Query psy12318
Match_columns 392
No_of_seqs 140 out of 1353
Neff 9.6
Searched_HMMs 46136
Date Fri Aug 16 15:59:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12318.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12318hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0139|consensus 100.0 8.2E-80 1.8E-84 537.7 25.1 365 7-376 33-397 (398)
2 KOG0141|consensus 100.0 2.4E-78 5.1E-83 520.2 29.3 390 2-391 32-421 (421)
3 KOG0140|consensus 100.0 1.1E-76 2.3E-81 509.6 30.8 382 8-392 25-407 (408)
4 PLN02519 isovaleryl-CoA dehydr 100.0 3.6E-68 7.8E-73 511.6 44.5 388 1-390 16-403 (404)
5 PRK03354 crotonobetainyl-CoA d 100.0 2.9E-67 6.3E-72 501.8 43.6 379 7-392 1-380 (380)
6 cd01151 GCD Glutaryl-CoA dehyd 100.0 4.8E-67 1.1E-71 501.6 44.4 375 6-389 8-382 (386)
7 PRK12341 putative acyl-CoA deh 100.0 5.5E-67 1.2E-71 500.3 43.8 378 7-391 1-380 (381)
8 cd01162 IBD Isobutyryl-CoA deh 100.0 2.8E-66 6E-71 494.7 43.0 374 11-390 1-375 (375)
9 cd01157 MCAD Medium chain acyl 100.0 3.6E-66 7.9E-71 494.8 42.6 377 11-390 1-378 (378)
10 cd01156 IVD Isovaleryl-CoA deh 100.0 6.5E-66 1.4E-70 492.9 43.6 375 11-389 2-376 (376)
11 TIGR03207 cyc_hxne_CoA_dh cycl 100.0 4.9E-66 1.1E-70 492.5 42.0 370 11-386 1-370 (372)
12 PTZ00461 isovaleryl-CoA dehydr 100.0 1E-65 2.3E-70 495.4 42.8 375 9-392 35-410 (410)
13 cd01160 LCAD Long chain acyl-C 100.0 1.9E-65 4.1E-70 489.0 42.6 370 14-387 2-371 (372)
14 cd01161 VLCAD Very long chain 100.0 6.4E-65 1.4E-69 490.1 43.0 380 6-390 22-407 (409)
15 TIGR03203 pimD_small pimeloyl- 100.0 6.5E-65 1.4E-69 483.8 40.0 371 8-386 1-375 (378)
16 PLN02526 acyl-coenzyme A oxida 100.0 2.5E-64 5.3E-69 485.5 43.3 375 7-390 25-399 (412)
17 cd01158 SCAD_SBCAD Short chain 100.0 3E-64 6.6E-69 481.1 41.9 372 14-389 2-373 (373)
18 cd01155 ACAD_FadE2 Acyl-CoA de 100.0 1.1E-62 2.5E-67 472.4 40.7 375 14-388 2-393 (394)
19 PRK09463 fadE acyl-CoA dehydro 100.0 1.2E-62 2.6E-67 493.2 42.1 372 7-383 75-466 (777)
20 PRK13026 acyl-CoA dehydrogenas 100.0 2.2E-61 4.7E-66 482.2 41.9 367 8-382 75-464 (774)
21 TIGR03204 pimC_large pimeloyl- 100.0 2.4E-60 5.2E-65 455.4 42.9 375 8-389 1-394 (395)
22 COG1960 CaiA Acyl-CoA dehydrog 100.0 2.7E-60 5.9E-65 456.6 40.9 382 7-391 1-390 (393)
23 cd01153 ACAD_fadE5 Putative ac 100.0 1.5E-59 3.2E-64 452.2 40.6 363 19-387 2-406 (407)
24 cd01152 ACAD_fadE6_17_26 Putat 100.0 4.8E-60 1E-64 452.3 36.1 367 13-389 1-380 (380)
25 PLN02876 acyl-CoA dehydrogenas 100.0 6.4E-59 1.4E-63 481.3 42.3 382 6-390 397-819 (822)
26 KOG0138|consensus 100.0 6.1E-59 1.3E-63 399.1 28.8 371 10-389 54-426 (432)
27 PTZ00456 acyl-CoA dehydrogenas 100.0 1E-57 2.2E-62 453.1 41.2 372 12-388 57-479 (622)
28 PLN02636 acyl-coenzyme A oxida 100.0 3.3E-58 7.2E-63 460.6 37.0 374 10-391 60-487 (686)
29 cd01163 DszC Dibenzothiophene 100.0 1.8E-57 3.9E-62 434.5 32.5 356 21-390 2-374 (377)
30 KOG0137|consensus 100.0 9.5E-58 2.1E-62 424.5 28.1 377 10-388 75-459 (634)
31 cd01154 AidB Proteins involved 100.0 1.5E-54 3.3E-59 417.7 39.2 348 31-388 45-417 (418)
32 PLN02312 acyl-CoA oxidase 100.0 9E-55 2E-59 434.9 37.3 347 38-391 101-489 (680)
33 cd01159 NcnH Naphthocyclinone 100.0 2.6E-54 5.6E-59 411.5 26.6 347 22-389 3-370 (370)
34 cd00567 ACAD Acyl-CoA dehydrog 100.0 2.6E-51 5.7E-56 385.1 37.3 325 14-385 2-327 (327)
35 PRK11561 isovaleryl CoA dehydr 100.0 2.1E-50 4.5E-55 392.4 37.6 331 44-389 86-441 (538)
36 PTZ00460 acyl-CoA dehydrogenas 100.0 5.3E-49 1.1E-53 391.9 31.8 302 88-391 88-433 (646)
37 cd01150 AXO Peroxisomal acyl-C 100.0 4.2E-49 9.1E-54 393.3 31.0 317 73-391 80-446 (610)
38 KOG1469|consensus 100.0 2.6E-50 5.7E-55 341.0 16.4 346 44-389 27-382 (392)
39 PTZ00457 acyl-CoA dehydrogenas 100.0 5.5E-47 1.2E-51 366.0 33.5 298 48-380 54-362 (520)
40 PLN02443 acyl-coenzyme A oxida 100.0 1.1E-45 2.3E-50 368.8 29.8 295 95-391 99-442 (664)
41 KOG0135|consensus 100.0 3.5E-34 7.5E-39 265.0 24.1 337 50-392 83-467 (661)
42 TIGR02309 HpaB-1 4-hydroxyphen 100.0 1.5E-26 3.3E-31 223.4 24.2 233 114-354 128-390 (477)
43 KOG0136|consensus 99.9 1.3E-24 2.9E-29 206.2 21.0 304 86-391 102-450 (670)
44 PF00441 Acyl-CoA_dh_1: Acyl-C 99.9 1.9E-23 4.1E-28 173.4 18.3 150 239-388 1-150 (150)
45 PF02771 Acyl-CoA_dh_N: Acyl-C 99.8 6.8E-19 1.5E-23 138.6 8.4 113 12-126 1-113 (113)
46 PF08028 Acyl-CoA_dh_2: Acyl-C 99.7 7.7E-16 1.7E-20 124.9 13.5 123 254-376 1-133 (134)
47 COG2368 Aromatic ring hydroxyl 99.7 1.7E-14 3.7E-19 134.3 20.4 235 114-354 132-398 (493)
48 TIGR02310 HpaB-2 4-hydroxyphen 99.6 4.8E-13 1E-17 129.3 24.2 232 113-350 136-398 (519)
49 PF02770 Acyl-CoA_dh_M: Acyl-C 99.6 4E-15 8.6E-20 98.8 6.9 51 130-180 1-51 (52)
50 PF11794 HpaB_N: 4-hydroxyphen 99.0 1.5E-09 3.2E-14 96.4 10.2 122 113-235 123-263 (264)
51 PF03241 HpaB: 4-hydroxyphenyl 96.8 0.038 8.2E-07 47.9 12.8 72 284-355 43-119 (205)
52 PTZ00457 acyl-CoA dehydrogenas 89.1 8.1 0.00018 38.6 12.8 79 281-360 429-508 (520)
53 PF14749 Acyl-CoA_ox_N: Acyl-c 88.1 0.6 1.3E-05 36.9 3.5 34 94-127 91-124 (125)
54 KOG0137|consensus 79.9 50 0.0011 33.1 13.0 74 281-355 533-607 (634)
55 PF01726 LexA_DNA_bind: LexA D 45.4 44 0.00095 22.9 4.0 52 9-60 2-57 (65)
56 PRK09463 fadE acyl-CoA dehydro 42.5 4.4E+02 0.0096 28.1 12.5 102 281-389 559-662 (777)
57 PF02084 Bindin: Bindin; Inte 30.7 2E+02 0.0043 25.1 6.4 67 38-125 96-163 (238)
No 1
>KOG0139|consensus
Probab=100.00 E-value=8.2e-80 Score=537.73 Aligned_cols=365 Identities=41% Similarity=0.675 Sum_probs=355.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhccCchhhhhcccCCCCchHHHHHHHHhcCCCCCCCCccCCCCCCCHHHHHHHHHHHHh
Q psy12318 7 TIYDLTEEQNKLRETVASYCKTHITPIAADIDSTNDFKDLRKVWKDFGQLGLLGITVPEEFGGSEMGYLDHVIAMEELSR 86 (392)
Q Consensus 7 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~p~~~GG~~~~~~~~~~~~~~la~ 86 (392)
+.-.|+++++.+.+.+|+|.++.+.|.+++.|++..+|. .+++.+.+.||+++.+|++|||.|.++.....++|+|++
T Consensus 33 pl~~l~E~e~~l~~tvrkfa~~~i~Plv~~mD~~~~~~~--~v~k~~fe~Glmgv~vpeeyGGsG~df~~~~~v~EEisk 110 (398)
T KOG0139|consen 33 PLQILSETEQMLQKTVRKFAQEEIKPLVREMDRESRYPA--SVIKGLFELGLMGVEVPEEYGGSGLDFFAAAIVIEEISK 110 (398)
T ss_pred chhhcCcHHHHHHHHHHHHHHHhcchHHHhhhhhccCCH--HHHHHHhhcCcceeecChhhCCCchhHHHHHHHHHHHhc
Confidence 345799999999999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred cCCcchhHHHhhhhhHHHHHHhcCCHHHHHHhhhHHhcCCeeEEEeecCCCCCCCcCCceeEEEEeCCeEEEeeeEeeee
Q psy12318 87 SSASVGLSFVAHSNLCVNQINRHATKQQKEKYLPALCSGEKIGCLAMSEPGSGSDVISMSLKAEKKGDMYVLNGNKFWIT 166 (392)
Q Consensus 87 ~~~s~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~te~~~gsd~~~~~~~a~~~~~g~~l~G~k~~vs 166 (392)
.|+|++.++.+|+++...+|..||+++||++|+|.+. |+.+++||+|||++|||.....|+|+++++.|+|||+|+|||
T Consensus 111 ~d~sv~~~v~v~ntL~~~~i~~fGteeqK~~~~P~~~-~d~vgsfAlSEpgaGSDa~A~~T~Ak~~Gd~~viNGsKmWIt 189 (398)
T KOG0139|consen 111 VDASVGVIVDVQNTLYLPLIIQFGTEEQKEKYLPKLT-GDLVGSFALSEPGAGSDAFALKTTAKKDGDDYVINGSKMWIT 189 (398)
T ss_pred cCccceeEEEecccccchHHHHhCcHHHHhhhcchhh-ccccceeeecCCCCCcchHHhhhhHhhcCCeEEEecceeeec
Confidence 9999999999999999999999999999998877765 888999999999999999999999999999999999999999
Q ss_pred CCCCCcEEEEEEEeCCCCCCCCCceEEEEEeCCCCCccccccccccCCCCCCcEEEEEcceeeCCCCcccCCCccHHHHH
Q psy12318 167 NGPDADIAVVYARTNPNADKKQHGISTFIVEKGTPGFSKGKKLNKLGMRGSNTGELIFENCQVPAENLLGGENKGAYVLM 246 (392)
Q Consensus 167 ~~~~ad~~lv~a~~~~~~~~~~~~~~~~lV~~~~~Gv~~~~~~~~~G~~~~~s~~v~f~~v~Vp~~~~l~~~~~g~~~~~ 246 (392)
|+.+|++++|++.+++.. +.+++++|+||++.||+++..+.+++|||++.++.++|+||+||.+++||+.++|+.|..
T Consensus 190 N~~~A~~~lVfan~d~~~--~~Kgit~fiV~rd~~Gl~~~k~eDKLGmRaSsTcql~fedVrVpks~IlGe~G~GykyAm 267 (398)
T KOG0139|consen 190 NAGEADWFLVFANADPSK--GYKGITCFIVPRDTPGLSLGKKEDKLGMRASSTCQLHFEDVRVPKSSILGEYGKGYKYAI 267 (398)
T ss_pred CCcccceEEEEEecChhh--ccCceeEEEeeCCCCCcccCCccccccccccceeeEEeccccccchhhcccCCcchHHHH
Confidence 999999999999987665 889999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChHHH
Q psy12318 247 SGLDLERLVISAGPVGIMQACCDFAFNYVHERVQFGTRIGEFQLMQGKIADMHVALSASRAYLYSVAKACDRGSINSKEC 326 (392)
Q Consensus 247 ~~~~~~r~~~~a~~~G~a~~al~~~~~~~~~r~~~g~~l~~~~~v~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (392)
..++.+|+.+++..+|+++.|+|.++.|+++|.+||++|.++|.+|++||++..++|++|.++|++++.-+.+.|...++
T Consensus 268 ~~Ln~gRIgi~AqmlglaQ~c~d~tI~Y~q~R~~FGk~l~d~Q~iQhqiA~~~teiEaaRlL~ynaAr~k~~G~pf~keA 347 (398)
T KOG0139|consen 268 EVLNAGRIGIGAQMLGLAQGCFDETIPYAQERLQFGKRLLDFQGLQHQIADMATEIEAARLLVYNAARMKDQGLPFVKEA 347 (398)
T ss_pred HhcCccceeehhhhhhhhHhHHHhhhHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcccCCChHHHHHHhhccCcccCChH
Q psy12318 327 AGVFLVAAENAVKVALEAIQCLGGNGYINDYPTGRYLRDAKLYEIGAGTS 376 (392)
Q Consensus 327 ~~~k~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~rd~~~~~~~~g~~ 376 (392)
+|+|+++++.+..+.+.|+|++||.||+++.|.+|+|||++...|++|++
T Consensus 348 AMAKl~ase~A~~~t~qCiq~lGG~Gyt~d~paek~yRDarI~~IyeGts 397 (398)
T KOG0139|consen 348 AMAKLYASEVATKTTHQCIQWLGGVGYTKDFPAEKFYRDARIGEIYEGTS 397 (398)
T ss_pred HHHHHhhhhhhhHHHHHHHHHHhcccccccccHHHHhhhceeeeeecCCC
Confidence 99999999999999999999999999999999999999999999999985
No 2
>KOG0141|consensus
Probab=100.00 E-value=2.4e-78 Score=520.20 Aligned_cols=390 Identities=65% Similarity=1.123 Sum_probs=381.1
Q ss_pred ccccCCCCCCCHHHHHHHHHHHHHHhhccCchhhhhcccCCCCchHHHHHHHHhcCCCCCCCCccCCCCCCCHHHHHHHH
Q psy12318 2 YKIDDTIYDLTEEQNKLRETVASYCKTHITPIAADIDSTNDFKDLRKVWKDFGQLGLLGITVPEEFGGSEMGYLDHVIAM 81 (392)
Q Consensus 2 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~p~~~GG~~~~~~~~~~~~ 81 (392)
|..++.+|.|++++..|++.+++|+++++.|++.++|+.+.|+.+++.|+.|.+.|+++++.|++|||.|+++.....++
T Consensus 32 ~~~~d~~~g~~~e~~~~r~sv~kF~qeelaP~a~eidk~n~~~~~r~~WkklG~~gllGita~~~~GG~G~~y~~h~ivm 111 (421)
T KOG0141|consen 32 YPVDDSMFGLSDEQDQLRESVRKFFQEELAPHASEIDKANEFKDLREFWKKLGKQGLLGITAPEEYGGSGGGYLSHCIVM 111 (421)
T ss_pred cccchhhcCCCHHHHHHHHHHHHHHHHhhcchhhhhhhcCCcchHHHHHHHhhhcCcccccchhhhCCCchhHHHHHHHH
Confidence 67788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCcchhHHHhhhhhHHHHHHhcCCHHHHHHhhhHHhcCCeeEEEeecCCCCCCCcCCceeEEEEeCCeEEEeee
Q psy12318 82 EELSRSSASVGLSFVAHSNLCVNQINRHATKQQKEKYLPALCSGEKIGCLAMSEPGSGSDVISMSLKAEKKGDMYVLNGN 161 (392)
Q Consensus 82 ~~la~~~~s~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~te~~~gsd~~~~~~~a~~~~~g~~l~G~ 161 (392)
||+++++.+.+..+..|++++...|.+.|+++|+++|+|.+.+|+-+++++||||++|||+.++.++|++++++|+|||+
T Consensus 112 EE~sra~g~v~lsygaHSnlcinqlvrnGseeQkekylPkl~sGe~iGalAMsEp~AGSDvv~mK~~Aek~g~~yiLNGs 191 (421)
T KOG0141|consen 112 EEISRASGGVALSYGAHSNLCINQLVRNGSEEQKEKYLPKLISGEHIGALAMSEPGAGSDVVSMKLKAEKKGDDYILNGS 191 (421)
T ss_pred HHHHhhcCCcccccccccchHHHHHHhcCCHHHHHhhhhhhhcccccceeeecCCCCCCccceeeeeceecCCcEEecCc
Confidence 99999998999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeeeCCCCCcEEEEEEEeCCCCCCCCCceEEEEEeCCCCCccccccccccCCCCCCcEEEEEcceeeCCCCcccCCCcc
Q psy12318 162 KFWITNGPDADIAVVYARTNPNADKKQHGISTFIVEKGTPGFSKGKKLNKLGMRGSNTGELIFENCQVPAENLLGGENKG 241 (392)
Q Consensus 162 k~~vs~~~~ad~~lv~a~~~~~~~~~~~~~~~~lV~~~~~Gv~~~~~~~~~G~~~~~s~~v~f~~v~Vp~~~~l~~~~~g 241 (392)
|.||||++.||.++|.|+++....++..|+++|+|+...||++..+..+++|||+++++++.|+|++||+++++|.+++|
T Consensus 192 K~witNG~~advliVyAkTd~~a~~~~hGIt~FiVEkgm~GFs~~~KLdKlGmrgsdTcELvFed~~vpas~ilg~enkG 271 (421)
T KOG0141|consen 192 KFWITNGPDADVLIVYAKTDHSAVPPSHGITAFIVEKGMPGFSTAQKLDKLGMRGSDTCELVFEDCKVPASNILGEENKG 271 (421)
T ss_pred EEEEecCCCCcEEEEEEecCCCCCCCcCceEEEEEcCCCcccccchhhHhhcCCCCcchheehhhccCcHHHhcCcCCce
Confidence 99999999999999999998876668899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Q psy12318 242 AYVLMSGLDLERLVISAGPVGIMQACCDFAFNYVHERVQFGTRIGEFQLMQGKIADMHVALSASRAYLYSVAKACDRGSI 321 (392)
Q Consensus 242 ~~~~~~~~~~~r~~~~a~~~G~a~~al~~~~~~~~~r~~~g~~l~~~~~v~~~la~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (392)
+.+++..++..|+.+++..+|+++.++|.+..|+++|++||++++.||.+|.++|+|+..+.+.|++++.+++..|++.-
T Consensus 272 vYvlMsgLd~ERLvla~gplglmqa~~d~~~~Y~~qR~afgk~ig~fQ~~QgklAdmyT~l~a~Rsyvy~va~~~d~g~~ 351 (421)
T KOG0141|consen 272 VYVLMSGLDLERLVLAAGPLGLMQAALDETFPYAHQRKAFGKKIGHFQLLQGKLADMYTTLCASRSYVYNVARACDAGNV 351 (421)
T ss_pred EEEEecCCChhHhhhccCchHHHHHHHHHhhhHHHHHHHhCCchhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCChHHHHHHhhccCcccCChHHHHHHHHHHHHhhhc
Q psy12318 322 NSKECAGVFLVAAENAVKVALEAIQCLGGNGYINDYPTGRYLRDAKLYEIGAGTSEVRRIVIGRSINAEY 391 (392)
Q Consensus 322 ~~~~~~~~k~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~rd~~~~~~~~g~~~~~~~~l~~~~l~~~ 391 (392)
...+++.+++|+++.+..++-+++|++||-||++++|..|++||++...|..||+++.+..|+|.+..+|
T Consensus 352 ~~kdcag~il~aaE~~tqVald~iQ~~GGnGYineyp~gr~lrDAklyeIgaGTsEirr~lIgRel~~e~ 421 (421)
T KOG0141|consen 352 DPKDCAGVILYAAEKATQVALDAIQCLGGNGYINEYPTGRLLRDAKLYEIGAGTSEIRRLLIGRELNKEY 421 (421)
T ss_pred ChhhhhhhhhhHhhhhHHHHHHHHhhccCcccccccchhhhhhhceeeeccCChHHHHHHHHHHHhhccC
Confidence 8899999999999999999999999999999999999999999999999999999999999999998764
No 3
>KOG0140|consensus
Probab=100.00 E-value=1.1e-76 Score=509.63 Aligned_cols=382 Identities=36% Similarity=0.602 Sum_probs=373.4
Q ss_pred CCCCCHHHHHHHHHHHHHHhhccCchhhhhcccCCCCchHHHHHHHHhcCCCCCCCCccCCCCCCCHHHHHHHHHHHHhc
Q psy12318 8 IYDLTEEQNKLRETVASYCKTHITPIAADIDSTNDFKDLRKVWKDFGQLGLLGITVPEEFGGSEMGYLDHVIAMEELSRS 87 (392)
Q Consensus 8 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~p~~~GG~~~~~~~~~~~~~~la~~ 87 (392)
.|.|+++|.++++.+++|.++++.|...++|+.+.||. ++++...+.|+....+|++|||.|++..+...+.|+|+++
T Consensus 25 sf~L~e~qke~q~~A~kFa~~e~~P~aae~Dk~ge~P~--~iirkA~~lG~~~~~ip~~~GG~Gls~l~t~lI~E~LayG 102 (408)
T KOG0140|consen 25 SFGLTEDQKEFQEAARKFAKDEMIPNAAEYDKSGEFPW--EIIRKAHELGFMNTYIPEDYGGLGLSRLDTCLIFEALAYG 102 (408)
T ss_pred ccCcchHHHHHHHHHHHHHHHhhccchhhhcccCCCcH--HHHHHHHHcccCcccCccccCCCCchhHHHHHHHHHHHcc
Confidence 59999999999999999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred CCcchhHHHhhhhhHHHHHHhcCCHHHHHHhhhHHhcCCeeEEEeecCCCCCCCcCCceeEEEEeCCeEEEeeeEeeeeC
Q psy12318 88 SASVGLSFVAHSNLCVNQINRHATKQQKEKYLPALCSGEKIGCLAMSEPGSGSDVISMSLKAEKKGDMYVLNGNKFWITN 167 (392)
Q Consensus 88 ~~s~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~te~~~gsd~~~~~~~a~~~~~g~~l~G~k~~vs~ 167 (392)
|.++...+..|+ ++.++|-.+|+++||++||+++.....+++.++|||++|||+.++.|++++.+|.|+|||+|.||||
T Consensus 103 Ctg~~~~I~~~~-l~~~pi~~~gneeqKkk~lg~l~~~p~~asYcvTEPgAGSDvagikTka~KkGDeYiiNGsKawItg 181 (408)
T KOG0140|consen 103 CTGIQTAISIHN-LAAWPIILSGNEEQKKKYLGRLAEEPKVASYCVTEPGAGSDVAGIKTKAEKKGDEYIINGSKAWITG 181 (408)
T ss_pred chhHHHHHhccc-hhhhhehhcCcHHHHHhhhhhhhcchhhhhhhccCCCCCcchhhhhhhhhhcCCEEEEcCceeeeec
Confidence 999999999998 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcEEEEEEEeCCCCC-CCCCceEEEEEeCCCCCccccccccccCCCCCCcEEEEEcceeeCCCCcccCCCccHHHHH
Q psy12318 168 GPDADIAVVYARTNPNAD-KKQHGISTFIVEKGTPGFSKGKKLNKLGMRGSNTGELIFENCQVPAENLLGGENKGAYVLM 246 (392)
Q Consensus 168 ~~~ad~~lv~a~~~~~~~-~~~~~~~~~lV~~~~~Gv~~~~~~~~~G~~~~~s~~v~f~~v~Vp~~~~l~~~~~g~~~~~ 246 (392)
+.+|+|++|++|++++.. |..+++..|+|+.+.||++.......||+|.+++..|.|+||+||.+|+||.++.|+...+
T Consensus 182 ~G~anwyfVlaRtd~~pk~p~~Kaft~fiVe~dTpGlt~GkKE~nmGqr~sdTR~itFEDvrVP~~Nvlg~~G~GFkvAm 261 (408)
T KOG0140|consen 182 AGHANWYFVLARTDPDPKTPAGKAFTAFIVEGDTPGLTRGKKEKNMGQRCSDTRGITFEDVRVPKENVLGAPGAGFKVAM 261 (408)
T ss_pred CCccceEEEEEecCCCCCCCCCcceEEEEEeCCCCCcCcChhhhcccccCCCCceeeeeecccchhccccCCCccceehh
Confidence 999999999999987532 5788999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChHHH
Q psy12318 247 SGLDLERLVISAGPVGIMQACCDFAFNYVHERVQFGTRIGEFQLMQGKIADMHVALSASRAYLYSVAKACDRGSINSKEC 326 (392)
Q Consensus 247 ~~~~~~r~~~~a~~~G~a~~al~~~~~~~~~r~~~g~~l~~~~~v~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (392)
..++..|..+++.++|++.++++.+.+|+.+|++||+||+++|.+|..||+|...++.+|.+++.+++++|++.+..-.+
T Consensus 262 ~~fd~tRp~vAa~alG~A~r~ld~a~ky~~eRK~FG~~iA~hQ~vqF~LAdMA~~le~aRL~~~~aa~evd~~r~~sy~a 341 (408)
T KOG0140|consen 262 GGFDKTRPNVAAGALGLAQRCLDEATKYALERKAFGTPIANHQAVQFMLADMAINLELARLMTRNAAWEVDNGRRNSYYA 341 (408)
T ss_pred hhccCCCCchhhhhhHHHHHHHHHHHHHHHHHHHhCcChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcccCCChHHHHHHhhccCcccCChHHHHHHHHHHHHhhhcC
Q psy12318 327 AGVFLVAAENAVKVALEAIQCLGGNGYINDYPTGRYLRDAKLYEIGAGTSEVRRIVIGRSINAEYK 392 (392)
Q Consensus 327 ~~~k~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~rd~~~~~~~~g~~~~~~~~l~~~~l~~~~ 392 (392)
+++|.++++.+..++..++|++||.||..++|.+++.||++.+.|++|++++++..|+|.+|.+|+
T Consensus 342 SiAK~fA~D~an~~at~AvQifGG~Gfn~eYpVeklmRDaki~QIyEGTsqiqRlvIsR~ll~~~~ 407 (408)
T KOG0140|consen 342 SIAKLFATDTANQAATNAVQIFGGNGFNKEYPVEKLMRDAKIYQIYEGTSQIQRLVISRSLLQKFA 407 (408)
T ss_pred HHHHHHhhhhHHHHHHHHHHhhccCCccccccHHHHHhhhhhhHhhhchHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999999999999874
No 4
>PLN02519 isovaleryl-CoA dehydrogenase
Probab=100.00 E-value=3.6e-68 Score=511.58 Aligned_cols=388 Identities=60% Similarity=1.004 Sum_probs=363.8
Q ss_pred CccccCCCCCCCHHHHHHHHHHHHHHhhccCchhhhhcccCCCCchHHHHHHHHhcCCCCCCCCccCCCCCCCHHHHHHH
Q psy12318 1 TYKIDDTIYDLTEEQNKLRETVASYCKTHITPIAADIDSTNDFKDLRKVWKDFGQLGLLGITVPEEFGGSEMGYLDHVIA 80 (392)
Q Consensus 1 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~p~~~GG~~~~~~~~~~~ 80 (392)
+|+...++|.+++++.++++.+++|+.+++.+...+.|+++.+|.-.++|+.|++.||+++.+|++|||.++++.+...+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~~~p~~~~~~~~l~~~G~~~~~vP~e~GG~g~~~~~~~~v 95 (404)
T PLN02519 16 RFSSSSSSLLFDDTQLQFKESVQQFAQENIAPHAAAIDATNSFPKDVNLWKLMGDFNLHGITAPEEYGGLGLGYLYHCIA 95 (404)
T ss_pred hccccCCCCCCCHHHHHHHHHHHHHHHHhCCcchHHHHhcCCCCchHHHHHHHHHCCCCcccCChhhCCCCCCHHHHHHH
Confidence 47888999999999999999999999999999888888888888711379999999999999999999999999999999
Q ss_pred HHHHHhcCCcchhHHHhhhhhHHHHHHhcCCHHHHHHhhhHHhcCCeeEEEeecCCCCCCCcCCceeEEEEeCCeEEEee
Q psy12318 81 MEELSRSSASVGLSFVAHSNLCVNQINRHATKQQKEKYLPALCSGEKIGCLAMSEPGSGSDVISMSLKAEKKGDMYVLNG 160 (392)
Q Consensus 81 ~~~la~~~~s~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~te~~~gsd~~~~~~~a~~~~~g~~l~G 160 (392)
++++++.|+++++.+.+|.......+..+++++|+++|+|++.+|+.++|+++|||++|+|...+.+++++++|||+|||
T Consensus 96 ~e~la~~~~s~a~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~sEp~~gsd~~~~~t~a~~~~~g~~lnG 175 (404)
T PLN02519 96 MEEISRASGSVGLSYGAHSNLCINQLVRNGTPAQKEKYLPKLISGEHVGALAMSEPNSGSDVVSMKCKAERVDGGYVLNG 175 (404)
T ss_pred HHHHhhhcccHHHHHHhhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCcCCCcccceEEEEEeCCEEEEEe
Confidence 99999999999998888865566788999999999999999999999999999999999999999999999999999999
Q ss_pred eEeeeeCCCCCcEEEEEEEeCCCCCCCCCceEEEEEeCCCCCccccccccccCCCCCCcEEEEEcceeeCCCCcccCCCc
Q psy12318 161 NKFWITNGPDADIAVVYARTNPNADKKQHGISTFIVEKGTPGFSKGKKLNKLGMRGSNTGELIFENCQVPAENLLGGENK 240 (392)
Q Consensus 161 ~k~~vs~~~~ad~~lv~a~~~~~~~~~~~~~~~~lV~~~~~Gv~~~~~~~~~G~~~~~s~~v~f~~v~Vp~~~~l~~~~~ 240 (392)
+|.|+||+.++|+++|.+++++++ +..++++|+||.+.|||++.++|+++|+++++++++.|+||+||++++++.++.
T Consensus 176 ~K~~vs~a~~ad~~~v~a~~~~~~--~~~~~~~~lVp~~~~Gv~~~~~~~~~G~rgt~s~~v~f~~v~Vp~~~~lg~~~~ 253 (404)
T PLN02519 176 NKMWCTNGPVAQTLVVYAKTDVAA--GSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPEENVLGQEGK 253 (404)
T ss_pred EEEeecCCCcCCEEEEEEEeCCCC--CCCeeEEEEEeCCCCCeeccCcccccCCCCCCeeEEEeCeEEecHHHcCCCCCc
Confidence 999999999999999999976533 456789999999999999999999999999999999999999999999999888
Q ss_pred cHHHHHHhhcHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Q psy12318 241 GAYVLMSGLDLERLVISAGPVGIMQACCDFAFNYVHERVQFGTRIGEFQLMQGKIADMHVALSASRAYLYSVAKACDRGS 320 (392)
Q Consensus 241 g~~~~~~~~~~~r~~~~a~~~G~a~~al~~~~~~~~~r~~~g~~l~~~~~v~~~la~~~~~~~~~~~~~~~~~~~~~~~~ 320 (392)
|+......++..|+.+++.++|+++++++.+++|+++|.+||+|+.++|.+|++++++.+++++++++++.+++.++.+.
T Consensus 254 G~~~~~~~~~~~r~~~aa~~lG~a~~al~~a~~~a~~R~~~g~pl~~~~~v~~~la~~~~~l~aar~~~~~aa~~~~~~~ 333 (404)
T PLN02519 254 GVYVMMSGLDLERLVLAAGPLGLMQACLDVVLPYVRQREQFGRPIGEFQFIQGKLADMYTSLQSSRSYVYSVARDCDNGK 333 (404)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhceeCCccHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 98877888899999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCChHHHHHHhhccCcccCChHHHHHHHHHHHHhhh
Q psy12318 321 INSKECAGVFLVAAENAVKVALEAIQCLGGNGYINDYPTGRYLRDAKLYEIGAGTSEVRRIVIGRSINAE 390 (392)
Q Consensus 321 ~~~~~~~~~k~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~rd~~~~~~~~g~~~~~~~~l~~~~l~~ 390 (392)
.....+..+|+++++.+.+++..+++++||.||.++++++|+|||++...+++|++++++..|++.++++
T Consensus 334 ~~~~~~~~ak~~~~~~a~~~~~~a~~i~Gg~g~~~~~~l~r~~RD~~~~~~~~G~~e~~~~~i~~~~~~~ 403 (404)
T PLN02519 334 VDRKDCAGVILCAAERATQVALQAIQCLGGNGYINEYPTGRLLRDAKLYEIGAGTSEIRRMLIGRELFKE 403 (404)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceecCCChHHHHHHhhhcceeeCCHHHHHHHHHHHHHhhc
Confidence 5567788999999999999999999999999999999999999999999999999999999999999875
No 5
>PRK03354 crotonobetainyl-CoA dehydrogenase; Validated
Probab=100.00 E-value=2.9e-67 Score=501.84 Aligned_cols=379 Identities=27% Similarity=0.450 Sum_probs=350.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhcc-CchhhhhcccCCCCchHHHHHHHHhcCCCCCCCCccCCCCCCCHHHHHHHHHHHH
Q psy12318 7 TIYDLTEEQNKLRETVASYCKTHI-TPIAADIDSTNDFKDLRKVWKDFGQLGLLGITVPEEFGGSEMGYLDHVIAMEELS 85 (392)
Q Consensus 7 ~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~p~~~GG~~~~~~~~~~~~~~la 85 (392)
|+|.||++++++++.+|+|+.+++ .+...+.|+...||. ++|+.|++.||+++.+|++|||.|+++.++..++++++
T Consensus 1 m~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~d~~~~~p~--~~~~~l~~~Gl~~~~vP~~~GG~g~~~~~~~~~~~~la 78 (380)
T PRK03354 1 MDFNLNDEQELFVAGIRELMASENWEAYFAECDRDSVYPE--RFVKALADMGIDSLLIPEEHGGLDAGFVTLAAVWMELG 78 (380)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhccCChhHHHHHhhCCCCH--HHHHHHHHCCCCccCCChhhCCCCCCHHHHHHHHHHHH
Confidence 468999999999999999999886 456667788888999 99999999999999999999999999999999999999
Q ss_pred hcCCcchhHHHhhhhhHHHHHHhcCCHHHHHHhhhHHhcCCeeEEEeecCCCCCCCcCCceeEEEEeCCeEEEeeeEeee
Q psy12318 86 RSSASVGLSFVAHSNLCVNQINRHATKQQKEKYLPALCSGEKIGCLAMSEPGSGSDVISMSLKAEKKGDMYVLNGNKFWI 165 (392)
Q Consensus 86 ~~~~s~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~te~~~gsd~~~~~~~a~~~~~g~~l~G~k~~v 165 (392)
++|+++++.+.++. ....+..+++++|+++|++++.+|+.++++++|||+.|||...+.|+++++++||+|||+|.|+
T Consensus 79 ~~~~s~~~~~~~~~--~~~~l~~~g~~e~~~~~l~~~~~g~~~~~~a~tE~~~gs~~~~~~t~a~~~~~g~~lnG~K~fi 156 (380)
T PRK03354 79 RLGAPTYVLYQLPG--GFNTFLREGTQEQIDKIMAFRGTGKQMWNSAITEPGAGSDVGSLKTTYTRRNGKVYLNGSKCFI 156 (380)
T ss_pred hcCcchHHHHHhcc--cHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCchhhCEEEEEEeCCEEEEeeEEEEE
Confidence 99999887766553 2457888999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCcEEEEEEEeCCCCCCCCCceEEEEEeCCCCCccccccccccCCCCCCcEEEEEcceeeCCCCcccCCCccHHHH
Q psy12318 166 TNGPDADIAVVYARTNPNADKKQHGISTFIVEKGTPGFSKGKKLNKLGMRGSNTGELIFENCQVPAENLLGGENKGAYVL 245 (392)
Q Consensus 166 s~~~~ad~~lv~a~~~~~~~~~~~~~~~~lV~~~~~Gv~~~~~~~~~G~~~~~s~~v~f~~v~Vp~~~~l~~~~~g~~~~ 245 (392)
|++.+|||++|.++++++. +..++++|+||.+.|||++. +|+++||+++++++|.|+||+||++++++.+++|+...
T Consensus 157 s~~~~ad~~~v~a~~~~~~--~~~~~~~~lv~~~~~gv~~~-~~~~~G~r~~~~~~v~f~~v~Vp~~~~lg~~g~g~~~~ 233 (380)
T PRK03354 157 TSSAYTPYIVVMARDGASP--DKPVYTEWFVDMSKPGIKVT-KLEKLGLRMDSCCEITFDDVELDEKDMFGREGNGFNRV 233 (380)
T ss_pred cCCCcCCEEEEEEEcCCCC--CCCceeEEEEECCCCceEec-cccccCCCCCCeEEEEEccEEecHHHcCCCCChHHHHH
Confidence 9999999999999974322 34567889999999999985 79999999999999999999999999999988888776
Q ss_pred HHhhcHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChHH
Q psy12318 246 MSGLDLERLVISAGPVGIMQACCDFAFNYVHERVQFGTRIGEFQLMQGKIADMHVALSASRAYLYSVAKACDRGSINSKE 325 (392)
Q Consensus 246 ~~~~~~~r~~~~a~~~G~a~~al~~~~~~~~~r~~~g~~l~~~~~v~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (392)
...+...|+.+++.++|+++++++.+++|+++|++||+|+.++|.+|++|+++...+++++++++.+++..+++......
T Consensus 234 ~~~~~~~r~~~aa~~~G~a~~al~~a~~~a~~R~~fg~~i~~~q~vq~~la~~~~~~~aar~l~~~aa~~~~~~~~~~~~ 313 (380)
T PRK03354 234 KEEFDHERFLVALTNYGTAMCAFEDAARYANQRVQFGEAIGRFQLIQEKFAHMAIKLNSMKNMLYEAAWKADNGTITSGD 313 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCccHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhH
Confidence 67778899999999999999999999999999999999999999999999999999999999999999998877656678
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcccCCChHHHHHHhhccCcccCChHHHHHHHHHHHHhhhcC
Q psy12318 326 CAGVFLVAAENAVKVALEAIQCLGGNGYINDYPTGRYLRDAKLYEIGAGTSEVRRIVIGRSINAEYK 392 (392)
Q Consensus 326 ~~~~k~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~rd~~~~~~~~g~~~~~~~~l~~~~l~~~~ 392 (392)
.+++|+++++.+.++++.+++++||.||.++++++|+|||++...+++|++++++..++|.+++.|+
T Consensus 314 ~~~aK~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~G~~~~~~~~i~~~~~~~~~ 380 (380)
T PRK03354 314 AAMCKYFCANAAFEVVDSAMQVLGGVGIAGNHRISRFWRDLRVDRVSGGSDEMQILTLGRAVLKQYR 380 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCceecCCChHHHHHHHhhhhhccCCHHHHHHHHHHHHHHhhcC
Confidence 8999999999999999999999999999999999999999999999999999999999999998885
No 6
>cd01151 GCD Glutaryl-CoA dehydrogenase. Glutaryl-CoA dehydrogenase (GCD). GCD is an acyl-CoA dehydrogenase, which catalyzes the oxidative decarboxylation of glutaryl-CoA to crotonyl-CoA and carbon dioxide in the catabolism of lysine, hydroxylysine, and tryptophan. It uses electron transfer flavoprotein (ETF) as an electron acceptor. GCD is a homotetramer. GCD deficiency leads to a severe neurological disorder in humans.
Probab=100.00 E-value=4.8e-67 Score=501.60 Aligned_cols=375 Identities=33% Similarity=0.524 Sum_probs=352.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhhccCchhhhhcccCCCCchHHHHHHHHhcCCCCCCCCccCCCCCCCHHHHHHHHHHHH
Q psy12318 6 DTIYDLTEEQNKLRETVASYCKTHITPIAADIDSTNDFKDLRKVWKDFGQLGLLGITVPEEFGGSEMGYLDHVIAMEELS 85 (392)
Q Consensus 6 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~p~~~GG~~~~~~~~~~~~~~la 85 (392)
+++|.++++++++++.+++|+++.+.+...+.++...+|. ++|+.|.+.||+++ +|++|||.|+++.+...++++|+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~~l~~~Gl~~~-vP~~~GG~g~~~~~~~~v~e~l~ 84 (386)
T cd01151 8 NLDDLLTEEERAIRDTAREFCQEELAPRVLEAYREEKFDR--KIIEEMGELGLLGA-TIKGYGCAGLSSVAYGLIAREVE 84 (386)
T ss_pred ccccCCCHHHHHHHHHHHHHHHHhcCccHHHHHHhCCCCH--HHHHHHHHCCCCcc-CccccCCCCCCHHHHHHHHHHHH
Confidence 4678899999999999999999999998777777778999 99999999999999 99999999999999999999999
Q ss_pred hcCCcchhHHHhhhhhHHHHHHhcCCHHHHHHhhhHHhcCCeeEEEeecCCCCCCCcCCceeEEEEeCCeEEEeeeEeee
Q psy12318 86 RSSASVGLSFVAHSNLCVNQINRHATKQQKEKYLPALCSGEKIGCLAMSEPGSGSDVISMSLKAEKKGDMYVLNGNKFWI 165 (392)
Q Consensus 86 ~~~~s~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~te~~~gsd~~~~~~~a~~~~~g~~l~G~k~~v 165 (392)
+.|+++++.+.+|..++...+..+++++|+++|++++.+|+.++++++|||++|||+.++.++++++++||+|||+|.|+
T Consensus 85 ~~~~s~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~i 164 (386)
T cd01151 85 RVDSGYRSFMSVQSSLVMLPIYDFGSEEQKQKYLPKLASGELIGCFGLTEPNHGSDPGGMETRARKDGGGYKLNGSKTWI 164 (386)
T ss_pred hhChhHHHHHHHHHhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCChhhCeEEEEEECCEEEEEEEEEee
Confidence 99999888887776466667889999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCcEEEEEEEeCCCCCCCCCceEEEEEeCCCCCccccccccccCCCCCCcEEEEEcceeeCCCCcccCCCccHHHH
Q psy12318 166 TNGPDADIAVVYARTNPNADKKQHGISTFIVEKGTPGFSKGKKLNKLGMRGSNTGELIFENCQVPAENLLGGENKGAYVL 245 (392)
Q Consensus 166 s~~~~ad~~lv~a~~~~~~~~~~~~~~~~lV~~~~~Gv~~~~~~~~~G~~~~~s~~v~f~~v~Vp~~~~l~~~~~g~~~~ 245 (392)
||+..||+++|.++++++ .++.+|+||++.|||++.+.|+++|+++++++.+.|+||+||++++++. +.|+...
T Consensus 165 s~~~~Ad~~lv~ar~~~~-----~~~~~flVp~~~~gv~i~~~~~~~G~~g~~s~~v~f~~v~Vp~~~~l~~-~~g~~~~ 238 (386)
T cd01151 165 TNSPIADVFVVWARNDET-----GKIRGFILERGMKGLSAPKIQGKFSLRASITGEIVMDNVFVPEENLLPG-AEGLRGP 238 (386)
T ss_pred cCCCcCCEEEEEEEECCC-----CcEEEEEEcCCCCCeecCCCCCCcCCCCCceeEEEEccEEeCHHHcCCc-cccHHHH
Confidence 999999999999997542 3578899999999999999999999999999999999999999999986 4677777
Q ss_pred HHhhcHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChHH
Q psy12318 246 MSGLDLERLVISAGPVGIMQACCDFAFNYVHERVQFGTRIGEFQLMQGKIADMHVALSASRAYLYSVAKACDRGSINSKE 325 (392)
Q Consensus 246 ~~~~~~~r~~~~a~~~G~a~~al~~~~~~~~~r~~~g~~l~~~~~v~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (392)
...+...|+.+++.++|+++++++.+++|+++|.+||+|+.++|.+|++|+++.+++++++++++.+++..+.+.+....
T Consensus 239 ~~~~~~~r~~~aa~~lG~a~~al~~a~~~a~~R~~~g~~i~~~q~vq~~la~~~~~~eaar~l~~~a~~~~d~~~~~~~~ 318 (386)
T cd01151 239 FKCLNNARYGIAWGALGAAEDCYHTARQYVLDRKQFGRPLAAFQLVQKKLADMLTEIALGLLACLRVGRLKDQGKATPEQ 318 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeecCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHH
Confidence 78888999999999999999999999999999999999999999999999999999999999999999999887656678
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcccCCChHHHHHHhhccCcccCChHHHHHHHHHHHHhh
Q psy12318 326 CAGVFLVAAENAVKVALEAIQCLGGNGYINDYPTGRYLRDAKLYEIGAGTSEVRRIVIGRSINA 389 (392)
Q Consensus 326 ~~~~k~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~rd~~~~~~~~g~~~~~~~~l~~~~l~ 389 (392)
.+++|.++++.+.++++.++|++||.||.+++|++|+|||++...+++|++++++..|++.+++
T Consensus 319 ~~~~K~~~~~~a~~~~~~a~~~~Gg~g~~~~~~l~r~~RD~~~~~~~~G~~~~~~~~i~~~~l~ 382 (386)
T cd01151 319 ISLLKRNNCGKALEIARTAREMLGGNGISDEYHIIRHMVNLESVNTYEGTHDIHALILGRAITG 382 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCccCCCCHHHHHHHhhhcceecCCHHHHHHHHHHHHHhc
Confidence 8999999999999999999999999999999999999999999999999999999999999886
No 7
>PRK12341 putative acyl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=5.5e-67 Score=500.34 Aligned_cols=378 Identities=29% Similarity=0.470 Sum_probs=349.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhccC-chhhhhcccCCCCchHHHHHHHHhcCCCCCCCCccCCCCCCCHHHHHHHHHHHH
Q psy12318 7 TIYDLTEEQNKLRETVASYCKTHIT-PIAADIDSTNDFKDLRKVWKDFGQLGLLGITVPEEFGGSEMGYLDHVIAMEELS 85 (392)
Q Consensus 7 ~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~p~~~GG~~~~~~~~~~~~~~la 85 (392)
|+|.++++++.+++.+++|+.+.+. +...+.|+.+.||. ++|+.|+++||+++.+|++|||.|.++.++..++++++
T Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~p~--~~~~~l~~~Gl~~~~vP~~~GG~g~~~~~~~~~~e~la 78 (381)
T PRK12341 1 MDFSLTEEQELLLASIRELITRNFPEEYFRTCDENGTYPR--EFMRALADNGISMLGVPEEFGGTPADYVTQMLVLEEVS 78 (381)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhcCchhHHHHHHhCCCCH--HHHHHHHHCCCCCcCCChhhCCCCcCHHHHHHHHHHHh
Confidence 5789999999999999999998886 46677788889999 99999999999999999999999999999999999999
Q ss_pred hcCCcchhHHHhhhhhHHHHHHhcCCHHHHHHhhhHH-hcCCeeEEEeecCCCCCCCcCCceeEEEEeCCeEEEeeeEee
Q psy12318 86 RSSASVGLSFVAHSNLCVNQINRHATKQQKEKYLPAL-CSGEKIGCLAMSEPGSGSDVISMSLKAEKKGDMYVLNGNKFW 164 (392)
Q Consensus 86 ~~~~s~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~-~~g~~~~~~a~te~~~gsd~~~~~~~a~~~~~g~~l~G~k~~ 164 (392)
+.|.+ ++++ .+. ++...+..+|+++||++|++++ .+|+.++++++|||++|||...+.++++++++||+|||+|.|
T Consensus 79 ~~~~~-~~~~-~~~-~~~~~l~~~g~~~q~~~~l~~~~~~g~~~~~~a~tEp~~gsd~~~~~t~a~~~~gg~~lnG~K~~ 155 (381)
T PRK12341 79 KCGAP-AFLI-TNG-QCIHSMRRFGSAEQLRKTAESTLETGDPAYALALTEPGAGSDNNSATTTYTRKNGKVYLNGQKTF 155 (381)
T ss_pred hcChh-HHHH-hhh-hhHHHHHHhCCHHHHHHHhHHHhhCCCeEEEEEecCCCCCCchhhCeeEEEEeCCEEEEEeEEEE
Confidence 99988 4443 232 4556788899999999999999 499989999999999999999999999999999999999999
Q ss_pred eeCCCCCcEEEEEEEeCCCCCCCCCceEEEEEeCCCCCccccccccccCCCCCCcEEEEEcceeeCCCCcccCCCccHHH
Q psy12318 165 ITNGPDADIAVVYARTNPNADKKQHGISTFIVEKGTPGFSKGKKLNKLGMRGSNTGELIFENCQVPAENLLGGENKGAYV 244 (392)
Q Consensus 165 vs~~~~ad~~lv~a~~~~~~~~~~~~~~~~lV~~~~~Gv~~~~~~~~~G~~~~~s~~v~f~~v~Vp~~~~l~~~~~g~~~ 244 (392)
+||+.+||+++|.++++++.+ +..++++|+||.+.|||++ .+|+++|+++++++.|+|+||+||++++++.+++|+..
T Consensus 156 is~~~~Ad~~~v~a~~~~~~~-~~~~~~~~lV~~~~~gv~~-~~~~~~G~~~~~~~~v~~~~v~Vp~~~~lg~~~~g~~~ 233 (381)
T PRK12341 156 ITGAKEYPYMLVLARDPQPKD-PKKAFTLWWVDSSKPGIKI-NPLHKIGWHMLSTCEVYLDNVEVEESDLVGEEGMGFLN 233 (381)
T ss_pred EcCCccCCEEEEEEEcCCCCC-CCCceEEEEEeCCCCceee-cccccccCCCCCceEEEECcEEecHHHcCCCCChHHHH
Confidence 999999999999999754321 3357899999999999998 57999999999999999999999999999999999888
Q ss_pred HHHhhcHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChH
Q psy12318 245 LMSGLDLERLVISAGPVGIMQACCDFAFNYVHERVQFGTRIGEFQLMQGKIADMHVALSASRAYLYSVAKACDRGSINSK 324 (392)
Q Consensus 245 ~~~~~~~~r~~~~a~~~G~a~~al~~~~~~~~~r~~~g~~l~~~~~v~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (392)
....++..|+.++++++|+++++++.+++|+++|++||+|+.++|.+|++|+++..++++++++++.+++..+++.+...
T Consensus 234 ~~~~~~~~r~~~aa~~lG~a~~al~~~~~~~~~R~~~g~~i~~~~~v~~~la~~~~~~~aar~~~~~a~~~~d~~~~~~~ 313 (381)
T PRK12341 234 VMYNFEMERLINAARSLGFAECAFEDAARYANQRIQFGKPIGHNQLIQEKLTLMAIKIENMRNMVYKVAWQADNGQSLRT 313 (381)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCccHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchH
Confidence 77888999999999999999999999999999999999999999999999999999999999999999999988766667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCChHHHHHHhhccCcccCChHHHHHHHHHHHHhhhc
Q psy12318 325 ECAGVFLVAAENAVKVALEAIQCLGGNGYINDYPTGRYLRDAKLYEIGAGTSEVRRIVIGRSINAEY 391 (392)
Q Consensus 325 ~~~~~k~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~rd~~~~~~~~g~~~~~~~~l~~~~l~~~ 391 (392)
.++++|+++++.+.++++.+++++||.||.+++|++|+|||++...+++|++++++..|++.+++.|
T Consensus 314 ~~~~aK~~~~~~a~~v~~~~~~~~Gg~g~~~~~~l~r~~RD~~~~~~~~g~~~~~~~~i~~~~~~~~ 380 (381)
T PRK12341 314 SAALAKLYCARTAMEVIDDAIQIMGGLGYTDEARVSRFWRDVRCERIGGGTDEIMIYIAGRQILKDY 380 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCHHHHHHHHhhcceecCCHHHHHHHHHHHHHHhhc
Confidence 8899999999999999999999999999999999999999999999999999999999999998754
No 8
>cd01162 IBD Isobutyryl-CoA dehydrogenase. Isobutyryl-CoA dehydrogenase (IBD) catalyzes the alpha, beta- dehydrogenation of short branched chain acyl-CoA intermediates in valine catabolism. It is predicted to be a homotetramer.
Probab=100.00 E-value=2.8e-66 Score=494.72 Aligned_cols=374 Identities=40% Similarity=0.650 Sum_probs=353.0
Q ss_pred CCHHHHHHHHHHHHHHhhccCchhhhhcccCCCCchHHHHHHHHhcCCCCCCCCccCCCCCCCHHHHHHHHHHHHhcCCc
Q psy12318 11 LTEEQNKLRETVASYCKTHITPIAADIDSTNDFKDLRKVWKDFGQLGLLGITVPEEFGGSEMGYLDHVIAMEELSRSSAS 90 (392)
Q Consensus 11 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~p~~~GG~~~~~~~~~~~~~~la~~~~s 90 (392)
++++++++++.+++|+.+++.+...+.|..+.+|. ++|+.|++.||+++.+|++|||.|+++.+...++++|++.|++
T Consensus 1 ~~~~~~~l~~~~~~~~~~~~~~~a~~~d~~~~~p~--~~~~~l~~~Gl~~~~vP~~~GG~g~~~~~~~~~~~~l~~~~~~ 78 (375)
T cd01162 1 LNEEQRAIQEVARAFAAKEMAPHAADWDQKKHFPV--DVLRKAAELGFGGIYIRDDVGGSGLSRLDASIIFEALSTGCVS 78 (375)
T ss_pred CCHHHHHHHHHHHHHHHHhCCcchhhHHhhCCCCH--HHHHHHHHCCCCCcCCCHhhCCCCCCHHHHHHHHHHHHhhchh
Confidence 57899999999999999999998888888889998 9999999999999999999999999999999999999999999
Q ss_pred chhHHHhhhhhHHHHHHhcCCHHHHHHhhhHHhcCCeeEEEeecCCCCCCCcCCceeEEEEeCCeEEEeeeEeeeeCCCC
Q psy12318 91 VGLSFVAHSNLCVNQINRHATKQQKEKYLPALCSGEKIGCLAMSEPGSGSDVISMSLKAEKKGDMYVLNGNKFWITNGPD 170 (392)
Q Consensus 91 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~te~~~gsd~~~~~~~a~~~~~g~~l~G~k~~vs~~~~ 170 (392)
+++.+.+|. +....+..+++++|+++|++++.+|+.++++++|||++|+|...+.++++++++||+|||+|+|+||+.+
T Consensus 79 ~~~~~~~~~-~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~~g~~l~G~k~~vs~~~~ 157 (375)
T cd01162 79 TAAYISIHN-MCAWMIDSFGNDEQRERFLPDLCTMEKLASYCLTEPGSGSDAAALRTRAVREGDHYVLNGSKAFISGAGD 157 (375)
T ss_pred HHHHHHHhh-hHHHHHHHhCCHHHHHHHHHHHhCCCceeEEEecCCCCCCChhhCEEEEEEeCCEEEEEEEEEEecCCCC
Confidence 998888887 6777888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEEEeCCCCCCCCCceEEEEEeCCCCCccccccccccCCCCCCcEEEEEcceeeCCCCcccCCCccHHHHHHhhc
Q psy12318 171 ADIAVVYARTNPNADKKQHGISTFIVEKGTPGFSKGKKLNKLGMRGSNTGELIFENCQVPAENLLGGENKGAYVLMSGLD 250 (392)
Q Consensus 171 ad~~lv~a~~~~~~~~~~~~~~~~lV~~~~~Gv~~~~~~~~~G~~~~~s~~v~f~~v~Vp~~~~l~~~~~g~~~~~~~~~ 250 (392)
||+++|.++..++ +..++++|+||++.|||++.++|+++|++++++++|.||||+||.+++++.+++|+......+.
T Consensus 158 ad~~~v~a~~~~~---~~~~~~~~lv~~~~~gv~v~~~~~~~g~~~~~~~~l~f~~v~Vp~~~~lg~~~~g~~~~~~~l~ 234 (375)
T cd01162 158 SDVYVVMARTGGE---GPKGISCFVVEKGTPGLSFGANEKKMGWNAQPTRAVIFEDCRVPVENRLGGEGQGFGIAMAGLN 234 (375)
T ss_pred CCEEEEEEEecCC---CCCceEEEEEeCCCCCeecCCcccccCCCCCCeeEEEECceEecHHHcCCCCCchHHHHHHHHH
Confidence 9999999997542 3356889999999999999999999999999999999999999999999998889888788889
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHhhhhcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC-ChHHHHHH
Q psy12318 251 LERLVISAGPVGIMQACCDFAFNYVHERVQFGTRIGEFQLMQGKIADMHVALSASRAYLYSVAKACDRGSI-NSKECAGV 329 (392)
Q Consensus 251 ~~r~~~~a~~~G~a~~al~~~~~~~~~r~~~g~~l~~~~~v~~~la~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 329 (392)
..|+.+++.++|+++++++.+++|+++|++||+|+.++|.+|++++++..++++++++++.+++.++.+.+ .....+++
T Consensus 235 ~~r~~~aa~~lG~a~~al~~~~~~a~~R~~fg~~l~~~~~vq~~la~~~~~l~~a~~~~~~a~~~~~~~~~~~~~~~~~a 314 (375)
T cd01162 235 GGRLNIASCSLGAAQAALDLARAYLEERKQFGKPLADFQALQFKLADMATELVASRLMVRRAASALDRGDPDAVKLCAMA 314 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCccHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999987743 35567899
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCcccCCChHHHHHHhhccCcccCChHHHHHHHHHHHHhhh
Q psy12318 330 FLVAAENAVKVALEAIQCLGGNGYINDYPTGRYLRDAKLYEIGAGTSEVRRIVIGRSINAE 390 (392)
Q Consensus 330 k~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~rd~~~~~~~~g~~~~~~~~l~~~~l~~ 390 (392)
|+++++.+.++++.+++++||.||.++++++|+|||++...+++|++++++..+++.++++
T Consensus 315 k~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~G~~~~~~~~~~~~~~~~ 375 (375)
T cd01162 315 KRFATDECFDVANQALQLHGGYGYLKDYPVEQYVRDLRVHQILEGTNEIMRLIIARALLTR 375 (375)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccccCChHHHHHHHhhcceeecCHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999999864
No 9
>cd01157 MCAD Medium chain acyl-CoA dehydrogenase. MCADs are mitochondrial beta-oxidation enzymes, which catalyze the alpha,beta dehydrogenation of the corresponding medium chain acyl-CoA by FAD, which becomes reduced. The reduced form of MCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. MCAD is a homotetramer.
Probab=100.00 E-value=3.6e-66 Score=494.82 Aligned_cols=377 Identities=35% Similarity=0.561 Sum_probs=350.3
Q ss_pred CCHHHHHHHHHHHHHHhhccCchhhhhcccCCCCchHHHHHHHHhcCCCCCCCCccCCCCCCCHHHHHHHHHHHHhcCCc
Q psy12318 11 LTEEQNKLRETVASYCKTHITPIAADIDSTNDFKDLRKVWKDFGQLGLLGITVPEEFGGSEMGYLDHVIAMEELSRSSAS 90 (392)
Q Consensus 11 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~p~~~GG~~~~~~~~~~~~~~la~~~~s 90 (392)
++++++++++.+++|+.+.+.+...+.|+.+.||. ++|+.|.+.||+++.+|++|||.|+++.+...+++++++.|++
T Consensus 1 ~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~p~--~~~~~l~~~G~~~~~vP~~~GG~g~~~~~~~~v~e~l~~~~~~ 78 (378)
T cd01157 1 LTEQQKEFQETARKFAREEIIPVAAEYDKSGEYPW--PLIKRAWELGLMNTHIPEDCGGLGLGTFDTCLITEELAYGCTG 78 (378)
T ss_pred CCHHHHHHHHHHHHHHHHhcccchHHHHhhCCCCH--HHHHHHHhCCCCCcCCChhhCCCCCCHHHHHHHHHHHHhhhhH
Confidence 57889999999999999999998888888888999 9999999999999999999999999999999999999999999
Q ss_pred chhHHHhhhhhHHHHHHhcCCHHHHHHhhhHHhcCCeeEEEeecCCCCCCCcCCceeEEEEeCCeEEEeeeEeeeeCCCC
Q psy12318 91 VGLSFVAHSNLCVNQINRHATKQQKEKYLPALCSGEKIGCLAMSEPGSGSDVISMSLKAEKKGDMYVLNGNKFWITNGPD 170 (392)
Q Consensus 91 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~te~~~gsd~~~~~~~a~~~~~g~~l~G~k~~vs~~~~ 170 (392)
+++.+..+. ++...+..+++++|+++||+++.+|+.++++++|||+.|+|...+.++++++++||+|||+|.|+|++.+
T Consensus 79 ~~~~~~~~~-~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~gs~~~~~~t~a~~~~~g~~l~G~k~~vs~~~~ 157 (378)
T cd01157 79 VQTAIEANS-LGQMPVIISGNDEQKKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGK 157 (378)
T ss_pred HHHHHHhhh-hhHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCchhcCeEEEEEcCCEEEEeeEEEeecCCcc
Confidence 877765554 5555677789999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEEEeCCCCC-CCCCceEEEEEeCCCCCccccccccccCCCCCCcEEEEEcceeeCCCCcccCCCccHHHHHHhh
Q psy12318 171 ADIAVVYARTNPNAD-KKQHGISTFIVEKGTPGFSKGKKLNKLGMRGSNTGELIFENCQVPAENLLGGENKGAYVLMSGL 249 (392)
Q Consensus 171 ad~~lv~a~~~~~~~-~~~~~~~~~lV~~~~~Gv~~~~~~~~~G~~~~~s~~v~f~~v~Vp~~~~l~~~~~g~~~~~~~~ 249 (392)
||+++|.++++++.+ ++..++++|+||.+.|||++.++|+++|+++++++++.|+||+||.+++++.++.|+......+
T Consensus 158 ad~~lv~a~~~~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~G~~~~~s~~~~~~~v~Vp~~~~lg~~~~g~~~~~~~~ 237 (378)
T cd01157 158 ANWYFLLARSDPDPKCPASKAFTGFIVEADTPGIQPGRKELNMGQRCSDTRGITFEDVRVPKENVLIGEGAGFKIAMGAF 237 (378)
T ss_pred CCEEEEEEEeCCcccCCCCCceEEEEEcCCCCCeeccCcccccCCCCCCceEEEeccEEECHHHcCCCCCchHHHHHHHH
Confidence 999999999754321 1245788999999999999999999999999999999999999999999998888998888888
Q ss_pred cHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChHHHHHH
Q psy12318 250 DLERLVISAGPVGIMQACCDFAFNYVHERVQFGTRIGEFQLMQGKIADMHVALSASRAYLYSVAKACDRGSINSKECAGV 329 (392)
Q Consensus 250 ~~~r~~~~a~~~G~a~~al~~~~~~~~~r~~~g~~l~~~~~v~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (392)
...|+.+++.++|+++++++.+++|+++|.+||+++.++|.+|++++++.+++++++++++.+++..+.+.......+++
T Consensus 238 ~~~r~~~aa~~lG~a~~~l~~~~~~~~~R~~fg~~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~d~~~~~~~~~~~a 317 (378)
T cd01157 238 DKTRPPVAAGAVGLAQRALDEATKYALERKTFGKLIAEHQAVSFMLADMAMKVELARLAYQRAAWEVDSGRRNTYYASIA 317 (378)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhccccCccHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999888765555677899
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCcccCCChHHHHHHhhccCcccCChHHHHHHHHHHHHhhh
Q psy12318 330 FLVAAENAVKVALEAIQCLGGNGYINDYPTGRYLRDAKLYEIGAGTSEVRRIVIGRSINAE 390 (392)
Q Consensus 330 k~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~rd~~~~~~~~g~~~~~~~~l~~~~l~~ 390 (392)
|+++++.+.++++.+++++||.||.++++++|+|||++.+.+++|++++++..|++.++++
T Consensus 318 K~~~~~~a~~~~~~a~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~G~~~~~~~~i~~~~~~~ 378 (378)
T cd01157 318 KAFAADIANQLATDAVQIFGGNGFNSEYPVEKLMRDAKIYQIYEGTSQIQRLIISREHLGK 378 (378)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCccCCCCHHHHHHHHHhhceecCCHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999998864
No 10
>cd01156 IVD Isovaleryl-CoA dehydrogenase. Isovaleryl-CoA dehydrogenase (IVD) is an is an acyl-CoA dehydrogenase, which catalyzes the third step in leucine catabolism, the conversion of isovaleryl-CoA (3-methylbutyryl-CoA) into 3-methylcrotonyl-CoA. IVD is a homotetramer and has the greatest affinity for small branched chain substrates.
Probab=100.00 E-value=6.5e-66 Score=492.92 Aligned_cols=375 Identities=67% Similarity=1.114 Sum_probs=352.9
Q ss_pred CCHHHHHHHHHHHHHHhhccCchhhhhcccCCCCchHHHHHHHHhcCCCCCCCCccCCCCCCCHHHHHHHHHHHHhcCCc
Q psy12318 11 LTEEQNKLRETVASYCKTHITPIAADIDSTNDFKDLRKVWKDFGQLGLLGITVPEEFGGSEMGYLDHVIAMEELSRSSAS 90 (392)
Q Consensus 11 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~p~~~GG~~~~~~~~~~~~~~la~~~~s 90 (392)
++++++++++.+++|+.+++.+.+.+.|+++.+|. ++|+.|++.||+++.+|++|||.++++.+...++++|++.|++
T Consensus 2 ~~~~~~~l~~~~~~~~~~~~~~~a~~~d~~~~~~~--~~~~~l~~~Gl~~~~vP~e~GG~g~~~~~~~~~~e~la~~~~~ 79 (376)
T cd01156 2 LDDEIEMLRQSVREFAQKEIAPLAAKIDRDNEFPR--DLWRKMGKLGLLGITAPEEYGGSGMGYLAHVIIMEEISRASGS 79 (376)
T ss_pred CCHHHHHHHHHHHHHHHHhcCcchHHHHhhCCCCH--HHHHHHHhCCCCcccCCHhhCCCCCCHHHHHHHHHHHhccchh
Confidence 67899999999999999999998888888888998 9999999999999999999999999999999999999999999
Q ss_pred chhHHHhhhhhHHHHHHhcCCHHHHHHhhhHHhcCCeeEEEeecCCCCCCCcCCceeEEEEeCCeEEEeeeEeeeeCCCC
Q psy12318 91 VGLSFVAHSNLCVNQINRHATKQQKEKYLPALCSGEKIGCLAMSEPGSGSDVISMSLKAEKKGDMYVLNGNKFWITNGPD 170 (392)
Q Consensus 91 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~te~~~gsd~~~~~~~a~~~~~g~~l~G~k~~vs~~~~ 170 (392)
+++.+..|...+...|..+++++|+++|++++.+|+.++++++|||++|+|...+.++++++++||+|||+|.|+||+..
T Consensus 80 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~sEp~~gs~~~~~~t~a~~~~~g~~l~G~k~~vs~~~~ 159 (376)
T cd01156 80 VALSYGAHSNLCINQIYRNGSAAQKEKYLPKLISGEHIGALAMSEPNAGSDVVSMKLRAEKKGDRYVLNGSKMWITNGPD 159 (376)
T ss_pred HHHHHHHhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCChhhCeEEEEEeCCEEEEEEEEEEecCCCc
Confidence 99988777645566889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEEEeCCCCCCCCCceEEEEEeCCCCCccccccccccCCCCCCcEEEEEcceeeCCCCcccCCCccHHHHHHhhc
Q psy12318 171 ADIAVVYARTNPNADKKQHGISTFIVEKGTPGFSKGKKLNKLGMRGSNTGELIFENCQVPAENLLGGENKGAYVLMSGLD 250 (392)
Q Consensus 171 ad~~lv~a~~~~~~~~~~~~~~~~lV~~~~~Gv~~~~~~~~~G~~~~~s~~v~f~~v~Vp~~~~l~~~~~g~~~~~~~~~ 250 (392)
||+++|.++++++. +..++++|+||++.|||++.++|+++|++++++++|.|+||+||++++++..+.|+......+.
T Consensus 160 a~~~lv~a~~~~~~--~~~~~~~~lv~~~~~gv~~~~~~~~~G~~~~~~~~v~~~~v~Vp~~~~lg~~~~g~~~~~~~~~ 237 (376)
T cd01156 160 ADTLVVYAKTDPSA--GAHGITAFIVEKGMPGFSRAQKLDKLGMRGSNTCELVFEDCEVPEENILGGENKGVYVLMSGLD 237 (376)
T ss_pred CCEEEEEEEeCCCC--CCCceEEEEEcCCCCCeecCCccccccCCCCCceEEEeCceEecHHHcCCCCCchHHHHHHHHh
Confidence 99999999876532 4457899999999999999999999999999999999999999999999998999888888899
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHhhhhcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChHHHHHHH
Q psy12318 251 LERLVISAGPVGIMQACCDFAFNYVHERVQFGTRIGEFQLMQGKIADMHVALSASRAYLYSVAKACDRGSINSKECAGVF 330 (392)
Q Consensus 251 ~~r~~~~a~~~G~a~~al~~~~~~~~~r~~~g~~l~~~~~v~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 330 (392)
..|+.+++.++|+++++++.+++|+++|++||+|+.++|.+|++++++..++++++++++.+++.++++.......+.+|
T Consensus 238 ~~r~~~aa~~lG~a~~al~~~~~~~~~R~~~g~~i~~~~~v~~~la~~~~~l~aar~~~~~aa~~~d~~~~~~~~~~~~k 317 (376)
T cd01156 238 YERLVLAGGPIGIMQAALDVAIPYAHQRKQFGQPIGEFQLVQGKLADMYTRLNASRSYLYTVAKACDRGNMDPKDAAGVI 317 (376)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCcchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999988765566788899
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcccCCChHHHHHHhhccCcccCChHHHHHHHHHHHHhh
Q psy12318 331 LVAAENAVKVALEAIQCLGGNGYINDYPTGRYLRDAKLYEIGAGTSEVRRIVIGRSINA 389 (392)
Q Consensus 331 ~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~rd~~~~~~~~g~~~~~~~~l~~~~l~ 389 (392)
+++++.+.+++..+++++||.||.++++++|+|||++...+++|++++++..|++.+++
T Consensus 318 ~~~~~~a~~~~~~a~~~~Gg~g~~~~~~l~r~~Rda~~~~~~~gt~~~~~~~i~~~~~~ 376 (376)
T cd01156 318 LYAAEKATQVALDAIQILGGNGYINDYPTGRLLRDAKLYEIGAGTSEIRRMVIGRELFK 376 (376)
T ss_pred HHHHHHHHHHHHHHHHHhcCcccccCCHHHHHHHHhhcceecCCHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999999998753
No 11
>TIGR03207 cyc_hxne_CoA_dh cyclohexanecarboxyl-CoA dehydrogenase. Cyclohex-1-ene-1carboxyl-CoA is an intermediate in the anaerobic degradation of benzoyl-CoA derived from varioius aromatic compounds, in Rhodopseudomonas palustris but not Thauera aromatica. The aliphatic compound cyclohexanecarboxylate, can be converted to the same intermediate in two steps. The first step is its ligation to coenzyme A. The second is the action of this enzyme, cyclohexanecarboxyl-CoA dehydrogenase.
Probab=100.00 E-value=4.9e-66 Score=492.48 Aligned_cols=370 Identities=31% Similarity=0.511 Sum_probs=345.1
Q ss_pred CCHHHHHHHHHHHHHHhhccCchhhhhcccCCCCchHHHHHHHHhcCCCCCCCCccCCCCCCCHHHHHHHHHHHHhcCCc
Q psy12318 11 LTEEQNKLRETVASYCKTHITPIAADIDSTNDFKDLRKVWKDFGQLGLLGITVPEEFGGSEMGYLDHVIAMEELSRSSAS 90 (392)
Q Consensus 11 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~p~~~GG~~~~~~~~~~~~~~la~~~~s 90 (392)
|+++++++++.+++|+++.+.|...+.|+.+.+|. ++|+.|.+.||+++.+|++|||.|+++.+...+++++++.|++
T Consensus 1 ~t~~~~~l~~~~~~~~~~~~~p~~~~~d~~~~~~~--~~~~~l~~~G~~~l~vP~~~GG~g~~~~~~~~~~e~la~~~~s 78 (372)
T TIGR03207 1 LNEDLQALADTARRFARERIAPGFKERDKTRVLDR--ELMRDMGEMGFIGPELPEEHGGLGMGCLAAGVIHEQIARADLS 78 (372)
T ss_pred CCHHHHHHHHHHHHHHHHhcCcchHHHHhhCCCCH--HHHHHHHHCCCCcccCChhHCCCCCCHHHHHHHHHHHHhhCcc
Confidence 57889999999999999999998878888888999 9999999999999999999999999999999999999999999
Q ss_pred chhHHHhhhhhHHHHHHhcCCHHHHHHhhhHHhcCCeeEEEeecCCCCCCCcCCceeEEEEeCCeEEEeeeEeeeeCCCC
Q psy12318 91 VGLSFVAHSNLCVNQINRHATKQQKEKYLPALCSGEKIGCLAMSEPGSGSDVISMSLKAEKKGDMYVLNGNKFWITNGPD 170 (392)
Q Consensus 91 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~te~~~gsd~~~~~~~a~~~~~g~~l~G~k~~vs~~~~ 170 (392)
+++....+. ++...+..+++++|+++|++++.+|+.++++++|||++|||..++.++++++++||+|||+|.|+||+.+
T Consensus 79 ~~~~~~~~~-~~~~~l~~~g~~~~~~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~lnG~k~~vs~~~~ 157 (372)
T TIGR03207 79 MSYVNLLAS-LNGQILAQHARPEIAKPWLGQLIAGEALFAIALTEPRGGSDAARLRLRAERDGDDYVLNGEKTSISAADQ 157 (372)
T ss_pred HHHHHHhhh-HHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCcChhhCEEEEEEeCCEEEEEEEEEEEcCCCc
Confidence 987655444 5666788899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEEEeCCCCCCCCCceEEEEEeCCCCCccccccccccCCCCCCcEEEEEcceeeCCCCcccCCCccHHHHHHhhc
Q psy12318 171 ADIAVVYARTNPNADKKQHGISTFIVEKGTPGFSKGKKLNKLGMRGSNTGELIFENCQVPAENLLGGENKGAYVLMSGLD 250 (392)
Q Consensus 171 ad~~lv~a~~~~~~~~~~~~~~~~lV~~~~~Gv~~~~~~~~~G~~~~~s~~v~f~~v~Vp~~~~l~~~~~g~~~~~~~~~ 250 (392)
+|+++|+++++++++ +..++.+|+||++.|||++ .+|+++|++++++++|.|+||+||++++++.++.|+......++
T Consensus 158 ad~~lv~a~~~~~~~-~~~~~~~~lVp~~~~gv~~-~~~~~~G~r~~~~~~v~f~~v~Vp~~~~lg~~~~g~~~~~~~l~ 235 (372)
T TIGR03207 158 ADAAVVFARTGSEAE-GARGISAFLVPMDLPGITR-NRFDCHGQRAIGRGSIFFENVRVPADHMLGNEGQGFVQVMQGFD 235 (372)
T ss_pred CCEEEEEEEcCCCCC-CCCceEEEEEcCCCCCeec-CcchhccCCCCCeeEEEECceeccHHHcCCCCChhHHHHHHHHH
Confidence 999999999754321 3457889999999999997 57999999999999999999999999999998899988888899
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHhhhhcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChHHHHHHH
Q psy12318 251 LERLVISAGPVGIMQACCDFAFNYVHERVQFGTRIGEFQLMQGKIADMHVALSASRAYLYSVAKACDRGSINSKECAGVF 330 (392)
Q Consensus 251 ~~r~~~~a~~~G~a~~al~~~~~~~~~r~~~g~~l~~~~~v~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 330 (392)
..|+.+++.++|+++++++.+++|+++|++||+|+.++|.+|++++++.+.+++++++++.+++.++.+.+....++++|
T Consensus 236 ~~r~~~a~~~~G~a~~al~~a~~~~~~R~~fg~~i~~~q~v~~~la~~~~~~~~ar~l~~~aa~~~~~~~~~~~~~~~aK 315 (372)
T TIGR03207 236 FSRALIGLQVLAVARAALDETWRYVAERQAFGKPLSAFQGVSHPLADAETQVEAARLLCLQTLWLKDHGLPHTSEAAMCK 315 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCchhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999887765566789999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcccCCChHHHHHHhhccCcccCChHHHHHHHHHHH
Q psy12318 331 LVAAENAVKVALEAIQCLGGNGYINDYPTGRYLRDAKLYEIGAGTSEVRRIVIGRS 386 (392)
Q Consensus 331 ~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~rd~~~~~~~~g~~~~~~~~l~~~ 386 (392)
+++++.+.++++.++|++||.||.++ |++|+|||++...+++|++++++..|++.
T Consensus 316 ~~~~~~a~~v~~~a~~v~Gg~g~~~~-~l~r~~rd~~~~~i~~Gt~~~~~~~i~~~ 370 (372)
T TIGR03207 316 WWAPKLAYDVIHQCLLTHGHGGYDRG-DMEQRLRDVLGFQIGDGTAQIMKTIIARH 370 (372)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcCCCc-hHHHHHhHhhheeecCCHHHHHHHHHhhc
Confidence 99999999999999999999999999 99999999999999999999999999874
No 12
>PTZ00461 isovaleryl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=1e-65 Score=495.41 Aligned_cols=375 Identities=41% Similarity=0.652 Sum_probs=351.1
Q ss_pred CCCCHHHHHHHHHHHHHHhhccCchhhhhcccCCCCchHHHHHHHHhcCCCCCCCCccCCCCCCCHHHHHHHHHHHHhcC
Q psy12318 9 YDLTEEQNKLRETVASYCKTHITPIAADIDSTNDFKDLRKVWKDFGQLGLLGITVPEEFGGSEMGYLDHVIAMEELSRSS 88 (392)
Q Consensus 9 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~p~~~GG~~~~~~~~~~~~~~la~~~ 88 (392)
|.++++++++++.+++|+.+++.+...+.|+...+|. ++|+.|++.||+++.+|++|||.|+++.+...+++++++.|
T Consensus 35 ~~~~~~~~~l~~~~~~~~~~~~~~~a~~~d~~~~~~~--~~~~~l~~~Gl~~l~vP~~~GG~g~~~~~~~~~~e~la~~~ 112 (410)
T PTZ00461 35 YNPTPEHAALRETVAKFSREVVDKHAREDDINMHFNR--DLFKQLGDLGVMGVTVPEADGGAGMDAVAAVIIHHELSKYD 112 (410)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCccHHHHhhhCCCCH--HHHHHHHHCCCCcccCChhhCCCCCCHHHHHHHHHHHHhhC
Confidence 7899999999999999999999998888888888999 99999999999999999999999999999999999999999
Q ss_pred CcchhHHHhhhhhHHHHHHhcCCHHHHHHhhhHHhcCCeeEEEeecCCCCCCCcCCceeEEEEeCC-eEEEeeeEeeeeC
Q psy12318 89 ASVGLSFVAHSNLCVNQINRHATKQQKEKYLPALCSGEKIGCLAMSEPGSGSDVISMSLKAEKKGD-MYVLNGNKFWITN 167 (392)
Q Consensus 89 ~s~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~te~~~gsd~~~~~~~a~~~~~-g~~l~G~k~~vs~ 167 (392)
+++++.+..|..+....+..+++++|+++|++++.+|+.++++++|||++|||...+.|+++++++ ||+|||+|.|+||
T Consensus 113 ~s~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~gg~~L~G~K~~vs~ 192 (410)
T PTZ00461 113 PGFCLAYLAHSMLFVNNFYYSASPAQRARWLPKVLTGEHVGAMGMSEPGAGTDVLGMRTTAKKDSNGNYVLNGSKIWITN 192 (410)
T ss_pred chHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCChHHCeEEEEEcCCCeEEEEeEEEeECC
Confidence 988777766654455677889999999999999999999999999999999999999999999864 7999999999999
Q ss_pred CCCCcEEEEEEEeCCCCCCCCCceEEEEEeCCCCCccccccccccCCCCCCcEEEEEcceeeCCCCcccCCCccHHHHHH
Q psy12318 168 GPDADIAVVYARTNPNADKKQHGISTFIVEKGTPGFSKGKKLNKLGMRGSNTGELIFENCQVPAENLLGGENKGAYVLMS 247 (392)
Q Consensus 168 ~~~ad~~lv~a~~~~~~~~~~~~~~~~lV~~~~~Gv~~~~~~~~~G~~~~~s~~v~f~~v~Vp~~~~l~~~~~g~~~~~~ 247 (392)
+..||+++|.+++++ ++++|+||++.|||++.++|+++|+++++++++.|+||+||++++++.+++|+.....
T Consensus 193 a~~Ad~~lv~a~~~~-------~~~~flVp~~~~Gv~v~~~~~~~G~r~~~~~~l~f~~v~Vp~~~~lg~~g~g~~~~~~ 265 (410)
T PTZ00461 193 GTVADVFLIYAKVDG-------KITAFVVERGTKGFTQGPKIDKCGMRASHMCQLFFEDVVVPAENLLGEEGKGMVGMMR 265 (410)
T ss_pred CccCCEEEEEEEeCC-------ceEEEEEeCCCCCeecCCCCcccCCCCCceEEEEEcceecCHHHhCCCCCccHHHHHH
Confidence 999999999998641 3788999999999999999999999999999999999999999999999999888888
Q ss_pred hhcHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChHHHH
Q psy12318 248 GLDLERLVISAGPVGIMQACCDFAFNYVHERVQFGTRIGEFQLMQGKIADMHVALSASRAYLYSVAKACDRGSINSKECA 327 (392)
Q Consensus 248 ~~~~~r~~~~a~~~G~a~~al~~~~~~~~~r~~~g~~l~~~~~v~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (392)
.+...|+.+++.++|+++++++.+++|+++|.+||+|+.++|.+|++|+++..++++++++++.+++..+.+......++
T Consensus 266 ~~~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fg~~i~~~q~vq~~la~~~~~l~aar~l~~~aa~~~~~~~~~~~~~~ 345 (410)
T PTZ00461 266 NLELERVTLAAMAVGIAERSVELMTSYASERKAFGKPISNFGQIQRYIAEGYADTEAAKALVYSVSHNVHPGNKNRLGSD 345 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeecCcCHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999998877655566788
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcccCCChHHHHHHhhccCcccCChHHHHHHHHHHHHhhhcC
Q psy12318 328 GVFLVAAENAVKVALEAIQCLGGNGYINDYPTGRYLRDAKLYEIGAGTSEVRRIVIGRSINAEYK 392 (392)
Q Consensus 328 ~~k~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~rd~~~~~~~~g~~~~~~~~l~~~~l~~~~ 392 (392)
++|+++++.+.++++.++|++||.||.++++++|+|||++.+.+++|++++++..|++.++++.|
T Consensus 346 ~aK~~a~~~a~~v~~~a~qv~Gg~G~~~~~~l~r~~Rda~~~~i~~Gt~e~~~~~i~~~~~~~~~ 410 (410)
T PTZ00461 346 AAKLFATPIAKKVADSAIQVMGGMGYSRDMPVERLWRDAKLLEIGGGTIEAHHKNITKDLLKGLK 410 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcccCCCCHHHHHHHHHhhheeccCHHHHHHHHHHHHHHhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999987643
No 13
>cd01160 LCAD Long chain acyl-CoA dehydrogenase. LCAD is an acyl-CoA dehydrogenases (ACAD), which is found in the mitochondria of eukaryotes and in some prokaryotes. It catalyzes the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of LCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. LCAD acts as a homodimer.
Probab=100.00 E-value=1.9e-65 Score=489.02 Aligned_cols=370 Identities=39% Similarity=0.689 Sum_probs=346.3
Q ss_pred HHHHHHHHHHHHHhhccCchhhhhcccCCCCchHHHHHHHHhcCCCCCCCCccCCCCCCCHHHHHHHHHHHHhcCCcchh
Q psy12318 14 EQNKLRETVASYCKTHITPIAADIDSTNDFKDLRKVWKDFGQLGLLGITVPEEFGGSEMGYLDHVIAMEELSRSSASVGL 93 (392)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~p~~~GG~~~~~~~~~~~~~~la~~~~s~~~ 93 (392)
+++++++.+++|+.+++.+...+.|+++.+|. ++|+.|++.||+++.+|++|||.|+++.+...+++++++.+.+ ++
T Consensus 2 ~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~~l~~~G~~~~~vP~~~GG~g~~~~~~~~~~e~la~~~~~-~~ 78 (372)
T cd01160 2 EHDAFRDVVRRFFAKEVAPFHHEWEKAGEVPR--EVWRKAGEQGLLGVGFPEEYGGIGGDLLSAAVLWEELARAGGS-GP 78 (372)
T ss_pred hHHHHHHHHHHHHHHhCchhHHHHHhhCCCCH--HHHHHHHhCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHhcch-HH
Confidence 57899999999999999988888888888999 9999999999999999999999999999999999999996655 67
Q ss_pred HHHhhhhhHHHHHHhcCCHHHHHHhhhHHhcCCeeEEEeecCCCCCCCcCCceeEEEEeCCeEEEeeeEeeeeCCCCCcE
Q psy12318 94 SFVAHSNLCVNQINRHATKQQKEKYLPALCSGEKIGCLAMSEPGSGSDVISMSLKAEKKGDMYVLNGNKFWITNGPDADI 173 (392)
Q Consensus 94 ~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~te~~~gsd~~~~~~~a~~~~~g~~l~G~k~~vs~~~~ad~ 173 (392)
.+.+|..++...+..+++++|+++|++++.+|+.++|+++|||++|||...+.|+++++++||+|||+|.|+||+.+||+
T Consensus 79 ~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~~g~~l~G~k~~vs~~~~Ad~ 158 (372)
T cd01160 79 GLSLHTDIVSPYITRAGSPEQKERVLPQMVAGKKIGAIAMTEPGAGSDLQGIRTTARKDGDHYVLNGSKTFITNGMLADV 158 (372)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCchhhCeEEEEEeCCEEEEeeEEEEecCCCccCE
Confidence 77777645667888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCCCCCCCCceEEEEEeCCCCCccccccccccCCCCCCcEEEEEcceeeCCCCcccCCCccHHHHHHhhcHHH
Q psy12318 174 AVVYARTNPNADKKQHGISTFIVEKGTPGFSKGKKLNKLGMRGSNTGELIFENCQVPAENLLGGENKGAYVLMSGLDLER 253 (392)
Q Consensus 174 ~lv~a~~~~~~~~~~~~~~~~lV~~~~~Gv~~~~~~~~~G~~~~~s~~v~f~~v~Vp~~~~l~~~~~g~~~~~~~~~~~r 253 (392)
++|.++++++.+ +..++.+|+||++.|||++.++|+++||+++++++|.|+||+||.+++|+.++.|+......+...|
T Consensus 159 ~~v~a~~~~~~~-~~~~~~~~lv~~~~~gv~~~~~~~~~G~~~~~~~~v~~~~v~Vp~~~~lg~~~~g~~~~~~~~~~~~ 237 (372)
T cd01160 159 VIVVARTGGEAR-GAGGISLFLVERGTPGFSRGRKLKKMGWKAQDTAELFFDDCRVPAENLLGEENKGFYYLMQNLPQER 237 (372)
T ss_pred EEEEEEeCCCCC-CCCceEEEEEeCCCCCeecCCccccccCCCCCeEEEEecceEccHHHcCCCCCchHHHHHHHHHHHH
Confidence 999999865421 3467899999999999999999999999999999999999999999999999999888888899999
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHhhhhcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHH
Q psy12318 254 LVISAGPVGIMQACCDFAFNYVHERVQFGTRIGEFQLMQGKIADMHVALSASRAYLYSVAKACDRGSINSKECAGVFLVA 333 (392)
Q Consensus 254 ~~~~a~~~G~a~~al~~~~~~~~~r~~~g~~l~~~~~v~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 333 (392)
+.+++.++|+++++++.+++|+++|++||+++.++|.+|++|+++..++++++++++.+++..+.+......++++|+++
T Consensus 238 ~~~aa~~lG~a~~al~~a~~~a~~R~~~g~~i~~~q~vq~~la~~~~~~~~a~~~~~~aa~~~~~~~~~~~~~~~aK~~~ 317 (372)
T cd01160 238 LLIAAGALAAAEFMLEETRNYVKQRKAFGKTLAQLQVVRHKIAELATKVAVTRAFLDNCAWRHEQGRLDVAEASMAKYWA 317 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccCccHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998887765567889999999
Q ss_pred HHHHHHHHHHHHHHhcCCcccCCChHHHHHHhhccCcccCChHHHHHHHHHHHH
Q psy12318 334 AENAVKVALEAIQCLGGNGYINDYPTGRYLRDAKLYEIGAGTSEVRRIVIGRSI 387 (392)
Q Consensus 334 ~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~rd~~~~~~~~g~~~~~~~~l~~~~ 387 (392)
++.+.++++.+++++||.||+++++++|+|||++.+.+++|++++++..|++.+
T Consensus 318 ~~~a~~v~~~a~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~gt~~~~~~~i~~~~ 371 (372)
T cd01160 318 TELQNRVAYECVQLHGGWGYMREYPIARAYRDARVQPIYGGTTEIMKELISRQM 371 (372)
T ss_pred HHHHHHHHHHHHHHhcCceecCCCHHHHHHHHhhcccccCCHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999875
No 14
>cd01161 VLCAD Very long chain acyl-CoA dehydrogenase. VLCAD is an acyl-CoA dehydrogenase (ACAD), which is found in the mitochondria of eukaryotes and in some bacteria. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. VLCAD acts as a homodimer.
Probab=100.00 E-value=6.4e-65 Score=490.06 Aligned_cols=380 Identities=36% Similarity=0.531 Sum_probs=350.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhhccCchhhhhcccCCCCchHHHHHHHHhcCCCCCCCCccCCCCCCCHHHHHHHHHHHH
Q psy12318 6 DTIYDLTEEQNKLRETVASYCKTHITPIAADIDSTNDFKDLRKVWKDFGQLGLLGITVPEEFGGSEMGYLDHVIAMEELS 85 (392)
Q Consensus 6 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~p~~~GG~~~~~~~~~~~~~~la 85 (392)
-+.+.++++++++++.+++|+++.+.+. ..|+.+.+|. ++|+.|++.||+++.+|++|||.++++.++..++++++
T Consensus 22 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~d~~~~~~~--~~~~~l~~~Gl~~l~vP~~~GG~g~~~~~~~~v~e~l~ 97 (409)
T cd01161 22 VLTEEQTEELNMLVGPVEKFFEEVNDPA--KNDQLEKIPR--KTLTQLKELGLFGLQVPEEYGGLGLNNTQYARLAEIVG 97 (409)
T ss_pred ccCccCCHHHHHHHHHHHHHHHHhCCch--hhccccCCCH--HHHHHHHhCCCCCCCCChhhCCCCCCHHHHHHHHHHHh
Confidence 4678899999999999999999998875 3566778998 99999999999999999999999999999999999999
Q ss_pred hcCCcchhHHHhhhhhHHHHHHhcCCHHHHHHhhhHHhcCCeeEEEeecCCCCCCCcCCceeEEEEe--CCeEEEeeeEe
Q psy12318 86 RSSASVGLSFVAHSNLCVNQINRHATKQQKEKYLPALCSGEKIGCLAMSEPGSGSDVISMSLKAEKK--GDMYVLNGNKF 163 (392)
Q Consensus 86 ~~~~s~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~te~~~gsd~~~~~~~a~~~--~~g~~l~G~k~ 163 (392)
+ |+++++.+.+|..++...+..+++++|+++|++++.+|+.++++++|||++|+|...+.++++++ ++||+|||+|.
T Consensus 98 ~-~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tEp~~Gs~~~~~~t~a~~~~~g~g~~l~G~K~ 176 (409)
T cd01161 98 M-DLGFSVTLGAHQSIGFKGILLFGTEAQKEKYLPKLASGEWIAAFALTEPSSGSDAASIRTTAVLSEDGKHYVLNGSKI 176 (409)
T ss_pred h-ChHHHHHHHHhhhhhHHHHHHcCCHHHHHHHhHHHhCCCeeEEEEecCCCCCCChhhCeeEEEEcCCCCEEEEEeEEE
Confidence 9 99998888888645555678899999999999999999999999999999999999999999984 55799999999
Q ss_pred eeeCCCCCcEEEEEEEeCCC--CCCCCCceEEEEEeCCCCCccccccccccCCCCCCcEEEEEcceeeCCCCcccCCCcc
Q psy12318 164 WITNGPDADIAVVYARTNPN--ADKKQHGISTFIVEKGTPGFSKGKKLNKLGMRGSNTGELIFENCQVPAENLLGGENKG 241 (392)
Q Consensus 164 ~vs~~~~ad~~lv~a~~~~~--~~~~~~~~~~~lV~~~~~Gv~~~~~~~~~G~~~~~s~~v~f~~v~Vp~~~~l~~~~~g 241 (392)
|+||+.+||+++|.+++++. ++....++.+|+||.+.|||++.++|+++|++++++++|.|+||+||.+++++.+++|
T Consensus 177 ~vs~~~~Ad~~lv~ar~~~~~~~g~~~~~~~~flvp~~~~gv~~~~~~~~~G~~g~~s~~v~~~~v~Vp~~~~lg~~g~g 256 (409)
T cd01161 177 WITNGGIADIFTVFAKTEVKDATGSVKDKITAFIVERSFGGVTNGPPEKKMGIKGSNTAEVYFEDVKIPVENVLGEVGDG 256 (409)
T ss_pred eecCCCcCCEEEEEEEcCCCCCCCCCCCceEEEEEeCCCCCcccCCcccccCCCCCCceEEEeccEEECHHHcCCCCChH
Confidence 99999999999999987531 1112357889999999999999999999999999999999999999999999999889
Q ss_pred HHHHHHhhcHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC-
Q psy12318 242 AYVLMSGLDLERLVISAGPVGIMQACCDFAFNYVHERVQFGTRIGEFQLMQGKIADMHVALSASRAYLYSVAKACDRGS- 320 (392)
Q Consensus 242 ~~~~~~~~~~~r~~~~a~~~G~a~~al~~~~~~~~~r~~~g~~l~~~~~v~~~la~~~~~~~~~~~~~~~~~~~~~~~~- 320 (392)
+......+...|+.+++.++|+++++++.+++|+++|++||+|+.++|.+|++++++.+++++++++++.+++.++++.
T Consensus 257 ~~~~~~~l~~~r~~~aa~~lG~a~~al~~a~~~a~~R~~fg~~l~~~q~vq~~la~~~~~~~aar~l~~~a~~~~d~~~~ 336 (409)
T cd01161 257 FKVAMNILNNGRFGMGAALIGTMKRCIEKAVDYANNRKQFGKKIHEFGLIQEKLANMAILQYATESMAYMTSGNMDRGLK 336 (409)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhceeCCccHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 8888888999999999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred -CChHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCChHHHHHHhhccCcccCChHHHHHHHHHHHHhhh
Q psy12318 321 -INSKECAGVFLVAAENAVKVALEAIQCLGGNGYINDYPTGRYLRDAKLYEIGAGTSEVRRIVIGRSINAE 390 (392)
Q Consensus 321 -~~~~~~~~~k~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~rd~~~~~~~~g~~~~~~~~l~~~~l~~ 390 (392)
+....++++|+++++.+.++++.+++++||.||.++++++|+|||+++..+++|++++++.++++.+|++
T Consensus 337 ~~~~~~~~~aK~~a~~~a~~v~~~a~~~~Gg~G~~~~~~l~r~~Rd~~~~~~~~G~~~~~~~~ia~~~l~~ 407 (409)
T cd01161 337 AEYQIEAAISKVFASEAAWLVVDEAIQIHGGMGFMREYGVERVLRDLRIFRIFEGTNEILRLFIALTGLQH 407 (409)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCCCcHHHHHHhhhcceeecCHHHHHHHHHHHHHhhh
Confidence 2456789999999999999999999999999999999999999999999999999999999999999874
No 15
>TIGR03203 pimD_small pimeloyl-CoA dehydrogenase, small subunit. Members of this protein family are the PimD proteins of species such as Rhodopseudomonas palustris, Bradyrhizobium japonicum. The pimFABCDE operon encodes proteins for the metabolism of straight chain dicarboxylates of seven to fourteen carbons. Especially relevant is pimeloyl-CoA, basis of the gene symbol, as it is a catabolite of benzoyl-CoA degradation, which occurs in Rhodopseudomonas palustris.
Probab=100.00 E-value=6.5e-65 Score=483.85 Aligned_cols=371 Identities=26% Similarity=0.384 Sum_probs=335.5
Q ss_pred CCCCCHHHHHHHHHHHHHHhhccCchhh--hhcccCCCCchHHHHHHHHhcCCCCCCCCccCCCCCCCHHHHHHHHHHHH
Q psy12318 8 IYDLTEEQNKLRETVASYCKTHITPIAA--DIDSTNDFKDLRKVWKDFGQLGLLGITVPEEFGGSEMGYLDHVIAMEELS 85 (392)
Q Consensus 8 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~Gl~~~~~p~~~GG~~~~~~~~~~~~~~la 85 (392)
+|.++++++++++.+++|+.+.+.+... ..|+.+.||. ++|+.|.+.||+++.+|++|||.|+++.+...++++++
T Consensus 1 ~~~~~~eq~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~~l~e~G~~~l~vPe~~GG~G~~~~~~~~v~eel~ 78 (378)
T TIGR03203 1 DFDLSEEQRLLKESVEGLLKTSYDFDSRKKYQKEKGGWSK--AVWGKLAEQGLLGLPFSEADGGFGAGSVETMIVMEALG 78 (378)
T ss_pred CCCCCHHHHHHHHHHHHHHHhhCCHHHHHHHHhccCCCCH--HHHHHHHHCCCcccccchhcCCCCCCHHHHHHHHHHHh
Confidence 3789999999999999999988876543 2466778999 99999999999999999999999999999999999999
Q ss_pred hcCCcchhHHHhhhhhHHHHHHhcCCHHHHHHhhhHHhcCCeeEEEeecCCCCCCCcCCceeEEEEeCCeEEEeeeEeee
Q psy12318 86 RSSASVGLSFVAHSNLCVNQINRHATKQQKEKYLPALCSGEKIGCLAMSEPGSGSDVISMSLKAEKKGDMYVLNGNKFWI 165 (392)
Q Consensus 86 ~~~~s~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~te~~~gsd~~~~~~~a~~~~~g~~l~G~k~~v 165 (392)
+.+.+.+.. .... ++..++..+|+++||++|||++.+|+.++++++|||++|||...+.|++++++++|+|||+|.||
T Consensus 79 ~~~~~~~~~-~~~~-~~~~~l~~~g~~~qk~~~L~~l~~G~~~~a~a~tEp~~gsd~~~~~t~a~~~g~~~~l~G~K~~v 156 (378)
T TIGR03203 79 KALVLEPYL-ATVV-IGGGFLRHAGSAAQKAAHLPGIIDGSKTFAFAQLEKNSRYDLGDVSTTAKKTGDGWVIDGEKFVV 156 (378)
T ss_pred CcccchHHH-HHHH-HHHHHHHHcCCHHHHHHHHHHHhCCChhheeeecCCCCCCCcccceEEEEEcCCEEEEEeEEEEe
Confidence 987654332 2222 44567889999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCcEEEEEEEeCCCCCCCCCceEEEEEeCCCCCccccccccccCCCCCCcEEEEEcceeeCCCCcccCCCccHHHH
Q psy12318 166 TNGPDADIAVVYARTNPNADKKQHGISTFIVEKGTPGFSKGKKLNKLGMRGSNTGELIFENCQVPAENLLGGENKGAYVL 245 (392)
Q Consensus 166 s~~~~ad~~lv~a~~~~~~~~~~~~~~~~lV~~~~~Gv~~~~~~~~~G~~~~~s~~v~f~~v~Vp~~~~l~~~~~g~~~~ 245 (392)
|++..||+++|.++++++. ++..++++|+||.+.|||++.+.+..+|+ .+++|.||||+||+++++|.+++|+..+
T Consensus 157 t~a~~Ad~~lv~ar~~~~~-~~~~g~~~flV~~~~~Gv~~~~~~~~~g~---~~~~l~fd~v~vp~~~~lg~~~~g~~~~ 232 (378)
T TIGR03203 157 LNGETADTLIVTARTKGAR-RDRTGIGVFLVPAGAKGVTIKGYPTQDGL---HAADITFTGVVVGADAAIGDPENALPLI 232 (378)
T ss_pred cCCccCCEEEEEEecCCCC-CCCCceEEEEEECCCCCceeccccccCCC---ceeeEEECCCcccHHhhcCCcchHHHHH
Confidence 9999999999999975432 14467899999999999999776666655 5689999999999999999999999999
Q ss_pred HHhhcHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC--CCh
Q psy12318 246 MSGLDLERLVISAGPVGIMQACCDFAFNYVHERVQFGTRIGEFQLMQGKIADMHVALSASRAYLYSVAKACDRGS--INS 323 (392)
Q Consensus 246 ~~~~~~~r~~~~a~~~G~a~~al~~~~~~~~~r~~~g~~l~~~~~v~~~la~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 323 (392)
+..++..|+.+++.++|+++++++.+++|+++|+|||+||.++|.||++|++|.+++++++++++.+++..+.+. +..
T Consensus 233 ~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qFG~pi~~~Q~vq~~lAdm~~~~e~ar~l~~~aa~~~~~~~~~~~~ 312 (378)
T TIGR03203 233 ERVVDDARAALCAEAVGLMDESLKTTVEYIKTRKQFGVPIGSFQVLQHRAADMFVAVEQARSMAMFATMASDFDDAKERA 312 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCeecCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhH
Confidence 999999999999999999999999999999999999999999999999999999999999999999998877532 345
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCChHHHHHHhhccCcccCChHHHHHHHHHHH
Q psy12318 324 KECAGVFLVAAENAVKVALEAIQCLGGNGYINDYPTGRYLRDAKLYEIGAGTSEVRRIVIGRS 386 (392)
Q Consensus 324 ~~~~~~k~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~rd~~~~~~~~g~~~~~~~~l~~~ 386 (392)
..++++|+++++.+.++++.++|+|||.||+++++++++|||++...+.+|++++++..|++.
T Consensus 313 ~~~a~aK~~a~e~a~~va~~aiqi~Gg~G~t~e~~~~~~~r~a~~~~~~~G~~~~~~~~~~~~ 375 (378)
T TIGR03203 313 NAIAAAKVQIGKSLKFVGQQSIQLHGGIGMTMEAKIGHYFKRLTMIEHTFGDTDFHLSRVSAA 375 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccceeecccchHHHHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 678999999999999999999999999999999999999999999999999999999999884
No 16
>PLN02526 acyl-coenzyme A oxidase
Probab=100.00 E-value=2.5e-64 Score=485.53 Aligned_cols=375 Identities=29% Similarity=0.448 Sum_probs=347.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhccCchhhhhcccCCCCchHHHHHHHHhcCCCCCCCCccCCCCCCCHHHHHHHHHHHHh
Q psy12318 7 TIYDLTEEQNKLRETVASYCKTHITPIAADIDSTNDFKDLRKVWKDFGQLGLLGITVPEEFGGSEMGYLDHVIAMEELSR 86 (392)
Q Consensus 7 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~p~~~GG~~~~~~~~~~~~~~la~ 86 (392)
++..++++++++++.+++|+.+++.+...+.++...+|. ++|+.|.+.||+++.+ ++|||.|+++.++..+++++++
T Consensus 25 ~~~~~t~~~~~l~~~~~~f~~~~~~~~~~~~~~~~~~p~--~~~~~l~~~G~~~~~v-~~~GG~G~~~~~~~~~~e~la~ 101 (412)
T PLN02526 25 FDDLLTPEEQALRKRVRECMEKEVAPIMTEYWEKAEFPF--HIIPKLGSLGIAGGTI-KGYGCPGLSITASAIATAEVAR 101 (412)
T ss_pred cccCCCHHHHHHHHHHHHHHHHhcccchHHHHHhCCCCH--HHHHHHHHCCCCcCcc-cccCCCCcCHHHHHHHHHHHHh
Confidence 455689999999999999999999887666666677998 9999999999999999 8999999999999999999999
Q ss_pred cCCcchhHHHhhhhhHHHHHHhcCCHHHHHHhhhHHhcCCeeEEEeecCCCCCCCcCCceeEEEEeCCeEEEeeeEeeee
Q psy12318 87 SSASVGLSFVAHSNLCVNQINRHATKQQKEKYLPALCSGEKIGCLAMSEPGSGSDVISMSLKAEKKGDMYVLNGNKFWIT 166 (392)
Q Consensus 87 ~~~s~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~te~~~gsd~~~~~~~a~~~~~g~~l~G~k~~vs 166 (392)
.|++++..+..|..++...+..+++++|+++|++++.+|+.++++++|||+.|+|...+.++++++++||+|||+|.|+|
T Consensus 102 ~~~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~gg~~lnG~K~~vs 181 (412)
T PLN02526 102 VDASCSTFILVHSSLAMLTIALCGSEAQKQKYLPSLAQLDTVACWALTEPDYGSDASSLNTTATKVEGGWILNGQKRWIG 181 (412)
T ss_pred hCchHHHHHHHhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCChhhCeeEEEEECCEEEEEEEEeeec
Confidence 99998777777765566689999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcEEEEEEEeCCCCCCCCCceEEEEEeCCCCCccccccccccCCCCCCcEEEEEcceeeCCCCcccCCCccHHHHH
Q psy12318 167 NGPDADIAVVYARTNPNADKKQHGISTFIVEKGTPGFSKGKKLNKLGMRGSNTGELIFENCQVPAENLLGGENKGAYVLM 246 (392)
Q Consensus 167 ~~~~ad~~lv~a~~~~~~~~~~~~~~~~lV~~~~~Gv~~~~~~~~~G~~~~~s~~v~f~~v~Vp~~~~l~~~~~g~~~~~ 246 (392)
|+..||+++|.++++++ .++.+|+||.+.|||++.++|+++|++++++++|.|+||+||++++++..+ ++....
T Consensus 182 ~~~~Ad~~lv~a~~~~~-----~~~~~flV~~~~~Gv~~~~~~~~~G~r~t~s~~v~f~~v~Vp~~~~l~~~~-~~~~~~ 255 (412)
T PLN02526 182 NSTFADVLVIFARNTTT-----NQINGFIVKKGAPGLKATKIENKIGLRMVQNGDIVLKDVFVPDEDRLPGVN-SFQDTN 255 (412)
T ss_pred CCCccCEEEEEEEeCCC-----CCeEEEEEcCCCCCeEcCCCCCccCcCCCCeeEEEEeeEEECHHHhCCCcc-cHHHHH
Confidence 99999999999997532 357889999999999999999999999999999999999999999997653 666677
Q ss_pred HhhcHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChHHH
Q psy12318 247 SGLDLERLVISAGPVGIMQACCDFAFNYVHERVQFGTRIGEFQLMQGKIADMHVALSASRAYLYSVAKACDRGSINSKEC 326 (392)
Q Consensus 247 ~~~~~~r~~~~a~~~G~a~~al~~~~~~~~~r~~~g~~l~~~~~v~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (392)
..+...|+.+++.++|+++++++.+++|+++|.+||+|+.++|.+|++++++.+++++++++++.+++.+|.+.+....+
T Consensus 256 ~~~~~~r~~~aa~~lG~a~~al~~a~~~a~~R~~fg~~i~~~q~vq~~la~~~~~l~aar~~~~~aa~~~d~~~~~~~~~ 335 (412)
T PLN02526 256 KVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQEKLVRMLGNIQAMFLVGWRLCKLYESGKMTPGHA 335 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeeCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCChHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999988765556678
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcccCCChHHHHHHhhccCcccCChHHHHHHHHHHHHhhh
Q psy12318 327 AGVFLVAAENAVKVALEAIQCLGGNGYINDYPTGRYLRDAKLYEIGAGTSEVRRIVIGRSINAE 390 (392)
Q Consensus 327 ~~~k~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~rd~~~~~~~~g~~~~~~~~l~~~~l~~ 390 (392)
+++|+++++.+.++++.+++++||.||.++++++|+|||++...+++|++++++..|+|.+++.
T Consensus 336 ~~aK~~a~~~a~~v~~~a~~~~Gg~G~~~~~~l~r~~RD~~~~~~~~G~~ev~~~~i~~~~l~~ 399 (412)
T PLN02526 336 SLGKAWITKKARETVALGRELLGGNGILADFLVAKAFCDLEPIYTYEGTYDINALVTGREITGI 399 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCccccCcCHHHHHHhcccceEecCCHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999764
No 17
>cd01158 SCAD_SBCAD Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases. Short chain acyl-CoA dehydrogenase (SCAD). SCAD is a mitochondrial beta-oxidation enzyme. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of SCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. This subgroup also contains the eukaryotic short/branched chain acyl-CoA dehydrogenase(SBCAD), the bacterial butyryl-CoA dehydorgenase(BCAD) and 2-methylbutyryl-CoA dehydrogenase, which is involved in isoleucine catabolism. These enzymes are homotetramers.
Probab=100.00 E-value=3e-64 Score=481.13 Aligned_cols=372 Identities=47% Similarity=0.763 Sum_probs=351.3
Q ss_pred HHHHHHHHHHHHHhhccCchhhhhcccCCCCchHHHHHHHHhcCCCCCCCCccCCCCCCCHHHHHHHHHHHHhcCCcchh
Q psy12318 14 EQNKLRETVASYCKTHITPIAADIDSTNDFKDLRKVWKDFGQLGLLGITVPEEFGGSEMGYLDHVIAMEELSRSSASVGL 93 (392)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~p~~~GG~~~~~~~~~~~~~~la~~~~s~~~ 93 (392)
+++++++.+++|+.+++.+.+.+.|+++.+|. ++|+.|++.||+++.+|++|||.+.++.++..++++++++|+++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~a~~~d~~~~~~~--~~~~~l~~~Gl~~l~vP~e~GG~g~~~~~~~~v~~~l~~~~~s~~~ 79 (373)
T cd01158 2 EHQMIRKTVRDFAEKEIAPLAAEMDEKGEFPR--EVIKEMAELGLMGIPIPEEYGGAGLDFLAYAIAIEELAKVDASVAV 79 (373)
T ss_pred hHHHHHHHHHHHHHHhcccchHHHhhcCCCCH--HHHHHHHhCCCCcccCCHHHCCCCCCHHHHHHHHHHHHhhCccHHH
Confidence 57899999999999889888888888888998 9999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhHHHHHHhcCCHHHHHHhhhHHhcCCeeEEEeecCCCCCCCcCCceeEEEEeCCeEEEeeeEeeeeCCCCCcE
Q psy12318 94 SFVAHSNLCVNQINRHATKQQKEKYLPALCSGEKIGCLAMSEPGSGSDVISMSLKAEKKGDMYVLNGNKFWITNGPDADI 173 (392)
Q Consensus 94 ~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~te~~~gsd~~~~~~~a~~~~~g~~l~G~k~~vs~~~~ad~ 173 (392)
++.+|...+...+..+++++|++.|++++.+|+.++++++|||++|++...+.++++++++||+|||+|.|+||+.++|+
T Consensus 80 ~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~G~~~~~~a~se~~~gs~~~~~~~~a~~~~~g~~l~G~k~~vsg~~~ad~ 159 (373)
T cd01158 80 IVSVHNSLGANPIIKFGTEEQKKKYLPPLATGEKIGAFALSEPGAGSDAAALKTTAKKDGDDYVLNGSKMWITNGGEADF 159 (373)
T ss_pred HHHHHHhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCCHHHCEeEEEEeCCEEEEeeEEEEEcCCCcCCE
Confidence 99988756667889999999999999999999999999999999999998999999999999999999999999999999
Q ss_pred EEEEEEeCCCCCCCCCceEEEEEeCCCCCccccccccccCCCCCCcEEEEEcceeeCCCCcccCCCccHHHHHHhhcHHH
Q psy12318 174 AVVYARTNPNADKKQHGISTFIVEKGTPGFSKGKKLNKLGMRGSNTGELIFENCQVPAENLLGGENKGAYVLMSGLDLER 253 (392)
Q Consensus 174 ~lv~a~~~~~~~~~~~~~~~~lV~~~~~Gv~~~~~~~~~G~~~~~s~~v~f~~v~Vp~~~~l~~~~~g~~~~~~~~~~~r 253 (392)
++|.++++++. +..++++|+||.+.|||++.++|+++||++++++.|.|+||+||++++++.++.|+......+...|
T Consensus 160 ~lv~a~~~~~~--~~~~~~~~lvp~~~~gv~i~~~~~~~G~~g~~s~~v~~~~v~Vp~~~~lg~~~~g~~~~~~~~~~~r 237 (373)
T cd01158 160 YIVFAVTDPSK--GYRGITAFIVERDTPGLSVGKKEDKLGIRGSSTTELIFEDVRVPKENILGEEGEGFKIAMQTLDGGR 237 (373)
T ss_pred EEEEEEcCCCC--CCCceEEEEEcCCCCCeecCCcccccccCCCCceEEEeCcEEecHHHcCCCCCchHHHHHHHHHHHH
Confidence 99999865432 4467889999999999999999999999999999999999999999999998889888888889999
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHhhhhcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHH
Q psy12318 254 LVISAGPVGIMQACCDFAFNYVHERVQFGTRIGEFQLMQGKIADMHVALSASRAYLYSVAKACDRGSINSKECAGVFLVA 333 (392)
Q Consensus 254 ~~~~a~~~G~a~~al~~~~~~~~~r~~~g~~l~~~~~v~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 333 (392)
+.+++.++|+++++++.+++|+++|.+||.++.++|.+|++++++...+++++++++.+++.++.+.+.....+++|+++
T Consensus 238 ~~~~a~~lG~a~~~l~~~~~~~~~R~~~g~~~~~~~~v~~~la~~~~~l~aa~~~~~~aa~~~~~~~~~~~~~~~~k~~~ 317 (373)
T cd01158 238 IGIAAQALGIAQAALDAAVDYAKERKQFGKPIADFQGIQFKLADMATEIEAARLLTYKAARLKDNGEPFIKEAAMAKLFA 317 (373)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcccCCcHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999987665667889999999
Q ss_pred HHHHHHHHHHHHHHhcCCcccCCChHHHHHHhhccCcccCChHHHHHHHHHHHHhh
Q psy12318 334 AENAVKVALEAIQCLGGNGYINDYPTGRYLRDAKLYEIGAGTSEVRRIVIGRSINA 389 (392)
Q Consensus 334 ~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~rd~~~~~~~~g~~~~~~~~l~~~~l~ 389 (392)
++.+.++++.+++++||.||.++++++|+|||++.+.+++|++++++..+++++|+
T Consensus 318 ~~~a~~~~~~~~~~~G~~g~~~~~~l~r~~rd~~~~~~~~g~~~~~~~~i~~~~~~ 373 (373)
T cd01158 318 SEVAMRVTTDAVQIFGGYGYTKDYPVERYYRDAKITEIYEGTSEIQRLVIAKHLLK 373 (373)
T ss_pred HHHHHHHHHHHHHhhcCccCCCCChHHHHHHHhhhccccCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999875
No 18
>cd01155 ACAD_FadE2 Acyl-CoA dehydrogenases similar to fadE2. FadE2-like Acyl-CoA dehydrogenase (ACAD). Acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACAD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. ACAD's are generally homotetramers and have an active site glutamate at a conserved position.
Probab=100.00 E-value=1.1e-62 Score=472.42 Aligned_cols=375 Identities=25% Similarity=0.362 Sum_probs=332.5
Q ss_pred HHHHHHHHHHHHHhhccCchhhhhcccC-------CCCc--hHHHHHHHHhcCCCCCCCCccCCCCCCCHHHHHHHHHHH
Q psy12318 14 EQNKLRETVASYCKTHITPIAADIDSTN-------DFKD--LRKVWKDFGQLGLLGITVPEEFGGSEMGYLDHVIAMEEL 84 (392)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~--~~~~~~~l~~~Gl~~~~~p~~~GG~~~~~~~~~~~~~~l 84 (392)
.++++++.+|+|+++++.|...+.|+.+ .+|. .+++|+.++++||+++.+|++|||.|+++.++..+++++
T Consensus 2 ~~~~~~~~~r~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~P~~~GG~g~~~~~~~~v~e~l 81 (394)
T cd01155 2 KAQELRARVKAFMEEHVYPAEQEFLEYYAEGGDRWWTPPPIIEKLKAKAKAEGLWNLFLPEVSGLSGLTNLEYAYLAEET 81 (394)
T ss_pred hHHHHHHHHHHHHHHhcCccHHHHHhhcccccccccCCchhHHHHHHHHHhCCCCCCCCChhhCCCCcCHHHHHHHHHHH
Confidence 3688999999999999998766665321 1332 248999999999999999999999999999999999999
Q ss_pred HhcCC-cchhHHHhhhhhHHHHHHhcCCHHHHHHhhhHHhcCCeeEEEeecCCC-CCCCcCCceeEEEEeCCeEEEeeeE
Q psy12318 85 SRSSA-SVGLSFVAHSNLCVNQINRHATKQQKEKYLPALCSGEKIGCLAMSEPG-SGSDVISMSLKAEKKGDMYVLNGNK 162 (392)
Q Consensus 85 a~~~~-s~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~te~~-~gsd~~~~~~~a~~~~~g~~l~G~k 162 (392)
+++|. +.++....+.......+..+++++|+++|++++.+|+.++++++|||+ .|||...+.++++++++||+|||+|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tE~~~~gsd~~~~~t~a~~~~~g~~LnG~k 161 (394)
T cd01155 82 GRSFFAPEVFNCQAPDTGNMEVLHRYGSEEQKKQWLEPLLDGKIRSAFAMTEPDVASSDATNIECSIERDGDDYVINGRK 161 (394)
T ss_pred hhhcccchheeecccccccHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEeCCCCCCCCchhhCEEEEEEECCEEEEEEEE
Confidence 99863 323222222213345789999999999999999999999999999997 6899999999999999999999999
Q ss_pred eeeeCCCC--CcEEEEEEEeCCCCCCCCCceEEEEEeCCCCCccccccccccCCCC--CCcEEEEEcceeeCCCCcccCC
Q psy12318 163 FWITNGPD--ADIAVVYARTNPNADKKQHGISTFIVEKGTPGFSKGKKLNKLGMRG--SNTGELIFENCQVPAENLLGGE 238 (392)
Q Consensus 163 ~~vs~~~~--ad~~lv~a~~~~~~~~~~~~~~~~lV~~~~~Gv~~~~~~~~~G~~~--~~s~~v~f~~v~Vp~~~~l~~~ 238 (392)
.|+||+.+ +|+++|.++++++++++..++++|+||++.|||++.++|+++|+++ +++++|.|+||+||++++++.+
T Consensus 162 ~~vs~~~~~~a~~~~v~a~~~~~~~~~~~~~~~flVp~~~~Gv~i~~~~~~~G~r~~~t~s~~v~f~dv~Vp~~~~lg~~ 241 (394)
T cd01155 162 WWSSGAGDPRCKIAIVMGRTDPDGAPRHRQQSMILVPMDTPGVTIIRPLSVFGYDDAPHGHAEITFDNVRVPASNLILGE 241 (394)
T ss_pred EEEcCCCCCCCCEEEEEEEeCCCcCCCCCceEEEEEeCCCCCeEeeccccccCCCCCCCCeeEEEEccEEecHHHcCCCC
Confidence 99999955 7899999987643222345789999999999999999999999997 6789999999999999999998
Q ss_pred CccHHHHHHhhcHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q psy12318 239 NKGAYVLMSGLDLERLVISAGPVGIMQACCDFAFNYVHERVQFGTRIGEFQLMQGKIADMHVALSASRAYLYSVAKACDR 318 (392)
Q Consensus 239 ~~g~~~~~~~~~~~r~~~~a~~~G~a~~al~~~~~~~~~r~~~g~~l~~~~~v~~~la~~~~~~~~~~~~~~~~~~~~~~ 318 (392)
++|+......+...|+..++.++|+++++++.+++|+++|.+||+|+.++|.+|++|+++.+.+++++++++.+++.+++
T Consensus 242 ~~g~~~~~~~~~~~r~~~~a~~lG~a~~al~~~~~~~~~R~~fg~~i~~~q~vq~~la~~~~~l~aar~l~~~aa~~~~~ 321 (394)
T cd01155 242 GRGFEIAQGRLGPGRIHHCMRLIGAAERALELMCQRAVSREAFGKKLAQHGVVAHWIAKSRIEIEQARLLVLKAAHMIDT 321 (394)
T ss_pred ChHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCccCCCcHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 89998888889999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred CC--CChHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCChHHHHHHhhccCcccCChHHHHHHHHHHHHh
Q psy12318 319 GS--INSKECAGVFLVAAENAVKVALEAIQCLGGNGYINDYPTGRYLRDAKLYEIGAGTSEVRRIVIGRSIN 388 (392)
Q Consensus 319 ~~--~~~~~~~~~k~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~rd~~~~~~~~g~~~~~~~~l~~~~l 388 (392)
.. ......+++|+++++.+.++++.+++++||.||.++++++|+|||++.+.+++|++++++..|++.++
T Consensus 322 ~~~~~~~~~~~~aK~~~~~~a~~~~~~a~~~~Gg~g~~~~~~l~r~~Rda~~~~i~~Gt~~~~~~~ia~~~~ 393 (394)
T cd01155 322 VGNKAARKEIAMIKVAAPRMALKIIDRAIQVHGAAGVSQDTPLANMYAWARTLRIADGPDEVHLRSIARMEL 393 (394)
T ss_pred CCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCceecCCCHHHHHHHHHhhceeecCHHHHHHHHHHHHHh
Confidence 43 24577899999999999999999999999999999999999999999999999999999999999874
No 19
>PRK09463 fadE acyl-CoA dehydrogenase; Reviewed
Probab=100.00 E-value=1.2e-62 Score=493.20 Aligned_cols=372 Identities=24% Similarity=0.351 Sum_probs=332.4
Q ss_pred CCCCCCHHHHHHHHH-HHHHHhhccCchhhhhcccCCCCchHHHHHHHHhcCCCCCCCCccCCCCCCCHHHHHHHHHHHH
Q psy12318 7 TIYDLTEEQNKLRET-VASYCKTHITPIAADIDSTNDFKDLRKVWKDFGQLGLLGITVPEEFGGSEMGYLDHVIAMEELS 85 (392)
Q Consensus 7 ~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~p~~~GG~~~~~~~~~~~~~~la 85 (392)
+...|+++++.+++. +++|+. .+.. ....++.+.+|. ++|+.|++.||+++.+|++|||.|++..+...++++++
T Consensus 75 p~~~Ls~ee~~~~d~~v~~l~~-~~~~-~~~~~~~~~~P~--e~w~~L~e~G~~gl~IPeeyGG~Gls~~~~a~v~eeLg 150 (777)
T PRK09463 75 PKPTLTAEEQAFLDGPVEELCR-MVND-WQITHELADLPP--EVWQFIKEHGFFGMIIPKEYGGLEFSAYAHSRVLQKLA 150 (777)
T ss_pred CCCCCCHHHHHHHHHHHHHHHH-HHHH-HHHhccccCCCH--HHHHHHHHCCCCcCCCchhhCCCCCCHHHHHHHHHHHH
Confidence 445689999999996 888864 2211 122233468999 99999999999999999999999999999999999999
Q ss_pred hcCCcchhHHHhhhhhH-HHHHHhcCCHHHHHHhhhHHhcCCeeEEEeecCCCCCCCcCCceeE-----EEEeCC---eE
Q psy12318 86 RSSASVGLSFVAHSNLC-VNQINRHATKQQKEKYLPALCSGEKIGCLAMSEPGSGSDVISMSLK-----AEKKGD---MY 156 (392)
Q Consensus 86 ~~~~s~~~~~~~~~~~~-~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~te~~~gsd~~~~~~~-----a~~~~~---g~ 156 (392)
+.|++++..+.+|+.++ ..+|..+|+++||++|||++++|+.++|+++|||++|||..++.++ ++++++ ||
T Consensus 151 ~~~~s~a~~~~v~~slg~~~lL~~~GteeQK~~yLp~La~Ge~i~afAlTEP~aGSDaa~i~Tta~~~~a~~dGd~~~g~ 230 (777)
T PRK09463 151 SRSGTLAVTVMVPNSLGPGELLLHYGTDEQKDHYLPRLARGEEIPCFALTSPEAGSDAGSIPDTGVVCKGEWQGEEVLGM 230 (777)
T ss_pred hhCcchhHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCceeEEEecCCCcCCCcccccccceeeeeeecCCcccce
Confidence 99998887777776455 3578999999999999999999999999999999999999888754 345565 69
Q ss_pred EEeeeEeeeeCCCCCcEEEEEEEe-CCCC---CCCCCceEEEEEeCCCCCccccccccccCCCCCCcEEEEEcceeeCCC
Q psy12318 157 VLNGNKFWITNGPDADIAVVYART-NPNA---DKKQHGISTFIVEKGTPGFSKGKKLNKLGMRGSNTGELIFENCQVPAE 232 (392)
Q Consensus 157 ~l~G~k~~vs~~~~ad~~lv~a~~-~~~~---~~~~~~~~~~lV~~~~~Gv~~~~~~~~~G~~~~~s~~v~f~~v~Vp~~ 232 (392)
+|||+|.|||+++.||+++|.+++ +++. +++..++++|+||.+.|||++.+.|+++|++ ..++.+.|+||+||.+
T Consensus 231 vLNG~K~~IT~a~~Ad~l~V~ar~~dp~~~~g~~~~~Git~fLVp~d~pGV~ig~~~~~lG~r-~~~g~v~fddV~VP~d 309 (777)
T PRK09463 231 RLTWNKRYITLAPIATVLGLAFKLYDPDGLLGDKEDLGITCALIPTDTPGVEIGRRHFPLNVP-FQNGPTRGKDVFIPLD 309 (777)
T ss_pred EEEEEEEeeCCCCccCEEEEEEEecCcccccCCCCCCceEEEEEECCCCCeEecccccccCcc-cccceEEeeeeecCHH
Confidence 999999999999999999999986 3321 1245789999999999999999999999998 6789999999999999
Q ss_pred CcccCC---CccHHHHHHhhcHHH-HHHhHHHHHHHHHHHHHHHHHHHhhhhcCCCCccchhHHHHHHHHHHHHHHHHHH
Q psy12318 233 NLLGGE---NKGAYVLMSGLDLER-LVISAGPVGIMQACCDFAFNYVHERVQFGTRIGEFQLMQGKIADMHVALSASRAY 308 (392)
Q Consensus 233 ~~l~~~---~~g~~~~~~~~~~~r-~~~~a~~~G~a~~al~~~~~~~~~r~~~g~~l~~~~~v~~~la~~~~~~~~~~~~ 308 (392)
++||.+ +.|+..++..++.+| +.+++.++|+++++++.+.+|+++|+|||+|++++|.||++|++|..++++++++
T Consensus 310 ~lLG~~~~~G~G~~~l~~~L~~gR~i~laA~avG~ar~al~~Av~YA~~R~QFG~pIg~fQaVQ~~LAdma~~~~a~eaa 389 (777)
T PRK09463 310 YIIGGPKMAGQGWRMLMECLSVGRGISLPSNSTGGAKLAALATGAYARIRRQFKLPIGKFEGIEEPLARIAGNAYLMDAA 389 (777)
T ss_pred HhcccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhcHHHHHHHHHHHHHHHHHHHH
Confidence 999974 889999999999999 8999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCC--ChHHHHHHhhccCcccCChHHHHHHHH
Q psy12318 309 LYSVAKACDRGSINSKECAGVFLVAAENAVKVALEAIQCLGGNGYIND--YPTGRYLRDAKLYEIGAGTSEVRRIVI 383 (392)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~k~~~~~~a~~~~~~~~~~~Gg~g~~~~--~~l~r~~rd~~~~~~~~g~~~~~~~~l 383 (392)
.+.+++.+|.+......++++|+++++.+.+++++++|+|||.||+.+ ++++|+|||++...+++|++++++..+
T Consensus 390 r~~~a~~~D~G~~~~~~aA~AK~~atE~a~~va~~AmQIhGG~G~~~~~~~~leR~yRdari~~i~eGtn~i~r~~i 466 (777)
T PRK09463 390 RTLTTAAVDLGEKPSVLSAIAKYHLTERGRQVINDAMDIHGGKGICLGPNNFLARAYQAAPIAITVEGANILTRSLM 466 (777)
T ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhchhheeCCCCChHHHHHHhCcchheeCcHHHHHHHHH
Confidence 999999998876667789999999999999999999999999999997 999999999999999999999999876
No 20
>PRK13026 acyl-CoA dehydrogenase; Reviewed
Probab=100.00 E-value=2.2e-61 Score=482.20 Aligned_cols=367 Identities=23% Similarity=0.325 Sum_probs=322.4
Q ss_pred CCCCCHHHHHHHH-HHHHHHhhccCchhhhhcccCCCCchHHHHHHHHhcCCCCCCCCccCCCCCCCHHHHHHHHHHHHh
Q psy12318 8 IYDLTEEQNKLRE-TVASYCKTHITPIAADIDSTNDFKDLRKVWKDFGQLGLLGITVPEEFGGSEMGYLDHVIAMEELSR 86 (392)
Q Consensus 8 ~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~p~~~GG~~~~~~~~~~~~~~la~ 86 (392)
...|+++++.+.+ .++.++. .+.+. ...++.+.+|. ++|+.|++.||+++.+|++|||.|++..+...+++++++
T Consensus 75 ~~~l~~eeq~fl~~~v~~l~~-~~~e~-~~~~~~~~~P~--evw~~Lae~Gl~gl~IPeeyGGlG~s~~~~a~V~eela~ 150 (774)
T PRK13026 75 KPTLTAEEQAFIDNEVETLLT-MLDDW-DIVQNRKDLPP--EVWDYLKKEGFFALIIPKEYGGKGFSAYANSTIVSKIAT 150 (774)
T ss_pred ccccCHHHHHHHHHHHHHHHh-hhhhh-hhhhhhcCCCH--HHHHHHHHCCCCcCCCChhhCCCCCCHHHHHHHHHHHHH
Confidence 3457888888877 5677764 33222 22355678999 999999999999999999999999999999999999999
Q ss_pred cCCcchhHHHhhhhhH-HHHHHhcCCHHHHHHhhhHHhcCCeeEEEeecCCCCCCCcCCceeEEE-----EeCC---eEE
Q psy12318 87 SSASVGLSFVAHSNLC-VNQINRHATKQQKEKYLPALCSGEKIGCLAMSEPGSGSDVISMSLKAE-----KKGD---MYV 157 (392)
Q Consensus 87 ~~~s~~~~~~~~~~~~-~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~te~~~gsd~~~~~~~a~-----~~~~---g~~ 157 (392)
.|.+++..+.+|+.++ ..++..+|+++||++|||++++|+.++|+++|||++|||..++.++++ ++++ ||+
T Consensus 151 ~~~s~a~~~~v~~slg~~~lL~~~GTeEQK~~yLP~LAsGe~i~afAlTEP~aGSDaasi~Ttav~t~a~~dGd~~~gwv 230 (774)
T PRK13026 151 RSVSAAVTVMVPNSLGPGELLTHYGTQEQKDYWLPRLADGTEIPCFALTGPEAGSDAGAIPDTGIVCRGEFEGEEVLGLR 230 (774)
T ss_pred hccchHHHHHHHHHHHHHHHHHHhCCHHHHHhhhHHHhCCCeEEEEEecCCCCCCchhcccceeeeeeeeecCCccccEE
Confidence 9988887776776444 458899999999999999999999999999999999999999886654 5666 699
Q ss_pred EeeeEeeeeCCCCCcEEEEEEEe-CCCC---CCCCCceEEEEEeCCCCCccccccccccCCCCCCcEEEEEcceeeCCCC
Q psy12318 158 LNGNKFWITNGPDADIAVVYART-NPNA---DKKQHGISTFIVEKGTPGFSKGKKLNKLGMRGSNTGELIFENCQVPAEN 233 (392)
Q Consensus 158 l~G~k~~vs~~~~ad~~lv~a~~-~~~~---~~~~~~~~~~lV~~~~~Gv~~~~~~~~~G~~~~~s~~v~f~~v~Vp~~~ 233 (392)
|||+|.|||+++.||++++.++. +++. +++..++++|+||.+.|||++.++++++|++.. ++++.||||+||.++
T Consensus 231 LNG~K~~IT~A~~Ad~~~v~ar~~dpd~~~g~~~~~GiT~fLVp~d~pGV~ig~~~~~lG~~~~-~g~v~fdDV~VP~d~ 309 (774)
T PRK13026 231 LTWDKRYITLAPVATVLGLAFKLRDPDGLLGDKKELGITCALIPTDHPGVEIGRRHNPLGMAFM-NGTTRGKDVFIPLDW 309 (774)
T ss_pred EEEEEEeecCccccCEEEEEEEeeCccccccCCCCCceEEEEEECCCCCeEeeccccccccCcc-cceEEEeeeEccHHH
Confidence 99999999999999999887764 3321 124578999999999999999999999999874 589999999999999
Q ss_pred cccCC---CccHHHHHHhhcHHH-HHHhHHHHHHHHHHHHHHHHHHHhhhhcCCCCccchhHHHHHHHHHH---HHHHHH
Q psy12318 234 LLGGE---NKGAYVLMSGLDLER-LVISAGPVGIMQACCDFAFNYVHERVQFGTRIGEFQLMQGKIADMHV---ALSASR 306 (392)
Q Consensus 234 ~l~~~---~~g~~~~~~~~~~~r-~~~~a~~~G~a~~al~~~~~~~~~r~~~g~~l~~~~~v~~~la~~~~---~~~~~~ 306 (392)
+||.+ ++|+...+..++.+| +.+++.++|+++.+++.+.+|+++|+|||+|++++|.||++|++|.. .+++++
T Consensus 310 lLG~~~~~G~G~~~l~~~L~~gR~i~laA~a~G~A~~al~~Av~YA~~R~QFG~pIg~fQ~Vq~~LAdma~~~y~lEaaR 389 (774)
T PRK13026 310 IIGGPDYAGRGWRMLVECLSAGRGISLPALGTASGHMATRTTGAYAYVRRQFGMPIGQFEGVQEALARIAGNTYLLEAAR 389 (774)
T ss_pred hcCCcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHHHHHHHHH
Confidence 99975 789999999999999 89999999999999999999999999999999999999999999999 688888
Q ss_pred HHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCC--ChHHHHHHhhccCcccCChHHHHHHH
Q psy12318 307 AYLYSVAKACDRGSINSKECAGVFLVAAENAVKVALEAIQCLGGNGYIND--YPTGRYLRDAKLYEIGAGTSEVRRIV 382 (392)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~a~~~~~~~~~~~Gg~g~~~~--~~l~r~~rd~~~~~~~~g~~~~~~~~ 382 (392)
.+++.+. |.+......++++|+++++.+.+++++++|+|||.||+++ ++++|+|||++...+++|++++++..
T Consensus 390 ~l~~~a~---D~G~~~~~~aA~AK~~atE~a~~va~~AmQIhGG~Gy~~e~~~~ler~yRdari~~i~eGtnei~R~l 464 (774)
T PRK13026 390 RLTTTGL---DLGVKPSVVTAIAKYHMTELARDVVNDAMDIHAGKGIQLGPKNYLGHAYMAVPIAITVEGANILTRNL 464 (774)
T ss_pred HHHHHHH---HCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhchheeeCCCCChHHHHHHHhhhhheeCcHHHHHHHH
Confidence 8887754 5554456788999999999999999999999999999998 89999999999999999999999874
No 21
>TIGR03204 pimC_large pimeloyl-CoA dehydrogenase, large subunit. Members of this protein family are the PimC proteins of species such as Rhodopseudomonas palustris and Bradyrhizobium japonicum. The pimFABCDE operon encodes proteins for the metabolism of straight chain dicarboxylates of seven to fourteen carbons. Especially relevant is pimeloyl-CoA, basis of the gene symbol, as it is a catabolite of benzoyl-CoA degradation, which occurs in Rhodopseudomonas palustris.
Probab=100.00 E-value=2.4e-60 Score=455.41 Aligned_cols=375 Identities=25% Similarity=0.352 Sum_probs=329.0
Q ss_pred CCCCCHHHHHHHHHHHHHHhhccCchhhhh-cccCCCCc--hHHHHHHHHhcCCCCCCCCccCCCCCCCHHHHHHHHHHH
Q psy12318 8 IYDLTEEQNKLRETVASYCKTHITPIAADI-DSTNDFKD--LRKVWKDFGQLGLLGITVPEEFGGSEMGYLDHVIAMEEL 84 (392)
Q Consensus 8 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~l~~~Gl~~~~~p~~~GG~~~~~~~~~~~~~~l 84 (392)
+|.++++++++++.+++|+.+++.+...+. .+...+|. +.++|+.|.+.||+++.+|++|||.|+++.+...+++++
T Consensus 1 ~~~lteeq~~l~~~~r~f~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~e~G~~gl~vPe~~GG~G~~~~~~~~v~eel 80 (395)
T TIGR03204 1 DLAFSKEEQAFRDEVRSFFKDNVPADTRQKLVEGRHLTKDEMVTWWRILNKKGWGVSHWPKQYGGTGWTSVQHYIFNEEL 80 (395)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhCChhhhhhhhccCCCChHHHHHHHHHHHhCCCCCCCCCcccCCCCCCHHHHHHHHHHH
Confidence 588999999999999999999988765432 23334542 237999999999999999999999999999999999999
Q ss_pred HhcCCcchhHHHhhhhhHHHHHHhcCCHHHHHHhhhHHhcCCeeEEEeecCCCCCCCcCCceeEEEEeCCeEEEeeeEee
Q psy12318 85 SRSSASVGLSFVAHSNLCVNQINRHATKQQKEKYLPALCSGEKIGCLAMSEPGSGSDVISMSLKAEKKGDMYVLNGNKFW 164 (392)
Q Consensus 85 a~~~~s~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~te~~~gsd~~~~~~~a~~~~~g~~l~G~k~~ 164 (392)
++++.+.++...++ +....+..+++++|+++|||++.+|+.++++++|||++|||...+.|+++++++||+|||+|.|
T Consensus 81 g~~~~~~~~~~~~~--~~~~~l~~~g~~~q~~~~L~~i~~G~~~~~~a~tEp~~gsd~~~~~t~a~~~g~~~~LnG~K~~ 158 (395)
T TIGR03204 81 QSAPAPQPLAFGVS--MVGPVIYTFGNEEQKKRFLPRIANVDDWWCQGFSEPGSGSDLASLKTKAEKKGDKWIINGQKTW 158 (395)
T ss_pred HhcCCCccchhHhH--hhHHHHHHhCCHHHHHHHHHHHhCCchheEeEecCCCCCCChhhceEEEEEcCCEEEEeeEEEe
Confidence 99998877654432 3445788899999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCcEEEEEEEeCCCCCCCCCceEEEEEeCCCCCccccccccccCCCCCCcEEEEEcceeeCCCCcccCCCccHHH
Q psy12318 165 ITNGPDADIAVVYARTNPNADKKQHGISTFIVEKGTPGFSKGKKLNKLGMRGSNTGELIFENCQVPAENLLGGENKGAYV 244 (392)
Q Consensus 165 vs~~~~ad~~lv~a~~~~~~~~~~~~~~~~lV~~~~~Gv~~~~~~~~~G~~~~~s~~v~f~~v~Vp~~~~l~~~~~g~~~ 244 (392)
||++..||+++|.++++++. ++..++++|+||.+.|||++.+.....| ++++++|.|+||+||++++++.++.|+..
T Consensus 159 vt~a~~Ad~~lv~a~~~~~~-~~~~g~~~flV~~~~~Gv~~~~~~~~~~--~~~~~~v~f~~v~Vp~~~~lg~~~~g~~~ 235 (395)
T TIGR03204 159 TTLAQHADWIFCLCRTDPTA-KKQMGISFILVDMKSKGITVRPIQTIDG--GVEVNEVFFDDVEVPYENLVGEENKGWDY 235 (395)
T ss_pred ecCCccCCeEEEEEEeCCCC-CCCCCeEEEEEeCCCCCeEecChhhccC--CCceeEEEEcceEEcHHHcCCCCCchHHH
Confidence 99999999999999875321 1346789999999999999976555444 67889999999999999999988899998
Q ss_pred HHHhhcHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhh-CCC-CC
Q psy12318 245 LMSGLDLERLVISAGPVGIMQACCDFAFNYVHERVQFGTRIGEFQLMQGKIADMHVALSASRAYLYSVAKACD-RGS-IN 322 (392)
Q Consensus 245 ~~~~~~~~r~~~~a~~~G~a~~al~~~~~~~~~r~~~g~~l~~~~~v~~~la~~~~~~~~~~~~~~~~~~~~~-~~~-~~ 322 (392)
.+..+...|+.+++ +|+++++++.+++|+++|++||+|+.++|.+|++|+++.++++++++++++++.... .+. ..
T Consensus 236 ~~~~l~~~r~g~aa--~g~a~~~l~~a~~ya~~R~~fg~~i~~~q~vq~~la~~~~~~~aar~l~~~aa~~~~~~~~~~~ 313 (395)
T TIGR03204 236 AKFLLGNERTGIAR--VGVSKERIRRIKDLAAKVESGGKPVIEDAKFREKLAAVEIELKALELTQLRVVADEGKHGKGKP 313 (395)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhcCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 99999999998876 899999999999999999999999999999999999999999999999999975432 221 23
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH----------hcCCcccCC----ChHHHHHHhhccCcccCChHHHHHHHHHHHHh
Q psy12318 323 SKECAGVFLVAAENAVKVALEAIQC----------LGGNGYIND----YPTGRYLRDAKLYEIGAGTSEVRRIVIGRSIN 388 (392)
Q Consensus 323 ~~~~~~~k~~~~~~a~~~~~~~~~~----------~Gg~g~~~~----~~l~r~~rd~~~~~~~~g~~~~~~~~l~~~~l 388 (392)
...++++|+++++.+.++++.++|+ |||.||+++ ++++++|||++...+++|++++++..|+|.+|
T Consensus 314 ~~~aa~aK~~~~~~~~~~~~~a~q~~g~~~~~~~~~Gg~G~~~~~~~~~~~~~~~r~~~~~~i~~Gt~ei~~~~ia~~~l 393 (395)
T TIGR03204 314 NPASSVLKIKGSEIQQATTELLMEVIGPFAAPYDVHGDDGSNEAMDWTAQIAPSYFNNRKVSIYGGSNEIQRNIIAKAVL 393 (395)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccccccccccchhhhHHHHHHHhccccceeccHHHHHHHHHHHHHc
Confidence 4689999999999999999999985 788899865 47999999999999999999999999999986
Q ss_pred h
Q psy12318 389 A 389 (392)
Q Consensus 389 ~ 389 (392)
+
T Consensus 394 ~ 394 (395)
T TIGR03204 394 G 394 (395)
T ss_pred C
Confidence 4
No 22
>COG1960 CaiA Acyl-CoA dehydrogenases [Lipid metabolism]
Probab=100.00 E-value=2.7e-60 Score=456.57 Aligned_cols=382 Identities=43% Similarity=0.691 Sum_probs=351.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhccCchhhhhcc---cCCCCchHHHHHHHHhcCCCCCCCCccCCCCCCCHHHHHHHHHH
Q psy12318 7 TIYDLTEEQNKLRETVASYCKTHITPIAADIDS---TNDFKDLRKVWKDFGQLGLLGITVPEEFGGSEMGYLDHVIAMEE 83 (392)
Q Consensus 7 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~Gl~~~~~p~~~GG~~~~~~~~~~~~~~ 83 (392)
+++.+++.+.++++.+++|+.+.+.+...+.++ ...+|. ++++.+.+.|++++.+|++|||.+.+..+...++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~--~~~~~l~~~G~~~~~~p~e~GG~~~~~~~~~~~~e~ 78 (393)
T COG1960 1 MDFDLSEEQEALRAEVREFAEEELAPEAAEIDRRIEDERFPR--ELLRALAEAGLLGLTIPEEYGGLGLSPLEQAAVLEE 78 (393)
T ss_pred CCCcCCHHHHHHHHHHHHHHHHhcCcchhhhhhhcccccCHH--HHHHHHHhCCcccCCCChhhCCCCcchhHHHHHHHH
Confidence 356778999999999999999988877666664 678887 999999999999999999999999999999999999
Q ss_pred HHhcCCcchhHHHhhhh---hHHHHHHhcCCHHHHHHhhhHHhcCCeeEEEeecCCCCCCCcCCce-eEEEEeCCeEEEe
Q psy12318 84 LSRSSASVGLSFVAHSN---LCVNQINRHATKQQKEKYLPALCSGEKIGCLAMSEPGSGSDVISMS-LKAEKKGDMYVLN 159 (392)
Q Consensus 84 la~~~~s~~~~~~~~~~---~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~te~~~gsd~~~~~-~~a~~~~~g~~l~ 159 (392)
+++.+++.++.+.++.. .....+..+|+++|+++|+|++.+|+.++|+++|||++|||+.... |++++.+++|+||
T Consensus 79 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~q~~~~l~~~~~G~~~~~~~~tEp~~Gsd~~~~~~t~a~~~~g~~~ln 158 (393)
T COG1960 79 LARADAGGALALGLTHGGLGALAPTILRFGTEEQKRRYLPRLASGELIGAFALTEPGAGSDLASLRTTAAVRDDGDYVLN 158 (393)
T ss_pred HHhhCcchhhhHHHhccccccchHHHHHcCCHHHHHHhchhhhCCchhheeeccCCCCCcchhcCceeEEEecCCCEEEE
Confidence 99999988776666642 2223667899999999999999999999999999999999999987 7777767779999
Q ss_pred eeEeeeeCCCCCcEEEEEEEeCCCCCCCCCceEEEEEeCC-CCCccccccccccCCCCCCcEEEEEcceeeCCCCcccCC
Q psy12318 160 GNKFWITNGPDADIAVVYARTNPNADKKQHGISTFIVEKG-TPGFSKGKKLNKLGMRGSNTGELIFENCQVPAENLLGGE 238 (392)
Q Consensus 160 G~k~~vs~~~~ad~~lv~a~~~~~~~~~~~~~~~~lV~~~-~~Gv~~~~~~~~~G~~~~~s~~v~f~~v~Vp~~~~l~~~ 238 (392)
|+|+|+||+..||+++|.++++++. ++.+++++|+||.+ .|||++.+.|+..|+++++++.+.|+||+||.++++|.+
T Consensus 159 G~K~~is~~~~ad~~~v~Ar~~~~~-~~~~gis~flV~~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~vp~~~lig~~ 237 (393)
T COG1960 159 GQKIWISNAPVADWLLVLARTDPAP-GKHKGISLFLVPKDLTPGVSVGPILKKMGLRGSATGEVFFDDVRVPAENLLGEE 237 (393)
T ss_pred eEEEEEcCCCCCCEEEEEEEcCCcc-cccCceEEEEEeCCCCCCeeeccccCcCCcCCCCeeEEEECCeeccHHHcCCcC
Confidence 9999999999999999999987754 47789999999999 599999998875599999999999999999999999999
Q ss_pred CccHHHHHHhhcHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q psy12318 239 NKGAYVLMSGLDLERLVISAGPVGIMQACCDFAFNYVHERVQFGTRIGEFQLMQGKIADMHVALSASRAYLYSVAKACDR 318 (392)
Q Consensus 239 ~~g~~~~~~~~~~~r~~~~a~~~G~a~~al~~~~~~~~~r~~~g~~l~~~~~v~~~la~~~~~~~~~~~~~~~~~~~~~~ 318 (392)
+.|+......+...|+.+++.++|+++++++.+.+|+++|++||+++.++|.+|++|+++.+++++++.+++.+++..+.
T Consensus 238 ~~g~~~~~~~l~~~r~~~aa~~~G~a~~al~~~~~ya~~R~~fg~~i~~~~~vq~~la~~~~~~~a~r~~~~~aa~~~~~ 317 (393)
T COG1960 238 GDGFKIAMETLNVERLGIAAQALGIAEAALEEAVAYARERKQFGRPIADFQLVQFKLADMAAELEAARLLVLRAAELADA 317 (393)
T ss_pred CchHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCchhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCChHHHHHHhhccCcccCChHHHHHHHHHHHHhhhc
Q psy12318 319 GSINSKECAGVFLVAAENAVKVALEAIQCLGGNGYINDYPTGRYLRDAKLYEIGAGTSEVRRIVIGRSINAEY 391 (392)
Q Consensus 319 ~~~~~~~~~~~k~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~rd~~~~~~~~g~~~~~~~~l~~~~l~~~ 391 (392)
..+....++++|.++++.+.++++.++|++||.||+.+++++|+|||++...+++|++++++..+++.+++.+
T Consensus 318 ~~~~~~~~~~aK~~a~~~~~~~~~~a~q~~Gg~g~~~e~~i~r~~rda~~~~i~~Gt~~i~~~~i~~~~~~~~ 390 (393)
T COG1960 318 GDDAGAEAAMAKLFATEAALEVADEAVQVHGGYGYTEEYPVERYYRDARILRIYEGTSEIQRLIIARRLLGLP 390 (393)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCchHHHHHHHhHhheeccCHHHHHHHHHHHHHhhhc
Confidence 7544578999999999999999999999999999999999999999999999999999999999999998763
No 23
>cd01153 ACAD_fadE5 Putative acyl-CoA dehydrogenases similar to fadE5. Putative acyl-CoA dehydrogenase (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.
Probab=100.00 E-value=1.5e-59 Score=452.24 Aligned_cols=363 Identities=28% Similarity=0.415 Sum_probs=324.9
Q ss_pred HHHHHHHHhhccCchhhhhcccCC--------CCc-hHHHHHHHHhcCCCCCCCCccCCCCCCCHHHHHHHHHHHHhcCC
Q psy12318 19 RETVASYCKTHITPIAADIDSTND--------FKD-LRKVWKDFGQLGLLGITVPEEFGGSEMGYLDHVIAMEELSRSSA 89 (392)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~--------~~~-~~~~~~~l~~~Gl~~~~~p~~~GG~~~~~~~~~~~~~~la~~~~ 89 (392)
++.+++|+.+++.+.+.+.|++.. ||+ ..++|++|.++||+++.+|++|||.+.++.+...++++++++|+
T Consensus 2 ~~~~~~~~~~~~~~~a~~~d~~~~~~~~~~~~~p~~~~e~~~~l~~~Gl~~~~vP~e~GG~g~~~~~~~~~~e~l~~~~~ 81 (407)
T cd01153 2 LEEVARLAENVLAPLNADGDREGPVFDDGRVVVPPPFKEALDAFAEAGWMALGVPEEYGGQGLPITVYSALAEIFSRGDA 81 (407)
T ss_pred hHHHHHHHHHHhhhhHHhHhccCCcccCCceEcChhHHHHHHHHHHCCCCCCCCccccCCCCCCHHHHHHHHHHHHhhhH
Confidence 578899999999988777776654 883 13789999999999999999999999999999999999999999
Q ss_pred cchhHHHhhhhhHHHHHHhcCCHHHHHHhhhHHhcCCeeEEEeecCCCCCCCcCCceeEEEEe-CCeEEEeeeEeeeeCC
Q psy12318 90 SVGLSFVAHSNLCVNQINRHATKQQKEKYLPALCSGEKIGCLAMSEPGSGSDVISMSLKAEKK-GDMYVLNGNKFWITNG 168 (392)
Q Consensus 90 s~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~te~~~gsd~~~~~~~a~~~-~~g~~l~G~k~~vs~~ 168 (392)
++++.+..|. ....+..+++++|+++|++++.+|+.++|+++|||++|||...+.|+++++ ++||+|||+|.|+||+
T Consensus 82 s~~~~~~~~~--~~~~l~~~g~~~~~~~~l~~i~~G~~~~~~a~tEp~~gsd~~~~~t~a~~~~~ggy~l~G~K~~is~~ 159 (407)
T cd01153 82 PLMYASGTQG--AAATLLAHGTEAQREKWIPRLAEGEWTGTMCLTEPDAGSDLGALRTKAVYQADGSWRINGVKRFISAG 159 (407)
T ss_pred HHHHHHHHhH--HHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCCcccceEEEEECCCCcEEEeeEEEEEeCC
Confidence 9988776654 345678889999999999999999999999999999999999999999998 5689999999999999
Q ss_pred CCC----cEEEEEEEeCCCCCCCCCceEEEEEeCCC-----CCccccccccccCCCCCCcEEEEEcceeeCCCCcccCCC
Q psy12318 169 PDA----DIAVVYARTNPNADKKQHGISTFIVEKGT-----PGFSKGKKLNKLGMRGSNTGELIFENCQVPAENLLGGEN 239 (392)
Q Consensus 169 ~~a----d~~lv~a~~~~~~~~~~~~~~~~lV~~~~-----~Gv~~~~~~~~~G~~~~~s~~v~f~~v~Vp~~~~l~~~~ 239 (392)
.++ ++++|.+++.++. ++..++.+|+||++. |||++.+.|+++|+++++++++.|+||+|| +++.++
T Consensus 160 ~~a~~~~~~~~v~a~~~~~~-~~~~~~~~flVp~~~~~~~~~gv~i~~~~~~~G~r~t~s~~v~f~~v~Vp---~lg~~~ 235 (407)
T cd01153 160 EHDMSENIVHLVLARSEGAP-PGVKGLSLFLVPKFLDDGERNGVTVARIEEKMGLHGSPTCELVFDNAKGE---LIGEEG 235 (407)
T ss_pred CcccccccEEEEEEeCCCCC-CCCCceEEEEEeccCcCCCCCCeEeccchhccCCCCCCeEEEEEcCEEEe---eeCCCC
Confidence 886 5778888865322 134578899999987 899999999999999999999999999999 788888
Q ss_pred ccHHHHHHhhcHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhcCCC--------CccchhHHHHHHHHHHHHHHHHHHHHH
Q psy12318 240 KGAYVLMSGLDLERLVISAGPVGIMQACCDFAFNYVHERVQFGTR--------IGEFQLMQGKIADMHVALSASRAYLYS 311 (392)
Q Consensus 240 ~g~~~~~~~~~~~r~~~~a~~~G~a~~al~~~~~~~~~r~~~g~~--------l~~~~~v~~~la~~~~~~~~~~~~~~~ 311 (392)
.|+......+...|+.++++++|+++++++.+++|+++|.+||+| +.++|.+|++|+++.+++++++++++.
T Consensus 236 ~g~~~~~~~l~~~r~~~aa~~lG~a~~al~~a~~~a~~R~~fg~~i~~~~~~~~~~~~~iq~~la~~~a~~~a~~~~~~~ 315 (407)
T cd01153 236 MGLAQMFAMMNGARLGVGTQGTGLAEAAYLNALAYAKERKQGGDLIKAAPAVTIIHHPDVRRSLMTQKAYAEGSRALDLY 315 (407)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeecCCcCccccccccccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999888899999999999999999999999999999999999999 788899999999999999999999999
Q ss_pred HHHHhhCCCCC--------------hHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCChHHHHHHhhccCcccCChHH
Q psy12318 312 VAKACDRGSIN--------------SKECAGVFLVAAENAVKVALEAIQCLGGNGYINDYPTGRYLRDAKLYEIGAGTSE 377 (392)
Q Consensus 312 ~~~~~~~~~~~--------------~~~~~~~k~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~rd~~~~~~~~g~~~ 377 (392)
+++.++..... ....+++|+++++.+.++++.+++++||.||.++++++|+|||+++..+++|+++
T Consensus 316 aa~~~d~~~~~~~~~~~~~~~~~~~~~~~~~aK~~~~~~a~~v~~~a~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~Gt~~ 395 (407)
T cd01153 316 TATVQDLAERKATEGEDRKALSALADLLTPVVKGFGSEAALEAVSDAIQVHGGSGYTREYPIEQYYRDARITTIYEGTTG 395 (407)
T ss_pred HHHhccccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCceecCCCcHHHHHHhhhhheeecChHH
Confidence 99988765311 2345689999999999999999999999999999999999999999999999999
Q ss_pred HHHH-HHHHHH
Q psy12318 378 VRRI-VIGRSI 387 (392)
Q Consensus 378 ~~~~-~l~~~~ 387 (392)
+++. .+++.+
T Consensus 396 ~~~~~~~~~~~ 406 (407)
T cd01153 396 IQALDLIGRKI 406 (407)
T ss_pred HHHHHHhhccc
Confidence 8876 666654
No 24
>cd01152 ACAD_fadE6_17_26 Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26. Putative acyl-CoA dehydrogenases (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.
Probab=100.00 E-value=4.8e-60 Score=452.32 Aligned_cols=367 Identities=26% Similarity=0.397 Sum_probs=326.7
Q ss_pred HHHHHHHHHHHHHHhhccCchhhhh-----cccCCCCchHHHHHHHHhcCCCCCCCCccCCCCCCCHHHHHHHHHHHHhc
Q psy12318 13 EEQNKLRETVASYCKTHITPIAADI-----DSTNDFKDLRKVWKDFGQLGLLGITVPEEFGGSEMGYLDHVIAMEELSRS 87 (392)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~Gl~~~~~p~~~GG~~~~~~~~~~~~~~la~~ 87 (392)
++++++++.+++|+++++.|..... ++...+|. ++++.|++.||+++.+|++|||.+.++.+...+++++++.
T Consensus 1 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~Gl~~l~vP~~~GG~g~~~~~~~~~~e~l~~~ 78 (380)
T cd01152 1 PSEEAFRAEVRAWLAAHLPPELREESALGYREGREDRR--RWQRALAAAGWAAPGWPKEYGGRGASLMEQLIFREEMAAA 78 (380)
T ss_pred CcHHHHHHHHHHHHHhcCCccccccccccccccchHHH--HHHHHHHhCCCCccCCChhhCCCCCCHHHHHHHHHHHHhc
Confidence 3578999999999999998864322 34456888 9999999999999999999999999999999999999999
Q ss_pred CCcchhHHHhhhhhHHHHHHhcCCHHHHHHhhhHHhcCCeeEEEeecCCCCCCCcCCceeEEEEeCCeEEEeeeEeeeeC
Q psy12318 88 SASVGLSFVAHSNLCVNQINRHATKQQKEKYLPALCSGEKIGCLAMSEPGSGSDVISMSLKAEKKGDMYVLNGNKFWITN 167 (392)
Q Consensus 88 ~~s~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~te~~~gsd~~~~~~~a~~~~~g~~l~G~k~~vs~ 167 (392)
|+++++.+..+. .+...+..+++++|+++|++++.+|+.++++++|||++|||...+.++++++++||+|||+|.|+|+
T Consensus 79 ~~~~~~~~~~~~-~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~~g~~L~G~K~~it~ 157 (380)
T cd01152 79 GAPVPFNQIGID-LAGPTILAYGTDEQKRRFLPPILSGEEIWCQGFSEPGAGSDLAGLRTRAVRDGDDWVVNGQKIWTSG 157 (380)
T ss_pred CCCcccchhhHH-HHHHHHHHhCCHHHHHHHhHHHhCCchhheeecCCCCCCcchhhCeeeEEEcCCeEEEecEEEEEcC
Confidence 999887622333 4556788999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcEEEEEEEeCCCCCCCCCceEEEEEeCCCCCccccccccccCCCCCCcEEEEEcceeeCCCCcccCCCccHHHHHH
Q psy12318 168 GPDADIAVVYARTNPNADKKQHGISTFIVEKGTPGFSKGKKLNKLGMRGSNTGELIFENCQVPAENLLGGENKGAYVLMS 247 (392)
Q Consensus 168 ~~~ad~~lv~a~~~~~~~~~~~~~~~~lV~~~~~Gv~~~~~~~~~G~~~~~s~~v~f~~v~Vp~~~~l~~~~~g~~~~~~ 247 (392)
++++|+++|.+++++++ ++..++.+|+||++.|||++.+.|+++| +++++++.|+||+||.+++++.+++|+.....
T Consensus 158 ~~~ad~~lv~a~~~~~~-~~~~~~~~~lVp~~~~Gv~~~~~~~~~g--~~~~~~l~f~~v~Vp~~~~lg~~~~g~~~~~~ 234 (380)
T cd01152 158 AHYADWAWLLVRTDPEA-PKHRGISILLVDMDSPGVTVRPIRSING--GEFFNEVFLDDVRVPDANRVGEVNDGWKVAMT 234 (380)
T ss_pred ccccCEEEEEEEeCCCc-cCcCCeEEEEEeCCCCceEeeehhhccC--CCCcceEEecCcCcchhcccCCCCchHHHHHH
Confidence 99999999999976432 1345789999999999999999998888 67889999999999999999999889888888
Q ss_pred hhcHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChHHHH
Q psy12318 248 GLDLERLVISAGPVGIMQACCDFAFNYVHERVQFGTRIGEFQLMQGKIADMHVALSASRAYLYSVAKACDRGSINSKECA 327 (392)
Q Consensus 248 ~~~~~r~~~~a~~~G~a~~al~~~~~~~~~r~~~g~~l~~~~~v~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (392)
.+...|+.+++.+.| +++.+++|+++|.++|+|+.++|.+|++|+++.+++++++++++.+++.++++......++
T Consensus 235 ~l~~~r~~~~~~~~~----~~~~a~~~a~~r~~~g~~l~~~~~vq~~la~~~~~l~~a~~l~~~aa~~~~~~~~~~~~~a 310 (380)
T cd01152 235 TLNFERVSIGGSAAT----FFELLLARLLLLTRDGRPLIDDPLVRQRLARLEAEAEALRLLVFRLASALAAGKPPGAEAS 310 (380)
T ss_pred HHHhcccccchhhhH----HHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHH
Confidence 888888776655444 4556677888889999999999999999999999999999999999999987765567789
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcccCC--------ChHHHHHHhhccCcccCChHHHHHHHHHHHHhh
Q psy12318 328 GVFLVAAENAVKVALEAIQCLGGNGYIND--------YPTGRYLRDAKLYEIGAGTSEVRRIVIGRSINA 389 (392)
Q Consensus 328 ~~k~~~~~~a~~~~~~~~~~~Gg~g~~~~--------~~l~r~~rd~~~~~~~~g~~~~~~~~l~~~~l~ 389 (392)
++|+++++.+.++++.+++++||.||.++ ++++|+|||++.+.+++|++++++..|++.+++
T Consensus 311 ~aK~~~~~~a~~v~~~a~~i~Gg~g~~~~~~~~~~~~~~~~r~~rd~~~~~~~~g~~~~~~~~i~~~~~~ 380 (380)
T cd01152 311 IAKLFGSELAQELAELALELLGTAALLRDPAPGAELAGRWEADYLRSRATTIYGGTSEIQRNIIAERLLG 380 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCccccccccccccccccHHHHHHHhCccceeeccHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999988 699999999999999999999999999998875
No 25
>PLN02876 acyl-CoA dehydrogenase
Probab=100.00 E-value=6.4e-59 Score=481.33 Aligned_cols=382 Identities=24% Similarity=0.330 Sum_probs=338.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhhccCchhhhhccc-------CCCC-chHHHHHHHH-hcCCCCCCCCcc----------
Q psy12318 6 DTIYDLTEEQNKLRETVASYCKTHITPIAADIDST-------NDFK-DLRKVWKDFG-QLGLLGITVPEE---------- 66 (392)
Q Consensus 6 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~-~~~~~~~~l~-~~Gl~~~~~p~~---------- 66 (392)
...|.+++++.++++.+++|+.+++.|...+.++. ..+| . +.|+.+. +.||+++.+|++
T Consensus 397 ~~~~~~s~~~~~l~~~~~~f~~~~~~p~~~~~~~~~~~~~~~~~~p~~--~~~~~~~~~~G~~~~~~p~~~~~~~~~~~~ 474 (822)
T PLN02876 397 SGRFVPSEKVLELRKKLIKFMEDHIYPMENEFYKLAQSSSRWTVHPEE--ERLKELAKKEGLWNLWIPLDSAARARKLLF 474 (822)
T ss_pred cCCcCCCHHHHHHHHHHHHHHHHHccCccHHHHhhcccccccccCcch--HHHHHHHHHcCcccCCCCchhhhhhhhccc
Confidence 34588899999999999999999988765554421 1377 5 6777775 999999999995
Q ss_pred --------------CCCCCCCHHHHHHHHHHHHhcCCcch-hHHHhhhhhHHHHHHhcCCHHHHHHhhhHHhcCCeeEEE
Q psy12318 67 --------------FGGSEMGYLDHVIAMEELSRSSASVG-LSFVAHSNLCVNQINRHATKQQKEKYLPALCSGEKIGCL 131 (392)
Q Consensus 67 --------------~GG~~~~~~~~~~~~~~la~~~~s~~-~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~ 131 (392)
|||.|+++.+...++|++++++.+.. +....+....+..+..+|+++||++||+++++|+.++|+
T Consensus 475 ~~~~~~~~~~~~~~~GG~G~~~~~~~~~~Eelg~~~~~~~~~~~~~~~~~~~~~l~~~gt~eqk~~~L~~l~~G~~~~~~ 554 (822)
T PLN02876 475 EDNKHMVSGDSADQLLGAGLSNLEYGYLCEIMGRSVWAPQVFNCGAPDTGNMEVLLRYGNKEQQLEWLIPLLEGKIRSGF 554 (822)
T ss_pred ccccccccccccccCCCCCCCHHHHHHHHHHHhccchHHHHhcccCcccccHHHHHHhCCHHHHHHHHHHHhCCCceeEE
Confidence 99999999999999999999865422 212223223445788999999999999999999999999
Q ss_pred eecCCC-CCCCcCCceeEEEEeCCeEEEeeeEeeeeCC--CCCcEEEEEEEeCCCCCCCCCceEEEEEeCCCCCcccccc
Q psy12318 132 AMSEPG-SGSDVISMSLKAEKKGDMYVLNGNKFWITNG--PDADIAVVYARTNPNADKKQHGISTFIVEKGTPGFSKGKK 208 (392)
Q Consensus 132 a~te~~-~gsd~~~~~~~a~~~~~g~~l~G~k~~vs~~--~~ad~~lv~a~~~~~~~~~~~~~~~~lV~~~~~Gv~~~~~ 208 (392)
++|||+ +|||..++.|+++++++||+|||+|.|+||+ +.+|+++|.++++++. ++..++++|+||.+.|||++.++
T Consensus 555 a~tEp~~~gsd~~~~~t~a~~~g~g~vLnG~K~~vtga~~~~ad~~lv~ar~~~~~-~~~~~~s~flV~~~~pGv~i~~~ 633 (822)
T PLN02876 555 AMTEPQVASSDATNIECSIRRQGDSYVINGTKWWTSGAMDPRCRVLIVMGKTDFNA-PKHKQQSMILVDIQTPGVQIKRP 633 (822)
T ss_pred EecCCCccCcccccceEEEEEcCCEEEEEeEEEEecCCCCCCCCEEEEEEecCCCC-CCCCcceEEEEeCCCCCceeecc
Confidence 999997 6899999999999999999999999999999 5799999999875432 13456889999999999999999
Q ss_pred ccccCCCCC--CcEEEEEcceeeCCCCcccCCCccHHHHHHhhcHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhcCCCCc
Q psy12318 209 LNKLGMRGS--NTGELIFENCQVPAENLLGGENKGAYVLMSGLDLERLVISAGPVGIMQACCDFAFNYVHERVQFGTRIG 286 (392)
Q Consensus 209 ~~~~G~~~~--~s~~v~f~~v~Vp~~~~l~~~~~g~~~~~~~~~~~r~~~~a~~~G~a~~al~~~~~~~~~r~~~g~~l~ 286 (392)
|+++|++++ ++++|.||||+||.+++++.+++|+......++.+|+.+++.++|+++++++.+++|+++|++||+|+.
T Consensus 634 ~~~~G~r~~~~~~~~v~fd~V~Vp~~~~lg~~g~g~~~~~~~l~~~r~~~aa~~vG~a~~ale~a~~ya~~R~~fg~~i~ 713 (822)
T PLN02876 634 LLVFGFDDAPHGHAEISFENVRVPAKNILLGEGRGFEIAQGRLGPGRLHHCMRLIGAAERGMQLMVQRALSRKAFGKLIA 713 (822)
T ss_pred cceeccCCCCCCeeEEEEcceeechhheecCCCchHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchh
Confidence 999999984 578999999999999999988889988888899999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC--CChHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCChHHHHHH
Q psy12318 287 EFQLMQGKIADMHVALSASRAYLYSVAKACDRGS--INSKECAGVFLVAAENAVKVALEAIQCLGGNGYINDYPTGRYLR 364 (392)
Q Consensus 287 ~~~~v~~~la~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~k~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~r 364 (392)
++|.+|++|+++.+.+++++++++.+++.+++.. .....++++|+++++.+.++++.++|++||.||+++++++|+||
T Consensus 714 ~~q~vq~~la~~~~~leaar~l~~~aa~~~d~~~~~~~~~~~a~aK~~a~e~a~~va~~a~qv~Gg~G~~~e~~l~r~~R 793 (822)
T PLN02876 714 QHGSFLSDLAKCRVELEQTRLLVLEAADQLDRLGNKKARGIIAMAKVAAPNMALKVLDMAMQVHGAAGVSSDTVLAHLWA 793 (822)
T ss_pred hCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCCcchHHHHHH
Confidence 9999999999999999999999999999998732 24567899999999999999999999999999999999999999
Q ss_pred hhccCcccCChHHHHHHHHHHHHhhh
Q psy12318 365 DAKLYEIGAGTSEVRRIVIGRSINAE 390 (392)
Q Consensus 365 d~~~~~~~~g~~~~~~~~l~~~~l~~ 390 (392)
|++...+++|++++++..|+|.++++
T Consensus 794 dar~~~i~~Gt~e~~~~~ia~~~~~~ 819 (822)
T PLN02876 794 TARTLRIADGPDEVHLGTIAKLELQR 819 (822)
T ss_pred hhhhcccccChHHHHHHHHHHHHHHh
Confidence 99999999999999999999999875
No 26
>KOG0138|consensus
Probab=100.00 E-value=6.1e-59 Score=399.05 Aligned_cols=371 Identities=30% Similarity=0.508 Sum_probs=351.5
Q ss_pred CCCHHHHHHHHHHHHHHhhccCchhhhhcccCCCCchHHHHHHHHhcCCCCCCCCccCCCCCCCHHHHHHHHHHHHhcCC
Q psy12318 10 DLTEEQNKLRETVASYCKTHITPIAADIDSTNDFKDLRKVWKDFGQLGLLGITVPEEFGGSEMGYLDHVIAMEELSRSSA 89 (392)
Q Consensus 10 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~p~~~GG~~~~~~~~~~~~~~la~~~~ 89 (392)
+|+++++.+++.+|.+|++.+.|...+..+...||. ++..+|...|+++..+. .||..|+|...+..+.+|+.+.|.
T Consensus 54 qLT~dE~air~~~Reycq~~l~Prvtea~r~e~F~~--~i~pemGsmGvlG~tik-GYGCaG~S~vaygl~~rEveRVDs 130 (432)
T KOG0138|consen 54 QLTEDEIAIRDTFREYCQERLMPRVTEANRNEVFDR--EIIPEMGSMGVLGPTIK-GYGCAGVSSVAYGLLAREVERVDS 130 (432)
T ss_pred hcCHHHHHHHHHHHHHHHHHhhhHHHHHhhhccCCh--hhhhhhhccccccCccc-CcCCCchHHHHHHHHHHHHHHhhh
Confidence 689999999999999999999999999999999999 99999999999998876 599999999999999999999999
Q ss_pred cchhHHHhhhhhHHHHHHhcCCHHHHHHhhhHHhcCCeeEEEeecCCCCCCCcCCceeEEEEeCCe--EEEeeeEeeeeC
Q psy12318 90 SVGLSFVAHSNLCVNQINRHATKQQKEKYLPALCSGEKIGCLAMSEPGSGSDVISMSLKAEKKGDM--YVLNGNKFWITN 167 (392)
Q Consensus 90 s~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~te~~~gsd~~~~~~~a~~~~~g--~~l~G~k~~vs~ 167 (392)
+.-....+|..++..+|..+|+++||++|||.+++|+.++||++|||.+|||+.+..|+|++++.+ |.|||.|.||+|
T Consensus 131 ~yrs~~sVqsSL~m~~Iy~~GSE~QkqkYlPslA~g~~igcfgLTEPn~GSdpsgmeT~At~~e~~ktyklNGsKtWI~n 210 (432)
T KOG0138|consen 131 GYRSAMSVQSSLVMGPIYAYGSEEQKQKYLPSLAKGKLIGCFGLTEPNHGSDPSGMETRATYDESNKTYKLNGSKTWITN 210 (432)
T ss_pred hchhhhhhhhhhhhhhHhhcCCHHHHhhhhhhhhcCceeeEEeccCCCCCCCcccccceeEEccCCceEEECCeeeeecC
Confidence 998889999989999999999999999999999999999999999999999999999999999887 999999999999
Q ss_pred CCCCcEEEEEEEeCCCCCCCCCceEEEEEeCCCCCccccccccccCCCCCCcEEEEEcceeeCCCCcccCCCccHHHHHH
Q psy12318 168 GPDADIAVVYARTNPNADKKQHGISTFIVEKGTPGFSKGKKLNKLGMRGSNTGELIFENCQVPAENLLGGENKGAYVLMS 247 (392)
Q Consensus 168 ~~~ad~~lv~a~~~~~~~~~~~~~~~~lV~~~~~Gv~~~~~~~~~G~~~~~s~~v~f~~v~Vp~~~~l~~~~~g~~~~~~ 247 (392)
++.||+++|+|+..-+ ..+.-|+|+++.+|.+......++++|++.++.+.+|||+||++++|.... ++..-..
T Consensus 211 sp~aDl~vvwAr~~t~-----n~I~GFi~~k~~~GL~apkI~gK~sLRas~tG~Ilmd~V~VPeE~~LPg~~-s~qgpf~ 284 (432)
T KOG0138|consen 211 SPMADLFVVWARCETD-----NKIRGFILEKGMRGLSAPKIEGKFSLRASATGMILMDGVEVPEENLLPGAS-SLQGPFG 284 (432)
T ss_pred CcccceEEEEEecccC-----CceeeEEEecCCCCCcCCCcCCeeeeeecccCceeecCCcCChhhcCCCcc-ccCCchh
Confidence 9999999999998733 467779999999999998888999999999999999999999999996432 4444567
Q ss_pred hhcHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChHHHH
Q psy12318 248 GLDLERLVISAGPVGIMQACCDFAFNYVHERVQFGTRIGEFQLMQGKIADMHVALSASRAYLYSVAKACDRGSINSKECA 327 (392)
Q Consensus 248 ~~~~~r~~~~a~~~G~a~~al~~~~~~~~~r~~~g~~l~~~~~v~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (392)
+++..|.+++...+|+++.+++.+.+|...|+|||.|++.+|.+|.+|++|..++...-..+++..+..|.+.-....++
T Consensus 285 cLnnaR~giAWg~lGase~c~~~arqY~ldRkQFG~PLAanQL~Q~Kladmltei~lgl~~clrl~rLkd~g~~tp~qiS 364 (432)
T KOG0138|consen 285 CLNNARYGIAWGALGASEFCLHTARQYTLDRKQFGRPLAANQLIQKKLADMLTEITLGLQACLRLGRLKDQGKATPEQIS 364 (432)
T ss_pred hhhhhhhheeehhchhHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCChhhhH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999888889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcccCCChHHHHHHhhccCcccCChHHHHHHHHHHHHhh
Q psy12318 328 GVFLVAAENAVKVALEAIQCLGGNGYINDYPTGRYLRDAKLYEIGAGTSEVRRIVIGRSINA 389 (392)
Q Consensus 328 ~~k~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~rd~~~~~~~~g~~~~~~~~l~~~~l~ 389 (392)
+.|.+.+..+.++++.+.+++||.|+..++.+.|++-|+....+|+|+.+++...++|.+.+
T Consensus 365 l~Krn~~gKaleiAr~~RdmLGgNGI~deyhv~rh~~nLE~vnTYEGThDihaLilGRaiTG 426 (432)
T KOG0138|consen 365 LLKRNNCGKALEIARQARDMLGGNGISDEYHVIRHAMNLEAVNTYEGTHDIHALILGRAITG 426 (432)
T ss_pred HHhhccchhHHHHHHHHHHHhcCCcchhHHHHHHHHcCccceecccccchHHHHhhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999865
No 27
>PTZ00456 acyl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=1e-57 Score=453.09 Aligned_cols=372 Identities=25% Similarity=0.333 Sum_probs=326.2
Q ss_pred CHHHHHHHHHHHHHHhhccCchhhhhcccCCC---------Cc-hHHHHHHHHhcCCCCCCCCccCCCCCCCHHHHHHHH
Q psy12318 12 TEEQNKLRETVASYCKTHITPIAADIDSTNDF---------KD-LRKVWKDFGQLGLLGITVPEEFGGSEMGYLDHVIAM 81 (392)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~-~~~~~~~l~~~Gl~~~~~p~~~GG~~~~~~~~~~~~ 81 (392)
.+...++++.+++|+.+.+.|...+.|+++.+ |. ++++|+.+.+.||+++.+|++|||.|++......+.
T Consensus 57 ~~~~~~il~~a~~fa~~~~~p~~~~~D~~~~~~~~~g~v~~p~g~~e~~~~l~e~G~~~l~~Pee~GG~Gl~~~~~~~~~ 136 (622)
T PTZ00456 57 KELMDSLLEEASKLATQTLLPLYESSDSEGCVLLKDGNVTTPKGFKEAYQALKAGGWTGISEPEEYGGQALPLSVGFITR 136 (622)
T ss_pred HHHHHHHHHHHHHHHHHhcccchhhHhhccCccccCCcccCChhHHHHHHHHHHcCCCCCCCCcccCCCCcCHHHHHHHH
Confidence 46677999999999999999987777765432 42 358999999999999999999999999987555555
Q ss_pred HHHHhcCCcchhHHHhhhhhHHHHHHhcCCHHHHHHhhhHHhcCCeeEEEeecCCCCCCCcCCceeEEEEeCC-eEEEee
Q psy12318 82 EELSRSSASVGLSFVAHSNLCVNQINRHATKQQKEKYLPALCSGEKIGCLAMSEPGSGSDVISMSLKAEKKGD-MYVLNG 160 (392)
Q Consensus 82 ~~la~~~~s~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~te~~~gsd~~~~~~~a~~~~~-g~~l~G 160 (392)
+.+++.+++++.....+. .+...|..+|+++||++|||++.+|++++++++|||++|||+..+.|+++++++ +|+|||
T Consensus 137 E~~~~a~~~~~~~~~l~~-ga~~~L~~~Gs~eqk~~~Lp~l~sGe~~~t~alTEp~aGSD~~~l~T~A~~~gdG~y~L~G 215 (622)
T PTZ00456 137 ELMATANWGFSMYPGLSI-GAANTLMAWGSEEQKEQYLTKLVSGEWSGTMCLTEPQCGTDLGQVKTKAEPSADGSYKITG 215 (622)
T ss_pred HHHHHhchHHHHHHHHHH-HHHHHHHHhCCHHHHHHHHHHHhcCChhhhhhccCCccCCCcccCeeEEEECCCCcEEEee
Confidence 556777777554433333 445688999999999999999999999999999999999999999999999987 499999
Q ss_pred eEeeeeCCCCC----cEEEEEEEeCCCCCCCCCceEEEEEeCCC----------CCccccccccccCCCCCCcEEEEEcc
Q psy12318 161 NKFWITNGPDA----DIAVVYARTNPNADKKQHGISTFIVEKGT----------PGFSKGKKLNKLGMRGSNTGELIFEN 226 (392)
Q Consensus 161 ~k~~vs~~~~a----d~~lv~a~~~~~~~~~~~~~~~~lV~~~~----------~Gv~~~~~~~~~G~~~~~s~~v~f~~ 226 (392)
+|.|||++.++ ++++|+|+++++. ++.+++++|+||++. +||++.+..+++|+++++++.|.|+|
T Consensus 216 ~K~fIt~g~~~~~~n~~~lVlAr~~~~~-~g~~GiSlFlVp~~~~~~~G~~~~~~gv~~~~~~~kmG~~gs~t~~l~fd~ 294 (622)
T PTZ00456 216 TKIFISAGDHDLTENIVHIVLARLPNSL-PTTKGLSLFLVPRHVVKPDGSLETAKNVKCIGLEKKMGIKGSSTCQLSFEN 294 (622)
T ss_pred EEEEecCCchhhccCcEEEEEEEecCCC-CCCCceEEEEEeCCCCCcCCCccCCCCeeecCcccccCCCCCceEEEEeeC
Confidence 99999999873 6789999986432 266899999999864 46777788899999999999999999
Q ss_pred eeeCCCCcccCCCccHHHHHHhhcHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhc------------CCCCccchhHHHH
Q psy12318 227 CQVPAENLLGGENKGAYVLMSGLDLERLVISAGPVGIMQACCDFAFNYVHERVQF------------GTRIGEFQLMQGK 294 (392)
Q Consensus 227 v~Vp~~~~l~~~~~g~~~~~~~~~~~r~~~~a~~~G~a~~al~~~~~~~~~r~~~------------g~~l~~~~~v~~~ 294 (392)
|.++++|.+++|+..+...++..|+.+++.++|+++++++.+++|+++|+|| +++|+++|.||++
T Consensus 295 ---~~~~llG~~~~Gl~~~~~~mn~aRl~vaa~~lG~a~~Al~~Al~YAk~R~Qfr~~~~~~~~~~~~~~I~~~~~Vr~~ 371 (622)
T PTZ00456 295 ---SVGYLIGEPNAGMKQMFTFMNTARVGTALEGVCHAELAFQNALRYARERRSMRALSGTKEPEKPADRIICHANVRQN 371 (622)
T ss_pred ---hhHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccccccccccCCCCccccCHHHHHH
Confidence 4689999999999999999999999999999999999999999999999984 6789999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCC---C----------ChHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCChHHH
Q psy12318 295 IADMHVALSASRAYLYSVAKACDRGS---I----------NSKECAGVFLVAAENAVKVALEAIQCLGGNGYINDYPTGR 361 (392)
Q Consensus 295 la~~~~~~~~~~~~~~~~~~~~~~~~---~----------~~~~~~~~k~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l~r 361 (392)
|+++.+.+++++++++.+++.+|... + .....+++|.++++.+.++++.++|++||.||+++++++|
T Consensus 372 L~~~~a~~eaaral~~~aA~~~D~~~~~~~~~~~~~~~~~~~~~t~iaK~~~te~a~~va~~aiQv~GG~Gy~~e~~ler 451 (622)
T PTZ00456 372 ILFAKAVAEGGRALLLDVGRLLDIHAAAKDAATREALDHEIGFYTPIAKGCLTEWGVEAASRCLQVWGGHGYIKGNGMEQ 451 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccccchhhHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCCCccCCchHHH
Confidence 99999999999999999999988642 1 1235779999999999999999999999999999999999
Q ss_pred HHHhhccCcccCChHHHHH-HHHHHHHh
Q psy12318 362 YLRDAKLYEIGAGTSEVRR-IVIGRSIN 388 (392)
Q Consensus 362 ~~rd~~~~~~~~g~~~~~~-~~l~~~~l 388 (392)
+|||++...+++|++++++ +.|+|.++
T Consensus 452 ~~RDari~~i~eGt~~iq~~dli~rkll 479 (622)
T PTZ00456 452 ILRDARIGTLYEGTTGIQALDFIGRKVL 479 (622)
T ss_pred HHHHhhcccccCChHHHHHHHHHHHHhh
Confidence 9999999999999999997 59999987
No 28
>PLN02636 acyl-coenzyme A oxidase
Probab=100.00 E-value=3.3e-58 Score=460.61 Aligned_cols=374 Identities=22% Similarity=0.320 Sum_probs=333.4
Q ss_pred CCCHHHHHHHHHHHHHHhhc--c-CchhhhhcccCCCC-chHHHHHHHHhcCCCCCCCCccCCCCCCCHHHHHHHHHHHH
Q psy12318 10 DLTEEQNKLRETVASYCKTH--I-TPIAADIDSTNDFK-DLRKVWKDFGQLGLLGITVPEEFGGSEMGYLDHVIAMEELS 85 (392)
Q Consensus 10 ~l~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~-~~~~~~~~l~~~Gl~~~~~p~~~GG~~~~~~~~~~~~~~la 85 (392)
.+++++.++++.+++|+.+. + .+.....++.+.++ . ++++.+.+.|++++.+|++ ++.++..++++++
T Consensus 60 ~l~~~~~~~r~~v~~~~~~~~~~~~~~~~~~~~~~e~~~~--~l~~~~~~~g~~~~~~~~~------~~~~~~~~~e~l~ 131 (686)
T PLN02636 60 YMRGKHRDIQEKIYEFFNSRPDLQTPVEISKDEHRELCMR--QLTGLVREAGIRPMKYLVE------DPAKYFAITEAVG 131 (686)
T ss_pred hcCCcHHHHHHHHHHHHHhCccccCCchhhHHHhhhhHHH--HHHHHHHhcCccccccccC------CHHHHHHHHHHHH
Confidence 36777889999999998766 3 45555556556666 5 8889999999999999975 8899999999999
Q ss_pred hcCCcchhHHHhhhhhHHHHHHhcCCHHHHHHhhhHHhcCCeeEEEeecCCCCCCCcCCceeEEEEe--CCeEEEe----
Q psy12318 86 RSSASVGLSFVAHSNLCVNQINRHATKQQKEKYLPALCSGEKIGCLAMSEPGSGSDVISMSLKAEKK--GDMYVLN---- 159 (392)
Q Consensus 86 ~~~~s~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~te~~~gsd~~~~~~~a~~~--~~g~~l~---- 159 (392)
+.|++++..+.+|..++...|..+|+++|+++|||++.+|+.++|+++|||++|||+.+++|+|+++ +++|+||
T Consensus 132 ~~d~s~~~~~~vh~~l~~~~I~~~GTeeQk~~~L~~~~~ge~ig~fA~TEpghGSdv~~leTtA~~d~~~defVLntP~~ 211 (686)
T PLN02636 132 SVDMSLGIKLGVQYSLWGGSVINLGTKKHRDKYFDGIDNLDYPGCFAMTELHHGSNVQGLQTTATFDPLTDEFVINTPND 211 (686)
T ss_pred hhchhhHHHHHhhhhhHHHHHHHhCCHHHHHHHHHHHhCCChhhhhhccCCCcccCcccCeeEEEEcCCCCeEEECCCCC
Confidence 9999988888888778888999999999999999999999999999999999999999999999998 7889999
Q ss_pred -eeEeeeeCCCC-CcEEEEEEEeCCCC----CCCCCceEEEEEeCC-------CCCccccccccccCCCCCCcEEEEEcc
Q psy12318 160 -GNKFWITNGPD-ADIAVVYARTNPNA----DKKQHGISTFIVEKG-------TPGFSKGKKLNKLGMRGSNTGELIFEN 226 (392)
Q Consensus 160 -G~k~~vs~~~~-ad~~lv~a~~~~~~----~~~~~~~~~~lV~~~-------~~Gv~~~~~~~~~G~~~~~s~~v~f~~ 226 (392)
|.|+|++|+.. ||+++|+|++..++ +++..|+.+|+||.+ .|||++.+...++|+++.+++.|.|||
T Consensus 212 ~g~K~wI~na~~~ad~~vV~Arl~~~~~~~~~~~~~Gi~~FlVp~r~~~~~~~~PGV~v~~~~~K~G~~g~dng~l~Fdn 291 (686)
T PLN02636 212 GAIKWWIGNAAVHGKFATVFARLKLPTHDSKGVSDMGVHAFIVPIRDMKTHQVLPGVEIRDCGHKVGLNGVDNGALRFRS 291 (686)
T ss_pred CeEEEeecCCcccCCEEEEEEEecCCCCCccCCCCCCeeEEEEecCccccCCCCCCeEeccCCCccCCCCCcceEEEEee
Confidence 99999999975 99999999986321 113578999999987 599999999999999999999999999
Q ss_pred eeeCCCCcccC----------------CCccHHHHHHhhcHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhcCCC------
Q psy12318 227 CQVPAENLLGG----------------ENKGAYVLMSGLDLERLVISAGPVGIMQACCDFAFNYVHERVQFGTR------ 284 (392)
Q Consensus 227 v~Vp~~~~l~~----------------~~~g~~~~~~~~~~~r~~~~a~~~G~a~~al~~~~~~~~~r~~~g~~------ 284 (392)
|+||.+++|+. +++|+......+..+|+.+++.++|++++|++.+++|+..|+|||.|
T Consensus 292 VrVP~~nlLg~~g~v~~~G~y~~~~~~~~~gf~~~~~~l~~~R~~iaa~a~g~a~~Al~iAvrYa~~R~qFg~p~~~e~~ 371 (686)
T PLN02636 292 VRIPRDNLLNRFGDVSRDGKYTSSLPTINKRFAATLGELVGGRVGLAYGSVGVLKASNTIAIRYSLLRQQFGPPKQPEIS 371 (686)
T ss_pred EEECHHHhccccccccCCCcccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCEeCCCCCCCCCc
Confidence 99999999953 25688888899999999999999999999999999999999999999
Q ss_pred CccchhHHHHHHHHHHHHHHHH----HHHHHHHHHhhCCC-----CChHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccC
Q psy12318 285 IGEFQLMQGKIADMHVALSASR----AYLYSVAKACDRGS-----INSKECAGVFLVAAENAVKVALEAIQCLGGNGYIN 355 (392)
Q Consensus 285 l~~~~~v~~~la~~~~~~~~~~----~~~~~~~~~~~~~~-----~~~~~~~~~k~~~~~~a~~~~~~~~~~~Gg~g~~~ 355 (392)
|.++|.+|++|+++.+.+++++ .+++.+++..+.++ +....++++|+++++.+.+++++++|+|||.||+.
T Consensus 372 I~d~q~vQ~~La~~la~~~a~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~as~aK~~~t~~a~~~~~~~rq~~GG~Gy~~ 451 (686)
T PLN02636 372 ILDYQSQQHKLMPMLASTYAFHFATEYLVERYSEMKKTHDDQLVADVHALSAGLKAYITSYTAKALSTCREACGGHGYAA 451 (686)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccC
Confidence 9999999999999999999954 66666666555433 24567899999999999999999999999999999
Q ss_pred CChHHHHHHhhccCcccCChHHHHHHHHHHHHhhhc
Q psy12318 356 DYPTGRYLRDAKLYEIGAGTSEVRRIVIGRSINAEY 391 (392)
Q Consensus 356 ~~~l~r~~rd~~~~~~~~g~~~~~~~~l~~~~l~~~ 391 (392)
+++++++|||++...+++|++++++.+++|.+++.|
T Consensus 452 ~~~l~~l~rd~~~~~t~EG~n~Vl~~~iAr~ll~~~ 487 (686)
T PLN02636 452 VNRFGSLRNDHDIFQTFEGDNTVLLQQVAADLLKQY 487 (686)
T ss_pred cCcHHHHHHHhhhheeecChHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998764
No 29
>cd01163 DszC Dibenzothiophene (DBT) desulfurization enzyme C. DszC is a flavin reductase dependent enzyme, which catalyzes the first two steps of DBT desulfurization in mesophilic bacteria. DszC converts DBT to DBT-sulfoxide, which is then converted to DBT-sulfone. Bacteria with this enzyme are candidates for the removal of organic sulfur compounds from fossil fuels, which pollute the environment. An equivalent enzyme tdsC, is found in thermophilic bacteria. This alignment also contains a closely related uncharacterized subgroup.
Probab=100.00 E-value=1.8e-57 Score=434.46 Aligned_cols=356 Identities=21% Similarity=0.232 Sum_probs=314.6
Q ss_pred HHHHHHhhccCchhhhhcccCCCCchHHHHHHHHhcCCCCCCCCccCCCCCCCHHHHHHHHHHHHhcCCcchhHHHhhhh
Q psy12318 21 TVASYCKTHITPIAADIDSTNDFKDLRKVWKDFGQLGLLGITVPEEFGGSEMGYLDHVIAMEELSRSSASVGLSFVAHSN 100 (392)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~p~~~GG~~~~~~~~~~~~~~la~~~~s~~~~~~~~~~ 100 (392)
+++++. +.+.+.+.+.|+++.||. +.|+.|++.||+++.+|++|||.|+++.+...+++++++.|+++++++.+|.
T Consensus 2 ~~~~~~-~~~~~~a~~~d~~~~~p~--~~~~~l~~~G~~~l~vP~~~GG~g~~~~~~~~~~e~la~~~~s~~~~~~~~~- 77 (377)
T cd01163 2 RARPLA-ARIAEGAAERDRQRGLPY--EEVALLRQSGLGTLRVPKEYGGLGASLPDLYEVVRELAAADSNIAQALRAHF- 77 (377)
T ss_pred hHHHHH-HHHhhhhhhhhhcCCCCH--HHHHHHHHCCCccccCchhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHH-
Confidence 355664 567778888899999999 9999999999999999999999999999999999999999999999988887
Q ss_pred hHHHHHHhcCCHHHHHHhhhHHhcCCeeEEEeecCCCCCCCcCCceeEEEEeCCeEEEeeeEeeeeCCCCCcEEEEEEEe
Q psy12318 101 LCVNQINRHATKQQKEKYLPALCSGEKIGCLAMSEPGSGSDVISMSLKAEKKGDMYVLNGNKFWITNGPDADIAVVYART 180 (392)
Q Consensus 101 ~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~te~~~gsd~~~~~~~a~~~~~g~~l~G~k~~vs~~~~ad~~lv~a~~ 180 (392)
.....+..+++++|+++|++++.+|+.+ +.++|||++++ .....++++++++||+|||+|.|+|++.+|||++|.+++
T Consensus 78 ~~~~~l~~~g~~~~~~~~l~~~~~g~~~-~~a~tE~~~~~-~~~~~~~~~~~~~g~~lnG~K~~is~a~~Ad~~~v~a~~ 155 (377)
T cd01163 78 GFVEALLLAGPEQFRKRWFGRVLNGWIF-GNAVSERGSVR-PGTFLTATVRDGGGYVLNGKKFYSTGALFSDWVTVSALD 155 (377)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHhCCCeE-EEeecCCCCCC-CCCceEEEEecCCEEEEeceEEeecCCccceEEEEEEEc
Confidence 5567888999999999999999999965 46999999775 666777788888999999999999999999999999985
Q ss_pred CCCCCCCCCceEEEEEeCCCCCccccccccccCCCCCCcEEEEEcceeeCCCCcccCCCccHHHHHHhhcHHHHHHhHHH
Q psy12318 181 NPNADKKQHGISTFIVEKGTPGFSKGKKLNKLGMRGSNTGELIFENCQVPAENLLGGENKGAYVLMSGLDLERLVISAGP 260 (392)
Q Consensus 181 ~~~~~~~~~~~~~~lV~~~~~Gv~~~~~~~~~G~~~~~s~~v~f~~v~Vp~~~~l~~~~~g~~~~~~~~~~~r~~~~a~~ 260 (392)
++ .++.+|+||.+.|||++.++|+++||+++++++|.|+||+||++++++.++.++. ....+...++.+++.+
T Consensus 156 ~~------~~~~~~lV~~~~~Gv~i~~~~~~~G~~~~~s~~v~f~~v~Vp~~~~lg~~~~g~~-~~~~~~~~~l~~aa~~ 228 (377)
T cd01163 156 EE------GKLVFAAVPTDRPGITVVDDWDGFGQRLTASGTVTFDNVRVEPDEVLPRPNAPDR-GTLLTAIYQLVLAAVL 228 (377)
T ss_pred CC------CcEEEEEEeCCCCceeecCCcccccCccCCcceEEEeeEEECHHHccCCCccccc-cccccHHHHHHHHHHH
Confidence 42 2467899999999999999999999999999999999999999999998877654 2334567889999999
Q ss_pred HHHHHHHHHHHHHHHHhhh-hcCC----CCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC------------CCh
Q psy12318 261 VGIMQACCDFAFNYVHERV-QFGT----RIGEFQLMQGKIADMHVALSASRAYLYSVAKACDRGS------------INS 323 (392)
Q Consensus 261 ~G~a~~al~~~~~~~~~r~-~~g~----~l~~~~~v~~~la~~~~~~~~~~~~~~~~~~~~~~~~------------~~~ 323 (392)
+|+++++++.+++|+++|+ +||+ ++.++|.+|++|+++..++++++++++.+++.++++. ...
T Consensus 229 lG~a~~al~~~~~~~~~R~~~~g~~~~~~~~~~~~v~~~la~~~~~l~aar~~~~~aa~~~d~~~~~~~~~~~~~~~~~~ 308 (377)
T cd01163 229 AGIARAALDDAVAYVRSRTRPWIHSGAESARDDPYVQQVVGDLAARLHAAEALVLQAARALDAAAAAGTALTAEARGEAA 308 (377)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCcCCccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHH
Confidence 9999999999999999995 6765 5789999999999999999999999999999887641 123
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCChHHHHHHhhccCcccCChHHHHHHHHHHHHhhh
Q psy12318 324 KECAGVFLVAAENAVKVALEAIQCLGGNGYINDYPTGRYLRDAKLYEIGAGTSEVRRIVIGRSINAE 390 (392)
Q Consensus 324 ~~~~~~k~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~rd~~~~~~~~g~~~~~~~~l~~~~l~~ 390 (392)
..++++|+++++.+.++++.++|++||.||+++++++|+|||++...+|+..+ -...+++..++++
T Consensus 309 ~~~~~aK~~~~~~a~~~~~~a~q~~Gg~g~~~~~~l~r~~Rd~~~~~~h~~~~-~~~~~~~~~~~~~ 374 (377)
T cd01163 309 LAVAAAKVVVTRLALDATSRLFEVGGASATAREHNLDRHWRNARTHTLHNPVI-YKERAVGDYALNG 374 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCchhhccccCCcchhhhhhhhhccCHHH-HHHHHhchhhcCC
Confidence 46779999999999999999999999999999999999999999999998885 5566777777653
No 30
>KOG0137|consensus
Probab=100.00 E-value=9.5e-58 Score=424.48 Aligned_cols=377 Identities=34% Similarity=0.506 Sum_probs=342.5
Q ss_pred CCCHHHHHHHHHHHHHHhhccCc--hhhhhcccCCCCchHHHHHHHHhcCCCCCCCCccCCCCCCCHHHHHHHHHHHHhc
Q psy12318 10 DLTEEQNKLRETVASYCKTHITP--IAADIDSTNDFKDLRKVWKDFGQLGLLGITVPEEFGGSEMGYLDHVIAMEELSRS 87 (392)
Q Consensus 10 ~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~p~~~GG~~~~~~~~~~~~~~la~~ 87 (392)
.+++++.++.+.+..-+.+.+.. +....|+....++ +.++.|++.|+|++.+|.+|+|.|.++.+++.+.+.++.+
T Consensus 75 v~~~e~~~~~~~~~~pl~r~f~e~~d~~k~d~~~~~~~--~t~e~l~elG~fgl~v~~e~~G~G~~ntq~arl~e~~~~~ 152 (634)
T KOG0137|consen 75 VITSEQKELLEQFVLPLERFFEEVNDSKKNDKLGKIEE--TTLEALRELGLFGLQVPSEFDGLGFCNTQYARLFEIVSVA 152 (634)
T ss_pred cCcHHHHHHHHhhhhhHHHhhhccchhhhhhhhcccch--hHHHHHHHhCceeeccCcccCccccchHHHHHHhhccccc
Confidence 45666665554444333333332 3456777888898 9999999999999999999999999999999999999999
Q ss_pred CCcchhHHHhhhhhHHHHHHhcCCHHHHHHhhhHHhcCCeeEEEeecCCCCCCCcCCceeEEEEe--CCeEEEeeeEeee
Q psy12318 88 SASVGLSFVAHSNLCVNQINRHATKQQKEKYLPALCSGEKIGCLAMSEPGSGSDVISMSLKAEKK--GDMYVLNGNKFWI 165 (392)
Q Consensus 88 ~~s~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~te~~~gsd~~~~~~~a~~~--~~g~~l~G~k~~v 165 (392)
|.++++.+..|...+.-.|..+|+++||++|||++.+|+.+++|++|||..|||.....++++.. ++.|+|||.|.||
T Consensus 153 D~~v~~tl~ahq~i~~k~l~lyGt~~Qk~kYL~~LaSg~~~~A~altE~s~Gsdaas~~~~a~~s~dg~~y~LNG~Kiwi 232 (634)
T KOG0137|consen 153 DLNVGVTLGAHQSIGLKGLLLYGTDEQKQKYLPKLASGKLIAAFALTEPSSGSDAASGRTTATLSPDGKHYVLNGSKIWI 232 (634)
T ss_pred cccceeeeccchhhheeeeeecCCHHHHHHHHHhhhcCCccceEEEecCCCCcccccceeeeeecCCCCeEEEcCeeEEE
Confidence 99999988888767777899999999999999999999999999999999999999999998865 4569999999999
Q ss_pred eCCCCCcEEEEEEEeCCCC--CCCCCceEEEEEeCCCCCccccccccccCCCCCCcEEEEEcceeeCCCCcccCCCccHH
Q psy12318 166 TNGPDADIAVVYARTNPNA--DKKQHGISTFIVEKGTPGFSKGKKLNKLGMRGSNTGELIFENCQVPAENLLGGENKGAY 243 (392)
Q Consensus 166 s~~~~ad~~lv~a~~~~~~--~~~~~~~~~~lV~~~~~Gv~~~~~~~~~G~~~~~s~~v~f~~v~Vp~~~~l~~~~~g~~ 243 (392)
||+..||+++|+|++..++ +....++++|+|+++..||+-.++..++|.+++.+..|+|++|.||.+++||.+++|+.
T Consensus 233 sn~g~Adif~VfAqt~~~~~~g~~k~k~T~Flver~~~Gvt~G~~e~k~GiKgsnt~~v~f~~~ki~~envlG~~G~G~k 312 (634)
T KOG0137|consen 233 SNGGLADIFTVFAQTEVDPADGEVKRKITAFLVERDFGGVTNGPPEKKMGIKGSNTAEVHFEGVKIPIENVLGKPGDGFK 312 (634)
T ss_pred ecCccceeeeeeeccccCCCCccccCceEEEEEeccccCccCCCchhhhcccccceeeeeeccccccHHHhcCCCCcchH
Confidence 9999999999999986322 23557899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhCC--CC
Q psy12318 244 VLMSGLDLERLVISAGPVGIMQACCDFAFNYVHERVQFGTRIGEFQLMQGKIADMHVALSASRAYLYSVAKACDRG--SI 321 (392)
Q Consensus 244 ~~~~~~~~~r~~~~a~~~G~a~~al~~~~~~~~~r~~~g~~l~~~~~v~~~la~~~~~~~~~~~~~~~~~~~~~~~--~~ 321 (392)
+++.+++.+|+..++..+|.++++++.+.+|+.+|.|||.+|.++..+|.++++|...++++++++|..+..+|+. .+
T Consensus 313 va~nilnsgR~~~aaa~~G~mkr~I~~~~d~~~~rtQ~g~~L~~~~l~q~k~~~m~~~~Ya~ESm~yl~sg~~D~~~a~d 392 (634)
T KOG0137|consen 313 VAMNILNSGRFGMAAALLGLMKRIIEEAADYATNRTQFGKKLHDFGLIQEKVAEMASKVYATESMLYLLSGLMDEVGAKD 392 (634)
T ss_pred HHHHHHccCCcchhHHHHHHHHHHHHHHHHHhhcceecCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccccccee
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999983 34
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCChHHHHHHhhccCcccCChHHHHHHHHHHHHh
Q psy12318 322 NSKECAGVFLVAAENAVKVALEAIQCLGGNGYINDYPTGRYLRDAKLYEIGAGTSEVRRIVIGRSIN 388 (392)
Q Consensus 322 ~~~~~~~~k~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~rd~~~~~~~~g~~~~~~~~l~~~~l 388 (392)
...+.++.|+++++.++.++.+++|++||.||+++.+++|.+||++.+.|++|++++.+..|+..-+
T Consensus 393 ~~lEaai~Ki~a~e~a~~v~se~iqi~Gg~g~m~d~g~Er~LRD~ri~~I~egtndvLrlfiAltg~ 459 (634)
T KOG0137|consen 393 VQLEAAILKIFASEQAWAVVSEAIQIVGGMGYMRDTGLERLLRDARILRIFEGTNDVLRLFIALTGL 459 (634)
T ss_pred eeehHHHHHHHhhhHHHHHHHhhhheeccccccccCchHHHhhhhheeeeecCchhHHHHHHHHHHH
Confidence 6788999999999999999999999999999999999999999999999999999999998876544
No 31
>cd01154 AidB Proteins involved in DNA damage response, similar to the AidB gene product. AidB is one of several genes involved in the SOS adaptive response to DNA alkylation damage, whose expression is activated by the Ada protein. Its function has not been entirely elucidated; however, it is similar in sequence and function to acyl-CoA dehydrogenases. It has been proposed that aidB directly destroys DNA alkylating agents such as nitrosoguanidines (nitrosated amides) or their reaction intermediates.
Probab=100.00 E-value=1.5e-54 Score=417.67 Aligned_cols=348 Identities=28% Similarity=0.437 Sum_probs=307.3
Q ss_pred CchhhhhcccCC------CCc-hHHHHHHHHhcCCCCCCCCccCCCCCCCHHHHHHHHHHHHhcCCcchhHHHhhhhhHH
Q psy12318 31 TPIAADIDSTND------FKD-LRKVWKDFGQLGLLGITVPEEFGGSEMGYLDHVIAMEELSRSSASVGLSFVAHSNLCV 103 (392)
Q Consensus 31 ~~~~~~~~~~~~------~~~-~~~~~~~l~~~Gl~~~~~p~~~GG~~~~~~~~~~~~~~la~~~~s~~~~~~~~~~~~~ 103 (392)
.|...+.|+.+. +|+ .+++++.+.+.||+++ +|+++||.+ ........+.++..+...+..+.+|. .+.
T Consensus 45 ~P~~~~~d~~g~r~~~v~~~~~~~~~~~~~~~~G~~~~-~~~~~~~~g--~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~ 120 (418)
T cd01154 45 PPVLEMWDRWGRRVDRVWVHPAWHALMRRLIEEGVINI-EDGPAGEGR--RHVHFAAGYLLSDAAAGLLCPLTMTD-AAV 120 (418)
T ss_pred CCcccCCCCCCCcCCeEEeCHHHHHHHHHHHHcCCccC-CchhhCCCc--HHHHHHHHHHHHhcchhccCcHHHHH-HHH
Confidence 566666776666 562 3589999999999999 777776644 33344556777777777666666776 677
Q ss_pred HHHHhcCCHHHHHHhhhHHhcCC----eeEEEeecCCCCCCCcCCceeEEEEe-CCeEEEeeeEeeeeCCCCCcEEEEEE
Q psy12318 104 NQINRHATKQQKEKYLPALCSGE----KIGCLAMSEPGSGSDVISMSLKAEKK-GDMYVLNGNKFWITNGPDADIAVVYA 178 (392)
Q Consensus 104 ~~l~~~g~~~~~~~~l~~~~~g~----~~~~~a~te~~~gsd~~~~~~~a~~~-~~g~~l~G~k~~vs~~~~ad~~lv~a 178 (392)
..|..+|+++|+ +|++++.+|+ .++|+++|||++|||+.++.|+|+++ +|+|+|||+|+|+|++ .||+++|+|
T Consensus 121 ~~l~~~g~~~~~-~~l~~l~~g~~~~~~~~~~~~TEp~~GSD~~~~~T~A~~~~g~~~~LnG~K~f~s~a-~Ad~~lv~A 198 (418)
T cd01154 121 YALRKYGPEELK-QYLPGLLSDRYKTGLLGGTWMTEKQGGSDLGANETTAERSGGGVYRLNGHKWFASAP-LADAALVLA 198 (418)
T ss_pred HHHHHhCcHHHH-HHHHHHhCCCcccchhheeeecCCCcccchhhCeEEEEECCCCcEEEEEEEEEecCc-ccCEEEEEE
Confidence 899999988865 6999999997 89999999999999999999999999 8999999999999999 999999999
Q ss_pred EeCCCCCCCCCceEEEEEeCCCC-----CccccccccccCCCCCCcEEEEEcceeeCCCCcccCCCccHHHHHHhhcHHH
Q psy12318 179 RTNPNADKKQHGISTFIVEKGTP-----GFSKGKKLNKLGMRGSNTGELIFENCQVPAENLLGGENKGAYVLMSGLDLER 253 (392)
Q Consensus 179 ~~~~~~~~~~~~~~~~lV~~~~~-----Gv~~~~~~~~~G~~~~~s~~v~f~~v~Vp~~~~l~~~~~g~~~~~~~~~~~r 253 (392)
+++++. ++..++++|+||++.| ||++.+.|+++|++++++++|.|+|| .++++|.+++|+..+...++..|
T Consensus 199 rt~~~~-~~~~gls~flVp~~~~~~~~~Gv~i~~~~~~~G~r~~~~~ev~f~dv---~~~~lG~~g~G~~~~~~~l~~~R 274 (418)
T cd01154 199 RPEGAP-AGARGLSLFLVPRLLEDGTRNGYRIRRLKDKLGTRSVATGEVEFDDA---EAYLIGDEGKGIYYILEMLNISR 274 (418)
T ss_pred ECCCCC-CCCCcEEEEEEeccCCCCCCCCeEecccccccCCCCCCeEEEEecCc---CccccCCCCccHHHHHHHHHHHH
Confidence 987543 2567899999999875 99999999999999999999999998 37899999999999999999999
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHhhhhcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC--C------hHH
Q psy12318 254 LVISAGPVGIMQACCDFAFNYVHERVQFGTRIGEFQLMQGKIADMHVALSASRAYLYSVAKACDRGSI--N------SKE 325 (392)
Q Consensus 254 ~~~~a~~~G~a~~al~~~~~~~~~r~~~g~~l~~~~~v~~~la~~~~~~~~~~~~~~~~~~~~~~~~~--~------~~~ 325 (392)
+.+++.++|+++++++.+++|+++|++||+++.++|.+|++|+++.+++++++++++.+++.++.... . ...
T Consensus 275 ~~~aa~~~G~a~~al~~a~~ya~~R~~fg~~l~~~~~v~~~La~~~~~~eaar~l~~~aa~~~~~~~~~~~~~~~~~r~~ 354 (418)
T cd01154 275 LDNAVAALGIMRRALSEAYHYARHRRAFGKPLIDHPLMRRDLAEMEVDVEAATALTFRAARAFDRAAADKPVEAHMARLA 354 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCChhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998886421 1 225
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcccCCChHHHHHHhhccCcccCChHHHHHHHHHHHHh
Q psy12318 326 CAGVFLVAAENAVKVALEAIQCLGGNGYINDYPTGRYLRDAKLYEIGAGTSEVRRIVIGRSIN 388 (392)
Q Consensus 326 ~~~~k~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~rd~~~~~~~~g~~~~~~~~l~~~~l 388 (392)
++++|+++++.+.++++.+++++||.||.++++++|+|||++..++++|++++++..+.|.+-
T Consensus 355 ~~~aK~~~~e~a~~v~~~a~~i~Gg~G~~~~~~l~r~~RDa~~~~i~~Gt~~i~~~~~~r~~~ 417 (418)
T cd01154 355 TPVAKLIACKRAAPVTSEAMEVFGGNGYLEEWPVARLHREAQVTPIWEGTGNIQALDVLRVLV 417 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcEEcCCChHHHHHhcCcCcceeccHHHHHHHHHHHHhc
Confidence 678999999999999999999999999999999999999999999999999999999998764
No 32
>PLN02312 acyl-CoA oxidase
Probab=100.00 E-value=9e-55 Score=434.87 Aligned_cols=347 Identities=20% Similarity=0.296 Sum_probs=312.9
Q ss_pred cccCCCCchHHHHHHHHhcCCCCCCCCccCCCCCCCHHHHHHHHHHHHhcCCcchhHHHhhhhhHHHHHHhcCCHHHHHH
Q psy12318 38 DSTNDFKDLRKVWKDFGQLGLLGITVPEEFGGSEMGYLDHVIAMEELSRSSASVGLSFVAHSNLCVNQINRHATKQQKEK 117 (392)
Q Consensus 38 ~~~~~~~~~~~~~~~l~~~Gl~~~~~p~~~GG~~~~~~~~~~~~~~la~~~~s~~~~~~~~~~~~~~~l~~~g~~~~~~~ 117 (392)
++...++. +.++.+.+.|+++..+|++ |.+ ++.....++|++++.+++++..+.+|..++...|..+|+++|+++
T Consensus 101 ~~~~~~~~--~~~~~l~~~g~~~~~~pe~--g~~-~~~~~~~~~Eel~~~d~s~~~~~~vh~~l~~~~I~~~GTeeqk~~ 175 (680)
T PLN02312 101 EQQREITM--KRILYLLERGVFRGWLTET--GPE-AELRKLALLEVIGIYDHSLAIKLGVHFFLWGGAIKFLGTKRHHDK 175 (680)
T ss_pred HHHHHhHH--HHHHHHHHhhhcCCCCCCC--CCc-cHHHHHHHHHHHHHhcchHHHHHHhhhhhHHHHHHHhCCHHHHHH
Confidence 34445566 8899999999999999985 333 688889999999999998888888887788889999999999999
Q ss_pred hhhHHhcCCeeEEEeecCCCCCCCcCCceeEEEEe--CCeEEEe-----eeEeeeeCC-CCCcEEEEEEEeCCCCCCCCC
Q psy12318 118 YLPALCSGEKIGCLAMSEPGSGSDVISMSLKAEKK--GDMYVLN-----GNKFWITNG-PDADIAVVYARTNPNADKKQH 189 (392)
Q Consensus 118 ~l~~~~~g~~~~~~a~te~~~gsd~~~~~~~a~~~--~~g~~l~-----G~k~~vs~~-~~ad~~lv~a~~~~~~~~~~~ 189 (392)
|||++.+|+.++|+++|||++|||+.+++|+|+++ +++|+|| |.|+|++|+ ..||+++|+|++.+++ +..
T Consensus 176 ~L~~~~~ge~ig~fA~TEpghGSdv~~leTtAt~D~~~defVLNtPt~~g~K~wig~a~~~A~~~vV~Arl~~~~--~~~ 253 (680)
T PLN02312 176 WLKDTEDYVVKGCFAMTELGHGSNVRGIETVTTYDPKTEEFVINTPCESAQKYWIGGAANHATHTIVFSQLHING--KNE 253 (680)
T ss_pred HHHHHhCCCeeeEeeecCCCcCcchhcCeEEEEEeCCCCEEEECCCCCCeEEECccCCcccCCEEEEEEEECCCC--CCC
Confidence 99999999999999999999999999999999998 4789999 799999998 7999999999987543 567
Q ss_pred ceEEEEEeC---C---CCCccccccccccCCCCCCcEEEEEcceeeCCCCcccC----------------CCccHHHHHH
Q psy12318 190 GISTFIVEK---G---TPGFSKGKKLNKLGMRGSNTGELIFENCQVPAENLLGG----------------ENKGAYVLMS 247 (392)
Q Consensus 190 ~~~~~lV~~---~---~~Gv~~~~~~~~~G~~~~~s~~v~f~~v~Vp~~~~l~~----------------~~~g~~~~~~ 247 (392)
|+.+|+||. + .|||++.+...++|+++.+++.|.||||+||.+++|+. ++.|+.+.+.
T Consensus 254 Gv~~FlV~ird~~~~~~PGV~ig~~~~K~G~~g~dng~l~FdnVrVP~~nlLg~~~~V~~~G~y~~~~~~~~~gf~~~~~ 333 (680)
T PLN02312 254 GVHAFIAQIRDQDGNICPNIRIADCGHKIGLNGVDNGRIWFDNLRIPRENLLNSVADVSPDGKYVSAIKDPDQRFGAFLA 333 (680)
T ss_pred CeEEEEEeecCCCCCCCCCEEeccCCCcccccCCCceEEEEccEEECHHHhCCccceeCCCCceecCCCCccchHHHHHH
Confidence 899999982 3 79999999999999999999999999999999999984 4678888889
Q ss_pred hhcHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhcCC----C---CccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Q psy12318 248 GLDLERLVISAGPVGIMQACCDFAFNYVHERVQFGT----R---IGEFQLMQGKIADMHVALSASRAYLYSVAKACDRGS 320 (392)
Q Consensus 248 ~~~~~r~~~~a~~~G~a~~al~~~~~~~~~r~~~g~----~---l~~~~~v~~~la~~~~~~~~~~~~~~~~~~~~~~~~ 320 (392)
.+..+|+.+++.++|+++++++.+++|+++|+|||. | +.++|.+|++|+++.++++++........+..+.+.
T Consensus 334 ~l~~~R~~iaa~a~g~a~~Al~iAvrYa~~R~QFg~~~~~~E~~I~dyq~~Q~rLa~~la~~~a~~~~a~~l~~~~~~~~ 413 (680)
T PLN02312 334 PLTSGRVTIAVSAIYSSKVGLAIAIRYSLSRRAFSVTPNGPEVLLLDYPSHQRRLLPLLAKTYAMSFAANDLKMIYVKRT 413 (680)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeecCCCCCCccchHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999999999999999999999999999999995 4 999999999999999999998777777666554432
Q ss_pred -----CChHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCChHHHHHHhhccCcccCChHHHHHHHHHHHHhhhc
Q psy12318 321 -----INSKECAGVFLVAAENAVKVALEAIQCLGGNGYINDYPTGRYLRDAKLYEIGAGTSEVRRIVIGRSINAEY 391 (392)
Q Consensus 321 -----~~~~~~~~~k~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~rd~~~~~~~~g~~~~~~~~l~~~~l~~~ 391 (392)
+....++++|+++++.+.+++++++|+|||.||+.+++++++|||++...+++|++++++.+++|.+++.|
T Consensus 414 ~~~~~~~~~~as~aKa~~t~~a~~~~~~~rq~~GG~Gy~~~~~l~~l~rd~~~~~t~EG~n~Vl~~~iAr~ll~~~ 489 (680)
T PLN02312 414 PESNKAIHVVSSGFKAVLTWHNMRTLQECREACGGQGLKTENRVGQLKAEYDVQSTFEGDNNVLMQQVSKALLAEY 489 (680)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccCcHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHH
Confidence 34568899999999999999999999999999999999999999999999999999999999999998764
No 33
>cd01159 NcnH Naphthocyclinone hydroxylase. Naphthocyclinone is an aromatic polyketide and an antibiotic, which is active against Gram-positive bacteria. Polyketides are secondary metabolites, which have important biological functions such as antitumor, immunosupressive or antibiotic activities. NcnH is a hydroxylase involved in the biosynthesis of naphthocyclinone and possibly other polyketides.
Probab=100.00 E-value=2.6e-54 Score=411.51 Aligned_cols=347 Identities=17% Similarity=0.221 Sum_probs=300.1
Q ss_pred HHHHHhhccCchhhhhcccCCCCchHHHHHHHHhcCCCCCCCCccCCCCCCCHHHHHHHHHHHHhcCCcchhHHHhhhhh
Q psy12318 22 VASYCKTHITPIAADIDSTNDFKDLRKVWKDFGQLGLLGITVPEEFGGSEMGYLDHVIAMEELSRSSASVGLSFVAHSNL 101 (392)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~p~~~GG~~~~~~~~~~~~~~la~~~~s~~~~~~~~~~~ 101 (392)
++.+. +.+.+.+.+.|+++.||. ++|+.|++.||+++.+|++|||.++++.+...++++|++.|+|++++...+. +
T Consensus 3 ~~~~~-~~~~~~a~~~d~~~~~p~--~~~~~l~~~Gl~~~~vP~e~GG~g~~~~~~~~~~e~la~~~~s~a~~~~~~~-~ 78 (370)
T cd01159 3 AEDLA-PLIRERAPEAERARRLPD--EVVRALREIGFFRMFVPKRYGGLEGDFAEFAEAIATLAEACGSAAWVASIVA-T 78 (370)
T ss_pred HHHHH-HHHHHhHHHHHHcCCCCH--HHHHHHHHCChHhhCCchhcCCCCCCHHHHHHHHHHHHhhCchHHHHHHHHH-H
Confidence 34443 456778888898899999 9999999999999999999999999999999999999999999998876665 5
Q ss_pred HHHHHHhcCCHHHHHHhhhHHhcCCeeEEEeecCCCCCCCcCCceeEEEEeCCeEEEeeeEeeeeCCCCCcEEEEEEEeC
Q psy12318 102 CVNQINRHATKQQKEKYLPALCSGEKIGCLAMSEPGSGSDVISMSLKAEKKGDMYVLNGNKFWITNGPDADIAVVYARTN 181 (392)
Q Consensus 102 ~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~te~~~gsd~~~~~~~a~~~~~g~~l~G~k~~vs~~~~ad~~lv~a~~~ 181 (392)
....+..+++++|++.|++.. .+ ..+ ...++.++++++++||+|||+|.|+|++.++|+++|.++++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~-~~--~~~----------g~~~~~t~A~~~~~gy~lnG~K~~it~~~~ad~~~v~a~~~ 145 (370)
T cd01159 79 HSRMLAAFPPEAQEEVWGDGP-DT--LLA----------GSYAPGGRAERVDGGYRVSGTWPFASGCDHADWILVGAIVE 145 (370)
T ss_pred HHHHHHhCCHHHHHHHhCCCC-Cc--eEE----------eeecCCceeEEeCCeEEEeccccCccCCCcCceeEeeeECC
Confidence 666788889999998887642 11 111 11345678999999999999999999999999999999975
Q ss_pred CCCCCCCCceEEEEEeCCCCCccccccccccCCCCCCcEEEEEcceeeCCCCcccCCC------ccHH---HHHHhhcHH
Q psy12318 182 PNADKKQHGISTFIVEKGTPGFSKGKKLNKLGMRGSNTGELIFENCQVPAENLLGGEN------KGAY---VLMSGLDLE 252 (392)
Q Consensus 182 ~~~~~~~~~~~~~lV~~~~~Gv~~~~~~~~~G~~~~~s~~v~f~~v~Vp~~~~l~~~~------~g~~---~~~~~~~~~ 252 (392)
+++ +..++++|+||++ ||++.++|+.+||++++++.|.|+||+||++++|+..+ .|.. +.......+
T Consensus 146 ~~~--~~~~~~~~lV~~~--Gv~~~~~~~~~G~r~~~s~~v~f~~v~Vp~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 221 (370)
T cd01159 146 DDD--GGPLPRAFVVPRA--EYEIVDTWHVVGLRGTGSNTVVVDDVFVPEHRTLTAGDMMAGDGPGGSTPVYRMPLRQVF 221 (370)
T ss_pred CCC--CCCcceEEEEEhH--HCEEecccccccccccCCCcEEEcceEcCccceecccccccCCCCCCCCccccCchHHHH
Confidence 432 4567899999987 99999999999999999999999999999999997542 2311 233455778
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHhhhhc---CCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC-----C---
Q psy12318 253 RLVISAGPVGIMQACCDFAFNYVHERVQF---GTRIGEFQLMQGKIADMHVALSASRAYLYSVAKACDRGS-----I--- 321 (392)
Q Consensus 253 r~~~~a~~~G~a~~al~~~~~~~~~r~~~---g~~l~~~~~v~~~la~~~~~~~~~~~~~~~~~~~~~~~~-----~--- 321 (392)
++.++++++|+++++++.+++|+++|.++ |+++.++|.+|++|+++.+.+++++++++.+++.+++.. .
T Consensus 222 ~~~~aa~~lG~a~~~l~~~~~~~~~R~~~~~~g~~i~~~~~v~~~la~~~~~l~~a~~~~~~aa~~~~~~~~~~~~~~~~ 301 (370)
T cd01159 222 PLSFAAVSLGAAEGALAEFLELAGKRVRQYGAAVKMAEAPITQLRLAEAAAELDAARAFLERATRDLWAHALAGGPIDVE 301 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCcccCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHH
Confidence 89999999999999999999999999987 678999999999999999999999999999999887641 1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCChHHHHHHhhccCcccCChH-HHHHHHHHHHHhh
Q psy12318 322 NSKECAGVFLVAAENAVKVALEAIQCLGGNGYINDYPTGRYLRDAKLYEIGAGTS-EVRRIVIGRSINA 389 (392)
Q Consensus 322 ~~~~~~~~k~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~rd~~~~~~~~g~~-~~~~~~l~~~~l~ 389 (392)
....+.++|+++++.+.++++.+++++||.||.++++++|+|||+++..+|+|++ ++++..|+|.+|+
T Consensus 302 ~~~~~~~aK~~~~e~~~~~~~~a~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~~~~~~~~~~~~~~~~l~ 370 (370)
T cd01159 302 ERARIRRDAAYAAKLSAEAVDRLFHAAGGSALYTASPLQRIWRDIHAAAQHAALNPETAAEAYGRALLG 370 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCchhcccCCcHHHHHHHHHHHhhhhccCcchHHHHHHHHhcC
Confidence 1345788999999999999999999999999999999999999999999999999 9999999999875
No 34
>cd00567 ACAD Acyl-CoA dehydrogenase. Both mitochondrial acyl-CoA dehydrogenases (ACAD) and peroxisomal acyl-CoA oxidases (AXO) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. In contrast, AXO catalyzes a different oxidative half-reaction, in which the reduced FAD is reoxidized by molecular oxygen. The ACAD family includes the eukaryotic beta-oxidation enzymes, short (SCAD), medium (MCAD), long (LCAD) and very-long (VLCAD) chain acyl-CoA dehydrogenases. These enzymes all share high sequence similarity, but differ in their substrate specificities. The ACAD family also includes amino acid catabolism enzymes such as Isovaleryl-CoA dehydrogenase (IVD), short/branched chain acyl-CoA dehydrogenases(SBCAD), Isob
Probab=100.00 E-value=2.6e-51 Score=385.13 Aligned_cols=325 Identities=43% Similarity=0.700 Sum_probs=295.5
Q ss_pred HHHHHHHHHHHHHhhccCchhhhhcccCCCCchHHHHHHHHhcCCCCCCCCccCCCCCCCHHHHHHHHHHHHhcCCcchh
Q psy12318 14 EQNKLRETVASYCKTHITPIAADIDSTNDFKDLRKVWKDFGQLGLLGITVPEEFGGSEMGYLDHVIAMEELSRSSASVGL 93 (392)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~p~~~GG~~~~~~~~~~~~~~la~~~~s~~~ 93 (392)
+++++++.+++|+.+.+.+.....+.... ..|+.+++.|++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~g~~---------------------------------- 42 (327)
T cd00567 2 EQRELRDSAREFAAEELEPYARERRETPE-----EPWELLAELGLL---------------------------------- 42 (327)
T ss_pred hHHHHHHHHHHHHHHhccccHHhHHhhCC-----CCHHHHHHHHHH----------------------------------
Confidence 57789999999999998887765554333 446666666666
Q ss_pred HHHhhhhhHHHHHHhcCCHHHHHHhhhHHhcCCeeEEEeecCCCCCCCcCCceeEEEEeCCeEEEeeeEeeeeCCCCCcE
Q psy12318 94 SFVAHSNLCVNQINRHATKQQKEKYLPALCSGEKIGCLAMSEPGSGSDVISMSLKAEKKGDMYVLNGNKFWITNGPDADI 173 (392)
Q Consensus 94 ~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~te~~~gsd~~~~~~~a~~~~~g~~l~G~k~~vs~~~~ad~ 173 (392)
++..+|..+|+++|+++|++.+.+|+.++++++|||++|+|...+.++++++++||+|||+|.|+|++..+||
T Consensus 43 -------~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~sE~~~gs~~~~~~~~a~~~~~g~~l~G~k~~~s~~~~ad~ 115 (327)
T cd00567 43 -------LGAALLLAYGTEEQKERYLPPLASGEAIAAFALTEPGAGSDLAGIRTTARKDGDGYVLNGRKIFISNGGDADL 115 (327)
T ss_pred -------hchHHHHHhCCHHHHHHHHHHHhCCCceEEEEecCCCCCCchhhCEeEEEEeCCEEEEEEEEEEecCCccCCE
Confidence 3445778889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCCCCCCCCceEEEEEeCCCCCccccccccccCCCCCCcEEEEEcceeeCCCCcccCCCccHHHHHHhhcHHH
Q psy12318 174 AVVYARTNPNADKKQHGISTFIVEKGTPGFSKGKKLNKLGMRGSNTGELIFENCQVPAENLLGGENKGAYVLMSGLDLER 253 (392)
Q Consensus 174 ~lv~a~~~~~~~~~~~~~~~~lV~~~~~Gv~~~~~~~~~G~~~~~s~~v~f~~v~Vp~~~~l~~~~~g~~~~~~~~~~~r 253 (392)
++|.++.++++ ++..++.+|+||.+.|||++.+.|+++|+++++++.+.|+||+||++++++.++.++......+...+
T Consensus 116 ~lv~a~~~~~~-~~~~~~~~~lvp~~~~Gv~~~~~~~~~G~~~~~~~~v~~~~v~Vp~~~~l~~~~~g~~~~~~~~~~~~ 194 (327)
T cd00567 116 FIVLARTDEEG-PGHRGISAFLVPADTPGVTVGRIWDKMGMRGSGTGELVFDDVRVPEDNLLGEEGGGFELAMKGLNVGR 194 (327)
T ss_pred EEEEEEeCCCC-CCCCceEEEEEeCCCCCeEeccccccccCCCCceEEEEECCEEecHHHcCCCCCchHHHHHHHHHHHH
Confidence 99999976432 13457889999999999999999999999999999999999999999999988888888888899999
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHhhhhcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC-ChHHHHHHHHH
Q psy12318 254 LVISAGPVGIMQACCDFAFNYVHERVQFGTRIGEFQLMQGKIADMHVALSASRAYLYSVAKACDRGSI-NSKECAGVFLV 332 (392)
Q Consensus 254 ~~~~a~~~G~a~~al~~~~~~~~~r~~~g~~l~~~~~v~~~la~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~k~~ 332 (392)
+.++++++|+++++++.+++|+++|.+||.|+.++|.+|++++++...+++++++++.+++.++.... ....+.++|.+
T Consensus 195 ~~~aa~~~G~a~~al~~~~~~~~~r~~~g~~~~~~~~vq~~la~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~k~~ 274 (327)
T cd00567 195 LLLAAVALGAARAALDEAVEYAKQRKQFGKPLAEFQAVQFKLADMAAELEAARLLLYRAAWLLDQGPDEARLEAAMAKLF 274 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999987654 56788999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcccCCChHHHHHHhhccCcccCChHHHHHHHHHH
Q psy12318 333 AAENAVKVALEAIQCLGGNGYINDYPTGRYLRDAKLYEIGAGTSEVRRIVIGR 385 (392)
Q Consensus 333 ~~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~rd~~~~~~~~g~~~~~~~~l~~ 385 (392)
+++.+.++++.+++++||.||.++++++|+|||++...+++|++++++..++|
T Consensus 275 ~~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~rd~~~~~~~~G~~~~~~~~~~~ 327 (327)
T cd00567 275 ATEAAREVADLAMQIHGGRGYSREYPVERYLRDARAARIAEGTAEIQRLIIAR 327 (327)
T ss_pred HHHHHHHHHHHHHHHccCccccCCCHHHHHHHhhhcceeecCHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999887764
No 35
>PRK11561 isovaleryl CoA dehydrogenase; Provisional
Probab=100.00 E-value=2.1e-50 Score=392.42 Aligned_cols=331 Identities=22% Similarity=0.329 Sum_probs=285.2
Q ss_pred CchHHHHHHHHhcCCCCCCCCccCCCCCCCHHHHHHHHHHHHhcCCcchhHHHhhhhhHHHHHHhcCCHHHHHHhhhHHh
Q psy12318 44 KDLRKVWKDFGQLGLLGITVPEEFGGSEMGYLDHVIAMEELSRSSASVGLSFVAHSNLCVNQINRHATKQQKEKYLPALC 123 (392)
Q Consensus 44 ~~~~~~~~~l~~~Gl~~~~~p~~~GG~~~~~~~~~~~~~~la~~~~s~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~ 123 (392)
|.++++++.+.+.|+.++.+++++| .+ .....+...-..+...+.....+++ +.+...+..+++++|+++|+|++.
T Consensus 86 p~~~~~~~~~~~~g~~~~~~~~~~~-~~-~~~~~~~~~~l~~~~~~g~~cp~~m--T~~a~~~l~~~~~e~~~~~lp~l~ 161 (538)
T PRK11561 86 PAWHLLMQGLCANRVHNLAWEEDAR-SG-AFVARAARFMLHAQVEAGTLCPITM--TFAATPLLLQMLPAPFQDWLTPLL 161 (538)
T ss_pred HHHHHHHHHHHHcCCccCCCCCccC-ch-HHHHHHHHHHHHhhhhHHhhchHHH--HHHHHHHHHhcCHHHHHHHHHHHh
Confidence 3467888888899999998887765 11 1222222222233333333333323 345566777788999999999999
Q ss_pred cCC-------------eeEEEeecCCCCCCCcCCceeEEEEe-CCeEEEeeeEeeeeCCCCCcEEEEEEEeCCCCCCCCC
Q psy12318 124 SGE-------------KIGCLAMSEPGSGSDVISMSLKAEKK-GDMYVLNGNKFWITNGPDADIAVVYARTNPNADKKQH 189 (392)
Q Consensus 124 ~g~-------------~~~~~a~te~~~gsd~~~~~~~a~~~-~~g~~l~G~k~~vs~~~~ad~~lv~a~~~~~~~~~~~ 189 (392)
+|+ .+.++++|||++|||+....|+|+++ +|+|+|||+|+|+| ++.+|+++|+|+++ .
T Consensus 162 sg~~~~~~~~~~~~~~~~~~~a~TEp~~GSDv~~~~T~A~~~~gg~w~LnG~K~fiS-a~~AD~~lVlArt~-------~ 233 (538)
T PRK11561 162 SDRYDSHLLPGGQKRGLLIGMGMTEKQGGSDVLSNTTRAERLADGSYRLVGHKWFFS-VPQSDAHLVLAQAK-------G 233 (538)
T ss_pred CCCcccccccchhhhhheeEEEecCCCCCCchhhCeeEEEECCCCeEEEEEEEEEEE-chhhCEEEEEEEEC-------C
Confidence 997 45699999999999999999999994 67899999999999 58999999999974 3
Q ss_pred ceEEEEEeCCCC-----CccccccccccCCCCCCcEEEEEcceeeCCCCcccCCCccHHHHHHhhcHHHHHHhHHHHHHH
Q psy12318 190 GISTFIVEKGTP-----GFSKGKKLNKLGMRGSNTGELIFENCQVPAENLLGGENKGAYVLMSGLDLERLVISAGPVGIM 264 (392)
Q Consensus 190 ~~~~~lV~~~~~-----Gv~~~~~~~~~G~~~~~s~~v~f~~v~Vp~~~~l~~~~~g~~~~~~~~~~~r~~~~a~~~G~a 264 (392)
++++|+||++.| ||++.+.++++|++++++++|.|+|| .+++||.+++|+..+...++..|+..++.++|++
T Consensus 234 Gls~FlVp~~~p~g~~nGv~i~rl~~klG~r~~~t~ev~f~dv---~~~llG~~g~G~~~i~~~l~~~Rl~~a~~a~G~a 310 (538)
T PRK11561 234 GLSCFFVPRFLPDGQRNAIRLERLKDKLGNRSNASSEVEFQDA---IGWLLGEEGEGIRLILKMGGMTRFDCALGSHGLM 310 (538)
T ss_pred ceEEEEEECCCCCCCCCceEEecccccccCCCCceeEEEECCH---HHHHCCCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999988 79999999999999999999999999 4889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC------hHHHHHHHHHHHHHHH
Q psy12318 265 QACCDFAFNYVHERVQFGTRIGEFQLMQGKIADMHVALSASRAYLYSVAKACDRGSIN------SKECAGVFLVAAENAV 338 (392)
Q Consensus 265 ~~al~~~~~~~~~r~~~g~~l~~~~~v~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~k~~~~~~a~ 338 (392)
+++++.+++|+++|++||+||+++|.+|++|+++.+++++++++++.+++.+|.+.+. ...++++|.++++.+.
T Consensus 311 ~~Al~~A~~yA~~R~~FG~~L~~~q~vq~~LAdm~~~ieaar~l~~~aa~~~d~~~~~~~~~~~rl~t~~aK~~~~e~a~ 390 (538)
T PRK11561 311 RRAFSVAIYHAHQRQVFGKPLIEQPLMRQVLSRMALQLEGQTALLFRLARAWDRRADAKEALWARLFTPAAKFVICKRGI 390 (538)
T ss_pred HHHHHHHHHHHHhCccCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999976421 2345689999999999
Q ss_pred HHHHHHHHHhcCCcccCCChHHHHHHhhccCcccCChHHHHHHHHHHHHhh
Q psy12318 339 KVALEAIQCLGGNGYINDYPTGRYLRDAKLYEIGAGTSEVRRIVIGRSINA 389 (392)
Q Consensus 339 ~~~~~~~~~~Gg~g~~~~~~l~r~~rd~~~~~~~~g~~~~~~~~l~~~~l~ 389 (392)
+++.+++|++||.||+++++++|+|||++..+|++|++++++..+.|.+.+
T Consensus 391 ~v~~~Amqv~GG~Gy~ee~~lerl~RDa~v~~I~eGt~~i~~ldv~r~l~~ 441 (538)
T PRK11561 391 PFVAEAMEVLGGIGYCEESELPRLYREMPVNSIWEGSGNIMCLDVLRVLNK 441 (538)
T ss_pred HHHHHHHHhcCCccCCCCcHHHHHHHHHhhhhcccCCHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999998865
No 36
>PTZ00460 acyl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=5.3e-49 Score=391.91 Aligned_cols=302 Identities=21% Similarity=0.257 Sum_probs=271.0
Q ss_pred CCcchhHHHhhhhhHHHHHHhcCCHHHHHHhhhHHhcCCeeEEEeecCCCCCCCcCCceeEEEEe--CCeEEEe-----e
Q psy12318 88 SASVGLSFVAHSNLCVNQINRHATKQQKEKYLPALCSGEKIGCLAMSEPGSGSDVISMSLKAEKK--GDMYVLN-----G 160 (392)
Q Consensus 88 ~~s~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~te~~~gsd~~~~~~~a~~~--~~g~~l~-----G 160 (392)
++.....+.+|..+....|..+|+++|+++|||++.+|+.++|+++|||++|||+.+++|+|+++ +++|+|| |
T Consensus 88 ~~~~~~~~~vh~~~~~~~I~~~GT~eQk~~~Lp~~~~ge~ig~~A~TEpghGSdv~~leTtAt~d~~~defvLntPt~~g 167 (646)
T PTZ00460 88 CPQGTFISTVHFAMVIPAFQVLGTDEQINLWMPSLLNFEIVGCYAQTELGHGSDVQNLETTATYDKQTNEFVIHTPSVEA 167 (646)
T ss_pred ccCCCceEEeeHhhHHHHHHHhCCHHHHHHHHHHHhCCChheeeeecCCCccCCcccceEEEEEcCCCCEEEECCCCCCe
Confidence 44444455667667777899999999999999999999999999999999999999999999986 5789998 9
Q ss_pred eEeeeeC-CCCCcEEEEEEEeCCCCCCCCCceEEEEEeCC-------CCCccccccccccCCCCCCcEEEEEcceeeCCC
Q psy12318 161 NKFWITN-GPDADIAVVYARTNPNADKKQHGISTFIVEKG-------TPGFSKGKKLNKLGMRGSNTGELIFENCQVPAE 232 (392)
Q Consensus 161 ~k~~vs~-~~~ad~~lv~a~~~~~~~~~~~~~~~~lV~~~-------~~Gv~~~~~~~~~G~~~~~s~~v~f~~v~Vp~~ 232 (392)
.|+|++| +..||+++|+|++..++ +..|+.+|+||.. .|||++.+...++|+++.+++.+.||||+||.+
T Consensus 168 ~K~wi~~~g~~A~~~vV~Arl~~~~--~~~Gi~~FlV~ird~~~~~~~pGV~vg~~~~k~G~~~~dng~l~Fd~VrVP~~ 245 (646)
T PTZ00460 168 VKFWPGELGFLCNFALVYAKLIVNG--KNKGVHPFMVRIRDKETHKPLQGVEVGDIGPKMGYAVKDNGFLSFDHYRIPLD 245 (646)
T ss_pred EEEccCCCCCCCCEEEEEEEECcCC--CCCceEEEEEeccccCCCCCCCCeEEeccccccCcCCCCceEEEeceEEECHH
Confidence 9999998 68999999999987543 5678999999942 499999999999999999999999999999999
Q ss_pred CcccC------CC----cc-HHHHHHhhcHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhcCC------CCccchhHHHHH
Q psy12318 233 NLLGG------EN----KG-AYVLMSGLDLERLVISAGPVGIMQACCDFAFNYVHERVQFGT------RIGEFQLMQGKI 295 (392)
Q Consensus 233 ~~l~~------~~----~g-~~~~~~~~~~~r~~~~a~~~G~a~~al~~~~~~~~~r~~~g~------~l~~~~~v~~~l 295 (392)
++|+. ++ .| +......+...|+.+++.++|+++++++.+++|+++|+|||+ |+.++|.+|++|
T Consensus 246 nlLg~~~~v~~~G~~~~~g~~~~~~~~l~~~R~~iaa~~~g~a~~Al~iAvrYa~~R~QFg~~~~~E~pI~~yQ~~Q~rL 325 (646)
T PTZ00460 246 SLLARYIKVSEDGQVERQGNPKVSYASMMYMRNLIIDQYPRFAAQALTVAIRYSIYRQQFTNDNKQENSVLEYQTQQQKL 325 (646)
T ss_pred HhCCcccccCCCCccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCCcHhhhHHHHHHH
Confidence 99985 33 24 666777788999999999999999999999999999999997 999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCC------CC------ChHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCChHHHHH
Q psy12318 296 ADMHVALSASRAYLYSVAKACDRG------SI------NSKECAGVFLVAAENAVKVALEAIQCLGGNGYINDYPTGRYL 363 (392)
Q Consensus 296 a~~~~~~~~~~~~~~~~~~~~~~~------~~------~~~~~~~~k~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~ 363 (392)
+++.+.+++++.+.+.+++..++. .+ ....++++|+++++.+.+++++++|+|||.||+.+++++++|
T Consensus 326 a~~la~~~A~r~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~as~aK~~~t~~a~~~~~~~~q~~GG~Gy~~~~~l~~~~ 405 (646)
T PTZ00460 326 LPLLAEFYACIFGGLKIKELVDDNFNRVQKNDFSLLQLTHAILSAAKANYTYFVSNCAEWCRLSCGGHGYAHYSGLPAIY 405 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhccCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccCcHHHHH
Confidence 999999999999999999887642 11 245688999999999999999999999999999999999999
Q ss_pred HhhccCcccCChHHHHHHHHHHHHhhhc
Q psy12318 364 RDAKLYEIGAGTSEVRRIVIGRSINAEY 391 (392)
Q Consensus 364 rd~~~~~~~~g~~~~~~~~l~~~~l~~~ 391 (392)
||++...+++|++++++.+++|.+++.|
T Consensus 406 rda~~~~t~eG~n~vl~~~iar~ll~~~ 433 (646)
T PTZ00460 406 FDMSPNITLEGENQIMYLQLARYLLKQL 433 (646)
T ss_pred HHhccceeecCcHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998765
No 37
>cd01150 AXO Peroxisomal acyl-CoA oxidase. Peroxisomal acyl-CoA oxidases (AXO) catalyze the first set in the peroxisomal fatty acid beta-oxidation, the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. In a second oxidative half-reaction, the reduced FAD is reoxidized by molecular oxygen. AXO is generally a homodimer, but it has been reported to form a different type of oligomer in yeast. There are several subtypes of AXO's, based on substrate specificity. Palmitoyl-CoA oxidase acts on straight-chain fatty acids and prostanoids; whereas, the closely related Trihydroxycoprostanoly-CoA oxidase has the greatest activity for 2-methyl branched side chains of bile precursors. Pristanoyl-CoA oxidase, acts on 2-methyl branched fatty acids. AXO has an additional domain, C-terminal to the region with similarity to acyl-CoA dehydrogenases, which is included in this alignment.
Probab=100.00 E-value=4.2e-49 Score=393.32 Aligned_cols=317 Identities=26% Similarity=0.316 Sum_probs=284.9
Q ss_pred CHHHHHHHHHHHHhcCCcchhHHHhhhhhHHHHHHhcCCHHHHHHhhhHHhcCCeeEEEeecCCCCCCCcCCceeEEEEe
Q psy12318 73 GYLDHVIAMEELSRSSASVGLSFVAHSNLCVNQINRHATKQQKEKYLPALCSGEKIGCLAMSEPGSGSDVISMSLKAEKK 152 (392)
Q Consensus 73 ~~~~~~~~~~~la~~~~s~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~te~~~gsd~~~~~~~a~~~ 152 (392)
++.+...+.+++++.|++++..+.+|..+....|..+|+++|+++|+|++.+|+.++|+++|||++|||+.+++|+|+++
T Consensus 80 ~~~~~~~~~e~l~~~d~~~~~~~~~h~~l~~~~i~~~Gt~eq~~~~L~~~~~g~~ig~~a~TE~ghGSdv~~leTtAt~d 159 (610)
T cd01150 80 DPEKMLALTNSLGGYDLSLGAKLGLHLGLFGNAIKNLGTDEHQDYWLQGANNLEIIGCFAQTELGHGSNLQGLETTATYD 159 (610)
T ss_pred CHHHHHHHHHHHhccCccccceeeehHHHHHHHHHHhCCHHHHHHHHHHHhccChheeeeccccCcCcCcccceeEEEEC
Confidence 67888899999999999987777888767888999999999999999999999999999999999999999999999999
Q ss_pred C--CeEEEe-----eeEeeeeCCC-CCcEEEEEEEeCCCCCCCCCceEEEEEeCC-------CCCccccccccccCCCCC
Q psy12318 153 G--DMYVLN-----GNKFWITNGP-DADIAVVYARTNPNADKKQHGISTFIVEKG-------TPGFSKGKKLNKLGMRGS 217 (392)
Q Consensus 153 ~--~g~~l~-----G~k~~vs~~~-~ad~~lv~a~~~~~~~~~~~~~~~~lV~~~-------~~Gv~~~~~~~~~G~~~~ 217 (392)
+ ++|+|| |.|+|++|+. .|++++|+|++..++ +..|+.+|+||.. .|||++.+.+.++|+++.
T Consensus 160 ~~t~efvLntp~~~g~K~wi~~~~~~a~~~vV~Arl~~~g--~~~Gv~~FlVp~rd~~~~~~~pGV~i~~~~~k~G~~g~ 237 (610)
T cd01150 160 PLTQEFVINTPDFTATKWWPGNLGKTATHAVVFAQLITPG--KNHGLHAFIVPIRDPKTHQPLPGVTVGDIGPKMGLNGV 237 (610)
T ss_pred CCCCeEEECCCCCCceEECccCcccCCCEEEEEEEeccCC--CCCCeEEEEEeccccccCCCCCCeEEeecccccCCCCC
Confidence 8 899999 9999999985 499999999986543 4578999999963 399999999999999999
Q ss_pred CcEEEEEcceeeCCCCcccC----------------CCccHHHHHHhhcHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhc
Q psy12318 218 NTGELIFENCQVPAENLLGG----------------ENKGAYVLMSGLDLERLVISAGPVGIMQACCDFAFNYVHERVQF 281 (392)
Q Consensus 218 ~s~~v~f~~v~Vp~~~~l~~----------------~~~g~~~~~~~~~~~r~~~~a~~~G~a~~al~~~~~~~~~r~~~ 281 (392)
+++.+.||||+||.+++|+. ++.|+..+...+..+|+.+++.++|.++++++.+++|++.|+||
T Consensus 238 dng~l~Fd~vrVP~~nlL~~~~~v~~~G~~~~~~~~~~~g~~~~~~~~~~gRl~ia~~a~g~~~~al~iAi~Ya~~R~qf 317 (610)
T cd01150 238 DNGFLQFRNVRIPRENLLNRFGDVSPDGTYVSPFKDPNKRYGAMLGTRSGGRVGLIYDAAMSLKKAATIAIRYSAVRRQF 317 (610)
T ss_pred CeEEEEEeeeEecHHHhcccccccCCCCceecCCCchhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHeeeec
Confidence 99999999999999999986 55677788888999999999999999999999999999999999
Q ss_pred CCC-------CccchhHHHHHHHHHHHHHHHHHHHHHH-------HHHhhCCC-----CChHHHHHHHHHHHHHHHHHHH
Q psy12318 282 GTR-------IGEFQLMQGKIADMHVALSASRAYLYSV-------AKACDRGS-----INSKECAGVFLVAAENAVKVAL 342 (392)
Q Consensus 282 g~~-------l~~~~~v~~~la~~~~~~~~~~~~~~~~-------~~~~~~~~-----~~~~~~~~~k~~~~~~a~~~~~ 342 (392)
|.| +.++|.+|++|+++.+..++.+...... .+.++++. +....++++|+++++.+.++++
T Consensus 318 g~~~~~~e~~I~~~q~~q~rL~~~la~~~a~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~aa~~K~~~t~~a~~~~~ 397 (610)
T cd01150 318 GPKPSDPEVQILDYQLQQYRLFPQLAAAYAFHFAAKSLVEMYHEIIKELLQGNSELLAELHALSAGLKAVATWTAAQGIQ 397 (610)
T ss_pred CCCCCCCcchhhccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999 9999999999999999998776443332 22333332 2345788999999999999999
Q ss_pred HHHHHhcCCcccCCChHHHHHHhhccCcccCChHHHHHHHHHHHHhhhc
Q psy12318 343 EAIQCLGGNGYINDYPTGRYLRDAKLYEIGAGTSEVRRIVIGRSINAEY 391 (392)
Q Consensus 343 ~~~~~~Gg~g~~~~~~l~r~~rd~~~~~~~~g~~~~~~~~l~~~~l~~~ 391 (392)
.++|+|||.||+.+++++++|||++...+++|++.+++.+++|.+++.|
T Consensus 398 ~~rq~~GG~Gy~~~~~l~~l~~d~~~~~t~EG~n~vl~~~iar~ll~~~ 446 (610)
T cd01150 398 ECREACGGHGYLAMNRLPTLRDDNDPFCTYEGDNTVLLQQTANYLLKKY 446 (610)
T ss_pred HHHHHhcCccchhhcChHHHHhhccceeeeecchHhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998865
No 38
>KOG1469|consensus
Probab=100.00 E-value=2.6e-50 Score=340.95 Aligned_cols=346 Identities=25% Similarity=0.360 Sum_probs=310.3
Q ss_pred CchHHHHHHHHhcCCCCCCCCccC--CCCCCCHHHHHHHHHHHHhcC-CcchhHHHhhhhhHHHHHHhcCCHHHHHHhhh
Q psy12318 44 KDLRKVWKDFGQLGLLGITVPEEF--GGSEMGYLDHVIAMEELSRSS-ASVGLSFVAHSNLCVNQINRHATKQQKEKYLP 120 (392)
Q Consensus 44 ~~~~~~~~~l~~~Gl~~~~~p~~~--GG~~~~~~~~~~~~~~la~~~-~s~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~ 120 (392)
|.++.+-+..+..|++.+++|... =|.|++..++..++|.+++.- ++-.+-...+.+.....+.+||+++|+++||-
T Consensus 27 p~iekLKE~aK~eGlWNLFlp~~~qkyg~GLtnveYa~icElmGrs~~APeVfNC~APDTGNMEvl~rYGseeQks~WL~ 106 (392)
T KOG1469|consen 27 PVIEKLKEMAKVEGLWNLFLPAVSQKYGAGLTNVEYAHICELMGRSFFAPEVFNCQAPDTGNMEVLHRYGSEEQKSQWLI 106 (392)
T ss_pred chHHHHHHHHHhcchHHhhhHHHHHhhccCccchhHHHHHHHhccccccchhccCCCCCCCCeeehhhhCCHHHHhhHhH
Confidence 333455555567999999999853 478999999999999999854 23233334445566789999999999999999
Q ss_pred HHhcCCeeEEEeecCCC-CCCCcCCceeEEEEeCCeEEEeeeEeeeeCC--CCCcEEEEEEEeCCCCCCCCCceEEEEEe
Q psy12318 121 ALCSGEKIGCLAMSEPG-SGSDVISMSLKAEKKGDMYVLNGNKFWITNG--PDADIAVVYARTNPNADKKQHGISTFIVE 197 (392)
Q Consensus 121 ~~~~g~~~~~~a~te~~-~gsd~~~~~~~a~~~~~g~~l~G~k~~vs~~--~~ad~~lv~a~~~~~~~~~~~~~~~~lV~ 197 (392)
+++.|+...||++|||. ++||..+++.+..++++.|++||+|||+||+ +.+.+.++..+++...-+.+...++.+||
T Consensus 107 PLLeG~irScFaMTEP~VASSDATNIe~SI~r~~~~YvINg~KWw~sga~~PkCrv~i~mGkt~~~~~~rhkQqSmiLVp 186 (392)
T KOG1469|consen 107 PLLEGNIRSCFAMTEPDVASSDATNIECSIRRDGDSYVINGKKWWISGAGDPKCRIAIFMGKTDNTSASRHKQQSMILVP 186 (392)
T ss_pred HHhcCCceeeEeecCCcccccccccceEEEEEcCCEEEEecceeeecCCCCCceEEEEEecccCCCccchhhcccEEEEe
Confidence 99999999999999998 6999999999999999999999999999999 56788899998876544467788999999
Q ss_pred CCCCCccccccccccCCCCCCc--EEEEEcceeeCCCCcccCCCccHHHHHHhhcHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy12318 198 KGTPGFSKGKKLNKLGMRGSNT--GELIFENCQVPAENLLGGENKGAYVLMSGLDLERLVISAGPVGIMQACCDFAFNYV 275 (392)
Q Consensus 198 ~~~~Gv~~~~~~~~~G~~~~~s--~~v~f~~v~Vp~~~~l~~~~~g~~~~~~~~~~~r~~~~a~~~G~a~~al~~~~~~~ 275 (392)
++.|||+|.++...+|....+. .+++|+||+||..+++-.+++|+...+..+..+|++.|+..+|.++++++...+.+
T Consensus 187 M~TpGvkiiRpltVfG~~DapgGH~Ei~F~~VrVP~~NmlLGeGrGFEIaQGRLGPGRiHHcMRliG~aERal~lm~~R~ 266 (392)
T KOG1469|consen 187 MNTPGVKIIRPLTVFGYTDAPGGHFEIHFENVRVPATNMLLGEGRGFEIAQGRLGPGRIHHCMRLIGLAERALQLMKERA 266 (392)
T ss_pred cCCCCeeEeeeeeeeccccCCCCcceEEEEEEEeeccceeecCCCcceeeccccCCcHHHHHHHHhhHHHHHHHHHHHHH
Confidence 9999999999999999987654 57999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC--CChHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Q psy12318 276 HERVQFGTRIGEFQLMQGKIADMHVALSASRAYLYSVAKACDRGS--INSKECAGVFLVAAENAVKVALEAIQCLGGNGY 353 (392)
Q Consensus 276 ~~r~~~g~~l~~~~~v~~~la~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~k~~~~~~a~~~~~~~~~~~Gg~g~ 353 (392)
.+|..||+++.++..+.+.||+...++|.+|.++..+++.+|.-. ....+++|+|+.+...+.++.+.++|.+||.|+
T Consensus 267 ~sRiaFgk~l~q~~s~~~diA~sRveiEqaRLLvLkAAh~mD~~G~k~Ak~~iAMiKv~AP~ma~kilD~AiQ~~G~aG~ 346 (392)
T KOG1469|consen 267 LSRIAFGKKLVQHGSVAHDIAESRVEIEQARLLVLKAAHSMDTLGNKGAKKEIAMIKVAAPNMASKILDRAIQVQGGAGV 346 (392)
T ss_pred HHHHHhcchhhhcchHHHHHHHHHhHhhhhhhhhhhhhhhhhhhcchhhhhheeeeeecCcHHHHHHHHHHHHHhcCCCC
Confidence 999999999999999999999999999999999999999999743 356688999999999999999999999999999
Q ss_pred cCCChHHHHHHhhccCcccCChHHHHHHHHHHHHhh
Q psy12318 354 INDYPTGRYLRDAKLYEIGAGTSEVRRIVIGRSINA 389 (392)
Q Consensus 354 ~~~~~l~r~~rd~~~~~~~~g~~~~~~~~l~~~~l~ 389 (392)
..+.|+.++|-.++.+.+.+|+.++++..+++.-+.
T Consensus 347 s~~~~la~l~~~~r~lriadgPd~vhL~ai~~le~~ 382 (392)
T KOG1469|consen 347 SSDTPLANLYAIARVLRIADGPDEVHLSAIAKLELR 382 (392)
T ss_pred CCCceeeEEEEEeeeEEeccCCCccchhhhhhhhHH
Confidence 999999999999999999999999999999886654
No 39
>PTZ00457 acyl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=5.5e-47 Score=365.97 Aligned_cols=298 Identities=24% Similarity=0.291 Sum_probs=265.5
Q ss_pred HHHHHHHhc-CCCCCCCCccCCCCCCCHHHHHHHHHHHHhcCCcchhHHHhhhhhHHHHHHhcCCHHHHHHhhhHHhcCC
Q psy12318 48 KVWKDFGQL-GLLGITVPEEFGGSEMGYLDHVIAMEELSRSSASVGLSFVAHSNLCVNQINRHATKQQKEKYLPALCSGE 126 (392)
Q Consensus 48 ~~~~~l~~~-Gl~~~~~p~~~GG~~~~~~~~~~~~~~la~~~~s~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~ 126 (392)
.+-+.+++. ||+++.+|++|||.|+++.++..+++++++.++++++.+..|..++...+..+|+++||++|||++.+|+
T Consensus 54 ~~~~~~~~l~Gl~gl~vPeeyGG~Gl~~~~~a~v~Eelgr~~~s~~l~~~~h~~l~~~~L~~~Gt~eqker~Lp~lasGe 133 (520)
T PTZ00457 54 QIRSNDKILGNLYGARIATEYGGLGLGHTAHALIYEEVGTNCDSKLLSTIQHSGFCTYLLSTVGSKELKGKYLTAMSDGT 133 (520)
T ss_pred HHHhchHhcCCccCCCCChhhCCCCCCHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCC
Confidence 333467788 9999999999999999999999999999998887766555665456678888999999999999999999
Q ss_pred eeEEEeecCCCCCCCcCCceeEEEEe-CCeEEEeeeEeeeeCCCCCcEEEEEEEeCCC---C-C-CCCCceEEEEEeCCC
Q psy12318 127 KIGCLAMSEPGSGSDVISMSLKAEKK-GDMYVLNGNKFWITNGPDADIAVVYARTNPN---A-D-KKQHGISTFIVEKGT 200 (392)
Q Consensus 127 ~~~~~a~te~~~gsd~~~~~~~a~~~-~~g~~l~G~k~~vs~~~~ad~~lv~a~~~~~---~-~-~~~~~~~~~lV~~~~ 200 (392)
.+++++++| ++|||...+.|+++++ +|+|+|||+|.|+ ++..||+++|++++++. + + ....++++|+||.+.
T Consensus 134 ~i~A~AltE-~aGSD~a~i~TtA~~~~gg~wvLNG~K~~t-~g~~Ad~~lV~Art~~~~~~~~g~~~~~git~FlV~~da 211 (520)
T PTZ00457 134 IMMGWATEE-GCGSDISMNTTKASLTDDGSYVLTGQKRCE-FAASATHFLVLAKTLTQTAAEEGATEVSRNSFFICAKDA 211 (520)
T ss_pred cEEEEEeCC-CCCCccccceeEEEEcCCCeEEEEEEEEEE-cCchhcEEEEEeecCCcccccccccCcCceEEEEEECCC
Confidence 999999998 8999999999999986 5579999999965 88999999999997531 1 0 013578999999999
Q ss_pred CCccccccccccCCCCCCcEEEEEcceeeCCCCcccCCCccHHHHHHhhcHHHHHHhHHHHHHHHHHHHHHHHHHHhhhh
Q psy12318 201 PGFSKGKKLNKLGMRGSNTGELIFENCQVPAENLLGGENKGAYVLMSGLDLERLVISAGPVGIMQACCDFAFNYVHERVQ 280 (392)
Q Consensus 201 ~Gv~~~~~~~~~G~~~~~s~~v~f~~v~Vp~~~~l~~~~~g~~~~~~~~~~~r~~~~a~~~G~a~~al~~~~~~~~~r~~ 280 (392)
|||++.+ ++|.|||| |.+++||.+++|+...+..++.+|+.+++.++|+++++++.+++|++
T Consensus 212 pGVtv~~------------~eV~FddV--P~~~vLG~~g~G~~~a~~~L~~~Rl~~aA~~vGia~~ale~av~ya~---- 273 (520)
T PTZ00457 212 KGVSVNG------------DSVVFENT--PAADVVGVVGEGFKDAMITLFTEQYLYAASLLGIMKRVVQELRGSNA---- 273 (520)
T ss_pred CceEEec------------CEEEECCC--CHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 9999853 59999997 99999999999999999999999999999999999999999999986
Q ss_pred cCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhCC-CCChHHHHHHHHHHH---HHHHHHHHHHHHHhcCCcccCC
Q psy12318 281 FGTRIGEFQLMQGKIADMHVALSASRAYLYSVAKACDRG-SINSKECAGVFLVAA---ENAVKVALEAIQCLGGNGYIND 356 (392)
Q Consensus 281 ~g~~l~~~~~v~~~la~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~k~~~~---~~a~~~~~~~~~~~Gg~g~~~~ 356 (392)
+|.+|++|++|.+.++++|++++.+++.+|.+ .+...+++++|+|++ +.+..++.+++| ++
T Consensus 274 -------~QaVq~~LAdma~~ieAarsl~y~AA~~~D~g~~d~~~eAa~ak~~~s~~~e~~~~~~~~~~~--------~~ 338 (520)
T PTZ00457 274 -------EEGATDTVASFACAMYAMESTLYALTANLDLPTEDSLLECTLVSAFVQSTTNQLLSILETATP--------PS 338 (520)
T ss_pred -------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHhhhhHHHHHHHhhhhcc--------CC
Confidence 47899999999999999999999999999987 457899999999999 888888888777 89
Q ss_pred ChHHHHHHhhccCcccCChHHHHH
Q psy12318 357 YPTGRYLRDAKLYEIGAGTSEVRR 380 (392)
Q Consensus 357 ~~l~r~~rd~~~~~~~~g~~~~~~ 380 (392)
+|+||++||++.+.+++|++++++
T Consensus 339 ~~~E~~~rd~ri~~i~egs~~~l~ 362 (520)
T PTZ00457 339 TTLEKCFANARLFLSMMESRDFLY 362 (520)
T ss_pred ccHHHHHHHHHHHHHhhhHHHHHH
Confidence 999999999999999999999988
No 40
>PLN02443 acyl-coenzyme A oxidase
Probab=100.00 E-value=1.1e-45 Score=368.76 Aligned_cols=295 Identities=24% Similarity=0.303 Sum_probs=259.3
Q ss_pred HHhhhhhHHHHHHhcCCHHHHHHhhhHHhcCCeeEEEeecCCCCCCCcCCceeEEEEe--CCeEEEe-----eeEeeeeC
Q psy12318 95 FVAHSNLCVNQINRHATKQQKEKYLPALCSGEKIGCLAMSEPGSGSDVISMSLKAEKK--GDMYVLN-----GNKFWITN 167 (392)
Q Consensus 95 ~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~te~~~gsd~~~~~~~a~~~--~~g~~l~-----G~k~~vs~ 167 (392)
+.+|..+.+..|..+|+++|+++|+|++.+|+.++|+++|||++|||+.+++|+|+++ +++|+|| |.|+|++|
T Consensus 99 ~~~~~~~f~~~I~~~GT~eQk~~~L~~~~~g~iig~fA~TE~ghGSdv~~leTtAt~d~~~~efvIntP~~~g~K~wig~ 178 (664)
T PLN02443 99 TDLHWGMFVPAIKGQGTEEQQKKWLPLAYKMQIIGCYAQTELGHGSNVQGLETTATFDPKTDEFVIHSPTLTSSKWWPGG 178 (664)
T ss_pred eeehHhHHHHHHHHhCCHHHHHHHHHHHhCCChheEEEecCCCcccchhhCeEEEEEeCCCCEEEECCCCCCEEEEeecC
Confidence 4556656777899999999999999999999999999999999999999999999998 6789998 99999999
Q ss_pred C-CCCcEEEEEEEeCCCCCCCCCceEEEEEeCC-------CCCccccccccccC---CCCCCcEEEEEcceeeCCCCccc
Q psy12318 168 G-PDADIAVVYARTNPNADKKQHGISTFIVEKG-------TPGFSKGKKLNKLG---MRGSNTGELIFENCQVPAENLLG 236 (392)
Q Consensus 168 ~-~~ad~~lv~a~~~~~~~~~~~~~~~~lV~~~-------~~Gv~~~~~~~~~G---~~~~~s~~v~f~~v~Vp~~~~l~ 236 (392)
+ ..|++++|+|++..++ +..|+.+|+||.+ .|||++.+.+.++| +++.+++.|.||||+||.+++|+
T Consensus 179 ~~~~A~~~vV~Arl~~~~--~~~Gv~~FlVp~r~~~~~~~~PGV~vgd~g~K~G~~~~~~~dng~l~Fd~VrVP~~nlLg 256 (664)
T PLN02443 179 LGKVSTHAVVYARLITNG--KDHGIHGFIVQLRSLDDHSPLPGVTVGDIGMKFGNGAYNTMDNGFLRFDHVRIPRDQMLM 256 (664)
T ss_pred CcccCCEEEEEEEECCCC--CCCCeEEEEEecCCcCcCCCCCCeEEeccccccCcccCCCCcceEEEeCcEEECHHHcCC
Confidence 7 6899999999986543 5678999999975 79999999999999 55688999999999999999997
Q ss_pred CCC----ccH--------HHHHHhhcHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhcCCCCc--cchh-----HHHHHHH
Q psy12318 237 GEN----KGA--------YVLMSGLDLERLVISAGPVGIMQACCDFAFNYVHERVQFGTRIG--EFQL-----MQGKIAD 297 (392)
Q Consensus 237 ~~~----~g~--------~~~~~~~~~~r~~~~a~~~G~a~~al~~~~~~~~~r~~~g~~l~--~~~~-----v~~~la~ 297 (392)
..+ .|. ......+..+|+.+++.++|.+++|++.+++|+..|+|||.|++ ++|. +|.+|++
T Consensus 257 ~~~~v~~~G~~~~~~~~~~~~~~~l~~~R~~i~a~a~g~~~~Al~iAvrYa~~R~QFg~~~~~~e~qii~y~~~Q~rL~~ 336 (664)
T PLN02443 257 RLSKVTREGKYVQSDVPRQLVYGTMVYVRQTIVADASTALSRAVCIATRYSAVRRQFGSQDGGPETQVIDYKTQQSRLFP 336 (664)
T ss_pred cccccCCCCceecccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccEeCCCCCCccchhhhhhHHHHHHHHH
Confidence 532 121 23345677889999999999999999999999999999999877 5554 4999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhC-------CCC-----ChHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCChHHHHHHh
Q psy12318 298 MHVALSASRAYLYSVAKACDR-------GSI-----NSKECAGVFLVAAENAVKVALEAIQCLGGNGYINDYPTGRYLRD 365 (392)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~-------~~~-----~~~~~~~~k~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~rd 365 (392)
+.+.+++++.+.+.+++..++ +.. ....++++|+++++.+.+++++++|+|||.||+.++++++++||
T Consensus 337 ~la~~~a~r~~~~~a~~~~~~~~~~~~~~~~~~~~e~h~~aa~~Ka~~t~~a~~~i~~~rq~cGG~Gy~~~~~l~~l~~d 416 (664)
T PLN02443 337 LLASAYAFRFVGEWLKWLYTDVTQRLEANDFSTLPEAHACTAGLKSLTTSATADGIEECRKLCGGHGYLCSSGLPELFAV 416 (664)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccccccCcHHHHHhh
Confidence 999999999999998887653 111 22347899999999999999999999999999999999999999
Q ss_pred hccCcccCChHHHHHHHHHHHHhhhc
Q psy12318 366 AKLYEIGAGTSEVRRIVIGRSINAEY 391 (392)
Q Consensus 366 ~~~~~~~~g~~~~~~~~l~~~~l~~~ 391 (392)
++...+++|++++++.+++|.+++.|
T Consensus 417 ~~~~~t~EGdn~Vl~~~iar~ll~~~ 442 (664)
T PLN02443 417 YVPACTYEGDNVVLLLQVARFLMKTV 442 (664)
T ss_pred hhcceeecCcHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998764
No 41
>KOG0135|consensus
Probab=100.00 E-value=3.5e-34 Score=264.96 Aligned_cols=337 Identities=25% Similarity=0.357 Sum_probs=287.0
Q ss_pred HHHHHhcCCCCCCCCccCCCCCCCHHHHHHHHHHHHhcCCcchhHHHhhhhhHHHHHHhcCCHHHHHHhhhHHhcCCeeE
Q psy12318 50 WKDFGQLGLLGITVPEEFGGSEMGYLDHVIAMEELSRSSASVGLSFVAHSNLCVNQINRHATKQQKEKYLPALCSGEKIG 129 (392)
Q Consensus 50 ~~~l~~~Gl~~~~~p~~~GG~~~~~~~~~~~~~~la~~~~s~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~ 129 (392)
|..|.+.|.+....-+. |.+ +..-...+.|.++-+|.|++.-+.+|..+.+..+..+|++..++ |+..+-+-+..+
T Consensus 83 ~~~l~~~gv~~~~~~~~--~~~-~~~k~~al~E~lg~yd~sls~K~~lh~~lfg~AV~~~GT~rH~~-yi~~~~n~ev~g 158 (661)
T KOG0135|consen 83 IKRLVELGVFKFWLVED--GPE-AELKKFALTEALGIYDQSLSAKLGLHFLLFGNAVKSMGTKRHHD-YIQKTENYEVKG 158 (661)
T ss_pred HHHHHHhccCcceeecC--chH-HHHHHHHHHHHHhhcCcchhhhhhhhhhhhhHHHHhhccHHHHH-HHhhhhcceeee
Confidence 45555556665444332 111 34467888999999999999999999988999999999999998 999999999999
Q ss_pred EEeecCCCCCCCcCCceeEEEEe--CCeEEEe-----eeEeeeeCC-CCCcEEEEEEEeCCCCCCCCCceEEEEEeCCC-
Q psy12318 130 CLAMSEPGSGSDVISMSLKAEKK--GDMYVLN-----GNKFWITNG-PDADIAVVYARTNPNADKKQHGISTFIVEKGT- 200 (392)
Q Consensus 130 ~~a~te~~~gsd~~~~~~~a~~~--~~g~~l~-----G~k~~vs~~-~~ad~~lv~a~~~~~~~~~~~~~~~~lV~~~~- 200 (392)
|||+||-++||+..+++|+|+.| .+.|++| ..|.||.|+ .+|++.+|+++...++ ...|+..|+||..+
T Consensus 159 cfamTEl~HGSNt~~I~TtatyDP~t~EfVinTP~~~A~K~WiGn~a~~athavvfa~L~~~g--~n~G~H~FiiqIRdp 236 (661)
T KOG0135|consen 159 CFAMTELGHGSNTKGIQTTATYDPTTEEFVINTPDFSAIKCWIGNAAKHATHAVVFAQLHVPG--QNHGLHGFIIQIRDP 236 (661)
T ss_pred eEEEeeecCCccccceeeeeeecCCCCeeEecCCcHHHHHHHhccccccceEEEEEEEeeecC--ccCceeeEEEEeecc
Confidence 99999999999999999999988 5789997 589999998 5799999999986554 66889999999754
Q ss_pred ------CCccccccccccCCCCCCcEEEEEcceeeCCCCcccCCC----------------ccHHHHHHhhcHHHHHHhH
Q psy12318 201 ------PGFSKGKKLNKLGMRGSNTGELIFENCQVPAENLLGGEN----------------KGAYVLMSGLDLERLVISA 258 (392)
Q Consensus 201 ------~Gv~~~~~~~~~G~~~~~s~~v~f~~v~Vp~~~~l~~~~----------------~g~~~~~~~~~~~r~~~~a 258 (392)
|||.|.+..++.|+.|.+++-+.|+||+||.+++|...+ +.+.....-+..+|++++.
T Consensus 237 kT~~t~PgV~igD~G~K~GlnGVDNG~l~F~nvRIPRenLLNr~gDVtpDG~YvSs~k~~~qrfgA~L~~Ls~GRvgIa~ 316 (661)
T KOG0135|consen 237 KTLQTLPGVRIGDCGHKIGLNGVDNGFLWFDNVRIPRENLLNRFGDVTPDGKYVSSFKDPSQRFGASLGSLSSGRVGIAS 316 (661)
T ss_pred cccCCCCCceecccccccccccccCceEEEecccCchHHHhhhccCcCCCCeeeccCCChhhhhchhhcccccchhHHHH
Confidence 899999999999999999999999999999999994321 2333456678899999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcCC-------CCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhCC----------CC
Q psy12318 259 GPVGIMQACCDFAFNYVHERVQFGT-------RIGEFQLMQGKIADMHVALSASRAYLYSVAKACDRG----------SI 321 (392)
Q Consensus 259 ~~~G~a~~al~~~~~~~~~r~~~g~-------~l~~~~~v~~~la~~~~~~~~~~~~~~~~~~~~~~~----------~~ 321 (392)
.++|.++-++..+++|...|+|||. ++.++|..|.+|-...+...++.-...+......+. .+
T Consensus 317 ~ai~~lkla~tIAIRYS~sRRQFGP~~~geEv~iLeYp~qQ~RL~P~LAaaya~~fas~~l~~~y~E~~~~~~~~~n~ke 396 (661)
T KOG0135|consen 317 SAIGALKLALTIAIRYSLSRRQFGPTKNGEEVPILEYPSQQYRLLPYLAAAYALSFASKYLVMIYVERTPRTNEGVNSKE 396 (661)
T ss_pred HHHHHHHHHHHHhhhhHHhHhhhCCCCCCCcceeeechhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccchhH
Confidence 9999999999999999999999984 567999999999888887777766655554433321 12
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCChHHHHHHhhccCcccCChHHHHHHHHHHHHhhhcC
Q psy12318 322 NSKECAGVFLVAAENAVKVALEAIQCLGGNGYINDYPTGRYLRDAKLYEIGAGTSEVRRIVIGRSINAEYK 392 (392)
Q Consensus 322 ~~~~~~~~k~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~rd~~~~~~~~g~~~~~~~~l~~~~l~~~~ 392 (392)
....++..|.+++-...++.++|.+.|||.||...+.+...--|--.+.+++|+|.++.++.++++|++|+
T Consensus 397 iHALsSg~K~~~TW~~~~~LqecREAcGGhGYl~~nRlg~Lr~D~D~~~TfEGDNnVLlQqvsn~LL~~y~ 467 (661)
T KOG0135|consen 397 IHALSSGLKPVATWHNMRALQECREACGGHGYLQENRLGQLRDDHDPFQTFEGDNNVLLQQVSNALLAQYV 467 (661)
T ss_pred HHHHHhccchhhhHhhHHHHHHHHHHhccchHHHHHHhcccccCCCccceeecCceeHHHHHHHHHHHHHH
Confidence 34566788999999999999999999999999999999999999999999999999999999999999873
No 42
>TIGR02309 HpaB-1 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component. This gene for this monooxygenase is found within apparent operons for the degradation of 4-hydroxyphenylacetic acid in Deinococcus, Thermus and Oceanobacillus. Phylogenetic trees support inclusion of the Bacillus halodurans sequence above trusted although the complete 4-hydroxyphenylacetic acid degradation pathway may not exist in that organism. Generally, this enzyme acts with the assistance of a small flavin reductase domain protein (HpaC) to provide the cycle the flavin reductant for the reaction. This family of sequences is a member of a larger subfamily of monooxygenases (pfam03241).
Probab=99.95 E-value=1.5e-26 Score=223.39 Aligned_cols=233 Identities=18% Similarity=0.183 Sum_probs=193.9
Q ss_pred HHHHhhhHHhcCCeeEEEeecCCCCC-----CCcCCcee--E-EEEeCCeEEEeeeEeeeeCCCCCcEEEEEEEeCCCCC
Q psy12318 114 QKEKYLPALCSGEKIGCLAMSEPGSG-----SDVISMSL--K-AEKKGDMYVLNGNKFWITNGPDADIAVVYARTNPNAD 185 (392)
Q Consensus 114 ~~~~~l~~~~~g~~~~~~a~te~~~g-----sd~~~~~~--~-a~~~~~g~~l~G~k~~vs~~~~ad~~lv~a~~~~~~~ 185 (392)
-...|+..+.+.++..+.+++.|... +...++.. + ++++++||+|||.|.|+|++ .||+++|++++....+
T Consensus 128 n~~~y~~~~~~~dl~~~~a~~dp~~dRs~~~~~~~d~~~~~~Vve~~~dGiVV~GaK~~~T~~-~ad~~~V~~~~~~~~~ 206 (477)
T TIGR02309 128 NVRNYYEYLRDNDLALTHALTNPQVNRAKPPSEQPDPYIALGVVEQTDKGVIVRGARMTATFP-IADEILIFPSTVLKAG 206 (477)
T ss_pred HHHHHHHHHHHhCceeeccccCCCCCCCCChhhcCCCCcceeEEEEcCCCEEEeCHHHhhhhc-ccceEEEeccCCCCCc
Confidence 35689999999999999999999631 11223322 4 35678999999999999996 9999999998765321
Q ss_pred CCCC-ceEEEEEeCCCCCccccccccccCCCCC-----------CcEEEEEcceeeCCCCc--ccCC---CccHHHHHHh
Q psy12318 186 KKQH-GISTFIVEKGTPGFSKGKKLNKLGMRGS-----------NTGELIFENCQVPAENL--LGGE---NKGAYVLMSG 248 (392)
Q Consensus 186 ~~~~-~~~~~lV~~~~~Gv~~~~~~~~~G~~~~-----------~s~~v~f~~v~Vp~~~~--l~~~---~~g~~~~~~~ 248 (392)
++.. -.+.|+||.++|||++......+|.++. ..+.|.|||||||+++| +|.+ +.++...
T Consensus 207 ~~~~~ya~~F~VP~dtpGl~~i~r~~~~~~~~~~D~plssrfde~da~vvFDdV~VPwe~VF~~g~~e~a~~~f~~~--- 283 (477)
T TIGR02309 207 AEKDPYALAFAIPTNTPGLHFVCREALDGGDSPFDHPLSSRFEEMDALVIFDDVLVPWERIFILGDVELCNNAYAAT--- 283 (477)
T ss_pred cCCCCeEEEEEeeCCCCceEEEeCCccCCCCCcccCccccccCCCeEEEEeCceeccHHHhhhcCCHHHHHHHHHHH---
Confidence 1122 2689999999999999998888888876 66899999999999999 6766 5444322
Q ss_pred hcHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC-----CCh
Q psy12318 249 LDLERLVISAGPVGIMQACCDFAFNYVHERVQFGTRIGEFQLMQGKIADMHVALSASRAYLYSVAKACDRGS-----INS 323 (392)
Q Consensus 249 ~~~~r~~~~a~~~G~a~~al~~~~~~~~~r~~~g~~l~~~~~v~~~la~~~~~~~~~~~~~~~~~~~~~~~~-----~~~ 323 (392)
..+...+..++|.+..+++.++.++.. .+++.++.++|.||++|+++.+.+++++++++.+++..+.+. +..
T Consensus 284 --~~~~~~~~~~~g~~~~~ld~~~g~a~~-~a~~~gi~~~q~VQ~kLAEm~~~~Ea~ral~~aAa~~~~~~~~G~~~P~~ 360 (477)
T TIGR02309 284 --GAVNHMAHQVVALKIAKTEAFLGVAAL-MAEGIGADGFQHVQEKIAEIIVYLEAMKAFWTRAEEEAKENAYGLMTPDR 360 (477)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhCcccchHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCCCcccCCH
Confidence 223666888999999999999999999 899999999999999999999999999999999999998843 457
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCccc
Q psy12318 324 KECAGVFLVAAENAVKVALEAIQCLGGNGYI 354 (392)
Q Consensus 324 ~~~~~~k~~~~~~a~~~~~~~~~~~Gg~g~~ 354 (392)
..++++|+++++...++. .++|++||.|++
T Consensus 361 ~~as~aKl~~~e~~~rv~-~alq~lGG~G~~ 390 (477)
T TIGR02309 361 GALDAARNLYPRLYPRLR-EILEQLGASGLI 390 (477)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHhCCcEE
Confidence 889999999999999995 999999999986
No 43
>KOG0136|consensus
Probab=99.93 E-value=1.3e-24 Score=206.18 Aligned_cols=304 Identities=23% Similarity=0.267 Sum_probs=245.6
Q ss_pred hcCCcchhHHHhhhhhHHHHHHhcCCHHHHHHhhhHHhcCCeeEEEeecCCCCCCCcCCceeEEEEeC--CeEEEe----
Q psy12318 86 RSSASVGLSFVAHSNLCVNQINRHATKQQKEKYLPALCSGEKIGCLAMSEPGSGSDVISMSLKAEKKG--DMYVLN---- 159 (392)
Q Consensus 86 ~~~~s~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~te~~~gsd~~~~~~~a~~~~--~g~~l~---- 159 (392)
.....-+..+..|..+....|..-+++||.++|+++....+.++|.|-||-|+|+++..++|+|+.+. +.|+||
T Consensus 102 ~~~~~~~~pl~lH~~MFvp~l~~q~t~EQ~~~Wl~~a~~~~IiGtYAQTElGHGTnl~~LET~AtyD~~T~eFVl~TPt~ 181 (670)
T KOG0136|consen 102 RVLGQEGHPLALHYGMFVPTLKGQGTDEQQEKWLSRALNMEIIGTYAQTELGHGTNLRGLETTATYDPKTQEFVLNTPTL 181 (670)
T ss_pred hccccCCchhhhhhhhhhhHhhcCCCHHHHHHHHHhcccceEEEeehhhhhcccccccccceeeeecCCcceEEecCCCc
Confidence 34444456777898888999999999999999999999999999999999999999999999999875 469986
Q ss_pred -eeEeeeeCC-CCCcEEEEEEEeCCCCCCCCCceEEEEEeCCC-------CCccccccccccCCCCCCcEEEEEcceeeC
Q psy12318 160 -GNKFWITNG-PDADIAVVYARTNPNADKKQHGISTFIVEKGT-------PGFSKGKKLNKLGMRGSNTGELIFENCQVP 230 (392)
Q Consensus 160 -G~k~~vs~~-~~ad~~lv~a~~~~~~~~~~~~~~~~lV~~~~-------~Gv~~~~~~~~~G~~~~~s~~v~f~~v~Vp 230 (392)
..|||..+. ..++|.+|.|+..-.+ ...|+..|+||..+ |||++.+.-.+||+.+.+++-+.||||+||
T Consensus 182 ta~KWWPGgLG~ssnhAvV~AqL~~~g--k~~G~h~FiV~lRd~~th~pL~Gi~iGDIG~Kmg~ng~dNGfL~f~nvRIP 259 (670)
T KOG0136|consen 182 TATKWWPGGLGKSSNHAVVVAQLITKG--KCYGPHPFIVQLRDEDTHKPLPGITVGDIGPKMGFNGVDNGFLGFDNVRIP 259 (670)
T ss_pred ceecccCCccccccchheeeeeeeecc--cccccceeEEEccCccccCCCCCCeecCCCccccccCCccceeeecceeec
Confidence 789998877 4678999999986554 66888999999753 899999999999999999999999999999
Q ss_pred CCCcccCC----CccH-------HHHHHhhcHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhcC-------CCCccchhHH
Q psy12318 231 AENLLGGE----NKGA-------YVLMSGLDLERLVISAGPVGIMQACCDFAFNYVHERVQFG-------TRIGEFQLMQ 292 (392)
Q Consensus 231 ~~~~l~~~----~~g~-------~~~~~~~~~~r~~~~a~~~G~a~~al~~~~~~~~~r~~~g-------~~l~~~~~v~ 292 (392)
.+++|-+- .+|. ......+-..|..+..-..-....|.-.+.+|+.-|+|+. ..+.++|+.|
T Consensus 260 R~nmLmr~~kV~~dGtyv~p~~~~l~Y~tMv~vRs~mv~d~a~~La~A~tIAtRYSaVRRQ~~i~pg~~E~qIlDyqTQQ 339 (670)
T KOG0136|consen 260 RTNMLMRHAKVEPDGTYVKPPHPKLGYGTMVYVRSLMVMDQARFLAKAATIATRYSAVRRQSEIRPGQPEVQILDYQTQQ 339 (670)
T ss_pred hHhhhhhhheecCCCccccCCccccceeeeEEEeehhHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCceeeechhHH
Confidence 99998431 1111 1112223344555555555666778889999999999873 2478999999
Q ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHhhCCC-----CChHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCChHH
Q psy12318 293 GKIADMHVALSASRAYLY-------SVAKACDRGS-----INSKECAGVFLVAAENAVKVALEAIQCLGGNGYINDYPTG 360 (392)
Q Consensus 293 ~~la~~~~~~~~~~~~~~-------~~~~~~~~~~-----~~~~~~~~~k~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l~ 360 (392)
.+|=...+...+-+.... .+...++++. +.....+.+|+.++..+-+-+++|...|||.||+.-+.+.
T Consensus 340 ~rlFP~LA~ayAf~~~g~~l~~~Y~~~~~~l~~g~~s~LpeLHaLS~gLKa~~T~~~~~GIE~~R~aCGGHGYs~~Sglp 419 (670)
T KOG0136|consen 340 YRLFPQLARAYAFRFVGEELWELYEDVLKELENGNFSRLPELHALSAGLKAVVTWDTAQGIEQCRLACGGHGYSQASGLP 419 (670)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhchHHHHHHhhhHHHhhhhhhhHHHHHHHhcCCccchhhcCCc
Confidence 998666665555444433 3334444442 3445677899999999999999999999999999999999
Q ss_pred HHHHhhccCcccCChHHHHHHHHHHHHhhhc
Q psy12318 361 RYLRDAKLYEIGAGTSEVRRIVIGRSINAEY 391 (392)
Q Consensus 361 r~~rd~~~~~~~~g~~~~~~~~l~~~~l~~~ 391 (392)
.+|-..-..=++||.|-|+..++||.+++.|
T Consensus 420 ~iY~~~v~~CTYEGEN~VmlLQ~ARfLmKs~ 450 (670)
T KOG0136|consen 420 EIYGVAVGACTYEGENTVLLLQVARFLVKSY 450 (670)
T ss_pred cceeeeeeeeeeeccceeehHHHHHHHHHHH
Confidence 9999999999999999999999999999875
No 44
>PF00441 Acyl-CoA_dh_1: Acyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR006090 Mammalian Co-A dehydrogenases (1.3.99.3 from EC) are enzymes that catalyse the first step in each cycle of beta-oxidation in mitochondion. Acyl-CoA dehydrogenases [, , ] catalyze the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with concommitant reduction of enzyme-bound FAD. Reoxidation of the flavin involves transfer of electrons to ETF (electron transfering flavoprotein). These enzymes are homodimers containing one molecule of FAD. The monomeric enzyme is folded into three domains of approximately equal size. The N-terminal and the C-terminal are mainly alpha-helices packed together, and the middle domain consists of two orthogonal beta-sheets. The flavin ring is buried in the crevise between two alpha-helical domains and the beta-sheet of one subunit, and the adenosine pyrophosphate moiety is stretched into the subunit junction with one formed by two C-terminal domains []. The C-terminal domain of Acyl-CoA dehydrogenase is an all-alpha, four helical up-and-down bundle.; GO: 0016627 oxidoreductase activity, acting on the CH-CH group of donors, 0055114 oxidation-reduction process; PDB: 2EBA_A 1RX0_C 1R2J_A 2OKU_A 3MKH_C 2JIF_C 3GQT_D 3EON_D 3EOM_C 3D6B_A ....
Probab=99.92 E-value=1.9e-23 Score=173.36 Aligned_cols=150 Identities=37% Similarity=0.514 Sum_probs=146.5
Q ss_pred CccHHHHHHhhcHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q psy12318 239 NKGAYVLMSGLDLERLVISAGPVGIMQACCDFAFNYVHERVQFGTRIGEFQLMQGKIADMHVALSASRAYLYSVAKACDR 318 (392)
Q Consensus 239 ~~g~~~~~~~~~~~r~~~~a~~~G~a~~al~~~~~~~~~r~~~g~~l~~~~~v~~~la~~~~~~~~~~~~~~~~~~~~~~ 318 (392)
++|+..+...+...|+.+++.++|.++.+++.+.+|+++|.++|+++.++|.++.+++++..++++++++++++++.++.
T Consensus 1 g~G~~~~~~~l~~~R~~~~~~~~g~~~~~l~~a~~~~~~r~~~g~~l~~~~~v~~~la~~~~~~~a~~~~~~~~~~~~~~ 80 (150)
T PF00441_consen 1 GQGWAVALDTLNHERLMIAAMALGIARRALDEAIEYARRRRQFGKPLAEHPAVRRRLADMAARLEAMRALVYRAARRLDA 80 (150)
T ss_dssp TBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccchhhhHHHHHhhccchhhhhcccccccccccc
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCChHHHHHHhhccCcccCChHHHHHHHHHHHHh
Q psy12318 319 GSINSKECAGVFLVAAENAVKVALEAIQCLGGNGYINDYPTGRYLRDAKLYEIGAGTSEVRRIVIGRSIN 388 (392)
Q Consensus 319 ~~~~~~~~~~~k~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~rd~~~~~~~~g~~~~~~~~l~~~~l 388 (392)
+.....+.+++|+++++.+.++++.+++++|+.|+.++++++++|||++.+++++|++++++..++|.+|
T Consensus 81 ~~~~~~~~a~~K~~~t~~~~~~~~~~~~l~G~~g~~~~~~l~~~~rda~~~~i~~G~~ev~~~~ia~~~l 150 (150)
T PF00441_consen 81 GQNDPVEAAIAKYFATELAQDIAEEAMQLLGGRGLTEDNPLERLYRDARAFTIYGGTNEVQRNQIARRLL 150 (150)
T ss_dssp TSSTHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGBTTSSHHHHHHHHHHGGTSTSTHHHHHHHHHHHHH
T ss_pred ccccccccchhhhhcccccccchhhhhhhhhhhhhcccCHHHHHHhhcceeeeccCCHHHHHHHHHHHhC
Confidence 8888999999999999999999999999999999999999999999999999999999999999999986
No 45
>PF02771 Acyl-CoA_dh_N: Acyl-CoA dehydrogenase, N-terminal domain; InterPro: IPR006092 Mammalian Co-A dehydrogenases (1.3.99.3 from EC) are enzymes that catalyse the first step in each cycle of beta-oxidation in mitochondion. Acyl-CoA dehydrogenases [, , ] catalyze the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with concommitant reduction of enzyme-bound FAD. Reoxidation of the flavin involves transfer of electrons to ETF (electron transfering flavoprotein). These enzymes are homodimers containing one molecule of FAD. The monomeric enzyme is folded into three domains of approximately equal size. The N-terminal and the C-terminal are mainly alpha-helices packed together, and the middle domain consists of two orthogonal beta-sheets. The flavin ring is buried in the crevise between two alpha-helical domains and the beta-sheet of one subunit, and the adenosine pyrophosphate moiety is stretched into the subunit junction with one formed by two C-terminal domains []. The N-terminal domain of Acyl-CoA dehydrogenase is an all-alpha domain, on dimerisation, the N-terminal of one molecule extends into the other dimer and lies on the surface of the molecule.; GO: 0003995 acyl-CoA dehydrogenase activity, 0055114 oxidation-reduction process; PDB: 2WBI_B 1SIQ_A 1SIR_A 2R0N_A 2R0M_A 2DVL_A 1UKW_B 3MDD_B 1UDY_C 3MDE_B ....
Probab=99.78 E-value=6.8e-19 Score=138.61 Aligned_cols=113 Identities=42% Similarity=0.738 Sum_probs=105.6
Q ss_pred CHHHHHHHHHHHHHHhhccCchhhhhcccCCCCchHHHHHHHHhcCCCCCCCCccCCCCCCCHHHHHHHHHHHHhcCCcc
Q psy12318 12 TEEQNKLRETVASYCKTHITPIAADIDSTNDFKDLRKVWKDFGQLGLLGITVPEEFGGSEMGYLDHVIAMEELSRSSASV 91 (392)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~p~~~GG~~~~~~~~~~~~~~la~~~~s~ 91 (392)
|++++++++.+++|+.+++.+...+.|+++.||. ++|+.+++.||+++.+|+++||.+.++.+...+++++++.|.++
T Consensus 1 t~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~p~--~~~~~l~~~G~~~~~~p~~~GG~~~~~~~~~~~~e~l~~~~~~~ 78 (113)
T PF02771_consen 1 TEEQQALREEAREFAEEEIAPHAAEWDEDGRFPR--EVWRALGEAGLLGLAVPEEYGGLGLSPLELAIVLEELARADASL 78 (113)
T ss_dssp SHHHHHHHHHHHHHHHHHTHHHHHHHHHHTSCHH--HHHHHHHHTTTTSTTSCGGGTSEB-THHHHHHHHHHHHHHTHHH
T ss_pred CHHHHHHHHHHHHHHHHHchHHHHHHHHhCCCCH--HHHHHHHHHHHhhhhccccccCcchhhhhHHHHHHhhhhhcccc
Confidence 6899999999999999999999999987779998 99999999999999999999999999999999999999999999
Q ss_pred hhHHHhhhhhHHHHHHhcCCHHHHHHhhhHHhcCC
Q psy12318 92 GLSFVAHSNLCVNQINRHATKQQKEKYLPALCSGE 126 (392)
Q Consensus 92 ~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~ 126 (392)
++.+.+|..+++..|..+|+++|+++|+|++++|+
T Consensus 79 ~~~~~~~~~l~~~~i~~~gs~eq~~~~lp~~~~Ge 113 (113)
T PF02771_consen 79 AFALGVHQSLGAPPIAKFGSEEQKEKWLPRLASGE 113 (113)
T ss_dssp HHHHHHHHHCHHHHHHHHSHHHHHHHHHHHHHTTS
T ss_pred cchhhhhhHHHHHHHHHHCCHHHHHHHhHHHhCCC
Confidence 99888887567789999999999999999999986
No 46
>PF08028 Acyl-CoA_dh_2: Acyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR013107 Acyl Co-A dehydrogenases (1.3.99.3 from EC) are enzymes that catalyse the first step in each cycle of beta-oxidation in mitochondion. Acyl-CoA dehydrogenases [, , ] catalyze the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with concommitant reduction of enzyme-bound FAD. Reoxidation of the flavin involves transfer of electrons to ETF (electron transfering flavoprotein). These enzymes are homodimers containing one molecule of FAD. The monomeric enzyme is folded into three domains of approximately equal size. The N-terminal and the C-terminal are mainly alpha-helices packed together, and the middle domain consists of two orthogonal beta-sheets. The flavin ring is buried in the crevise between two alpha-helical domains and the beta-sheet of one subunit, and the adenosine pyrophosphate moiety is stretched into the subunit junction with one formed by two C-terminal domains []. The C-terminal domain of Acyl-CoA dehydrogenase is an all-alpha, four helical up-and-down bundle.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3AFE_C 3AFF_A 2JBT_D 2JBS_C 2JBR_B 2RFQ_B 2OR0_B.
Probab=99.68 E-value=7.7e-16 Score=124.94 Aligned_cols=123 Identities=22% Similarity=0.253 Sum_probs=108.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHhhhh--cCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhh----CCCC----Ch
Q psy12318 254 LVISAGPVGIMQACCDFAFNYVHERVQ--FGTRIGEFQLMQGKIADMHVALSASRAYLYSVAKACD----RGSI----NS 323 (392)
Q Consensus 254 ~~~~a~~~G~a~~al~~~~~~~~~r~~--~g~~l~~~~~v~~~la~~~~~~~~~~~~~~~~~~~~~----~~~~----~~ 323 (392)
+.+++.++|+++++++.+.+++++|.. .+.++.+.|.+|.+|+++...+++++++++.+++.++ .+.+ ..
T Consensus 1 L~~aa~~lG~A~~al~~~~~~~~~r~~~~~~~~~~~~p~~q~~lgea~~~~~aa~~~l~~~~~~~~~~~~~g~~~~~~~~ 80 (134)
T PF08028_consen 1 LSFAAVYLGIARGALDEFVEYLRGRVRASGGAPLADDPYIQARLGEAAARLDAARALLYRAARRLWEAADAGEELTPEER 80 (134)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSBCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----HHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCchhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCHHHH
Confidence 468999999999999999999999887 6789999999999999999999999999999999854 4433 23
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCChHHHHHHhhccCcccCChH
Q psy12318 324 KECAGVFLVAAENAVKVALEAIQCLGGNGYINDYPTGRYLRDAKLYEIGAGTS 376 (392)
Q Consensus 324 ~~~~~~k~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~rd~~~~~~~~g~~ 376 (392)
......|.++.+.+.++++.+++++|+.++.+++|++|+|||+++...|...+
T Consensus 81 ~~~~~~~~~a~~~a~~av~~l~~~~G~~a~~~~~pl~R~~RD~~~~~~H~~~~ 133 (134)
T PF08028_consen 81 ARLRAAKAHAARLAREAVDRLFRLAGGSALYRSSPLERIWRDVRAGAQHPALN 133 (134)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCSGGGGGBTTSHHHHHHHHHHHHTTSGGG-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhChHhhhcCCcHHHHHHHHHHHhhCcccC
Confidence 45567899999999999999999999999999999999999999999998754
No 47
>COG2368 Aromatic ring hydroxylase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.65 E-value=1.7e-14 Score=134.30 Aligned_cols=235 Identities=17% Similarity=0.147 Sum_probs=162.9
Q ss_pred HHHHhhhHHhcCCeeEEEeecCCCCC-----CCcC--CceeEE-EEeCCeEEEeeeEeeeeCCCCCcEEEEEEEeCCCCC
Q psy12318 114 QKEKYLPALCSGEKIGCLAMSEPGSG-----SDVI--SMSLKA-EKKGDMYVLNGNKFWITNGPDADIAVVYARTNPNAD 185 (392)
Q Consensus 114 ~~~~~l~~~~~g~~~~~~a~te~~~g-----sd~~--~~~~~a-~~~~~g~~l~G~k~~vs~~~~ad~~lv~a~~~~~~~ 185 (392)
-...|+..+...++..+.|+|.|... +... .+-.++ +..++|.+|+|.|..+|+++.+|.++|+-...-..+
T Consensus 132 n~~~~~k~vqk~DL~~~hA~tdpk~dRsk~p~e~~dpdiyvrVvee~~dGIVVrGAK~~aT~~a~tdei~V~Pt~~~~~~ 211 (493)
T COG2368 132 NAREYYKEVQKNDLALTHAITDPKGDRSKRPSEQKDPDIYVRVVEETEDGIVVRGAKALATGSALTDEIFVLPTRSMQED 211 (493)
T ss_pred HHHHHHHHHHhcCceeeeceecCCccCCCChhhccCCCeeEEEEEEecCceEEEChHHHhccccccceEEEeeccccCCC
Confidence 35589999999999999999999631 1122 123343 356899999999999999999999999843221111
Q ss_pred CCCCceEEEEEeCCCCCccccccc---cccCCCCCC------------cEEEEEcceeeCCCCcccCCC----ccHHHHH
Q psy12318 186 KKQHGISTFIVEKGTPGFSKGKKL---NKLGMRGSN------------TGELIFENCQVPAENLLGGEN----KGAYVLM 246 (392)
Q Consensus 186 ~~~~~~~~~lV~~~~~Gv~~~~~~---~~~G~~~~~------------s~~v~f~~v~Vp~~~~l~~~~----~g~~~~~ 246 (392)
...-...|.+|.++|||++.... ..-|+.+.+ -+-|.|||||||+++|+--.. ..+....
T Consensus 212 -d~dfAv~FaiP~dt~GvK~i~r~s~~~~~~~~~g~fd~plssrfde~dailVfDdVfVPWERVf~y~d~~~~~~~~~~~ 290 (493)
T COG2368 212 -DKDFAVAFAIPMDTEGVKFICRRSYELGRGAEGGPFDYPLSSRFDENDAILVFDDVFVPWERVFIYRDLERAYAWYAVS 290 (493)
T ss_pred -CCceEEEEEcccCCCceEEEecCcchhhcccCCCCCCCccccccccCceEEEecccccchhheeeeccHHHHHHHHHHH
Confidence 23445689999999999887543 122211111 234999999999999994332 2222223
Q ss_pred HhhcHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC-----C
Q psy12318 247 SGLDLERLVISAGPVGIMQACCDFAFNYVHERVQFGTRIGEFQLMQGKIADMHVALSASRAYLYSVAKACDRGS-----I 321 (392)
Q Consensus 247 ~~~~~~r~~~~a~~~G~a~~al~~~~~~~~~r~~~g~~l~~~~~v~~~la~~~~~~~~~~~~~~~~~~~~~~~~-----~ 321 (392)
.+..++|...+.+-.+...-.+-.+...++. ..+.++++||.+|+||.+..+.++++...++....... |
T Consensus 291 ~Fa~~~~~q~~~~k~~k~d~i~G~~~~~~~~-----~Gv~~~~hIq~kl~Emi~~~e~~~al~~Aa~~~a~~~~~G~~~P 365 (493)
T COG2368 291 GFARLHRQQAVGRKAVKLDFILGAAYLIAET-----NGVEEFRHIQEKLGEMIALLELMWALSDAAAEEAQKNPNGAWLP 365 (493)
T ss_pred HHHHHhhhhhhhhhHHHHHHHHHHHHHHHHh-----hCccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCceec
Confidence 3333444444444444444333333222221 23678999999999999999999999999998877643 5
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc
Q psy12318 322 NSKECAGVFLVAAENAVKVALEAIQCLGGNGYI 354 (392)
Q Consensus 322 ~~~~~~~~k~~~~~~a~~~~~~~~~~~Gg~g~~ 354 (392)
....+...|.++.+.-.++...+.++.||.-.+
T Consensus 366 n~~~~n~~r~~~~~~~~~~~~~l~~i~gg~~i~ 398 (493)
T COG2368 366 NPAYANVGRVYAPKAYPRIKEILQDISGGGIIT 398 (493)
T ss_pred CHHHHhhHHHhcccchHHHHHHHHHHhcCceee
Confidence 677888999999999999999999998875544
No 48
>TIGR02310 HpaB-2 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component. This gene for this monooxygenase is found within apparent operons for the degradation of 4-hydroxyphenylacetic acid in Shigella, Photorhabdus and Pasteurella. The family modelled by this alignment is narrowly limited to gammaproteobacteria to exclude other aromatic hydroxylases involved in various secondary metabolic pathways. Generally, this enzyme acts with the assistance of a small flavin reductase domain protein (HpaC) to provide the cycle the flavin reductant for the reaction. This family of sequences is a member of a larger subfamily of monooxygenases (pfam03241).
Probab=99.59 E-value=4.8e-13 Score=129.27 Aligned_cols=232 Identities=13% Similarity=0.036 Sum_probs=151.7
Q ss_pred HHHHHhhhHHhcCCeeEEEeecCCCCC-C----CcCCceeEE-EEeCCeEEEeeeEeeeeCCCCCcEEEEEEEeCC-CCC
Q psy12318 113 QQKEKYLPALCSGEKIGCLAMSEPGSG-S----DVISMSLKA-EKKGDMYVLNGNKFWITNGPDADIAVVYARTNP-NAD 185 (392)
Q Consensus 113 ~~~~~~l~~~~~g~~~~~~a~te~~~g-s----d~~~~~~~a-~~~~~g~~l~G~k~~vs~~~~ad~~lv~a~~~~-~~~ 185 (392)
+-..+|+..+.+.++..+.+++.|... | ...+.-.++ +++++|.+|+|.|...|+++.+|.++|.....+ -.+
T Consensus 136 ~n~~~yy~~~qenDL~~~hA~~dPk~DRsk~p~e~~D~~v~VVee~~dGIVVrGAK~~aT~a~~a~ei~V~~~~~~~~~~ 215 (519)
T TIGR02310 136 DNARNWYKRIQESCLYFNHAIVNPPIDRNKPIDQVKDVYIKIEEERDDGIVVSGAKVVATNSALTHYNFIGFGSAQIIGD 215 (519)
T ss_pred HHHHHHHHHHHHhCceeecceeCCCCCCCCccccCCCCceEEEEEcCCcEEEeCHHHHhcccchhcceeeccCcccccCC
Confidence 446688999999999999999998631 1 111233344 456899999999999999999999998433221 011
Q ss_pred CCCCceEEEEEeCCCCCcccccccccc----C----CC-------CCCcEEEEEcceeeCCCCcccCCCcc----HHHHH
Q psy12318 186 KKQHGISTFIVEKGTPGFSKGKKLNKL----G----MR-------GSNTGELIFENCQVPAENLLGGENKG----AYVLM 246 (392)
Q Consensus 186 ~~~~~~~~~lV~~~~~Gv~~~~~~~~~----G----~~-------~~~s~~v~f~~v~Vp~~~~l~~~~~g----~~~~~ 246 (392)
...--..|.||.++|||++......- + .. +-.-+-|.|||||||+|+|+--.+.. +....
T Consensus 216 -d~dyAvaFavP~dtpGlk~IcR~s~~~~~~~~~~~fD~PlssrfdE~Da~vVFDdVfVPWErVF~~gd~e~~~~~~~~~ 294 (519)
T TIGR02310 216 -NDDFALMFIAPMDAEGVKLICRHSYELVAGATGSPFDYPLSSRFDENDAILVMDSVFIPWENVLIYRDFERCRTWAQYG 294 (519)
T ss_pred -CCCeEEEEEeEcCCCceEEEeCCchhhccccCCCCCcCccccccCCceEEEEeCCcccchHHceecCCHHHHHhHHHhh
Confidence 12234578999999999998553211 0 11 11124599999999999999433211 11111
Q ss_pred HhhcHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC-----C
Q psy12318 247 SGLDLERLVISAGPVGIMQACCDFAFNYVHERVQFGTRIGEFQLMQGKIADMHVALSASRAYLYSVAKACDRGS-----I 321 (392)
Q Consensus 247 ~~~~~~r~~~~a~~~G~a~~al~~~~~~~~~r~~~g~~l~~~~~v~~~la~~~~~~~~~~~~~~~~~~~~~~~~-----~ 321 (392)
.+..++....+...++.++-.+-.+..-+.. ..+.++++||.+|+++....|.++++...+........ |
T Consensus 295 ~~~~~~~~q~~~r~~~k~dfl~G~a~~~ae~-----~G~~~~~hVqekl~Eli~~~E~~~a~~~Aa~~~~~~~~~G~~~P 369 (519)
T TIGR02310 295 GFARLFPMQACTRLAVKLDFITGLLHKALQC-----TGVLEFRGVQAQMGEVVAWRNLFWTLTDAMAGSAYQWKNGAQLP 369 (519)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCcccchHHHHHHHHHHHHHHHHHHHHHHHHhcCccCCCCeEee
Confidence 1111111111112233333333322222221 23567999999999999999999999999988766532 5
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy12318 322 NSKECAGVFLVAAENAVKVALEAIQCLGG 350 (392)
Q Consensus 322 ~~~~~~~~k~~~~~~a~~~~~~~~~~~Gg 350 (392)
.......+|.+..+...++.+.+.+.+||
T Consensus 370 ~~~~~~a~r~~~~~~y~r~~eil~~~~ag 398 (519)
T TIGR02310 370 SAQALQTYRVMAPMAYHTIKKIIEQTVTS 398 (519)
T ss_pred CHHHHHHHHHHhhhhhHHHHHHHHHHccC
Confidence 66778899999999999999999866654
No 49
>PF02770 Acyl-CoA_dh_M: Acyl-CoA dehydrogenase, middle domain; InterPro: IPR006091 Acyl-CoA dehydrogenases (1.3.99.3 from EC) are a family of flavoproteins that catalyse the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with the concomitant reduction of enzyme-bound FAD. Different family members share a high sequence identity, catalytic mechanisms, and structural properties, but differ in the position of their catalytic bases and in their substrate binding specificity. Butyryl-CoA dehydrogenase [] prefers short chain substrates, medium chain- and long-chain acyl-CoA dehydrogenases prefer medium and long chain substrates, respectively, and Isovaleryl-CoA dehydrogenase [] prefers branched-chain substrates. The monomeric enzyme is folded into three domains of approximately equal size, where the N-terminal domain is all-alpha, the middle domain is an open (5,8) barrel, and the C-terminal domain is a four-helical bundle. The constituent families differ in the numbers of C-terminal domains. This entry represents the middle beta-barrel domain found in medium chain acyl-CoA dehydrogenases, as well as in the related peroxisomal acyl-CoA oxidase-II enzymes. Acyl-CoA oxidase (ACO; 1.3.3.6 from EC) catalyzes the first and rate-determining step of the peroxisomal beta-oxidation of fatty acids [].; GO: 0003995 acyl-CoA dehydrogenase activity, 0055114 oxidation-reduction process; PDB: 3MDD_B 1UDY_C 3MDE_B 2UXW_A 3B96_A 1SIQ_A 1SIR_A 2R0N_A 2R0M_A 2D29_B ....
Probab=99.59 E-value=4e-15 Score=98.76 Aligned_cols=51 Identities=49% Similarity=0.864 Sum_probs=46.8
Q ss_pred EEeecCCCCCCCcCCceeEEEEeCCeEEEeeeEeeeeCCCCCcEEEEEEEe
Q psy12318 130 CLAMSEPGSGSDVISMSLKAEKKGDMYVLNGNKFWITNGPDADIAVVYART 180 (392)
Q Consensus 130 ~~a~te~~~gsd~~~~~~~a~~~~~g~~l~G~k~~vs~~~~ad~~lv~a~~ 180 (392)
|+++|||++|+|+..+.++++++++||+|||+|.||++++.||+++|+|++
T Consensus 1 ~~a~tE~~~g~d~~~~~t~a~~~~~~~~L~G~K~~v~~~~~a~~~~v~ar~ 51 (52)
T PF02770_consen 1 AFALTEPGAGSDLAAVETTARRDGDGYVLNGEKRFVSNAPDADWFLVFART 51 (52)
T ss_dssp EEE--BTTBSSSGGG-SSEEEEETTEEEEEEEEEEEETTTTESEEEEEEEE
T ss_pred CEEEcCCCCCCCcccCEEEeecccceEEEeeEEEEECCcCccCEEEEEEEE
Confidence 689999999999999999999999999999999999999999999999997
No 50
>PF11794 HpaB_N: 4-hydroxyphenylacetate 3-hydroxylase N terminal; InterPro: IPR024674 This domain is found in the N terminus of HpaB, which encodes part of the 4-hydroxyphenylacetate 3-hydroxylase from Escherichia coli []. The enzyme is NADH-dependent and uses FAD as the redox chromophore. The domain is also found in pyoverdin chromophore biosynthetic protein (PvcC), which may play a role in one of the proposed hydroxylation steps of pyoverdine chromophore biosynthesis [] and in 4-hydroxybutyryl-CoA dehydratase (4-BUDH), a key enzyme in the metabolism of gamma-aminobutyrate [].; PDB: 3HWC_D 1U8V_D 2YYM_A 2YYI_A 2YYJ_A 2YYL_A 2YYG_A 2YYK_A.
Probab=99.03 E-value=1.5e-09 Score=96.36 Aligned_cols=122 Identities=20% Similarity=0.263 Sum_probs=78.7
Q ss_pred HHHHHhhhHHhcCCeeEEEeecCCCC--CCCc--CC--ceeEE-EEeCCeEEEeeeEeeeeCCCCCcEEEEEEEeCCCCC
Q psy12318 113 QQKEKYLPALCSGEKIGCLAMSEPGS--GSDV--IS--MSLKA-EKKGDMYVLNGNKFWITNGPDADIAVVYARTNPNAD 185 (392)
Q Consensus 113 ~~~~~~l~~~~~g~~~~~~a~te~~~--gsd~--~~--~~~~a-~~~~~g~~l~G~k~~vs~~~~ad~~lv~a~~~~~~~ 185 (392)
+-...|+..+.+.++..+.+++.|.. +..+ .. .-.++ +++++|.+|+|.|...|+++.+|.++|+....-..+
T Consensus 123 ~n~~~y~~~~~~ndL~~t~a~~dPq~DRs~~~~q~d~d~~lrVVee~~dGIvVrGAK~~~T~a~~adei~V~p~~~~~~~ 202 (264)
T PF11794_consen 123 ENIRRYYEYVQENDLFLTHAITDPQGDRSKPPHQEDPDVYLRVVEETDDGIVVRGAKMLATGAPYADEILVFPTRAMRPG 202 (264)
T ss_dssp HHHHHHHHHHHHHT--EEEEES--SSSTTSTGGSSSCCSB-EEEEE-SSEEEEEEEEEEEETGCCSSEEEE--SSSSTTC
T ss_pred HHHHHHHHHHHHhCcEeeeeeeCCCcCCCCCccccCCCceEEEEEEcCCCEEEeChhhhhcCCcccccEEEeeccCCCCC
Confidence 44567889999999999999999963 2222 11 33444 456899999999999999999999999876542221
Q ss_pred CCCCceEEEEEeCCCCCccccccccccCCC-----------C-CCcEEEEEcceeeCCCCcc
Q psy12318 186 KKQHGISTFIVEKGTPGFSKGKKLNKLGMR-----------G-SNTGELIFENCQVPAENLL 235 (392)
Q Consensus 186 ~~~~~~~~~lV~~~~~Gv~~~~~~~~~G~~-----------~-~~s~~v~f~~v~Vp~~~~l 235 (392)
...-...|.||.+.||+++.........+ - -.-+-|.|||||||+++|+
T Consensus 203 -d~dyAv~FavP~~tpGlk~i~R~s~~~~~~~~~D~PlssrfdE~Da~vvFDdVfVPWeRVF 263 (264)
T PF11794_consen 203 -DEDYAVAFAVPMNTPGLKIICRESYADGRRSPFDHPLSSRFDEMDALVVFDDVFVPWERVF 263 (264)
T ss_dssp -CGGG-EEEEEETT-TTEEEEE---TTGCCG-TTT-TTTTS----EEEEEEEEEEEEGGGEE
T ss_pred -CCceEEEEEccCCCCCEEEEeCCCCCCCccccCcCCcccccCCceEEEEECCcccchhhcc
Confidence 23344679999999999998664322222 1 1124599999999999986
No 51
>PF03241 HpaB: 4-hydroxyphenylacetate 3-hydroxylase C terminal; InterPro: IPR024719 This C-terminal domain is found in HpaB, which encodes part of the 4-hydroxyphenylacetate 3-hydroxylase from Escherichia coli []. The enzyme is NADH-dependent and uses FAD as the redox chromophore. This domain is also found in pyoverdin chromophore biosynthetic protein PvcC, which may play a role in one of the proposed hydroxylation steps of pyoverdine chromophore biosynthesis [] and in 4-hydroxybutyryl-CoA dehydratase (4-BUDH), a key enzyme in the metabolism of gamma-aminobutyrate [].; PDB: 3HWC_D 1U8V_D 2YYM_A 2YYI_A 2YYJ_A 2YYL_A 2YYG_A 2YYK_A.
Probab=96.78 E-value=0.038 Score=47.88 Aligned_cols=72 Identities=17% Similarity=0.112 Sum_probs=59.3
Q ss_pred CCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC-----CChHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccC
Q psy12318 284 RIGEFQLMQGKIADMHVALSASRAYLYSVAKACDRGS-----INSKECAGVFLVAAENAVKVALEAIQCLGGNGYIN 355 (392)
Q Consensus 284 ~l~~~~~v~~~la~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~k~~~~~~a~~~~~~~~~~~Gg~g~~~ 355 (392)
.+.++|+||++|+|++...|.+++++..+.......+ |.......+|.+..+...++++.+.+++||.-++-
T Consensus 43 G~~~~~hVqekl~Eli~~~E~~~a~~~Aae~~a~~~~~G~~~P~~~~~~a~r~~~~~~y~r~~eil~~l~gg~li~~ 119 (205)
T PF03241_consen 43 GIDKFPHVQEKLGELIAYLETLRALLIAAEAEAEPDPSGVYVPNPLPLNAARNYFPKNYPRIVEILQDLGGGGLITL 119 (205)
T ss_dssp TGTTSHHHHHHHHHHHHHHHHHHHHHHHHHHT-EE-TTSSEE--HHHHHHHHHHHHHHHHHHHHHHHHHHGGGGTC-
T ss_pred CCccchHHHHHHHHHHHHHHHHHHHHHHHHhcCccCCCCeEeECHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeC
Confidence 3577999999999999999999999999888776532 56778899999999999999999999888766653
No 52
>PTZ00457 acyl-CoA dehydrogenase; Provisional
Probab=89.12 E-value=8.1 Score=38.60 Aligned_cols=79 Identities=14% Similarity=0.056 Sum_probs=63.9
Q ss_pred cCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC-hHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCChH
Q psy12318 281 FGTRIGEFQLMQGKIADMHVALSASRAYLYSVAKACDRGSIN-SKECAGVFLVAAENAVKVALEAIQCLGGNGYINDYPT 359 (392)
Q Consensus 281 ~g~~l~~~~~v~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~k~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l 359 (392)
+|+.+.+.|.+..+|+++.+.++++-+.+-++...+..+.+. ..+..++++||.+...++-..+-++... ++..+..+
T Consensus 429 ~~~~i~~~q~~l~rlad~a~~lyam~a~~sra~~~~~~~~~~~~~e~~la~~fc~~a~~rv~~~~~~~~~~-~~~~~~~~ 507 (520)
T PTZ00457 429 SGSQVPYQQLLLNRLGEAASLLYAASAVASRASMCVSKGLPSAKVEGELASAFIAMAVSRARQLSEESCNV-GKTADDSY 507 (520)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CccchHHH
Confidence 468889999999999999999999999999988888877543 4456799999999999998888788776 55443333
Q ss_pred H
Q psy12318 360 G 360 (392)
Q Consensus 360 ~ 360 (392)
.
T Consensus 508 ~ 508 (520)
T PTZ00457 508 K 508 (520)
T ss_pred H
Confidence 3
No 53
>PF14749 Acyl-CoA_ox_N: Acyl-coenzyme A oxidase N-terminal; PDB: 2FON_A 1W07_B 1IS2_B 2DDH_A.
Probab=88.10 E-value=0.6 Score=36.90 Aligned_cols=34 Identities=24% Similarity=0.301 Sum_probs=28.1
Q ss_pred HHHhhhhhHHHHHHhcCCHHHHHHhhhHHhcCCe
Q psy12318 94 SFVAHSNLCVNQINRHATKQQKEKYLPALCSGEK 127 (392)
Q Consensus 94 ~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~ 127 (392)
.+.+|..+....|...|++||+++|+|...+.+.
T Consensus 91 p~~lH~~mFip~I~~qgt~EQ~~~Wlp~a~~~~I 124 (125)
T PF14749_consen 91 PLGLHFGMFIPTIMGQGTEEQQAKWLPKAENYEI 124 (125)
T ss_dssp THHHHHHTHHHHHHHHS-HHHHHHHHHHHHTTSS
T ss_pred hhhhHHHHHHHHHHHcCCHHHHHHHHHHHHCCcc
Confidence 3447888999999999999999999999887653
No 54
>KOG0137|consensus
Probab=79.93 E-value=50 Score=33.07 Aligned_cols=74 Identities=19% Similarity=0.179 Sum_probs=64.5
Q ss_pred cCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccC
Q psy12318 281 FGTRIGEFQLMQGKIADMHVALSASRAYLYSVAKACDRGSI-NSKECAGVFLVAAENAVKVALEAIQCLGGNGYIN 355 (392)
Q Consensus 281 ~g~~l~~~~~v~~~la~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~k~~~~~~a~~~~~~~~~~~Gg~g~~~ 355 (392)
.|+.+.+.|.+.++||+....++++.+.+-++.+....+.+ ...+.+.+.++|.+...++-..+.++.++ ...+
T Consensus 533 ~~k~iv~~q~~l~rlA~~~~~iYam~a~isRASrS~~igl~~aDhEl~~at~~C~ea~~~~~~~l~~~~~~-~~~~ 607 (634)
T KOG0137|consen 533 HGKGIVEEQSVLQRLANVAINIYAMVAVISRASRSYSIGLPNADHELALATAICSEASLRVLRWLWAASSG-HVVN 607 (634)
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhcCCcchhHHHHHHHHHHHHHHHHHHHHHHHhccc-chhh
Confidence 57889999999999999999999999999999999888754 56688899999999999999998887776 4433
No 55
>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria. The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.
Probab=45.43 E-value=44 Score=22.88 Aligned_cols=52 Identities=19% Similarity=0.333 Sum_probs=32.0
Q ss_pred CCCCHHHHHHHHHHHHHHhhc-cCchhhhhcccCC---CCchHHHHHHHHhcCCCC
Q psy12318 9 YDLTEEQNKLRETVASYCKTH-ITPIAADIDSTND---FKDLRKVWKDFGQLGLLG 60 (392)
Q Consensus 9 ~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~l~~~Gl~~ 60 (392)
-.||+.|.++++..++++.++ ..|-..++-+.=. ...++..+++|.+.|++.
T Consensus 2 ~~LT~rQ~~vL~~I~~~~~~~G~~Pt~rEIa~~~g~~S~~tv~~~L~~Le~kG~I~ 57 (65)
T PF01726_consen 2 KELTERQKEVLEFIREYIEENGYPPTVREIAEALGLKSTSTVQRHLKALERKGYIR 57 (65)
T ss_dssp ----HHHHHHHHHHHHHHHHHSS---HHHHHHHHTSSSHHHHHHHHHHHHHTTSEE
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCChHHHHHHHHHHHHCcCcc
Confidence 468999999999999998766 3444444433222 223567888888888875
No 56
>PRK09463 fadE acyl-CoA dehydrogenase; Reviewed
Probab=42.52 E-value=4.4e+02 Score=28.07 Aligned_cols=102 Identities=13% Similarity=0.083 Sum_probs=63.7
Q ss_pred cCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCChHH
Q psy12318 281 FGTRIGEFQLMQGKIADMHVALSASRAYLYSVAKACDRGSINSKECAGVFLVAAENAVKVALEAIQCLGGNGYINDYPTG 360 (392)
Q Consensus 281 ~g~~l~~~~~v~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l~ 360 (392)
.|..|...+.+..+|+|+.+.++.+-+.+-++- +++.+. .+..+++.++.+...++-+.+-++..... ...+.
T Consensus 559 ~g~~l~~~e~~~~Rl~d~~~~ly~~~a~l~r~~---~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~n~p---~~~~~ 631 (777)
T PRK09463 559 LGGSLKRRERLSARLGDILSQLYLASAVLKRYE---DEGRPE-ADLPLVHWAVQDALYQAEQALDGLLRNFP---NRVVA 631 (777)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCCCch-hHHHHHHHHHHHHHHHHHHHHHHHHHcCC---chHHH
Confidence 477888899999999999999999998776666 333322 22556666666665555554444443322 22244
Q ss_pred HHHHhh--ccCcccCChHHHHHHHHHHHHhh
Q psy12318 361 RYLRDA--KLYEIGAGTSEVRRIVIGRSINA 389 (392)
Q Consensus 361 r~~rd~--~~~~~~~g~~~~~~~~l~~~~l~ 389 (392)
..+|-+ .....+.++++.+...+++.++.
T Consensus 632 ~~~~~~~~p~g~~~~~p~d~~~~~~~~~~~~ 662 (777)
T PRK09463 632 GLLRVLVFPLGRRYRAPSDKLDHQVAKLLQT 662 (777)
T ss_pred HHHHHeeeCCCCCCCCCCHHHHHHHHHHHhC
Confidence 444433 11234456677777788877764
No 57
>PF02084 Bindin: Bindin; InterPro: IPR000775 Bindin, the major protein component of the acrosome granule of sea urchin sperm, mediates species-specific adhesion of sperm to the egg surface during fertilisation [, ]. The protein coats the acrosomal process after externalisation by the acrosome reaction; it binds to sulphated, fucose-containing polysaccharides on the vitelline-layer receptor proteoglycans that cover the egg plasma membrane. Bindins from different genera show high levels of sequence similarity in both the mature bindin domain and in the probindin precursor region. The most highly conserved region is a 42-residue segment in the central portion of the mature bindin protein. This domain may be responsible for conserved functions of bindin, while the more highly divergent flanking regions may be responsible for its species-specific properties [].; GO: 0007342 fusion of sperm to egg plasma membrane
Probab=30.75 E-value=2e+02 Score=25.10 Aligned_cols=67 Identities=21% Similarity=0.311 Sum_probs=50.6
Q ss_pred cccCCCCchHHHHHHHHh-cCCCCCCCCccCCCCCCCHHHHHHHHHHHHhcCCcchhHHHhhhhhHHHHHHhcCCHHHHH
Q psy12318 38 DSTNDFKDLRKVWKDFGQ-LGLLGITVPEEFGGSEMGYLDHVIAMEELSRSSASVGLSFVAHSNLCVNQINRHATKQQKE 116 (392)
Q Consensus 38 ~~~~~~~~~~~~~~~l~~-~Gl~~~~~p~~~GG~~~~~~~~~~~~~~la~~~~s~~~~~~~~~~~~~~~l~~~g~~~~~~ 116 (392)
+++.++.. ++++.+|. .|-.++=+|.+-. ++.++-.+++.|-.+ + .+|+..+.++.|+
T Consensus 96 EEetTISA--Kvm~~ikavLgaTKiDLPVDIN----DPYDlGLLLRhLRHH-----------S----NLLAnIgdP~Vre 154 (238)
T PF02084_consen 96 EEETTISA--KVMEDIKAVLGATKIDLPVDIN----DPYDLGLLLRHLRHH-----------S----NLLANIGDPEVRE 154 (238)
T ss_pred CCCccccH--HHHHHHHHHhcccccccccccC----ChhhHHHHHHHHHHH-----------H----HHHhhcCCHHHHH
Confidence 34566777 88888876 8888888888532 688898888888642 2 3677788999999
Q ss_pred HhhhHHhcC
Q psy12318 117 KYLPALCSG 125 (392)
Q Consensus 117 ~~l~~~~~g 125 (392)
+.|..+...
T Consensus 155 qVLsAMqEe 163 (238)
T PF02084_consen 155 QVLSAMQEE 163 (238)
T ss_pred HHHHHHhhh
Confidence 998887755
Done!