LRKV----WKDFGQLGLLGITVPEEFGG- 69
L E + K + P++ + ND L V W+ +LG G+ VP E GG
Sbjct: 26 LNEEQTQFLKELVEPVSRFFEEVNDPAKNDALEMVEETTWQGLKELGAFGLQVPSELGGV 85
Query: 70 ----SEMGYLDHVIAMEELSRSSASVGLSFVAHSNLCVNQINRHATKQQKEKYLPALCSG 125
++ L ++ M +L VG++ AH ++ I TK QKEKYLP L SG
Sbjct: 86 GLCNTQYARLVEIVGMHDLG-----VGITLGAHQSIGFKGILLFGTKAQKEKYLPKLASG 140
Query: 126 EKIGCLAMSEPGSGSDVISMSLKAEKK--GDMYVLNGNKFWITNGPDADIAVVYART--- 180
E + ++EP SGSD S+ A G Y LNG+K WI+NG ADI V+A+T
Sbjct: 141 ETVAAFCLTEPSSGSDAASIRTSAVPSPCGKYYTLNGSKLWISNGGLADIFTVFAKTPVT 200
Query: 181 NPNADKKQHGISTFIVEKGTPGFSKGKKLNKLGMRGSNTGELIFENCQVPAENLLGGENK 240
+P + I+ F+VE+G G + G K+G++ SNT E+ F+ +VP+EN+LG
Sbjct: 201 DPATGAVKEKITAFVVERGFGGITHGPPEKKMGIKASNTAEVFFDGVRVPSENVLGEVGS 260
Query: 241 GAYVLMSGLDLERLVISAGPVGIMQACCDFAFNYVHERVQFGTRIGEFQLMQGKIADMHV 300
G V M L+ R ++A G M+ A ++ R QFG +I F L+Q K+A M +
Sbjct: 261 GFKVAMHILNNGRFGMAAALAGTMRGIIAKAVDHATNRTQFGEKIHNFGLIQEKLARMVM 320
Query: 301 ALSASRAYLYSVAKACDRGSINSK-ECAGVFLVAAENAVKVALEAIQCLGGNGYINDYPT 359
+ + Y V+ D+G+ + + E A + +E A KV E IQ +GG G++ +
Sbjct: 321 LQYVTESMAYMVSANMDQGATDFQIEAAISKIFGSEAAWKVTDECIQIMGGMGFMKEPGV 380
Query: 360 GRYLRDAKLYEIGAGTSEVRRIVI 383
R LRD +++ I GT+++ R+ +
Sbjct: 381 ERVLRDLRIFRIFEGTNDILRLFV 404
>pdb|3GQT|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment
(1,4-Dimethyl-1,2,3,4-
Tetrahydroquinoxalin-6-Yl)methylamine
pdb|3GQT|B Chain B, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment
(1,4-Dimethyl-1,2,3,4-
Tetrahydroquinoxalin-6-Yl)methylamine
pdb|3GQT|C Chain C, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment
(1,4-Dimethyl-1,2,3,4-
Tetrahydroquinoxalin-6-Yl)methylamine
pdb|3GQT|D Chain D, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment
(1,4-Dimethyl-1,2,3,4-
Tetrahydroquinoxalin-6-Yl)methylamine
pdb|3GNC|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment 6421
pdb|3GNC|B Chain B, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment 6421
pdb|3GNC|C Chain C, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment 6421
pdb|3GNC|D Chain D, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment 6421
Length = 399
Score = 193 bits (490), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 119/391 (30%), Positives = 202/391 (51%), Gaps = 13/391 (3%)
Query: 1 TYKIDDTIY---DLTEEQNKLRETVASYCKTHITPIAADI--DSTNDFKDLRKVWKDFGQ 55
T+ DD + L +++ +R+ +Y + + P + T D ++++ G+
Sbjct: 9 TFHWDDPLLLDQQLADDERMVRDAAHAYAQGKLAPRVTEAFRHETTD----AAIFREMGE 64
Query: 56 LGLLGITVPEEFGGSEMGYLDHVIAMEELSRSSASVGLSFVAHSNLCVNQINRHATKQQK 115
+GLLG T+PE++GG + Y+ + + E+ R + S+L + I + QK
Sbjct: 65 IGLLGPTIPEQYGGPGLDYVSYGLIAREVERVDSGYRSMMSVQSSLVMVPIFEFGSDAQK 124
Query: 116 EKYLPALCSGEKIGCLAMSEPGSGSDVISMSLKAEKKGDMYVLNGNKFWITNGPDADIAV 175
EKYLP L +GE IGC ++EP GSD SM +A K Y L+G+K WITN P AD+ V
Sbjct: 125 EKYLPKLATGEWIGCFGLTEPNHGSDPGSMVTRARKVPGGYSLSGSKMWITNSPIADVFV 184
Query: 176 VYARTNPNADKKQHGISTFIVEKGTPGFSKGKKLNKLGMRGSNTGELIFENCQVPAENLL 235
V+A+ + + + G FI+EKG G S K+G+R S TGE++ + VP EN+L
Sbjct: 185 VWAKLDEDGRDEIRG---FILEKGCKGLSAPAIHGKVGLRASITGEIVLDEAFVPEENIL 241
Query: 236 GGENKGAYVLMSGLDLERLVISAGPVGIMQACCDFAFNYVHERVQFGTRIGEFQLMQGKI 295
KG + L+ R I+ G +G ++C A YV +R QFG + QL+Q K+
Sbjct: 242 -PHVKGLRGPFTCLNSARYGIAWGALGAAESCWHIARQYVLDRKQFGRPLAANQLIQKKL 300
Query: 296 ADMHVALSASRAYLYSVAKACDRGSINSKECAGVFLVAAENAVKVALEAIQCLGGNGYIN 355
ADM ++ + + + D G+ + + + + A+ +A A LGGNG +
Sbjct: 301 ADMQTEITLGLQGVLRLGRMKDEGTAAVEITSIMKRNSCGKALDIARLARDMLGGNGISD 360
Query: 356 DYPTGRYLRDAKLYEIGAGTSEVRRIVIGRS 386
++ R+L + ++ GT ++ +++GR+
Sbjct: 361 EFGVARHLVNLEVVNTYEGTHDIHALILGRA 391
>pdb|3EOM|A Chain A, 2.4 A Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei
pdb|3EOM|B Chain B, 2.4 A Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei
pdb|3EOM|C Chain C, 2.4 A Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei
pdb|3EOM|D Chain D, 2.4 A Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei
pdb|3EON|A Chain A, 2.55a Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei In Complex
With A Small Molecule
pdb|3EON|B Chain B, 2.55a Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei In Complex
With A Small Molecule
pdb|3EON|C Chain C, 2.55a Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei In Complex
With A Small Molecule
pdb|3EON|D Chain D, 2.55a Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei In Complex
With A Small Molecule
pdb|3II9|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei At 1.73 Angstrom
pdb|3II9|B Chain B, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei At 1.73 Angstrom
pdb|3II9|C Chain C, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei At 1.73 Angstrom
pdb|3II9|D Chain D, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei At 1.73 Angstrom
Length = 396
Score = 193 bits (490), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 119/391 (30%), Positives = 202/391 (51%), Gaps = 13/391 (3%)
Query: 1 TYKIDDTIY---DLTEEQNKLRETVASYCKTHITPIAADI--DSTNDFKDLRKVWKDFGQ 55
T+ DD + L +++ +R+ +Y + + P + T D ++++ G+
Sbjct: 6 TFHWDDPLLLDQQLADDERMVRDAAHAYAQGKLAPRVTEAFRHETTD----AAIFREMGE 61
Query: 56 LGLLGITVPEEFGGSEMGYLDHVIAMEELSRSSASVGLSFVAHSNLCVNQINRHATKQQK 115
+GLLG T+PE++GG + Y+ + + E+ R + S+L + I + QK
Sbjct: 62 IGLLGPTIPEQYGGPGLDYVSYGLIAREVERVDSGYRSMMSVQSSLVMVPIFEFGSDAQK 121
Query: 116 EKYLPALCSGEKIGCLAMSEPGSGSDVISMSLKAEKKGDMYVLNGNKFWITNGPDADIAV 175
EKYLP L +GE IGC ++EP GSD SM +A K Y L+G+K WITN P AD+ V
Sbjct: 122 EKYLPKLATGEWIGCFGLTEPNHGSDPGSMVTRARKVPGGYSLSGSKMWITNSPIADVFV 181
Query: 176 VYARTNPNADKKQHGISTFIVEKGTPGFSKGKKLNKLGMRGSNTGELIFENCQVPAENLL 235
V+A+ + + + G FI+EKG G S K+G+R S TGE++ + VP EN+L
Sbjct: 182 VWAKLDEDGRDEIRG---FILEKGCKGLSAPAIHGKVGLRASITGEIVLDEAFVPEENIL 238
Query: 236 GGENKGAYVLMSGLDLERLVISAGPVGIMQACCDFAFNYVHERVQFGTRIGEFQLMQGKI 295
KG + L+ R I+ G +G ++C A YV +R QFG + QL+Q K+
Sbjct: 239 -PHVKGLRGPFTCLNSARYGIAWGALGAAESCWHIARQYVLDRKQFGRPLAANQLIQKKL 297
Query: 296 ADMHVALSASRAYLYSVAKACDRGSINSKECAGVFLVAAENAVKVALEAIQCLGGNGYIN 355
ADM ++ + + + D G+ + + + + A+ +A A LGGNG +
Sbjct: 298 ADMQTEITLGLQGVLRLGRMKDEGTAAVEITSIMKRNSCGKALDIARLARDMLGGNGISD 357
Query: 356 DYPTGRYLRDAKLYEIGAGTSEVRRIVIGRS 386
++ R+L + ++ GT ++ +++GR+
Sbjct: 358 EFGVARHLVNLEVVNTYEGTHDIHALILGRA 388
>pdb|3D6B|A Chain A, 2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei
pdb|3D6B|B Chain B, 2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei
pdb|3D6B|C Chain C, 2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei
pdb|3D6B|D Chain D, 2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei
Length = 395
Score = 193 bits (490), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 119/391 (30%), Positives = 202/391 (51%), Gaps = 13/391 (3%)
Query: 1 TYKIDDTIY---DLTEEQNKLRETVASYCKTHITPIAADI--DSTNDFKDLRKVWKDFGQ 55
T+ DD + L +++ +R+ +Y + + P + T D ++++ G+
Sbjct: 5 TFHWDDPLLLDQQLADDERMVRDAAHAYAQGKLAPRVTEAFRHETTD----AAIFREMGE 60
Query: 56 LGLLGITVPEEFGGSEMGYLDHVIAMEELSRSSASVGLSFVAHSNLCVNQINRHATKQQK 115
+GLLG T+PE++GG + Y+ + + E+ R + S+L + I + QK
Sbjct: 61 IGLLGPTIPEQYGGPGLDYVSYGLIAREVERVDSGYRSMMSVQSSLVMVPIFEFGSDAQK 120
Query: 116 EKYLPALCSGEKIGCLAMSEPGSGSDVISMSLKAEKKGDMYVLNGNKFWITNGPDADIAV 175
EKYLP L +GE IGC ++EP GSD SM +A K Y L+G+K WITN P AD+ V
Sbjct: 121 EKYLPKLATGEWIGCFGLTEPNHGSDPGSMVTRARKVPGGYSLSGSKMWITNSPIADVFV 180
Query: 176 VYARTNPNADKKQHGISTFIVEKGTPGFSKGKKLNKLGMRGSNTGELIFENCQVPAENLL 235
V+A+ + + + G FI+EKG G S K+G+R S TGE++ + VP EN+L
Sbjct: 181 VWAKLDEDGRDEIRG---FILEKGCKGLSAPAIHGKVGLRASITGEIVLDEAFVPEENIL 237
Query: 236 GGENKGAYVLMSGLDLERLVISAGPVGIMQACCDFAFNYVHERVQFGTRIGEFQLMQGKI 295
KG + L+ R I+ G +G ++C A YV +R QFG + QL+Q K+
Sbjct: 238 -PHVKGLRGPFTCLNSARYGIAWGALGAAESCWHIARQYVLDRKQFGRPLAANQLIQKKL 296
Query: 296 ADMHVALSASRAYLYSVAKACDRGSINSKECAGVFLVAAENAVKVALEAIQCLGGNGYIN 355
ADM ++ + + + D G+ + + + + A+ +A A LGGNG +
Sbjct: 297 ADMQTEITLGLQGVLRLGRMKDEGTAAVEITSIMKRNSCGKALDIARLARDMLGGNGISD 356
Query: 356 DYPTGRYLRDAKLYEIGAGTSEVRRIVIGRS 386
++ R+L + ++ GT ++ +++GR+
Sbjct: 357 EFGVARHLVNLEVVNTYEGTHDIHALILGRA 387
>pdb|3R7K|A Chain A, Crystal Structure Of A Probable Acyl Coa Dehydrogenase
From Mycobacterium Abscessus Atcc 19977 DSM 44196
pdb|3R7K|B Chain B, Crystal Structure Of A Probable Acyl Coa Dehydrogenase
From Mycobacterium Abscessus Atcc 19977 DSM 44196
pdb|3R7K|C Chain C, Crystal Structure Of A Probable Acyl Coa Dehydrogenase
From Mycobacterium Abscessus Atcc 19977 DSM 44196
pdb|3R7K|D Chain D, Crystal Structure Of A Probable Acyl Coa Dehydrogenase
From Mycobacterium Abscessus Atcc 19977 DSM 44196
Length = 403
Score = 182 bits (462), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 116/378 (30%), Positives = 190/378 (50%), Gaps = 8/378 (2%)
Query: 12 TEEQNKLRETVASYCKTHITPIAADIDSTNDFKDLRKVWKDFGQLGLLGITVPEEFGGSE 71
T E+ L + S+ + I P A+ + + R + + ++GLLGI PEE GGS
Sbjct: 30 TPERRALSQMARSFVEREIAPKLAEWEHVGEIP--RDLHLNAAEVGLLGIGFPEEVGGSG 87
Query: 72 MGYLDHVIAMEELSRSSASVGL--SFVAHSNLCVNQINRHATKQQKEKYLPALCSGEKIG 129
+D + E + + S G+ + H + + I + + E+Y+ +G+ IG
Sbjct: 88 GNAIDSALVTEAILAAGGSTGVCAALFTH-GIALPHIAANGSDALIERYVRPTLAGKMIG 146
Query: 130 CLAMSEPGSGSDVISMSLKAEKKGDMYVLNGNKFWITNGPDADIAVVYARTNPNADKKQH 189
L ++EPG+GSDV ++ +A ++GD YV+NG K +IT+G AD RT
Sbjct: 147 SLGVTEPGAGSDVANLRTRAVREGDTYVVNGAKTFITSGVRADFVTTAVRTG---GPGYG 203
Query: 190 GISTFIVEKGTPGFSKGKKLNKLGMRGSNTGELIFENCQVPAENLLGGENKGAYVLMSGL 249
G+S +++K +PGF ++L+K+G R S+T EL F + +VPA+NL+G EN G +M
Sbjct: 204 GVSLLVIDKNSPGFEVSRRLDKMGWRCSDTAELSFVDVRVPADNLVGAENSGFLQIMQQF 263
Query: 250 DLERLVISAGPVGIMQACCDFAFNYVHERVQFGTRIGEFQLMQGKIADMHVALSASRAYL 309
ERL I+ D A ++ ER FG + Q+++ K+A+M + + Y
Sbjct: 264 QAERLGIAVQAYATAGRALDLAKSWARERETFGRPLTGRQIIRHKLAEMARQVDVACTYT 323
Query: 310 YSVAKACDRGSINSKECAGVFLVAAENAVKVALEAIQCLGGNGYINDYPTGRYLRDAKLY 369
+V + G E + A V EA+Q GG GY+ + R+ RD ++
Sbjct: 324 RAVMQRWLAGEDVVAEVSMAKNTAVYACDYVVNEAVQIFGGMGYMRESEIERHYRDCRIL 383
Query: 370 EIGAGTSEVRRIVIGRSI 387
IG GT+E+ VI + I
Sbjct: 384 GIGGGTNEIMNEVIAKRI 401
>pdb|3OWA|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase Complexed With
Fad From Bacillus Anthracis
pdb|3OWA|B Chain B, Crystal Structure Of Acyl-Coa Dehydrogenase Complexed With
Fad From Bacillus Anthracis
pdb|3OWA|C Chain C, Crystal Structure Of Acyl-Coa Dehydrogenase Complexed With
Fad From Bacillus Anthracis
pdb|3OWA|D Chain D, Crystal Structure Of Acyl-Coa Dehydrogenase Complexed With
Fad From Bacillus Anthracis
Length = 597
Score = 182 bits (461), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 126/398 (31%), Positives = 199/398 (50%), Gaps = 29/398 (7%)
Query: 7 TIYDLTEEQNKLRETVASYCKTHITPIAADIDSTNDFKDLRKVWKDFGQLGLLGITVPEE 66
T D + E + +T + + P ++ ++F ++ K+ G+LGLLG VPEE
Sbjct: 29 TPEDFSSEHKXIAKTTEDFIVNEVLPELEYLEQ-HEFDRSVRLLKEAGELGLLGADVPEE 87
Query: 67 FGGSEMGYLDHVIAMEELSRSSASVGLSFVAHSNLCVNQINRHATKQQKEKYLPALCSGE 126
+GG + + + E+ SR+ ++ AH + I ++QK+KYLP L +GE
Sbjct: 88 YGGIGLDKVSSALIAEKFSRAGG-FAITHGAHVGIGSLPIVLFGNEEQKKKYLPLLATGE 146
Query: 127 KIGCLAMSEPGSGSDVISMSLKAE--KKGDMYVLNGNKFWITNGPDADIAVVYARTNPNA 184
K+ A++EPGSGSD + A +G YVLNG K WITN AD+ +VYA+ +
Sbjct: 147 KLAAYALTEPGSGSDALGAKTTARLNAEGTHYVLNGEKQWITNSAFADVFIVYAKID--- 203
Query: 185 DKKQHGISTFIVEKGTPGFSKGKKLNKLGMRGSNTGELIFENCQVPAENLLGGENKGAYV 244
+H S FIVEK G S + K G++ S+T LI E+ VP ENLLG KG +
Sbjct: 204 --GEH-FSAFIVEKDYAGVSTSPEEKKXGIKCSSTRTLILEDALVPKENLLGEIGKGHII 260
Query: 245 LMSGLDLERLVISAGPVGIMQACCDFAFNYVHERVQFGTRIGEFQLMQGKIADMHVALSA 304
+ L++ R + G VG + + + Y ++R QF I F L+Q K+A+ A
Sbjct: 261 AFNILNIGRYKLGVGTVGSAKRAVEISAQYANQRQQFKQPIARFPLIQEKLANXAAKTYA 320
Query: 305 SRAYLY-SVAKACDRGSINS----KECAGVFLVAAENAVKVAL--------------EAI 345
+ + +Y +V R S S K+ V AE A++ +L E +
Sbjct: 321 AESSVYRTVGLFESRXSTLSEEEVKDGKAVAASIAEYAIECSLNKVFGSEVLDYTVDEGV 380
Query: 346 QCLGGNGYINDYPTGRYLRDAKLYEIGAGTSEVRRIVI 383
Q GG G+ +Y R RD+++ I GT+E+ R+++
Sbjct: 381 QIHGGYGFXAEYEIERXYRDSRINRIFEGTNEINRLIV 418
>pdb|3SF6|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Mycobacterium Smegmatis
Length = 403
Score = 180 bits (456), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 115/379 (30%), Positives = 193/379 (50%), Gaps = 12/379 (3%)
Query: 11 LTEEQNKLRETVASYCKTHITPIAADIDSTNDFKDLRKVWKDFGQLGLLGITVPEEFGGS 70
L+ E+ ++R+TV S + I P A + R++ + G+LGLLG+ + + +G +
Sbjct: 30 LSAEEREIRDTVRSVVQRRIKPHIASWYEDGELP-ARELAVELGELGLLGMHL-KGYGCA 87
Query: 71 EMGYLDHVIAMEELSRSSASVGLSFVAHSNLCVNQINRHATKQQKEKYLPALCSGEKIGC 130
M + + +A EL + + +L + I+ + +QK+++LP + SG +IGC
Sbjct: 88 GMSAVAYGLACLELEAGDSGIRSLVSVQGSLAMYAIHAFGSDEQKDQWLPDMASGHRIGC 147
Query: 131 LAMSEPGSGSDVISMSLKAEKKGDMYVLNGNKFWITNGPDADIAVVYARTNPNADKKQHG 190
++EP GSD M +A + GD ++L G K WITNG AD+AVV+ART+ G
Sbjct: 148 FGLTEPDHGSDPAGMRTRATRSGDDWILTGTKMWITNGSVADVAVVWARTD-------EG 200
Query: 191 ISTFIVEKGTPGFSKGKKLNKLGMRGSNTGELIFENCQVP-AENLLGGENKGAYVLMSGL 249
I F+V TPGF+ +K+ +R S T EL+ + ++P + L G + GA + L
Sbjct: 201 IRGFVVPTDTPGFTANTIKSKMSLRASVTSELVLDGVRLPDSARLPGATSLGAP--LRCL 258
Query: 250 DLERLVISAGPVGIMQACCDFAFNYVHERVQFGTRIGEFQLMQGKIADMHVALSASRAYL 309
+ R I G +G + C + A Y R QF IG FQL Q K+ADM +
Sbjct: 259 NEARFGIVFGALGAARDCLETALAYACSREQFDRPIGGFQLTQQKLADMTLEYGKGFLLA 318
Query: 310 YSVAKACDRGSINSKECAGVFLVAAENAVKVALEAIQCLGGNGYINDYPTGRYLRDAKLY 369
+ + D G + ++ + L A+++A A LG +G +YP R+ + +
Sbjct: 319 LHLGRQKDAGELAPEQVSLGKLNNVREAIEIARTARTVLGASGITGEYPVMRHANNLESV 378
Query: 370 EIGAGTSEVRRIVIGRSIN 388
GTSE+ ++IG+++
Sbjct: 379 LTYEGTSEMHTLIIGQALT 397
>pdb|3OIB|A Chain A, Crystal Structure Of A Putative Acyl-Coa Dehydrogenase
From Mycobacterium Smegmatis, Iodide Soak
pdb|3OIB|B Chain B, Crystal Structure Of A Putative Acyl-Coa Dehydrogenase
From Mycobacterium Smegmatis, Iodide Soak
pdb|3P4T|A Chain A, Crystal Structure Of A Putative Acyl-Coa Dehydrogenase
From Mycobacterium Smegmatis
pdb|3P4T|B Chain B, Crystal Structure Of A Putative Acyl-Coa Dehydrogenase
From Mycobacterium Smegmatis
Length = 403
Score = 175 bits (444), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 121/370 (32%), Positives = 187/370 (50%), Gaps = 9/370 (2%)
Query: 12 TEEQNKLRETVASYCKTHITPIAADIDSTNDFKDLRKVWKDFGQLGLLGITVPEEFGGSE 71
T E+ LR+TV ++ + + P A + + + R++ + +LGLLG PE+ GGS
Sbjct: 27 TAEREALRKTVRAFAEREVLPHAHEWERAGEIP--RELHRKAAELGLLGAGFPEDAGGSG 84
Query: 72 MGYLDHVIAMEELSRSSASVGL-SFVAHSNLCVNQINRHATKQQKEKYLPALCSGEKIGC 130
D V+ EE+ + + G+ + + + V + ++ + Y+ GEKIG
Sbjct: 85 GDGADPVVICEEMHYAGSPGGVYASLFTCGIAVPHMIASGDQRLIDTYVRPTLRGEKIGA 144
Query: 131 LAMSEPGSGSDVISMSLKAEKKGDMYVLNGNKFWITNGPDADIAVVYARTN-PNADKKQH 189
LA++EPG GSDV + +A+ GD YV+NG K +IT+G AD V ART P A
Sbjct: 145 LAITEPGGGSDVGHLRTRADLDGDHYVINGAKTYITSGVRADYVVTAARTGGPGAG---- 200
Query: 190 GISTFIVEKGTPGFSKGKKLNKLGMRGSNTGELIFENCQVPAENLLGGENKGAYVLMSGL 249
G+S +V+KGTPGF +KL+K+G R S+T EL + + +VP NL+G EN G + +
Sbjct: 201 GVSLIVVDKGTPGFEVTRKLDKMGWRSSDTAELSYTDVRVPVANLVGSENTGFAQIAAAF 260
Query: 250 DLERLVISAGPVGIMQACCDFAFNYVHERVQFGTRIGEFQLMQGKIADMHVALSASRAYL 309
ER+ ++ Q C D + R FG + Q +Q +A M + +R Y
Sbjct: 261 VAERVGLATQAYAGAQRCLDLTVEWCRNRDTFGRPLISRQAVQNTLAGMARRIDVARVYT 320
Query: 310 YSVAKACDRGSIN-SKECAGVFLVAAENAVKVALEAIQCLGGNGYINDYPTGRYLRDAKL 368
V + G N E A E VA +A+Q GG GY+ + R RD ++
Sbjct: 321 RHVVERQLAGETNLIAEVCFAKNTAVEAGEWVANQAVQLFGGMGYMAESEVERQYRDMRI 380
Query: 369 YEIGAGTSEV 378
IG GT+E+
Sbjct: 381 LGIGGGTTEI 390
>pdb|1SIQ|A Chain A, The Crystal Structure And Mechanism Of Human Glutaryl-Coa
Dehydrogenase
Length = 392
Score = 170 bits (430), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 112/382 (29%), Positives = 191/382 (50%), Gaps = 16/382 (4%)
Query: 11 LTEEQNKLRETVASYCKTHITPIAADIDSTNDFKDLRKVWKDFGQLGLLGITVPEEFGGS 70
LT ++ +R+T +YC+ + P + F R++ + G+LG+LG T+ + +G +
Sbjct: 14 LTTDEILIRDTFRTYCQERLMPRILLANRNEVFH--REIISEMGELGVLGPTI-KGYGCA 70
Query: 71 EMGYLDHVIAMEELSRSSASVGLSFVAHSNLCVNQINRHATKQQKEKYLPALCSGEKIGC 130
+ + + + EL R + + S+L ++ I + +++Q++KYLP L GE +GC
Sbjct: 71 GVSSVAYGLLARELERVDSGYRSAMSVQSSLVMHPIYAYGSEEQRQKYLPQLAKGELLGC 130
Query: 131 LAMSEPGSGSDVISMSLKAE--KKGDMYVLNGNKFWITNGPDADIAVVYARTNPNADKKQ 188
++EP SGSD SM +A Y LNG K WITN P AD+ VV+AR
Sbjct: 131 FGLTEPNSGSDPSSMETRAHYNSSNKSYTLNGTKTWITNSPMADLFVVWARCEDGC---- 186
Query: 189 HGISTFIVEKGTPGFSKGKKLNKLGMRGSNTGELIFENCQVPAENLLGGENK--GAYVLM 246
I F++EKG G S + K +R S TG +I + +VP EN+L G + G +
Sbjct: 187 --IRGFLLEKGMRGLSAPRIQGKFSLRASATGMIIMDGVEVPEENVLPGASSLGGPF--- 241
Query: 247 SGLDLERLVISAGPVGIMQACCDFAFNYVHERVQFGTRIGEFQLMQGKIADMHVALSASR 306
L+ R I+ G +G + C A Y +R+QFG + QL+Q K+ADM ++
Sbjct: 242 GCLNNARYGIAWGVLGASEFCLHTARQYALDRMQFGVPLARNQLIQKKLADMLTEITLGL 301
Query: 307 AYLYSVAKACDRGSINSKECAGVFLVAAENAVKVALEAIQCLGGNGYINDYPTGRYLRDA 366
+ + D+ + + + A+ +A +A LGGNG ++Y R+ +
Sbjct: 302 HACLQLGRLKDQDKAAPEMVSLLKRNNCGKALDIARQARDMLGGNGISDEYHVIRHAMNL 361
Query: 367 KLYEIGAGTSEVRRIVIGRSIN 388
+ GT ++ +++GR+I
Sbjct: 362 EAVNTYEGTHDIHALILGRAIT 383
>pdb|1SIR|A Chain A, The Crystal Structure And Mechanism Of Human Glutaryl-Coa
Dehydrogenase
pdb|2R0N|A Chain A, The Effect Of A Glu370asp Mutation In Glutaryl-Coa
Dehydrogenase On Proton Transfer To The Dienolate
Intermediate
Length = 394
Score = 169 bits (429), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 112/382 (29%), Positives = 191/382 (50%), Gaps = 16/382 (4%)
Query: 11 LTEEQNKLRETVASYCKTHITPIAADIDSTNDFKDLRKVWKDFGQLGLLGITVPEEFGGS 70
LT ++ +R+T +YC+ + P + F R++ + G+LG+LG T+ + +G +
Sbjct: 16 LTTDEILIRDTFRTYCQERLMPRILLANRNEVFH--REIISEMGELGVLGPTI-KGYGCA 72
Query: 71 EMGYLDHVIAMEELSRSSASVGLSFVAHSNLCVNQINRHATKQQKEKYLPALCSGEKIGC 130
+ + + + EL R + + S+L ++ I + +++Q++KYLP L GE +GC
Sbjct: 73 GVSSVAYGLLARELERVDSGYRSAMSVQSSLVMHPIYAYGSEEQRQKYLPQLAKGELLGC 132
Query: 131 LAMSEPGSGSDVISMSLKAE--KKGDMYVLNGNKFWITNGPDADIAVVYARTNPNADKKQ 188
++EP SGSD SM +A Y LNG K WITN P AD+ VV+AR
Sbjct: 133 FGLTEPNSGSDPSSMETRAHYNSSNKSYTLNGTKTWITNSPMADLFVVWARCEDGC---- 188
Query: 189 HGISTFIVEKGTPGFSKGKKLNKLGMRGSNTGELIFENCQVPAENLLGGENK--GAYVLM 246
I F++EKG G S + K +R S TG +I + +VP EN+L G + G +
Sbjct: 189 --IRGFLLEKGMRGLSAPRIQGKFSLRASATGMIIMDGVEVPEENVLPGASSLGGPF--- 243
Query: 247 SGLDLERLVISAGPVGIMQACCDFAFNYVHERVQFGTRIGEFQLMQGKIADMHVALSASR 306
L+ R I+ G +G + C A Y +R+QFG + QL+Q K+ADM ++
Sbjct: 244 GCLNNARYGIAWGVLGASEFCLHTARQYALDRMQFGVPLARNQLIQKKLADMLTEITLGL 303
Query: 307 AYLYSVAKACDRGSINSKECAGVFLVAAENAVKVALEAIQCLGGNGYINDYPTGRYLRDA 366
+ + D+ + + + A+ +A +A LGGNG ++Y R+ +
Sbjct: 304 HACLQLGRLKDQDKAAPEMVSLLKRNNCGKALDIARQARDMLGGNGISDEYHVIRHAMNL 363
Query: 367 KLYEIGAGTSEVRRIVIGRSIN 388
+ GT ++ +++GR+I
Sbjct: 364 EAVNTYEGTHDIHALILGRAIT 385
>pdb|2R0M|A Chain A, The Effect Of A Glu370asp Mutation In Glutaryl-Coa
Dehydrogenase On Proton Transfer To The Dienolate
Intermediate
Length = 394
Score = 169 bits (428), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 112/382 (29%), Positives = 191/382 (50%), Gaps = 16/382 (4%)
Query: 11 LTEEQNKLRETVASYCKTHITPIAADIDSTNDFKDLRKVWKDFGQLGLLGITVPEEFGGS 70
LT ++ +R+T +YC+ + P + F R++ + G+LG+LG T+ + +G +
Sbjct: 16 LTTDEILIRDTFRTYCQERLMPRILLANRNEVFH--REIISEMGELGVLGPTI-KGYGCA 72
Query: 71 EMGYLDHVIAMEELSRSSASVGLSFVAHSNLCVNQINRHATKQQKEKYLPALCSGEKIGC 130
+ + + + EL R + + S+L ++ I + +++Q++KYLP L GE +GC
Sbjct: 73 GVSSVAYGLLARELERVDSGYRSAMSVQSSLVMHPIYAYGSEEQRQKYLPQLAKGELLGC 132
Query: 131 LAMSEPGSGSDVISMSLKAE--KKGDMYVLNGNKFWITNGPDADIAVVYARTNPNADKKQ 188
++EP SGSD SM +A Y LNG K WITN P AD+ VV+AR
Sbjct: 133 FGLTEPNSGSDPSSMETRAHYNSSNKSYTLNGTKTWITNSPMADLFVVWARCEDGC---- 188
Query: 189 HGISTFIVEKGTPGFSKGKKLNKLGMRGSNTGELIFENCQVPAENLLGGENK--GAYVLM 246
I F++EKG G S + K +R S TG +I + +VP EN+L G + G +
Sbjct: 189 --IRGFLLEKGMRGLSAPRIQGKFSLRASATGMIIMDGVEVPEENVLPGASSLGGPF--- 243
Query: 247 SGLDLERLVISAGPVGIMQACCDFAFNYVHERVQFGTRIGEFQLMQGKIADMHVALSASR 306
L+ R I+ G +G + C A Y +R+QFG + QL+Q K+ADM ++
Sbjct: 244 GCLNNARYGIAWGVLGASEFCLHTARQYALDRMQFGVPLARNQLIQKKLADMLTEITLGL 303
Query: 307 AYLYSVAKACDRGSINSKECAGVFLVAAENAVKVALEAIQCLGGNGYINDYPTGRYLRDA 366
+ + D+ + + + A+ +A +A LGGNG ++Y R+ +
Sbjct: 304 HACLQLGRLKDQDKAAPEMVSLLKRNNCGKALDIARQARDMLGGNGISDEYHVIRHAMNL 363
Query: 367 KLYEIGAGTSEVRRIVIGRSIN 388
+ GT ++ +++GR+I
Sbjct: 364 EAVNTYDGTHDIHALILGRAIT 385
>pdb|2EBA|A Chain A, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|C Chain C, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|D Chain D, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|E Chain E, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|F Chain F, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|G Chain G, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|H Chain H, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|I Chain I, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
Length = 385
Score = 160 bits (406), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 113/389 (29%), Positives = 192/389 (49%), Gaps = 15/389 (3%)
Query: 2 YKIDDTIYDLTEEQNKLRETVASYCKTHITPIAADIDSTNDFKDLRKVWKDFGQLGLLGI 61
Y ++D LT E+ ++++ + + P D F + F +LG LG
Sbjct: 5 YALEDL---LTPEEKEVQKAARRFLEKEALPHIRDWWEEGVFPT--HLIPRFAELGFLGP 59
Query: 62 TVPEEFGGSEMGYLDHVIAMEELSRSSASVGLSFVA-HSNLCVNQINRHATKQQKEKYLP 120
T+P E+GG+ + + + EL R + + SFV+ S+L + I + +++QK ++LP
Sbjct: 60 TLPPEYGGAGVSSAAYGLICYELERVDSGL-RSFVSVQSSLVMYPIYAYGSEEQKREFLP 118
Query: 121 ALCSGEKIGCLAMSEPGSGSDVI-SMSLKAEKKGDMYVLNGNKFWITNGPDADIAVVYAR 179
L GE +GC ++EP GSD +M +A ++GD +VLNG K WITNG A +AV++A+
Sbjct: 119 KLARGEMVGCFGLTEPDGGSDPYGNMKTRARREGDTWVLNGTKMWITNGNLAHLAVIWAK 178
Query: 180 TNPNADKKQHGISTFIVEKGTPGFSKGKKLNKLGMRGSNTGELIFENCQVPAENLLGGEN 239
+ F+V TPGF + K+ +R S T EL+ E +VP E+L +
Sbjct: 179 DEGGE------VLGFLVPTDTPGFQAREVKRKMSLRASVTSELVLEEVRVP-ESLRLPKA 231
Query: 240 KGAYVLMSGLDLERLVISAGPVGIMQACCDFAFNYVHERVQFGTRIGEFQLMQGKIADMH 299
G +S L R I+ G +G ++A + A + R FG + + QL+Q K+A+M
Sbjct: 232 LGLKAPLSCLTQARFGIAWGAMGALEAVYEEAVAFAKSRSTFGEPLAKKQLVQAKLAEML 291
Query: 300 VALSASRAYLYSVAKACDRGSINSKECAGVFLVAAENAVKVALEAIQCLGGNGYINDYPT 359
+ + +A+ D G + + + A++ A A LGG+G +Y
Sbjct: 292 AWHTEGLLLAWRLARLKDEGKLTPAQVSLAKRQNVWKALQAARMARDILGGSGITLEYHA 351
Query: 360 GRYLRDAKLYEIGAGTSEVRRIVIGRSIN 388
R++ + + GT +V +V+GR I
Sbjct: 352 IRHMLNLETVYTYEGTHDVHTLVLGREIT 380
>pdb|3SWO|A Chain A, Crystal Structure Of A Glutaryl-Coa Dehydrogenase From
Mycobacterium Smegmatis In Complex With Fadh2
pdb|3SWO|B Chain B, Crystal Structure Of A Glutaryl-Coa Dehydrogenase From
Mycobacterium Smegmatis In Complex With Fadh2
pdb|3SWO|C Chain C, Crystal Structure Of A Glutaryl-Coa Dehydrogenase From
Mycobacterium Smegmatis In Complex With Fadh2
pdb|3SWO|D Chain D, Crystal Structure Of A Glutaryl-Coa Dehydrogenase From
Mycobacterium Smegmatis In Complex With Fadh2
Length = 399
Score = 155 bits (391), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 111/387 (28%), Positives = 190/387 (49%), Gaps = 15/387 (3%)
Query: 6 DTIYDLTEEQNKLRETVASYCKTHITP-IAADIDSTNDFKDLRKVWKDFGQLGLLGITVP 64
DT L +++ + TV + T + P + +S +L K +FG LG+LG+ +
Sbjct: 21 DTDRLLDQDERDIAATVRQFVDTRLKPNVEGWFESATLPSELAK---EFGNLGVLGMHL- 76
Query: 65 EEFGGSEMGYLDHVIAMEELSRSSASVGLSFVA-HSNLCVNQINRHATKQQKEKYLPALC 123
+ +G + + + +A EL + SFV+ +L + I R+ +++QK ++LP L
Sbjct: 77 QGYGCAGTNAVSYGLACMELEAGDSGF-RSFVSVQGSLSMFSIYRYGSEEQKNEWLPRLA 135
Query: 124 SGEKIGCLAMSEPGSGSDVISMSLKAEKKGDMYVLNGNKFWITNGPDADIAVVYARTNPN 183
+G+ IGC ++EP GS+ M +A + G ++LNG K WITNG AD+A V+A+T+
Sbjct: 136 AGDAIGCFGLTEPDFGSNPAGMRTRARRDGSDWILNGTKMWITNGNLADVATVWAQTD-- 193
Query: 184 ADKKQHGISTFIVEKGTPGFSKGKKLNKLGMRGSNTGELIFENCQVPAENLLGGENKGAY 243
GI F+V TPGF+ + KL +R S T EL+ +N ++PA L +G
Sbjct: 194 -----DGIRGFLVPTDTPGFTANEIHRKLSLRASVTSELVLDNVRLPASAQL-PLAEGLS 247
Query: 244 VLMSGLDLERLVISAGPVGIMQACCDFAFNYVHERVQFGTRIGEFQLMQGKIADMHVALS 303
+S L+ R I G +G + + Y R F + +QL Q K+A+M V L
Sbjct: 248 APLSCLNEARFGIVFGALGAARDSLETTIAYTQSREVFDKPLSNYQLTQEKLANMTVELG 307
Query: 304 ASRAYLYSVAKACDRGSINSKECAGVFLVAAENAVKVALEAIQCLGGNGYINDYPTGRYL 363
+ + D + ++ + L A+ +A E LGG+G +Y R+
Sbjct: 308 KGMLLAIHLGRIKDAEGVRPEQISLGKLNNVREAIAIARECRTLLGGSGITLEYSPLRHA 367
Query: 364 RDAKLYEIGAGTSEVRRIVIGRSINAE 390
+ + GTSE+ + IG+++ +
Sbjct: 368 NNLESVLTYEGTSEMHLLSIGKALTGK 394
>pdb|2IX6|A Chain A, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
pdb|2IX6|B Chain B, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
pdb|2IX6|C Chain C, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
pdb|2IX6|D Chain D, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
pdb|2IX6|E Chain E, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
pdb|2IX6|F Chain F, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
Length = 449
Score = 151 bits (382), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 104/378 (27%), Positives = 177/378 (46%), Gaps = 9/378 (2%)
Query: 11 LTEEQNKLRETVASYCKTHITPIAADIDSTNDFKDLRKVWKDFGQLGLLGITVPEEFGGS 70
LT E+ +R+ V + + PI + +F + G +G+ G ++ + +G
Sbjct: 55 LTPEEQAIRKKVRECMEKEVAPIMTEYWEKAEFP--FHITPKLGAMGVAGGSI-KGYGCP 111
Query: 71 EMGYLDHVIAMEELSRSSASVGLSFVAHSNLCVNQINRHATKQQKEKYLPALCSGEKIGC 130
+ + IA E++R AS + HS+L + I ++ QKEKYLP+L + C
Sbjct: 112 GLSITANAIATAEIARVDASCSTFILVHSSLGMLTIALCGSEAQKEKYLPSLAQLNTVAC 171
Query: 131 LAMSEPGSGSDVISMSLKAEKKGDMYVLNGNKFWITNGPDADIAVVYARTNPNADKKQHG 190
A++EP +GSD + A K + +NG K WI N AD+ +++AR + +
Sbjct: 172 WALTEPDNGSDASGLGTTATKVEGGWKINGQKRWIGNSTFADLLIIFAR-----NTTTNQ 226
Query: 191 ISTFIVEKGTPGFSKGKKLNKLGMRGSNTGELIFENCQVPAENLLGGENKGAYVLMSGLD 250
I+ FIV+K PG K NK+G+R G+++ +N VP E+ L G N L
Sbjct: 227 INGFIVKKDAPGLKATKIPNKIGLRMVQNGDILLQNVFVPDEDRLPGVNSFQDT-SKVLA 285
Query: 251 LERLVISAGPVGIMQACCDFAFNYVHERVQFGTRIGEFQLMQGKIADMHVALSASRAYLY 310
+ R++++ P+GI D Y+ ER QFG + FQL Q K+ M + A +
Sbjct: 286 VSRVMVAWQPIGISMGIYDMCHRYLKERKQFGAPLAAFQLNQQKLVQMLGNVQAMFLMGW 345
Query: 311 SVAKACDRGSINSKECAGVFLVAAENAVKVALEAIQCLGGNGYINDYPTGRYLRDAKLYE 370
+ K + G + + + + A + A + LGGNG + D+ + D +
Sbjct: 346 RLCKLYETGQMTPGQASLGKAWISSKARETASLGRELLGGNGILADFLVAKAFCDLEPIY 405
Query: 371 IGAGTSEVRRIVIGRSIN 388
GT ++ +V GR +
Sbjct: 406 TYEGTYDINTLVTGREVT 423
>pdb|2IX5|A Chain A, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4 In Complex With Acetoacetyl-Coa
pdb|2IX5|B Chain B, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4 In Complex With Acetoacetyl-Coa
pdb|2IX5|C Chain C, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4 In Complex With Acetoacetyl-Coa
pdb|2IX5|D Chain D, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4 In Complex With Acetoacetyl-Coa
Length = 436
Score = 151 bits (382), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 106/378 (28%), Positives = 177/378 (46%), Gaps = 9/378 (2%)
Query: 11 LTEEQNKLRETVASYCKTHITPIAADIDSTNDFKDLRKVWKDFGQLGLLGITVPEEFGGS 70
LT E+ +R+ V + + PI + +F + G +G+ G ++ + +G
Sbjct: 55 LTPEEQAIRKKVRECMEKEVAPIMTEYWEKAEFP--FHITPKLGAMGVAGGSI-KGYGCP 111
Query: 71 EMGYLDHVIAMEELSRSSASVGLSFVAHSNLCVNQINRHATKQQKEKYLPALCSGEKIGC 130
+ + IA E++R AS + HS+L + I ++ QKEKYLP+L + C
Sbjct: 112 GLSITANAIATAEIARVDASCSTFILVHSSLGMLTIALCGSEAQKEKYLPSLAQLNTVAC 171
Query: 131 LAMSEPGSGSDVISMSLKAEKKGDMYVLNGNKFWITNGPDADIAVVYARTNPNADKKQHG 190
A++EP +GSD + A K + +NG K WI N AD+ +++AR N Q
Sbjct: 172 WALTEPDNGSDASGLGTTATKVEGGWKINGQKRWIGNSTFADLLIIFAR---NTTTNQ-- 226
Query: 191 ISTFIVEKGTPGFSKGKKLNKLGMRGSNTGELIFENCQVPAENLLGGENKGAYVLMSGLD 250
I+ FIV+K PG K NK+G+R G+++ +N VP E+ L G N L
Sbjct: 227 INGFIVKKDAPGLKATKIPNKIGLRMVQNGDILLQNVFVPDEDRLPGVNSFQDT-SKVLA 285
Query: 251 LERLVISAGPVGIMQACCDFAFNYVHERVQFGTRIGEFQLMQGKIADMHVALSASRAYLY 310
+ R++++ P+GI D Y+ ER QFG + FQL Q K+ M + A +
Sbjct: 286 VSRVMVAWQPIGISMGIYDMCHRYLKERKQFGAPLAAFQLNQQKLVQMLGNVQAMFLMGW 345
Query: 311 SVAKACDRGSINSKECAGVFLVAAENAVKVALEAIQCLGGNGYINDYPTGRYLRDAKLYE 370
+ K + G + + + + A + A + LGGNG + D+ + D +
Sbjct: 346 RLCKLYETGQMTPGQASLGKAWISSKARETASLGRELLGGNGILADFLVAKAFCDLEPIY 405
Query: 371 IGAGTSEVRRIVIGRSIN 388
GT ++ +V GR +
Sbjct: 406 TYEGTYDINTLVTGREVT 423
>pdb|4HR3|A Chain A, Structure Of A Putative Acyl-Coa Dehydrogenase From
Mycobacterium Abscessus
Length = 415
Score = 108 bits (269), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 90/344 (26%), Positives = 158/344 (45%), Gaps = 11/344 (3%)
Query: 57 GLLGITVPEEFGGSEMGYLDHVIAMEELSRSS-ASVGLSFVAHSNLCVNQINRHATKQQK 115
GL + +P+ G + ++ E++ RS A + A + + ++R+ +++QK
Sbjct: 71 GLWNLFLPDPELGGGLSNSEYAPLAEQMGRSLFAPTVFNCNAPDSGNMEVLHRYGSQEQK 130
Query: 116 EKYLPALCSGEKIGCLAMSEPG-SGSDVISMSLKAEKKGDMYVLNGNKFWITN--GPDAD 172
E +L L G+ M+EP + SD +M+ A +GD V+NG K+W T PD
Sbjct: 131 EVWLEPLLEGDIRSAFCMTEPDVASSDATNMAATAVVEGDEVVINGRKWWSTGVGHPDCK 190
Query: 173 IAVVYARTNPNADK-KQHGISTFIVEKGTPGFSKGKKLNKLGMRGSNTGELI--FENCQV 229
+ + T+PNA + +H S +V TPG + + L +G G + F+N ++
Sbjct: 191 VIIFMGLTDPNAHRYARH--SMVLVPMDTPGITVERMLPTMGFYDEPGGHGVVSFDNVRL 248
Query: 230 PAENLLGGENKGAYVLMSGLDLERLVISAGPVGIMQACCDFAFNYVHERVQFGTRIGEFQ 289
PA+ + G KG + L R+ + +G+ + + A +R FG +
Sbjct: 249 PADAFIAGPGKGFEIAQGRLGPGRVHHAMRLIGLAEVALEHACRRGLDRTAFGKPLVNLG 308
Query: 290 LMQGKIADMHVALSASRAYLYSVAKACDR-GSINSKECAGVFLVAAENAVKVALE-AIQC 347
+ +IAD +A++ +R + A D G + + VAA N + ++ AIQ
Sbjct: 309 GNRERIADARIAINQTRLLVLHAAWLLDTVGIMGALSAVSEIKVAAPNMAQQVIDMAIQI 368
Query: 348 LGGNGYINDYPTGRYLRDAKLYEIGAGTSEVRRIVIGRSINAEY 391
GG G ND+P +A+ + G EV R V+ R A+Y
Sbjct: 369 HGGGGLSNDFPLAAAWVNARALRLADGPDEVHRGVVARIELAKY 412
>pdb|2WBI|A Chain A, Crystal Structure Of Human Acyl-Coa Dehydrogenase 11
pdb|2WBI|B Chain B, Crystal Structure Of Human Acyl-Coa Dehydrogenase 11
Length = 428
Score = 102 bits (255), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 75/281 (26%), Positives = 126/281 (44%), Gaps = 8/281 (2%)
Query: 106 INRHATKQQKEKYLPALCSGEKIGCLAMSEPG-SGSDVISMSLKAEKKGDMYVLNGNKFW 164
++ + +++QK+++L L G C M+EP + SD ++ ++ D YV+NG K+W
Sbjct: 127 LHLYGSEEQKKQWLEPLLQGNITSCFCMTEPDVASSDATNIECSIQRDEDSYVINGKKWW 186
Query: 165 ITNG--PDADIAVVYARTNPNADKKQHGISTFIVEKGTPGFSKGKKLNKLGMRGSNTG-- 220
+ P IA+V RT + + S +V TPG + L+ G + G
Sbjct: 187 SSGAGNPKCKIAIVLGRTQNTSLSRHKQHSMILVPMNTPGVKIIRPLSVFGYTDNFHGGH 246
Query: 221 -ELIFENCQVPAENLLGGENKGAYVLMSGLDLERLVISAGPVGIMQACCDFAFNYVHERV 279
E+ F +VPA NL+ GE +G + L R+ VG+ + +R+
Sbjct: 247 FEIHFNQVRVPATNLILGEGRGFEISQGRLGPGRIHHCMRTVGLAERALQIMCERATQRI 306
Query: 280 QFGTRIGEFQLMQGKIADMHVALSASRAYLYSVAKACDR-GSINSKECAGVFLVAAENAV 338
F ++ +++ IA+ +A+ R A + D GS +K+ + VAA AV
Sbjct: 307 AFKKKLYAHEVVAHWIAESRIAIEKIRLLTLKAAHSMDTLGSAGAKKEIAMIKVAAPRAV 366
Query: 339 -KVALEAIQCLGGNGYINDYPTGRYLRDAKLYEIGAGTSEV 378
K+ AIQ GG G DYP ++ + G EV
Sbjct: 367 SKIVDWAIQVCGGAGVSQDYPLANMYAITRVLRLADGPDEV 407
>pdb|1R2J|A Chain A, Fkbi For Biosynthesis Of Methoxymalonyl Extender Unit Of
Fk520 Polyketide Immunosuppresant
Length = 366
Score = 100 bits (250), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 103/364 (28%), Positives = 158/364 (43%), Gaps = 32/364 (8%)
Query: 34 AADIDSTNDFKDLRKVWKDFGQLGLLGITVPEEFGGSEMG------YLDHVIAMEELSRS 87
AA+ D++ + R + G GLL V E GG +G + HV ++ RS
Sbjct: 16 AAEWDTSGELP--RDLLVRLGADGLLCAEVAAEHGGLGLGSRENGEFTAHVGSLCSSLRS 73
Query: 88 SASVGLSFVAHSNLCVNQINRHATKQQKEKYLPALCSGEKIGCLAMSEPGSGSDVISMSL 147
+ + + R Q+ +L L SG K+ + SE +GSD+ +M
Sbjct: 74 -------VMTSQGMAAWTVQRLGDAGQRATFLKELTSG-KLAAVGFSERQAGSDLSAMRT 125
Query: 148 KAEKKGDMYVLNGNKFWITNGPDADIAVVYARTNPNADKKQHGISTFIVEKGTPGFSKGK 207
+ GD V++G+K W T AD VV+ + + +V TPG +
Sbjct: 126 RVRLDGDTAVVDGHKVWTTAAAYADHLVVFGLQEDGSG------AVVVVPADTPGVRVER 179
Query: 208 KLNKLGMRGSNTGELIFENCQVPAENLLGGENKGAYVLMSG-LDLERLVISAGPVGIMQA 266
G R + +L + +VPA +L G +L++ L R ++ G VGI++A
Sbjct: 180 VPKPSGCRAAGHADLHLDQVRVPAGAVLAGSGASLPMLVAASLAYGRKSVAWGCVGILRA 239
Query: 267 CCDFAFNYVHERVQFGTRIGEFQLMQGKIADMHVALS-ASRAYLYSVAKACDRGSINSKE 325
C A + R QFG +G+ QL+ G IAD+ A A+R Y A D S E
Sbjct: 240 CRTAAVAHARTREQFGRPLGDHQLVAGHIADLWTAEQIAARVCEY----ASDHWDEGSPE 295
Query: 326 CAGVFLVA----AENAVKVALEAIQCLGGNGYINDYPTGRYLRDAKLYEIGAGTSEVRRI 381
++A AE A A A Q L G + R RDAKL EI G+SE+ R+
Sbjct: 296 MVPATILAKHVAAERAAAGAATAAQVLASAGAREGHVVERAYRDAKLMEIIEGSSEMCRV 355
Query: 382 VIGR 385
++ +
Sbjct: 356 MLAQ 359
>pdb|3DJL|A Chain A, Crystal Structure Of Alkylation Response Protein E. Coli
Aidb
pdb|3U33|A Chain A, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|B Chain B, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|C Chain C, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|D Chain D, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|E Chain E, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|F Chain F, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|G Chain G, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|H Chain H, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|I Chain I, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|J Chain J, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|K Chain K, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|L Chain L, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
Length = 541
Score = 82.4 bits (202), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 97/355 (27%), Positives = 161/355 (45%), Gaps = 54/355 (15%)
Query: 77 HVIAMEELSRSSASVGLS--FVAHS-----NLCVNQINRHATKQQKEKYLPA-------- 121
H +A EE +RS A V + F+ H+ +LC + AT + LPA
Sbjct: 101 HNLAWEEDARSGAFVARAARFMLHAQVEAGSLCPITMTFAATPLLLQ-MLPAPFQDWTTP 159
Query: 122 ----------LCSGEKIGCL---AMSEPGSGSDVISMSLKAEKKGD-MYVLNGNKFWITN 167
L G+K G L M+E GSDV+S + +AE+ D Y L G+K W +
Sbjct: 160 LLSDRYDSHLLPGGQKRGLLIGMGMTEKQGGSDVMSNTTRAERLEDGSYRLVGHK-WFFS 218
Query: 168 GPDADIAVVYARTNPNADKKQHGISTFIVEKGTP-GFSKGKKL----NKLGMRGSNTGEL 222
P +D +V A+T G+S F V + P G +L +KLG R + + E+
Sbjct: 219 VPQSDAHLVLAQT-------AGGLSCFFVPRFLPDGQRNAIRLERLKDKLGNRSNASCEV 271
Query: 223 IFENCQVPAENLLGGENKGAYVLMSGLDLERLVISAGPVGIMQACCDFAFNYVHERVQFG 282
F++ LLG E +G +++ + R + G +M+ A + H+R FG
Sbjct: 272 EFQDA---IGWLLGLEGEGIRLILKMGGMTRFDCALGSHAMMRRAFSLAIYHAHQRHVFG 328
Query: 283 TRIGEFQLMQGKIADMHVALSASRAYLYSVAKACDRGSINSKEC--AGVFLVAA-----E 335
+ + LM+ ++ M + L A L+ +A+A DR + ++KE A +F AA +
Sbjct: 329 NPLIQQPLMRHVLSRMALQLEGQTALLFRLARAWDRRA-DAKEALWARLFTPAAKFVICK 387
Query: 336 NAVKVALEAIQCLGGNGYINDYPTGRYLRDAKLYEIGAGTSEVRRIVIGRSINAE 390
+ EA++ LGG GY + R R+ + I G+ + + + R +N +
Sbjct: 388 RGMPFVAEAMEVLGGIGYCEESELPRLYREMPVNSIWEGSGNIMCLDVLRVLNKQ 442
>pdb|3MXL|A Chain A, Crystal Structure Of Nitrososynthase From Micromonospora
Carbonacea Var. Africana
pdb|3MXL|B Chain B, Crystal Structure Of Nitrososynthase From Micromonospora
Carbonacea Var. Africana
pdb|3MXL|C Chain C, Crystal Structure Of Nitrososynthase From Micromonospora
Carbonacea Var. Africana
pdb|3MXL|D Chain D, Crystal Structure Of Nitrososynthase From Micromonospora
Carbonacea Var. Africana
Length = 395
Score = 81.6 bits (200), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 92/356 (25%), Positives = 150/356 (42%), Gaps = 28/356 (7%)
Query: 29 HITPIAADIDSTNDFKDLRKVWKDFGQLGLLGITVPEEFGGSEMGYL-DHVIAMEELSRS 87
I+ AAD D T F + ++ F +LGL+G TVP E GG + L D A+ L+ +
Sbjct: 26 RISAEAADRDRTGTFP--VEAFEQFAKLGLMGATVPAELGGLGLTRLYDVATALMRLAEA 83
Query: 88 SASVGLSFVAH--SNLCVNQINRHAT---KQQKEKYLPALCSGEKIGCLAMSE-PGSGSD 141
AS L++ L + +H T + E+ L A+ GE C A+ + PG
Sbjct: 84 DASTALAWHVQLSRGLTLTYEWQHGTPPVRAMAERLLRAMAEGEAAVCGALKDAPG---- 139
Query: 142 VISMSLKAEKKGDMYVLNGNKFWITNGPDADIAVVYARTNPNADKKQHGISTFIVEKGTP 201
+ L ++ G ++L+G K ++ P A V+A+ D ++ +V + P
Sbjct: 140 -VVTELHSDGAGG-WLLSGRKVLVSMAPIATHFFVHAQRRD--DDGSVFLAVPVVHRDAP 195
Query: 202 GFSKGKKLNKLGMRGSNTGELIFENCQVPAENLLGGENKGAY--VLMSGLDLERLVISAG 259
G + + LGMR S T E++F+ C V A+ LL GA +++G + + +
Sbjct: 196 GLTVLDNWDGLGMRASGTLEVVFDRCPVRADELLERGPVGARRDAVLAGQTVSSITMLGI 255
Query: 260 PVGIMQACCDFAFNYVHERVQFGTRIGEFQLMQGKIADMHVALSASRAYLYSVAKAC--- 316
GI QA D A + R R G L+ G ++ + A L + A
Sbjct: 256 YAGIAQAARDIAVGFCAGR-GGEPRAGARALVAGLDTRLYALRTTVGAALTNADAASVDL 314
Query: 317 -----DRGSINSKECAGVFLVAAENAVKVALEAIQCLGGNGYINDYPTGRYLRDAK 367
+RG + E A V + + +GG Y +P R RD +
Sbjct: 315 SGDPDERGRRMMTPFQYAKMTVNELAPAVVDDCLSLVGGLAYTAGHPLSRLYRDVR 370
>pdb|3M9V|A Chain A, X-Ray Structure Of A Kijd3 In Complex With Dtdp
Length = 439
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 91/379 (24%), Positives = 165/379 (43%), Gaps = 50/379 (13%)
Query: 11 LTEEQNKLRETVASYCKTHITPIAADIDSTNDFKDLRKVWKDFGQLGLLGITVPEEFGGS 70
L ++R T A + + P T+ F LRK GL+G TVP E GG
Sbjct: 31 LAAHLPRIRSTAAEHDRDGTFP-------TDTFDALRKD-------GLMGATVPAELGGL 76
Query: 71 EMGYL-DHVIAMEELSRSSASVGLSFVAH--SNLCVNQINRHATKQQK---EKYLPALCS 124
+ L D +A+ ++R+ AS L+ L + RH ++ + E+ L + +
Sbjct: 77 GVDRLYDVAVALLAVARADASTALALHMQLSRGLTLGYEWRHGDERARTLAERILRGMVA 136
Query: 125 GEKIGCLAMSEPGSGSDVISMSLKAEKKGDMYVLNGNKFWITNGPDADIAVVYARTNPNA 184
G+ + C + + +L+ + G ++L+G K ++ P V+ ART+
Sbjct: 137 GDAVVCSGIKD----HHTAVTTLRPDGAGG-WLLSGRKTLVSMAPVGTHFVINARTDGTD 191
Query: 185 DKKQHGISTFIVEKGTPGFSKGKKLNKLGMRGSNTGELIFENCQVPAENLLGGENKGAY- 243
+ +++ +V + TPGF+ + LGMR S T +++F++C +PA+++L + GA
Sbjct: 192 GPPR--LASPVVTRDTPGFTVLDNWDGLGMRASGTVDIVFDDCPIPADHVLMRDPVGARN 249
Query: 244 -VLMSGLDLERLVISAGPVGIMQACCDFAFNYVHERVQFGTRIGEFQLMQGKIADMHVAL 302
+++G + + + VG+ QA D A + R + + L +A++ L
Sbjct: 250 DAVLAGQTVSSVSVLGVYVGVAQAAYDTAVAALERRPE-PPQAAALTL----VAEIDSRL 304
Query: 303 SASRAYLYSVAKACD--------------RGSINSKECAGVFLVAAENAVKVALEAIQCL 348
A RA S A D R + +CA L A ++ + + +
Sbjct: 305 YALRATAGSALTAADALSADLSGDMDERGRQMMRHFQCAK--LAVNRLAPEIVSDCLSLV 362
Query: 349 GGNGYINDYPTGRYLRDAK 367
GG Y +P R LRD +
Sbjct: 363 GGASYTAGHPLARLLRDVQ 381
>pdb|3D9D|A Chain A, Nitroalkane Oxidase: Mutant D402n Crystallized With
1-Nitrohexane
pdb|3D9D|B Chain B, Nitroalkane Oxidase: Mutant D402n Crystallized With
1-Nitrohexane
pdb|3D9D|C Chain C, Nitroalkane Oxidase: Mutant D402n Crystallized With
1-Nitrohexane
pdb|3D9D|D Chain D, Nitroalkane Oxidase: Mutant D402n Crystallized With
1-Nitrohexane
pdb|3D9E|A Chain A, Nitroalkane Oxidase: Active Site Mutant D402n Crystallized
With 1- Nitrooctane
pdb|3D9E|B Chain B, Nitroalkane Oxidase: Active Site Mutant D402n Crystallized
With 1- Nitrooctane
pdb|3D9E|C Chain C, Nitroalkane Oxidase: Active Site Mutant D402n Crystallized
With 1- Nitrooctane
pdb|3D9E|D Chain D, Nitroalkane Oxidase: Active Site Mutant D402n Crystallized
With 1- Nitrooctane
pdb|3FCJ|A Chain A, Nitroalkane Oxidase: Mutant402n Crystallized With
Nitroethane
pdb|3FCJ|B Chain B, Nitroalkane Oxidase: Mutant402n Crystallized With
Nitroethane
pdb|3FCJ|C Chain C, Nitroalkane Oxidase: Mutant402n Crystallized With
Nitroethane
pdb|3FCJ|D Chain D, Nitroalkane Oxidase: Mutant402n Crystallized With
Nitroethane
Length = 438
Score = 75.9 bits (185), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 96/422 (22%), Positives = 174/422 (41%), Gaps = 45/422 (10%)
Query: 9 YDLTEEQNKLRETVASYCKTHITPIAADIDSTND----FKDLRKVWKDFGQLGLLGITVP 64
+ L+ Q + R ++ T +T +A+ + D F+ R +++ + GL+ VP
Sbjct: 3 FKLSPSQLEARRHAQAFANTVLTKASAEYSTQKDQLSRFQATRPFYREAVRHGLIKAQVP 62
Query: 65 EEFGGSEMGYLDHVIAMEELSRSSASVGLSFVAHSNLCVNQINRHATKQQKEKYLPALCS 124
GG+ + I +EEL + ++ VA + L + + + +EK+L S
Sbjct: 63 IPLGGTMESLVHESIILEELFAVEPATSITIVA-TALGLMPVILCDSPSLQEKFLKPFIS 121
Query: 125 --GEKIGCLAMSEPGSGSDVIS-----MSLKAEKKGDMYVLNGNKFWITN--GPD---AD 172
GE + L SEP ++ + + A K G+ +V++G K W +N G D AD
Sbjct: 122 GEGEPLASLMHSEPNGTANWLQKGGPGLQTTARKVGNEWVISGEKLWPSNSGGWDYKGAD 181
Query: 173 IAVVYART--------NPNADKKQHGISTFIVEKGTPGFSKGKKLNKLG---------MR 215
+A V R +PN D I+ +V + T +K LG
Sbjct: 182 LACVVCRVSDDPSKPQDPNVDPATQ-IAVLLVTRETIANNKKDAYQILGEPELAGHITTS 240
Query: 216 GSNTGELIFENCQVPAENLLGGEN-KGAYVLMSGLDLERLVISAGPVGIMQACCDFAFNY 274
G +T F VP ENLL K ++ + + ++ A +G +A + A +
Sbjct: 241 GPHTR---FTEFHVPHENLLCTPGLKAQGLVETAFAMSAALVGAMAIGTARAAFEEALVF 297
Query: 275 VHERVQFGTR-IGEFQLMQGKIADMHVALSASRAYLYSVAKACDRGSINSK---ECA-GV 329
+ G++ I E Q + K+ D + L SR ++ + ++ K E A
Sbjct: 298 AKSDTRGGSKHIIEHQSVADKLIDCKIRLETSRLLVWKAVTTLEDEALEWKVKLEMAMQT 357
Query: 330 FLVAAENAVKVALEAIQCLGGNGYINDYPTGRYLRDAKLYEI-GAGTSEVRRIVIGRSIN 388
+ + AV+ ++A++ +G Y D R L + Y + G +RR + R +
Sbjct: 358 KIYTTDVAVECVIDAMKAVGMKSYAKDMSFPRLLNEVMCYPLFNGGNIGLRRRQMQRVMA 417
Query: 389 AE 390
E
Sbjct: 418 LE 419
>pdb|2REH|A Chain A, Mechanistic And Structural Analyses Of The Roles Of Arg409
And Asp402 In The Reaction Of The Flavoprotein
Nitroalkane Oxidase
pdb|2REH|B Chain B, Mechanistic And Structural Analyses Of The Roles Of Arg409
And Asp402 In The Reaction Of The Flavoprotein
Nitroalkane Oxidase
pdb|2REH|C Chain C, Mechanistic And Structural Analyses Of The Roles Of Arg409
And Asp402 In The Reaction Of The Flavoprotein
Nitroalkane Oxidase
pdb|2REH|D Chain D, Mechanistic And Structural Analyses Of The Roles Of Arg409
And Asp402 In The Reaction Of The Flavoprotein
Nitroalkane Oxidase
Length = 439
Score = 75.9 bits (185), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 92/405 (22%), Positives = 167/405 (41%), Gaps = 44/405 (10%)
Query: 9 YDLTEEQNKLRETVASYCKTHITPIAADIDSTND----FKDLRKVWKDFGQLGLLGITVP 64
+ L+ Q + R ++ T +T +A+ + D F+ R +++ + GL+ VP
Sbjct: 4 FKLSPSQLEARRHAQAFANTVLTKASAEYSTQKDQLSRFQATRPFYREAVRHGLIKAQVP 63
Query: 65 EEFGGSEMGYLDHVIAMEELSRSSASVGLSFVAHSNLCVNQINRHATKQQKEKYLPALCS 124
GG+ + I +EEL + ++ VA + L + + + +EK+L S
Sbjct: 64 IPLGGTMESLVHESIILEELFAVEPATSITIVA-TALGLMPVILCDSPSLQEKFLKPFIS 122
Query: 125 --GEKIGCLAMSEPGSGSDVIS-----MSLKAEKKGDMYVLNGNKFWITN--GPD---AD 172
GE + L SEP ++ + + A K G+ +V++G K W +N G D AD
Sbjct: 123 GEGEPLASLMHSEPNGTANWLQKGGPGLQTTARKVGNEWVISGEKLWPSNSGGWDYKGAD 182
Query: 173 IAVVYART--------NPNADKKQHGISTFIVEKGTPGFSKGKKLNKLG---------MR 215
+A V R +PN D I+ +V + T +K LG
Sbjct: 183 LACVVCRVSDDPSKPQDPNVDPATQ-IAVLLVTRETIANNKKDAYQILGEPELAGHITTS 241
Query: 216 GSNTGELIFENCQVPAENLLGGEN-KGAYVLMSGLDLERLVISAGPVGIMQACCDFAFNY 274
G +T F VP ENLL K ++ + + ++ A +G +A + A +
Sbjct: 242 GPHTR---FTEFHVPHENLLCTPGLKAQGLVETAFAMSAALVGAMAIGTARAAFEEALVF 298
Query: 275 VHERVQFGTR-IGEFQLMQGKIADMHVALSASRAYLYSVAKACDRGSINSK---ECA-GV 329
+ G++ I E Q + K+ D + L SR ++ + ++ K E A
Sbjct: 299 AKSDTRGGSKHIIEHQSVADKLIDCKIRLETSRLLVWKAVTTLEDEALEWKVKLEMAMQT 358
Query: 330 FLVAAENAVKVALEAIQCLGGNGYINDYPTGRYLRDAKLYEIGAG 374
+ + AV+ ++A++ +G Y D R L + Y + G
Sbjct: 359 KIYTTDVAVECVIDAMKAVGMKSYAKDMSFPRLLNEVMCYPLFEG 403
>pdb|2C0U|A Chain A, Crystal Structure Of A Covalent Complex Of Nitroalkane
Oxidase Trapped During Substrate Turnover
pdb|2C0U|B Chain B, Crystal Structure Of A Covalent Complex Of Nitroalkane
Oxidase Trapped During Substrate Turnover
pdb|2C0U|C Chain C, Crystal Structure Of A Covalent Complex Of Nitroalkane
Oxidase Trapped During Substrate Turnover
pdb|2C0U|D Chain D, Crystal Structure Of A Covalent Complex Of Nitroalkane
Oxidase Trapped During Substrate Turnover
Length = 439
Score = 75.9 bits (185), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 90/405 (22%), Positives = 163/405 (40%), Gaps = 44/405 (10%)
Query: 9 YDLTEEQNKLRETVASYCKTHITPIAADIDSTND----FKDLRKVWKDFGQLGLLGITVP 64
+ L+ Q + R ++ T +T +A+ + D F+ R +++ + GL+ VP
Sbjct: 4 FKLSPSQLEARRHAQAFANTVLTKASAEYSTQKDQLSRFQATRPFYREAVRHGLIKAQVP 63
Query: 65 EEFGGSEMGYLDHVIAMEELSRSSASVGLSFVAHSNLCVNQINRHATKQQKEKYLPALCS 124
GG+ + I +EEL + ++ VA + L + + + +EK+L S
Sbjct: 64 IPLGGTXESLVHESIILEELFAVEPATSITIVA-TALGLXPVILCDSPSLQEKFLKPFIS 122
Query: 125 --GEKIGCLAMSEPGSGSDVIS-----MSLKAEKKGDMYVLNGNKFWITN--GPD---AD 172
GE + L SEP ++ + + A K G+ +V++G K W +N G D AD
Sbjct: 123 GEGEPLASLXHSEPNGTANWLQKGGPGLQTTARKVGNEWVISGEKLWPSNSGGWDYKGAD 182
Query: 173 IAVVYART--------NPNADKKQHGISTFIVEKGTPGFSKGKKLNKLG---------MR 215
+A V R +PN D I+ +V + T +K LG
Sbjct: 183 LACVVCRVSDDPSKPQDPNVDPATQ-IAVLLVTRETIANNKKDAYQILGEPELAGHITTS 241
Query: 216 GSNTGELIFENCQVPAENLLGGEN-KGAYVLMSGLDLERLVISAGPVGIMQACCDFAFNY 274
G +T F VP ENLL K ++ + ++ A +G +A + A +
Sbjct: 242 GPHTR---FTEFHVPHENLLCTPGLKAQGLVETAFAXSAALVGAXAIGTARAAFEEALVF 298
Query: 275 VHERVQFGTR-IGEFQLMQGKIADMHVALSASRAYLYSVAKACDRGSINSK----ECAGV 329
+ G++ I E Q + K+ D + L SR ++ + ++ K
Sbjct: 299 AKSDTRGGSKHIIEHQSVADKLIDCKIRLETSRLLVWKAVTTLEDEALEWKVKLEXAXQT 358
Query: 330 FLVAAENAVKVALEAIQCLGGNGYINDYPTGRYLRDAKLYEIGAG 374
+ + AV+ ++A + +G Y D R L + Y + G
Sbjct: 359 KIYTTDVAVECVIDAXKAVGXKSYAKDXSFPRLLNEVXCYPLFDG 403
>pdb|3D9G|A Chain A, Nitroalkane Oxidase: Wild Type Crystallized In A Trapped
State Forming A Cyanoadduct With Fad
pdb|3D9G|B Chain B, Nitroalkane Oxidase: Wild Type Crystallized In A Trapped
State Forming A Cyanoadduct With Fad
pdb|3D9G|C Chain C, Nitroalkane Oxidase: Wild Type Crystallized In A Trapped
State Forming A Cyanoadduct With Fad
pdb|3D9G|D Chain D, Nitroalkane Oxidase: Wild Type Crystallized In A Trapped
State Forming A Cyanoadduct With Fad
Length = 438
Score = 75.5 bits (184), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 96/422 (22%), Positives = 174/422 (41%), Gaps = 45/422 (10%)
Query: 9 YDLTEEQNKLRETVASYCKTHITPIAADIDSTND----FKDLRKVWKDFGQLGLLGITVP 64
+ L+ Q + R ++ T +T +A+ + D F+ R +++ + GL+ VP
Sbjct: 3 FKLSPSQLEARRHAQAFANTVLTKASAEYSTQKDQLSRFQATRPFYREAVRHGLIKAQVP 62
Query: 65 EEFGGSEMGYLDHVIAMEELSRSSASVGLSFVAHSNLCVNQINRHATKQQKEKYLPALCS 124
GG+ + I +EEL + ++ VA + L + + + +EK+L S
Sbjct: 63 IPLGGTMESLVHESIILEELFAVEPATSITIVA-TALGLMPVILCDSPSLQEKFLKPFIS 121
Query: 125 --GEKIGCLAMSEPGSGSDVIS-----MSLKAEKKGDMYVLNGNKFWITN--GPD---AD 172
GE + L SEP ++ + + A K G+ +V++G K W +N G D AD
Sbjct: 122 GEGEPLASLMHSEPNGTANWLQKGGPGLQTTARKVGNEWVISGEKLWPSNSGGWDYKGAD 181
Query: 173 IAVVYART--------NPNADKKQHGISTFIVEKGTPGFSKGKKLNKLG---------MR 215
+A V R +PN D I+ +V + T +K LG
Sbjct: 182 LACVVCRVSDDPSKPQDPNVDPATQ-IAVLLVTRETIANNKKDAYQILGEPELAGHITTS 240
Query: 216 GSNTGELIFENCQVPAENLLGGEN-KGAYVLMSGLDLERLVISAGPVGIMQACCDFAFNY 274
G +T F VP ENLL K ++ + + ++ A +G +A + A +
Sbjct: 241 GPHTR---FTEFHVPHENLLCTPGLKAQGLVETAFAMSAALVGAMAIGTARAAFEEALVF 297
Query: 275 VHERVQFGTR-IGEFQLMQGKIADMHVALSASRAYLYSVAKACDRGSINSK---ECA-GV 329
+ G++ I E Q + K+ D + L SR ++ + ++ K E A
Sbjct: 298 AKSDTRGGSKHIIEHQSVADKLIDCKIRLETSRLLVWKAVTTLEDEALEWKVKLEMAMQT 357
Query: 330 FLVAAENAVKVALEAIQCLGGNGYINDYPTGRYLRDAKLYEI-GAGTSEVRRIVIGRSIN 388
+ + AV+ ++A++ +G Y D R L + Y + G +RR + R +
Sbjct: 358 KIYTTDVAVECVIDAMKAVGMKSYAKDMSFPRLLNEVMCYPLFDGGNIGLRRRQMQRVMA 417
Query: 389 AE 390
E
Sbjct: 418 LE 419
>pdb|2ZAF|A Chain A, Mechanistic And Structural Analyses Of The Roles Of Arg409
And Asp402 In The Reaction Of The Flavoprotein
Nitroalkane Oxidase
pdb|2ZAF|B Chain B, Mechanistic And Structural Analyses Of The Roles Of Arg409
And Asp402 In The Reaction Of The Flavoprotein
Nitroalkane Oxidase
pdb|2ZAF|C Chain C, Mechanistic And Structural Analyses Of The Roles Of Arg409
And Asp402 In The Reaction Of The Flavoprotein
Nitroalkane Oxidase
pdb|2ZAF|D Chain D, Mechanistic And Structural Analyses Of The Roles Of Arg409
And Asp402 In The Reaction Of The Flavoprotein
Nitroalkane Oxidase
Length = 439
Score = 75.5 bits (184), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 92/405 (22%), Positives = 167/405 (41%), Gaps = 44/405 (10%)
Query: 9 YDLTEEQNKLRETVASYCKTHITPIAADIDSTND----FKDLRKVWKDFGQLGLLGITVP 64
+ L+ Q + R ++ T +T +A+ + D F+ R +++ + GL+ VP
Sbjct: 4 FKLSPSQLEARRHAQAFANTVLTKASAEYSTQKDQLSRFQATRPFYREAVRHGLIKAQVP 63
Query: 65 EEFGGSEMGYLDHVIAMEELSRSSASVGLSFVAHSNLCVNQINRHATKQQKEKYLPALCS 124
GG+ + I +EEL + ++ VA + L + + + +EK+L S
Sbjct: 64 IPLGGTMESLVHESIILEELFAVEPATSITIVA-TALGLMPVILCDSPSLQEKFLKPFIS 122
Query: 125 --GEKIGCLAMSEPGSGSDVIS-----MSLKAEKKGDMYVLNGNKFWITN--GPD---AD 172
GE + L SEP ++ + + A K G+ +V++G K W +N G D AD
Sbjct: 123 GEGEPLASLMHSEPNGTANWLQKGGPGLQTTARKVGNEWVISGEKLWPSNSGGWDYKGAD 182
Query: 173 IAVVYART--------NPNADKKQHGISTFIVEKGTPGFSKGKKLNKLG---------MR 215
+A V R +PN D I+ +V + T +K LG
Sbjct: 183 LACVVCRVSDDPSKPQDPNVDPATQ-IAVLLVTRETIANNKKDAYQILGEPELAGHITTS 241
Query: 216 GSNTGELIFENCQVPAENLLGGEN-KGAYVLMSGLDLERLVISAGPVGIMQACCDFAFNY 274
G +T F VP ENLL K ++ + + ++ A +G +A + A +
Sbjct: 242 GPHTR---FTEFHVPHENLLCTPGLKAQGLVETAFAMSAALVGAMAIGTARAAFEEALVF 298
Query: 275 VHERVQFGTR-IGEFQLMQGKIADMHVALSASRAYLYSVAKACDRGSINSK---ECA-GV 329
+ G++ I E Q + K+ D + L SR ++ + ++ K E A
Sbjct: 299 AKSDTRGGSKHIIEHQSVADKLIDCKIRLETSRLLVWKAVTTLEDEALEWKVKLEMAMQT 358
Query: 330 FLVAAENAVKVALEAIQCLGGNGYINDYPTGRYLRDAKLYEIGAG 374
+ + AV+ ++A++ +G Y D R L + Y + G
Sbjct: 359 KIYTTDVAVECVIDAMKAVGMKSYAKDMSFPRLLNEVMCYPLFDG 403
>pdb|2C12|A Chain A, Crystal Structure Of Nitroalkane Oxidase In Complex With
Spermine, A Competitive Inhibitor
pdb|2C12|B Chain B, Crystal Structure Of Nitroalkane Oxidase In Complex With
Spermine, A Competitive Inhibitor
pdb|2C12|C Chain C, Crystal Structure Of Nitroalkane Oxidase In Complex With
Spermine, A Competitive Inhibitor
pdb|2C12|D Chain D, Crystal Structure Of Nitroalkane Oxidase In Complex With
Spermine, A Competitive Inhibitor
pdb|2C12|E Chain E, Crystal Structure Of Nitroalkane Oxidase In Complex With
Spermine, A Competitive Inhibitor
pdb|2C12|F Chain F, Crystal Structure Of Nitroalkane Oxidase In Complex With
Spermine, A Competitive Inhibitor
Length = 439
Score = 75.5 bits (184), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 92/405 (22%), Positives = 167/405 (41%), Gaps = 44/405 (10%)
Query: 9 YDLTEEQNKLRETVASYCKTHITPIAADIDSTND----FKDLRKVWKDFGQLGLLGITVP 64
+ L+ Q + R ++ T +T +A+ + D F+ R +++ + GL+ VP
Sbjct: 4 FKLSPSQLEARRHAQAFANTVLTKASAEYSTQKDQLSRFQATRPFYREAVRHGLIKAQVP 63
Query: 65 EEFGGSEMGYLDHVIAMEELSRSSASVGLSFVAHSNLCVNQINRHATKQQKEKYLPALCS 124
GG+ + I +EEL + ++ VA + L + + + +EK+L S
Sbjct: 64 IPLGGTMESLVHESIILEELFAVEPATSITIVA-TALGLMPVILCDSPSLQEKFLKPFIS 122
Query: 125 --GEKIGCLAMSEPGSGSDVIS-----MSLKAEKKGDMYVLNGNKFWITN--GPD---AD 172
GE + L SEP ++ + + A K G+ +V++G K W +N G D AD
Sbjct: 123 GEGEPLASLMHSEPNGTANWLQKGGPGLQTTARKVGNEWVISGEKLWPSNSGGWDYKGAD 182
Query: 173 IAVVYART--------NPNADKKQHGISTFIVEKGTPGFSKGKKLNKLG---------MR 215
+A V R +PN D I+ +V + T +K LG
Sbjct: 183 LACVVCRVSDDPSKPQDPNVDPATQ-IAVLLVTRETIANNKKDAYQILGEPELAGHITTS 241
Query: 216 GSNTGELIFENCQVPAENLLGGEN-KGAYVLMSGLDLERLVISAGPVGIMQACCDFAFNY 274
G +T F VP ENLL K ++ + + ++ A +G +A + A +
Sbjct: 242 GPHTR---FTEFHVPHENLLCTPGLKAQGLVETAFAMSAALVGAMAIGTARAAFEEALVF 298
Query: 275 VHERVQFGTR-IGEFQLMQGKIADMHVALSASRAYLYSVAKACDRGSINSK---ECA-GV 329
+ G++ I E Q + K+ D + L SR ++ + ++ K E A
Sbjct: 299 AKSDTRGGSKHIIEHQSVADKLIDCKIRLETSRLLVWKAVTTLEDEALEWKVKLEMAMQT 358
Query: 330 FLVAAENAVKVALEAIQCLGGNGYINDYPTGRYLRDAKLYEIGAG 374
+ + AV+ ++A++ +G Y D R L + Y + G
Sbjct: 359 KIYTTDVAVECVIDAMKAVGMKSYAKDMSFPRLLNEVMCYPLFDG 403
>pdb|3D9F|A Chain A, Nitroalkane Oxidase: Active Site Mutant S276a Crystallized
With 1- Nitrohexane
pdb|3D9F|B Chain B, Nitroalkane Oxidase: Active Site Mutant S276a Crystallized
With 1- Nitrohexane
pdb|3D9F|C Chain C, Nitroalkane Oxidase: Active Site Mutant S276a Crystallized
With 1- Nitrohexane
pdb|3D9F|D Chain D, Nitroalkane Oxidase: Active Site Mutant S276a Crystallized
With 1- Nitrohexane
Length = 438
Score = 75.1 bits (183), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 96/422 (22%), Positives = 174/422 (41%), Gaps = 45/422 (10%)
Query: 9 YDLTEEQNKLRETVASYCKTHITPIAADIDSTND----FKDLRKVWKDFGQLGLLGITVP 64
+ L+ Q + R ++ T +T +A+ + D F+ R +++ + GL+ VP
Sbjct: 3 FKLSPSQLEARRHAQAFANTVLTKASAEYSTQKDQLSRFQATRPFYREAVRHGLIKAQVP 62
Query: 65 EEFGGSEMGYLDHVIAMEELSRSSASVGLSFVAHSNLCVNQINRHATKQQKEKYLPALCS 124
GG+ + I +EEL + ++ VA + L + + + +EK+L S
Sbjct: 63 IPLGGTMESLVHESIILEELFAVEPATSITIVA-TALGLMPVILCDSPSLQEKFLKPFIS 121
Query: 125 --GEKIGCLAMSEPGSGSDVIS-----MSLKAEKKGDMYVLNGNKFWITN--GPD---AD 172
GE + L SEP ++ + + A K G+ +V++G K W +N G D AD
Sbjct: 122 GEGEPLASLMHSEPNGTANWLQKGGPGLQTTARKVGNEWVISGEKLWPSNSGGWDYKGAD 181
Query: 173 IAVVYART--------NPNADKKQHGISTFIVEKGTPGFSKGKKLNKLG---------MR 215
+A V R +PN D I+ +V + T +K LG
Sbjct: 182 LACVVCRVSDDPSKPQDPNVDPATQ-IAVLLVTRETIANNKKDAYQILGEPELAGHITTS 240
Query: 216 GSNTGELIFENCQVPAENLLGGEN-KGAYVLMSGLDLERLVISAGPVGIMQACCDFAFNY 274
G +T F VP ENLL K ++ + + ++ A +G +A + A +
Sbjct: 241 GPHTR---FTEFHVPHENLLCTPGLKAQGLVETAFAMAAALVGAMAIGTARAAFEEALVF 297
Query: 275 VHERVQFGTR-IGEFQLMQGKIADMHVALSASRAYLYSVAKACDRGSINSK---ECA-GV 329
+ G++ I E Q + K+ D + L SR ++ + ++ K E A
Sbjct: 298 AKSDTRGGSKHIIEHQSVADKLIDCKIRLETSRLLVWKAVTTLEDEALEWKVKLEMAMQT 357
Query: 330 FLVAAENAVKVALEAIQCLGGNGYINDYPTGRYLRDAKLYEI-GAGTSEVRRIVIGRSIN 388
+ + AV+ ++A++ +G Y D R L + Y + G +RR + R +
Sbjct: 358 KIYTTDVAVECVIDAMKAVGMKSYAKDMSFPRLLNEVMCYPLFDGGNIGLRRRQMQRVMA 417
Query: 389 AE 390
E
Sbjct: 418 LE 419
>pdb|3MKH|A Chain A, Podospora Anserina Nitroalkane Oxidase
pdb|3MKH|B Chain B, Podospora Anserina Nitroalkane Oxidase
pdb|3MKH|C Chain C, Podospora Anserina Nitroalkane Oxidase
pdb|3MKH|D Chain D, Podospora Anserina Nitroalkane Oxidase
Length = 438
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 94/404 (23%), Positives = 158/404 (39%), Gaps = 33/404 (8%)
Query: 9 YDLTEEQNKLRETVASYCKTHITP-----IAADIDSTNDFKDLRKVWKDFGQLGLLGITV 63
+ L+ Q + S + + P + +S F+ + + G+L +
Sbjct: 5 FHLSASQKGTYQAARSLARNLLMPARQTYLQHPPNSPLRFQSTQPTYAAAVSAGILKGQI 64
Query: 64 PEEFGGSEMGYLDHVIAMEELSRSSASVGLSFVAHSNLCVNQINRHATKQQKEKYLPALC 123
GG+ ++ I +EE S L+ A + L + IN A Q E P L
Sbjct: 65 SPAHGGTGGTLIESAILVEECYSVEPSAALTIFA-TGLGLTPINLAAGPQHAEFLAPFLS 123
Query: 124 -SGEKIGCLAMSEPGSGSDVIS-----MSLKAEKKGDMYVLNGNKFWITN--GPD---AD 172
G + L SEPG ++ + A +GD +V+NG K W TN G D D
Sbjct: 124 GEGSPLASLVFSEPGGVANALEKGAPGFQTTARLEGDEWVINGEKMWATNCAGWDFKGCD 183
Query: 173 IAVVYAR--TNP--NADKKQHGISTFIVEK------GTPGFSKGKKLNKLGMRGSNTGEL 222
+A V R T P ++ + +V + G F + + G + +
Sbjct: 184 LACVVCRDATTPLEEGQDPENKVMIILVTRADLDRNGEGSFEVLRHVATPGHTSVSGPHV 243
Query: 223 IFENCQVPAENLLGGENKGAYVLMSGLDLERLVISAGPVGIMQACCDFAFNYVHERVQFG 282
+ N +VP +N+L +GA V D +++ A VG+M+A D A + E + G
Sbjct: 244 RYTNVRVPTKNVLCPAGQGAKVAFGAFDGSAVLVGAMGVGLMRAAFDAALKFAKEDNRGG 303
Query: 283 -TRIGEFQLMQGKIADMHVALSASRAYLYSVAKACDRGSINSKECAGVFLVA----AENA 337
+ E Q ++ + + A+RA + A A + G + + L A +E A
Sbjct: 304 AVPLLERQAFADLLSGVKIQTEAARALTWKAAHAMENGPGDYDARRELALAAKVFCSEAA 363
Query: 338 VKVALEAIQCLGGNGYINDYPTGRYLRDAKLYEI-GAGTSEVRR 380
VK + I +G + Y P L A + I G +RR
Sbjct: 364 VKACTDVINAVGISAYDLQRPFSDLLNTAVVLPIFDGGNVGIRR 407
>pdb|2FON|A Chain A, X-Ray Crystal Structure Of Leacx1, An Acyl-Coa Oxidase
From Lycopersicon Esculentum (Tomato)
pdb|2FON|B Chain B, X-Ray Crystal Structure Of Leacx1, An Acyl-Coa Oxidase
From Lycopersicon Esculentum (Tomato)
pdb|2FON|C Chain C, X-Ray Crystal Structure Of Leacx1, An Acyl-Coa Oxidase
From Lycopersicon Esculentum (Tomato)
Length = 683
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 62/220 (28%), Positives = 102/220 (46%), Gaps = 34/220 (15%)
Query: 98 HSNLCVNQINRHATKQQKEKYLPALCSGEKIGCLAMSEPGSGSDVISMSLKA--EKKGDM 155
H + + I T +Q+EK+LP + IGC A +E G GS+V + A + + D
Sbjct: 121 HWGMFIPAIKGQGTDKQQEKWLPLAYKMQIIGCYAQTELGHGSNVQGLETTATFDPQTDE 180
Query: 156 YV-----LNGNKFWITN-GPDADIAVVYARTNPNADKKQHGISTFIVE-------KGTPG 202
+V L +K+W G + AVVYAR D K +G++ FIV+ K PG
Sbjct: 181 FVIHSPTLTSSKWWPGGLGKVSTHAVVYARL--ITDGKDYGVNGFIVQLRSLEDHKPLPG 238
Query: 203 FSKGKKLNKLGMRGSNT---GELIFENCQVPAENLLGG----ENKGAYV-------LMSG 248
+ G K G N+ G L F++ ++P + +L +G YV L+ G
Sbjct: 239 VTVGDIGMKFGNGAYNSMDNGVLSFDHVRIPRDQMLMRVSQVTKEGKYVQSDIPRQLLYG 298
Query: 249 --LDLERLVISAGPVGIMQACCDFAFNYVHERVQFGTRIG 286
+ + + +++ + + +A C A Y R QFG++ G
Sbjct: 299 TMVYVRQSIVADASLAMSRAVC-IATRYSAVRRQFGSQNG 337
>pdb|4DOY|A Chain A, Crystal Structure Of Dibenzothiophene Desulfurization
Enzyme C
pdb|4DOY|B Chain B, Crystal Structure Of Dibenzothiophene Desulfurization
Enzyme C
pdb|4DOY|C Chain C, Crystal Structure Of Dibenzothiophene Desulfurization
Enzyme C
pdb|4DOY|D Chain D, Crystal Structure Of Dibenzothiophene Desulfurization
Enzyme C
pdb|4DOY|E Chain E, Crystal Structure Of Dibenzothiophene Desulfurization
Enzyme C
pdb|4DOY|F Chain F, Crystal Structure Of Dibenzothiophene Desulfurization
Enzyme C
pdb|4DOY|G Chain G, Crystal Structure Of Dibenzothiophene Desulfurization
Enzyme C
pdb|4DOY|H Chain H, Crystal Structure Of Dibenzothiophene Desulfurization
Enzyme C
Length = 437
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 87/411 (21%), Positives = 156/411 (37%), Gaps = 53/411 (12%)
Query: 27 KTHITPI-AADIDSTNDFKDLRKVWK------------------DFGQLGLLGITVPEEF 67
K H+ P AAD D + L + W+ D GLL + VP E+
Sbjct: 27 KQHVRPRDAADNDPVAVARGLAEKWRATAVERDRAGGSATAEREDLRASGLLSLLVPREY 86
Query: 68 GGSEMGYLDHVIAMEELSRSSASVGLSFVAHSNLCVNQINRHATKQQKEKYLPALCSGEK 127
GG + + + E++ + S+G F H I +++Q+E +
Sbjct: 87 GGWGADWPTAIEVVREIAAADGSLGHLFGYHLT-NAPMIELIGSQEQEEHLYTQIAQNNW 145
Query: 128 IGCLAMSEPGSGSDVISMSLKAEKKGD-MYVLNGNKFWITNGPDADIAVVYARTNPNADK 186
A SE + S V+ + A D YVLNG K + + +D+ V+ ++
Sbjct: 146 WTGNASSE--NNSHVLDWKVSATPTEDGGYVLNGTKHFCSGAKGSDLLFVFGVVQDDS-P 202
Query: 187 KQHGISTFIVEKGTPGFSKGKKLNKLGMRGSNTGELIFENCQVPAENLLGGENKGAYVLM 246
+Q I + G + +GMR +++G F N +V + +LG N A+VL
Sbjct: 203 QQGAIIAAAIPTSRAGVTPNDDWAAIGMRQTDSGSTDFHNVKVEPDEVLGAPN--AFVL- 259
Query: 247 SGLDLER---------LVISAGPVGIMQACCDFAFNYVHERVQFGTRIGEFQLMQGKIA- 296
+ + ER L+ + +GI D A Y + + T G Q +
Sbjct: 260 AFIQSERGSLFAPIAQLIFANVYLGIAHGALDAAREYTRTQARPWTPAGIQQATEDPYTI 319
Query: 297 ----DMHVALSA----SRAYLYSVAKACDRGSINSKE--------CAGVFLVAAENAVKV 340
+ +AL +R + + D+G + E +GV +A A+ +
Sbjct: 320 RSYGEFTIALQGADAAAREAAHLLQTVWDKGDALTPEDRGELMVKVSGVKALATNAALNI 379
Query: 341 ALEAIQCLGGNGYINDYPTGRYLRDAKLYEIGAGTSEVRRIVIGRSINAEY 391
+ + +G G Y R+ R+ + + + S V ++N +Y
Sbjct: 380 SSGVFEVIGARGTHPRYGFDRFWRNVRTHSLHDPVSYKIADVGKHTLNGQY 430
>pdb|1W07|A Chain A, Arabidopsis Thaliana Acyl-Coa Oxidase 1
pdb|1W07|B Chain B, Arabidopsis Thaliana Acyl-Coa Oxidase 1
Length = 659
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 64/247 (25%), Positives = 112/247 (45%), Gaps = 41/247 (16%)
Query: 98 HSNLCVNQINRHATKQQKEKYLPALCSGEKIGCLAMSEPGSGSDVISMSLKA--EKKGDM 155
H + V I T++Q++K+L + IGC A +E G GS+V + A + K D
Sbjct: 102 HWGMFVPAIKGQGTEEQQKKWLSLANKMQIIGCYAQTELGHGSNVQGLETTATLDPKTDE 161
Query: 156 YVLN-----GNKFWITN-GPDADIAVVYARTNPNADKKQHGISTFIVE-------KGTPG 202
+V++ +K+W G + AVVYAR N K +GI FIV+ P
Sbjct: 162 FVIHTPTQTASKWWPGGLGKVSTHAVVYARLITNG--KDYGIHGFIVQLRSLEDHSPLPN 219
Query: 203 FSKGKKLNKLGMRGSNT---GELIFENCQVPAENLLGGENK----GAYV-------LMSG 248
+ G K+G N+ G L+F++ ++P + +L +K G YV L+ G
Sbjct: 220 ITVGDIGTKMGNGAYNSMDNGFLMFDHVRIPRDQMLMRLSKVTREGEYVPSDVPKQLVYG 279
Query: 249 --LDLERLVISAGPVGIMQACCDFAFNYVHERVQFG-------TRIGEFQLMQGKIADMH 299
+ + + +++ + +A C A Y R QFG T++ +++ Q ++ +
Sbjct: 280 TMVYVRQTIVADASNALSRAVC-IATRYSAVRRQFGAHNGGIETQVIDYKTQQNRLFPLL 338
Query: 300 VALSASR 306
+ A R
Sbjct: 339 ASAYAFR 345
>pdb|1IS2|A Chain A, Crystal Structure Of Peroxisomal Acyl-coa Oxidase-ii From
Rat Liver
pdb|1IS2|B Chain B, Crystal Structure Of Peroxisomal Acyl-coa Oxidase-ii From
Rat Liver
pdb|2DDH|A Chain A, Crystal Structure Of Acyl-Coa Oxidase Complexed With
3-Oh-Dodecanoate
Length = 661
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 67/153 (43%), Gaps = 17/153 (11%)
Query: 98 HSNLCVNQINRHATKQQKEKYLPALCSGEKIGCLAMSEPGSGSDVISMSLKA--EKKGDM 155
H + + + AT +Q+E++ + E G A +E G G+ + + A + K
Sbjct: 103 HLGMFLPTLLHQATAEQQERFFMPAWNLEITGTYAQTEMGHGTHLRGLETTATYDPKTQE 162
Query: 156 YVLNGN-----KFWITN-GPDADIAVVYARTNPNADKKQHGISTFIV-------EKGTPG 202
++LN K+W G ++ A+V A+ + +G+ F+V K PG
Sbjct: 163 FILNSPTVTSIKWWPGGLGKTSNHAIVLAQLITQGEC--YGLHAFVVPIREIGTHKPLPG 220
Query: 203 FSKGKKLNKLGMRGSNTGELIFENCQVPAENLL 235
+ G K G + G L +N ++P EN+L
Sbjct: 221 ITVGDIGPKFGYEEMDNGYLKMDNYRIPRENML 253
>pdb|3OU5|A Chain A, Human Mitochondrial Serine Hydroxymethyltransferase 2
Length = 490
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 324 KECAGVFLVAAEN-AVKVALEAIQCLGGNGYINDYPTGRY 362
++C G+ L+A+EN + ALEA+ N Y YP RY
Sbjct: 52 RQCRGLELIASENFCSRAALEALGSCLNNKYSEGYPGKRY 91
>pdb|3KG9|A Chain A, Dehydratase Domain From Curk Module Of Curacin Polyketide
Synthase
pdb|3KG9|B Chain B, Dehydratase Domain From Curk Module Of Curacin Polyketide
Synthase
Length = 296
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Query: 37 IDSTNDFKDLRKVWKDFGQLGLLG-ITVPEEFGGSEMGYLDH 77
ID N F+ ++++WK GQ LG I +PEE G Y H
Sbjct: 171 IDYGNSFQGIKQLWK--GQGKALGKIALPEEIAGQATDYQLH 210
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,926,406
Number of Sequences: 62578
Number of extensions: 514826
Number of successful extensions: 1280
Number of sequences better than 100.0: 59
Number of HSP's better than 100.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1101
Number of HSP's gapped (non-prelim): 60
length of query: 392
length of database: 14,973,337
effective HSP length: 101
effective length of query: 291
effective length of database: 8,652,959
effective search space: 2518011069
effective search space used: 2518011069
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)