RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy12318
(392 letters)
>gnl|CDD|173845 cd01156, IVD, Isovaleryl-CoA dehydrogenase. Isovaleryl-CoA
dehydrogenase (IVD) is an is an acyl-CoA dehydrogenase,
which catalyzes the third step in leucine catabolism,
the conversion of isovaleryl-CoA (3-methylbutyryl-CoA)
into 3-methylcrotonyl-CoA. IVD is a homotetramer and has
the greatest affinity for small branched chain
substrates.
Length = 376
Score = 634 bits (1636), Expect = 0.0
Identities = 253/380 (66%), Positives = 303/380 (79%), Gaps = 4/380 (1%)
Query: 10 DLTEEQNKLRETVASYCKTHITPIAADIDSTNDFKDLRKVWKDFGQLGLLGITVPEEFGG 69
L +E LR++V + + I P+AA ID N+F R +W+ G+LGLLGIT PEE+GG
Sbjct: 1 GLDDEIEMLRQSVREFAQKEIAPLAAKIDRDNEF--PRDLWRKMGKLGLLGITAPEEYGG 58
Query: 70 SEMGYLDHVIAMEELSRSSASVGLSFVAHSNLCVNQINRHATKQQKEKYLPALCSGEKIG 129
S MGYL HVI MEE+SR+S SV LS+ AHSNLC+NQI R+ + QKEKYLP L SGE IG
Sbjct: 59 SGMGYLAHVIIMEEISRASGSVALSYGAHSNLCINQIYRNGSAAQKEKYLPKLISGEHIG 118
Query: 130 CLAMSEPGSGSDVISMSLKAEKKGDMYVLNGNKFWITNGPDADIAVVYARTNPNADKKQH 189
LAMSEP +GSDV+SM L+AEKKGD YVLNG+K WITNGPDAD VVYA+T+P H
Sbjct: 119 ALAMSEPNAGSDVVSMKLRAEKKGDRYVLNGSKMWITNGPDADTLVVYAKTDP--SAGAH 176
Query: 190 GISTFIVEKGTPGFSKGKKLNKLGMRGSNTGELIFENCQVPAENLLGGENKGAYVLMSGL 249
GI+ FIVEKG PGFS+ +KL+KLGMRGSNT EL+FE+C+VP EN+LGGENKG YVLMSGL
Sbjct: 177 GITAFIVEKGMPGFSRAQKLDKLGMRGSNTCELVFEDCEVPEENILGGENKGVYVLMSGL 236
Query: 250 DLERLVISAGPVGIMQACCDFAFNYVHERVQFGTRIGEFQLMQGKIADMHVALSASRAYL 309
D ERLV++ GP+GIMQA D A Y H+R QFG IGEFQL+QGK+ADM+ L+ASR+YL
Sbjct: 237 DYERLVLAGGPIGIMQAALDVAIPYAHQRKQFGQPIGEFQLVQGKLADMYTRLNASRSYL 296
Query: 310 YSVAKACDRGSINSKECAGVFLVAAENAVKVALEAIQCLGGNGYINDYPTGRYLRDAKLY 369
Y+VAKACDRG+++ K+ AGV L AAE A +VAL+AIQ LGGNGYINDYPTGR LRDAKLY
Sbjct: 297 YTVAKACDRGNMDPKDAAGVILYAAEKATQVALDAIQILGGNGYINDYPTGRLLRDAKLY 356
Query: 370 EIGAGTSEVRRIVIGRSINA 389
EIGAGTSE+RR+VIGR +
Sbjct: 357 EIGAGTSEIRRMVIGRELFK 376
>gnl|CDD|215284 PLN02519, PLN02519, isovaleryl-CoA dehydrogenase.
Length = 404
Score = 554 bits (1428), Expect = 0.0
Identities = 234/380 (61%), Positives = 287/380 (75%), Gaps = 2/380 (0%)
Query: 11 LTEEQNKLRETVASYCKTHITPIAADIDSTNDFKDLRKVWKDFGQLGLLGITVPEEFGGS 70
+ Q + +E+V + + +I P AA ID+TN F +WK G L GIT PEE+GG
Sbjct: 26 FDDTQLQFKESVQQFAQENIAPHAAAIDATNSFPKDVNLWKLMGDFNLHGITAPEEYGGL 85
Query: 71 EMGYLDHVIAMEELSRSSASVGLSFVAHSNLCVNQINRHATKQQKEKYLPALCSGEKIGC 130
+GYL H IAMEE+SR+S SVGLS+ AHSNLC+NQ+ R+ T QKEKYLP L SGE +G
Sbjct: 86 GLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRNGTPAQKEKYLPKLISGEHVGA 145
Query: 131 LAMSEPGSGSDVISMSLKAEKKGDMYVLNGNKFWITNGPDADIAVVYARTNPNADKKQHG 190
LAMSEP SGSDV+SM KAE+ YVLNGNK W TNGP A VVYA+T+ A G
Sbjct: 146 LAMSEPNSGSDVVSMKCKAERVDGGYVLNGNKMWCTNGPVAQTLVVYAKTDVAAGS--KG 203
Query: 191 ISTFIVEKGTPGFSKGKKLNKLGMRGSNTGELIFENCQVPAENLLGGENKGAYVLMSGLD 250
I+ FI+EKG PGFS +KL+KLGMRGS+T EL+FENC VP EN+LG E KG YV+MSGLD
Sbjct: 204 ITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPEENVLGQEGKGVYVMMSGLD 263
Query: 251 LERLVISAGPVGIMQACCDFAFNYVHERVQFGTRIGEFQLMQGKIADMHVALSASRAYLY 310
LERLV++AGP+G+MQAC D YV +R QFG IGEFQ +QGK+ADM+ +L +SR+Y+Y
Sbjct: 264 LERLVLAAGPLGLMQACLDVVLPYVRQREQFGRPIGEFQFIQGKLADMYTSLQSSRSYVY 323
Query: 311 SVAKACDRGSINSKECAGVFLVAAENAVKVALEAIQCLGGNGYINDYPTGRYLRDAKLYE 370
SVA+ CD G ++ K+CAGV L AAE A +VAL+AIQCLGGNGYIN+YPTGR LRDAKLYE
Sbjct: 324 SVARDCDNGKVDRKDCAGVILCAAERATQVALQAIQCLGGNGYINEYPTGRLLRDAKLYE 383
Query: 371 IGAGTSEVRRIVIGRSINAE 390
IGAGTSE+RR++IGR + E
Sbjct: 384 IGAGTSEIRRMLIGRELFKE 403
>gnl|CDD|173847 cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and
eukaryotic short/branched chain acyl-CoA dehydrogenases.
Short chain acyl-CoA dehydrogenase (SCAD). SCAD is a
mitochondrial beta-oxidation enzyme. It catalyzes the
alpha,beta dehydrogenation of the corresponding
trans-enoyl-CoA by FAD, which becomes reduced. The
reduced form of SCAD is reoxidized in the oxidative
half-reaction by electron-transferring flavoprotein
(ETF), from which the electrons are transferred to the
mitochondrial respiratory chain coupled with ATP
synthesis. This subgroup also contains the eukaryotic
short/branched chain acyl-CoA dehydrogenase(SBCAD), the
bacterial butyryl-CoA dehydorgenase(BCAD) and
2-methylbutyryl-CoA dehydrogenase, which is involved in
isoleucine catabolism. These enzymes are homotetramers.
Length = 373
Score = 417 bits (1075), Expect = e-145
Identities = 177/375 (47%), Positives = 247/375 (65%), Gaps = 4/375 (1%)
Query: 13 EEQNKLRETVASYCKTHITPIAADIDSTNDFKDLRKVWKDFGQLGLLGITVPEEFGGSEM 72
EE +R+TV + + I P+AA++D +F R+V K+ +LGL+GI +PEE+GG+ +
Sbjct: 1 EEHQMIRKTVRDFAEKEIAPLAAEMDEKGEFP--REVIKEMAELGLMGIPIPEEYGGAGL 58
Query: 73 GYLDHVIAMEELSRSSASVGLSFVAHSNLCVNQINRHATKQQKEKYLPALCSGEKIGCLA 132
+L + IA+EEL++ ASV + H++L N I + T++QK+KYLP L +GEKIG A
Sbjct: 59 DFLAYAIAIEELAKVDASVAVIVSVHNSLGANPIIKFGTEEQKKKYLPPLATGEKIGAFA 118
Query: 133 MSEPGSGSDVISMSLKAEKKGDMYVLNGNKFWITNGPDADIAVVYARTNPNADKKQHGIS 192
+SEPG+GSD ++ A+K GD YVLNG+K WITNG +AD +V+A T+P K GI+
Sbjct: 119 LSEPGAGSDAAALKTTAKKDGDDYVLNGSKMWITNGGEADFYIVFAVTDP--SKGYRGIT 176
Query: 193 TFIVEKGTPGFSKGKKLNKLGMRGSNTGELIFENCQVPAENLLGGENKGAYVLMSGLDLE 252
FIVE+ TPG S GKK +KLG+RGS+T ELIFE+ +VP EN+LG E +G + M LD
Sbjct: 177 AFIVERDTPGLSVGKKEDKLGIRGSSTTELIFEDVRVPKENILGEEGEGFKIAMQTLDGG 236
Query: 253 RLVISAGPVGIMQACCDFAFNYVHERVQFGTRIGEFQLMQGKIADMHVALSASRAYLYSV 312
R+ I+A +GI QA D A +Y ER QFG I +FQ +Q K+ADM + A+R Y
Sbjct: 237 RIGIAAQALGIAQAALDAAVDYAKERKQFGKPIADFQGIQFKLADMATEIEAARLLTYKA 296
Query: 313 AKACDRGSINSKECAGVFLVAAENAVKVALEAIQCLGGNGYINDYPTGRYLRDAKLYEIG 372
A+ D G KE A L A+E A++V +A+Q GG GY DYP RY RDAK+ EI
Sbjct: 297 ARLKDNGEPFIKEAAMAKLFASEVAMRVTTDAVQIFGGYGYTKDYPVERYYRDAKITEIY 356
Query: 373 AGTSEVRRIVIGRSI 387
GTSE++R+VI + +
Sbjct: 357 EGTSEIQRLVIAKHL 371
>gnl|CDD|224871 COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism].
Length = 393
Score = 399 bits (1028), Expect = e-138
Identities = 168/389 (43%), Positives = 233/389 (59%), Gaps = 7/389 (1%)
Query: 10 DLTEEQNKLRETVASYCKTHITPIAADIDSTNDFKDL-RKVWKDFGQLGLLGITVPEEFG 68
DL+EEQ LR V + + + P AA+ID + + R++ + + GLLG+T+PEE+G
Sbjct: 4 DLSEEQEALRAEVREFAEEELAPEAAEIDRRIEDERFPRELLRALAEAGLLGLTIPEEYG 63
Query: 69 GSEMGYLDHVIAMEELSRSSASVGLSF-VAHSNLCVN--QINRHATKQQKEKYLPALCSG 125
G + L+ +EEL+R+ A L+ + H L I R T++QK +YLP L SG
Sbjct: 64 GLGLSPLEQAAVLEELARADAGGALALGLTHGGLGALAPTILRFGTEEQKRRYLPRLASG 123
Query: 126 EKIGCLAMSEPGSGSDVISM-SLKAEKKGDMYVLNGNKFWITNGPDADIAVVYARTNPNA 184
E IG A++EPG+GSD+ S+ + A + YVLNG K WI+N P AD +V ART+P A
Sbjct: 124 ELIGAFALTEPGAGSDLASLRTTAAVRDDGDYVLNGQKIWISNAPVADWLLVLARTDP-A 182
Query: 185 DKKQHGISTFIVEKG-TPGFSKGKKLNKLGMRGSNTGELIFENCQVPAENLLGGENKGAY 243
K GIS F+V K TPG S G L K+G+RGS TGE+ F++ +VPAENLLG E G
Sbjct: 183 PGKHKGISLFLVPKDLTPGVSVGPILKKMGLRGSATGEVFFDDVRVPAENLLGEEGDGFK 242
Query: 244 VLMSGLDLERLVISAGPVGIMQACCDFAFNYVHERVQFGTRIGEFQLMQGKIADMHVALS 303
+ M L++ERL I+A +GI +A + A Y ER QFG I +FQL+Q K+ADM L
Sbjct: 243 IAMETLNVERLGIAAQALGIAEAALEEAVAYARERKQFGRPIADFQLVQFKLADMAAELE 302
Query: 304 ASRAYLYSVAKACDRGSINSKECAGVFLVAAENAVKVALEAIQCLGGNGYINDYPTGRYL 363
A+R + A+ D G E A L A E A++VA EA+Q GG GY +YP RY
Sbjct: 303 AARLLVLRAAELADAGDDAGAEAAMAKLFATEAALEVADEAVQVHGGYGYTEEYPVERYY 362
Query: 364 RDAKLYEIGAGTSEVRRIVIGRSINAEYK 392
RDA++ I GTSE++R++I R +
Sbjct: 363 RDARILRIYEGTSEIQRLIIARRLLGLPA 391
>gnl|CDD|173838 cd00567, ACAD, Acyl-CoA dehydrogenase. Both mitochondrial acyl-CoA
dehydrogenases (ACAD) and peroxisomal acyl-CoA oxidases
(AXO) catalyze the alpha,beta dehydrogenation of the
corresponding trans-enoyl-CoA by FAD, which becomes
reduced. The reduced form of ACAD is reoxidized in the
oxidative half-reaction by electron-transferring
flavoprotein (ETF), from which the electrons are
transferred to the mitochondrial respiratory chain
coupled with ATP synthesis. In contrast, AXO catalyzes
a different oxidative half-reaction, in which the
reduced FAD is reoxidized by molecular oxygen. The ACAD
family includes the eukaryotic beta-oxidation enzymes,
short (SCAD), medium (MCAD), long (LCAD) and very-long
(VLCAD) chain acyl-CoA dehydrogenases. These enzymes all
share high sequence similarity, but differ in their
substrate specificities. The ACAD family also includes
amino acid catabolism enzymes such as Isovaleryl-CoA
dehydrogenase (IVD), short/branched chain acyl-CoA
dehydrogenases(SBCAD), Isobutyryl-CoA dehydrogenase
(IBDH), glutaryl-CoA deydrogenase (GCD) and
Crotonobetainyl-CoA dehydrogenase. The mitochondrial
ACAD's are generally homotetramers, except for VLCAD,
which is a homodimer. Related enzymes include the SOS
adaptive reponse proten aidB, Naphthocyclinone
hydroxylase (NcnH), and and Dibenzothiophene (DBT)
desulfurization enzyme C (DszC).
Length = 327
Score = 350 bits (900), Expect = e-120
Identities = 140/374 (37%), Positives = 197/374 (52%), Gaps = 48/374 (12%)
Query: 13 EEQNKLRETVASYCKTHITPIAADIDSTNDFKDLRKVWKDFGQLGLLGITVPEEFGGSEM 72
EEQ +LR++ + + P A + T + W+ +LGLL
Sbjct: 1 EEQRELRDSAREFAAEELEPYARERRETP-----EEPWELLAELGLLL------------ 43
Query: 73 GYLDHVIAMEELSRSSASVGLSFVAHSNLCVNQINRHATKQQKEKYLPALCSGEKIGCLA 132
+ + T++QKE+YLP L SGE I A
Sbjct: 44 -----------------------------GAALLLAYGTEEQKERYLPPLASGEAIAAFA 74
Query: 133 MSEPGSGSDVISMSLKAEKKGDMYVLNGNKFWITNGPDADIAVVYARTNPNADKKQHGIS 192
++EPG+GSD+ + A K GD YVLNG K +I+NG DAD+ +V ART+ GIS
Sbjct: 75 LTEPGAGSDLAGIRTTARKDGDGYVLNGRKIFISNGGDADLFIVLARTDEEGPGH-RGIS 133
Query: 193 TFIVEKGTPGFSKGKKLNKLGMRGSNTGELIFENCQVPAENLLGGENKGAYVLMSGLDLE 252
F+V TPG + G+ +K+GMRGS TGEL+F++ +VP +NLLG E G + M GL++
Sbjct: 134 AFLVPADTPGVTVGRIWDKMGMRGSGTGELVFDDVRVPEDNLLGEEGGGFELAMKGLNVG 193
Query: 253 RLVISAGPVGIMQACCDFAFNYVHERVQFGTRIGEFQLMQGKIADMHVALSASRAYLYSV 312
RL+++A +G +A D A Y +R QFG + EFQ +Q K+ADM L A+R LY
Sbjct: 194 RLLLAAVALGAARAALDEAVEYAKQRKQFGKPLAEFQAVQFKLADMAAELEAARLLLYRA 253
Query: 313 AKACDRGSIN-SKECAGVFLVAAENAVKVALEAIQCLGGNGYINDYPTGRYLRDAKLYEI 371
A D+G E A L A E A +VA A+Q GG GY +YP RYLRDA+ I
Sbjct: 254 AWLLDQGPDEARLEAAMAKLFATEAAREVADLAMQIHGGRGYSREYPVERYLRDARAARI 313
Query: 372 GAGTSEVRRIVIGR 385
GT+E++R++I R
Sbjct: 314 AEGTAEIQRLIIAR 327
>gnl|CDD|173849 cd01160, LCAD, Long chain acyl-CoA dehydrogenase. LCAD is an
acyl-CoA dehydrogenases (ACAD), which is found in the
mitochondria of eukaryotes and in some prokaryotes. It
catalyzes the alpha, beta dehydrogenation of the
corresponding trans-enoyl-CoA by FAD, which becomes
reduced. The reduced form of LCAD is reoxidized in the
oxidative half-reaction by electron-transferring
flavoprotein (ETF), from which the electrons are
transferred to the mitochondrial respiratory chain
coupled with ATP synthesis. LCAD acts as a homodimer.
Length = 372
Score = 314 bits (805), Expect = e-105
Identities = 148/375 (39%), Positives = 226/375 (60%), Gaps = 4/375 (1%)
Query: 13 EEQNKLRETVASYCKTHITPIAADIDSTNDFKDLRKVWKDFGQLGLLGITVPEEFGGSEM 72
EE + R+ V + + P + + + R+VW+ G+ GLLG+ PEE+GG
Sbjct: 1 EEHDAFRDVVRRFFAKEVAPFHHEWEKAGEVP--REVWRKAGEQGLLGVGFPEEYGGIGG 58
Query: 73 GYLDHVIAMEELSRSSASVGLSFVAHSNLCVNQINRHATKQQKEKYLPALCSGEKIGCLA 132
L + EEL+R+ S G H+++ I R + +QKE+ LP + +G+KIG +A
Sbjct: 59 DLLSAAVLWEELARAGGS-GPGLSLHTDIVSPYITRAGSPEQKERVLPQMVAGKKIGAIA 117
Query: 133 MSEPGSGSDVISMSLKAEKKGDMYVLNGNKFWITNGPDADIAVVYARTNPNADKKQHGIS 192
M+EPG+GSD+ + A K GD YVLNG+K +ITNG AD+ +V ART A + GIS
Sbjct: 118 MTEPGAGSDLQGIRTTARKDGDHYVLNGSKTFITNGMLADVVIVVARTGGEA-RGAGGIS 176
Query: 193 TFIVEKGTPGFSKGKKLNKLGMRGSNTGELIFENCQVPAENLLGGENKGAYVLMSGLDLE 252
F+VE+GTPGFS+G+KL K+G + +T EL F++C+VPAENLLG ENKG Y LM L E
Sbjct: 177 LFLVERGTPGFSRGRKLKKMGWKAQDTAELFFDDCRVPAENLLGEENKGFYYLMQNLPQE 236
Query: 253 RLVISAGPVGIMQACCDFAFNYVHERVQFGTRIGEFQLMQGKIADMHVALSASRAYLYSV 312
RL+I+AG + + + NYV +R FG + + Q+++ KIA++ ++ +RA+L +
Sbjct: 237 RLLIAAGALAAAEFMLEETRNYVKQRKAFGKTLAQLQVVRHKIAELATKVAVTRAFLDNC 296
Query: 313 AKACDRGSINSKECAGVFLVAAENAVKVALEAIQCLGGNGYINDYPTGRYLRDAKLYEIG 372
A ++G ++ E + A E +VA E +Q GG GY+ +YP R RDA++ I
Sbjct: 297 AWRHEQGRLDVAEASMAKYWATELQNRVAYECVQLHGGWGYMREYPIARAYRDARVQPIY 356
Query: 373 AGTSEVRRIVIGRSI 387
GT+E+ + +I R +
Sbjct: 357 GGTTEIMKELISRQM 371
>gnl|CDD|173851 cd01162, IBD, Isobutyryl-CoA dehydrogenase. Isobutyryl-CoA
dehydrogenase (IBD) catalyzes the alpha, beta-
dehydrogenation of short branched chain acyl-CoA
intermediates in valine catabolism. It is predicted to
be a homotetramer.
Length = 375
Score = 296 bits (760), Expect = 4e-98
Identities = 151/383 (39%), Positives = 221/383 (57%), Gaps = 11/383 (2%)
Query: 11 LTEEQNKLRETVASYCKTHITPIAADIDSTNDF--KDLRKVWKDFGQLGLLGITVPEEFG 68
L EEQ ++E ++ + P AAD D F LRK +LG GI + ++ G
Sbjct: 1 LNEEQRAIQEVARAFAAKEMAPHAADWDQKKHFPVDVLRKA----AELGFGGIYIRDDVG 56
Query: 69 GSEMGYLDHVIAMEELSRSSASVGLSFVAHSNLCVNQINRHATKQQKEKYLPALCSGEKI 128
GS + LD I E LS S ++++ N+C I+ +Q+E++LP LC+ EK+
Sbjct: 57 GSGLSRLDASIIFEALSTGCVSTA-AYISIHNMCAWMIDSFGNDEQRERFLPDLCTMEKL 115
Query: 129 GCLAMSEPGSGSDVISMSLKAEKKGDMYVLNGNKFWITNGPDADIAVVYARTNPNADKKQ 188
++EPGSGSD ++ +A ++GD YVLNG+K +I+ D+D+ VV ART K
Sbjct: 116 ASYCLTEPGSGSDAAALRTRAVREGDHYVLNGSKAFISGAGDSDVYVVMARTGGEGPK-- 173
Query: 189 HGISTFIVEKGTPGFSKGKKLNKLGMRGSNTGELIFENCQVPAENLLGGENKGAYVLMSG 248
GIS F+VEKGTPG S G K+G T +IFE+C+VP EN LGGE +G + M+G
Sbjct: 174 -GISCFVVEKGTPGLSFGANEKKMGWNAQPTRAVIFEDCRVPVENRLGGEGQGFGIAMAG 232
Query: 249 LDLERLVISAGPVGIMQACCDFAFNYVHERVQFGTRIGEFQLMQGKIADMHVALSASRAY 308
L+ RL I++ +G QA D A Y+ ER QFG + +FQ +Q K+ADM L ASR
Sbjct: 233 LNGGRLNIASCSLGAAQAALDLARAYLEERKQFGKPLADFQALQFKLADMATELVASRLM 292
Query: 309 LYSVAKACDRGSINS-KECAGVFLVAAENAVKVALEAIQCLGGNGYINDYPTGRYLRDAK 367
+ A A DRG ++ K CA A + VA +A+Q GG GY+ DYP +Y+RD +
Sbjct: 293 VRRAASALDRGDPDAVKLCAMAKRFATDECFDVANQALQLHGGYGYLKDYPVEQYVRDLR 352
Query: 368 LYEIGAGTSEVRRIVIGRSINAE 390
+++I GT+E+ R++I R++
Sbjct: 353 VHQILEGTNEIMRLIIARALLTR 375
>gnl|CDD|185640 PTZ00461, PTZ00461, isovaleryl-CoA dehydrogenase; Provisional.
Length = 410
Score = 293 bits (751), Expect = 2e-96
Identities = 152/371 (40%), Positives = 215/371 (57%), Gaps = 10/371 (2%)
Query: 8 IYDLTEEQNKLRETVASYCKTHITPIAADIDSTNDFKDLRKVWKDFGQLGLLGITVPEEF 67
+Y+ T E LRETVA + + + A + D F R ++K G LG++G+TVPE
Sbjct: 34 LYNPTPEHAALRETVAKFSREVVDKHAREDDINMHFN--RDLFKQLGDLGVMGVTVPEAD 91
Query: 68 GGSEMGYLDHVIAMEELSRSSASVGLSFVAHSNLCVNQINRHATKQQKEKYLPALCSGEK 127
GG+ M + VI ELS+ L+++AHS L VN A+ Q+ ++LP + +GE
Sbjct: 92 GGAGMDAVAAVIIHHELSKYDPGFCLAYLAHSMLFVNNFYYSASPAQRARWLPKVLTGEH 151
Query: 128 IGCLAMSEPGSGSDVISMSLKAEKKGD-MYVLNGNKFWITNGPDADIAVVYARTNPNADK 186
+G + MSEPG+G+DV+ M A+K + YVLNG+K WITNG AD+ ++YA+ +
Sbjct: 152 VGAMGMSEPGAGTDVLGMRTTAKKDSNGNYVLNGSKIWITNGTVADVFLIYAKVDGK--- 208
Query: 187 KQHGISTFIVEKGTPGFSKGKKLNKLGMRGSNTGELIFENCQVPAENLLGGENKGAYVLM 246
I+ F+VE+GT GF++G K++K GMR S+ +L FE+ VPAENLLG E KG +M
Sbjct: 209 ----ITAFVVERGTKGFTQGPKIDKCGMRASHMCQLFFEDVVVPAENLLGEEGKGMVGMM 264
Query: 247 SGLDLERLVISAGPVGIMQACCDFAFNYVHERVQFGTRIGEFQLMQGKIADMHVALSASR 306
L+LER+ ++A VGI + + +Y ER FG I F +Q IA+ + A++
Sbjct: 265 RNLELERVTLAAMAVGIAERSVELMTSYASERKAFGKPISNFGQIQRYIAEGYADTEAAK 324
Query: 307 AYLYSVAKACDRGSINSKECAGVFLVAAENAVKVALEAIQCLGGNGYINDYPTGRYLRDA 366
A +YSV+ G+ N L A A KVA AIQ +GG GY D P R RDA
Sbjct: 325 ALVYSVSHNVHPGNKNRLGSDAAKLFATPIAKKVADSAIQVMGGMGYSRDMPVERLWRDA 384
Query: 367 KLYEIGAGTSE 377
KL EIG GT E
Sbjct: 385 KLLEIGGGTIE 395
>gnl|CDD|173850 cd01161, VLCAD, Very long chain acyl-CoA dehydrogenase. VLCAD is
an acyl-CoA dehydrogenase (ACAD), which is found in the
mitochondria of eukaryotes and in some bacteria. It
catalyzes the alpha,beta dehydrogenation of the
corresponding trans-enoyl-CoA by FAD, which becomes
reduced. The reduced form of ACAD is reoxidized in the
oxidative half-reaction by electron-transferring
flavoprotein (ETF), from which the electrons are
transferred to the mitochondrial respiratory chain
coupled with ATP synthesis. VLCAD acts as a homodimer.
Length = 409
Score = 277 bits (710), Expect = 3e-90
Identities = 139/385 (36%), Positives = 199/385 (51%), Gaps = 13/385 (3%)
Query: 10 DLTEEQNKLRETVASYCKTHITPIAADIDSTNDFKDLRKVWKDFGQLGLLGITVPEEFGG 69
+ TEE N L V + + P A D RK +LGL G+ VPEE+GG
Sbjct: 26 EQTEELNMLVGPVEKFFEEVNDP--AKNDQLEKIP--RKTLTQLKELGLFGLQVPEEYGG 81
Query: 70 SEMGYLDHVIAMEELSRSSASVGLSFVAHSNLCVNQINRHATKQQKEKYLPALCSGEKIG 129
+ + E + ++ AH ++ I T+ QKEKYLP L SGE I
Sbjct: 82 LGLNNTQYARLAEIVGMD-LGFSVTLGAHQSIGFKGILLFGTEAQKEKYLPKLASGEWIA 140
Query: 130 CLAMSEPGSGSDVISMSLKAEKK--GDMYVLNGNKFWITNGPDADIAVVYART---NPNA 184
A++EP SGSD S+ A G YVLNG+K WITNG ADI V+A+T +
Sbjct: 141 AFALTEPSSGSDAASIRTTAVLSEDGKHYVLNGSKIWITNGGIADIFTVFAKTEVKDATG 200
Query: 185 DKKQHGISTFIVEKGTPGFSKGKKLNKLGMRGSNTGELIFENCQVPAENLLGGENKGAYV 244
K I+ FIVE+ G + G K+G++GSNT E+ FE+ ++P EN+LG G V
Sbjct: 201 SVKDK-ITAFIVERSFGGVTNGPPEKKMGIKGSNTAEVYFEDVKIPVENVLGEVGDGFKV 259
Query: 245 LMSGLDLERLVISAGPVGIMQACCDFAFNYVHERVQFGTRIGEFQLMQGKIADMHVALSA 304
M+ L+ R + A +G M+ C + A +Y + R QFG +I EF L+Q K+A+M + A
Sbjct: 260 AMNILNNGRFGMGAALIGTMKRCIEKAVDYANNRKQFGKKIHEFGLIQEKLANMAILQYA 319
Query: 305 SRAYLYSVAKACDRGSIN--SKECAGVFLVAAENAVKVALEAIQCLGGNGYINDYPTGRY 362
+ + Y + DRG E A + A+E A V EAIQ GG G++ +Y R
Sbjct: 320 TESMAYMTSGNMDRGLKAEYQIEAAISKVFASEAAWLVVDEAIQIHGGMGFMREYGVERV 379
Query: 363 LRDAKLYEIGAGTSEVRRIVIGRSI 387
LRD +++ I GT+E+ R+ I +
Sbjct: 380 LRDLRIFRIFEGTNEILRLFIALTG 404
>gnl|CDD|173846 cd01157, MCAD, Medium chain acyl-CoA dehydrogenase. MCADs are
mitochondrial beta-oxidation enzymes, which catalyze the
alpha,beta dehydrogenation of the corresponding medium
chain acyl-CoA by FAD, which becomes reduced. The
reduced form of MCAD is reoxidized in the oxidative
half-reaction by electron-transferring flavoprotein
(ETF), from which the electrons are transferred to the
mitochondrial respiratory chain coupled with ATP
synthesis. MCAD is a homotetramer.
Length = 378
Score = 257 bits (659), Expect = 5e-83
Identities = 133/378 (35%), Positives = 207/378 (54%), Gaps = 8/378 (2%)
Query: 11 LTEEQNKLRETVASYCKTHITPIAADIDSTNDF--KDLRKVWKDFGQLGLLGITVPEEFG 68
LTE+Q + +ET + + I P+AA+ D + ++ +++ W +LGL+ +PE+ G
Sbjct: 1 LTEQQKEFQETARKFAREEIIPVAAEYDKSGEYPWPLIKRAW----ELGLMNTHIPEDCG 56
Query: 69 GSEMGYLDHVIAMEELSRSSASVGLSFVAHSNLCVNQINRHATKQQKEKYLPALCSGEKI 128
G +G D + EEL+ V + A+S L + +QK+KYL + +
Sbjct: 57 GLGLGTFDTCLITEELAYGCTGVQTAIEANS-LGQMPVIISGNDEQKKKYLGRMTEEPLM 115
Query: 129 GCLAMSEPGSGSDVISMSLKAEKKGDMYVLNGNKFWITNGPDADIAVVYARTNPNAD-KK 187
++EPG+GSDV + KAEKKGD Y++NG K WITNG A+ + AR++P+
Sbjct: 116 CAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKANWYFLLARSDPDPKCPA 175
Query: 188 QHGISTFIVEKGTPGFSKGKKLNKLGMRGSNTGELIFENCQVPAENLLGGENKGAYVLMS 247
+ FIVE TPG G+K +G R S+T + FE+ +VP EN+L GE G + M
Sbjct: 176 SKAFTGFIVEADTPGIQPGRKELNMGQRCSDTRGITFEDVRVPKENVLIGEGAGFKIAMG 235
Query: 248 GLDLERLVISAGPVGIMQACCDFAFNYVHERVQFGTRIGEFQLMQGKIADMHVALSASRA 307
D R ++AG VG+ Q D A Y ER FG I E Q + +ADM + + +R
Sbjct: 236 AFDKTRPPVAAGAVGLAQRALDEATKYALERKTFGKLIAEHQAVSFMLADMAMKVELARL 295
Query: 308 YLYSVAKACDRGSINSKECAGVFLVAAENAVKVALEAIQCLGGNGYINDYPTGRYLRDAK 367
A D G N+ + AA+ A ++A +A+Q GGNG+ ++YP + +RDAK
Sbjct: 296 AYQRAAWEVDSGRRNTYYASIAKAFAADIANQLATDAVQIFGGNGFNSEYPVEKLMRDAK 355
Query: 368 LYEIGAGTSEVRRIVIGR 385
+Y+I GTS+++R++I R
Sbjct: 356 IYQIYEGTSQIQRLIISR 373
>gnl|CDD|173840 cd01151, GCD, Glutaryl-CoA dehydrogenase. Glutaryl-CoA
dehydrogenase (GCD). GCD is an acyl-CoA dehydrogenase,
which catalyzes the oxidative decarboxylation of
glutaryl-CoA to crotonyl-CoA and carbon dioxide in the
catabolism of lysine, hydroxylysine, and tryptophan. It
uses electron transfer flavoprotein (ETF) as an electron
acceptor. GCD is a homotetramer. GCD deficiency leads to
a severe neurological disorder in humans.
Length = 386
Score = 258 bits (660), Expect = 7e-83
Identities = 128/383 (33%), Positives = 200/383 (52%), Gaps = 21/383 (5%)
Query: 11 LTEEQNKLRETVASYCKTHITPIAADIDSTNDFKDLRKVWKDFGQLGLLGITVPEEFGGS 70
LTEE+ +R+T +C+ + P + F RK+ ++ G+LGLLG T + +G +
Sbjct: 13 LTEEERAIRDTAREFCQEELAPRVLEAYREEKFD--RKIIEEMGELGLLGAT-IKGYGCA 69
Query: 71 EMGYLDHVIAMEELSRSSASVGLSFVAHSNLCVNQINRHATKQQKEKYLPALCSGEKIGC 130
+ + + + E+ R + S+L + I +++QK+KYLP L SGE IGC
Sbjct: 70 GLSSVAYGLIAREVERVDSGYRSFMSVQSSLVMLPIYDFGSEEQKQKYLPKLASGELIGC 129
Query: 131 LAMSEPGSGSDVISMSLKAEKKGDMYVLNGNKFWITNGPDADIAVVYARTNPNADKKQHG 190
++EP GSD M +A K G Y LNG+K WITN P AD+ VV+AR + +
Sbjct: 130 FGLTEPNHGSDPGGMETRARKDGGGYKLNGSKTWITNSPIADVFVVWAR-----NDETGK 184
Query: 191 ISTFIVEKGTPGFSKGKKLNKLGMRGSNTGELIFENCQVPAENLLGGENKGAYVLMSGLD 250
I FI+E+G G S K K +R S TGE++ +N VP ENLL G G L+
Sbjct: 185 IRGFILERGMKGLSAPKIQGKFSLRASITGEIVMDNVFVPEENLLPGAE-GLRGPFKCLN 243
Query: 251 LERLVISAGPVGIMQACCDFAFNYVHERVQFGTRIGEFQLMQGKIADMHVALSASRAYLY 310
R I+ G +G + C A YV +R QFG + FQL+Q K+ADM ++
Sbjct: 244 NARYGIAWGALGAAEDCYHTARQYVLDRKQFGRPLAAFQLVQKKLADMLTEIALGLLACL 303
Query: 311 SVAKACDRGSINSKECAGVFLVAAEN---AVKVALEAIQCLGGNGYINDYPTGRYLRDAK 367
V + D+G ++ + L+ N A+++A A + LGGNG ++Y R++ + +
Sbjct: 304 RVGRLKDQGKATPEQ---ISLLKRNNCGKALEIARTAREMLGGNGISDEYHIIRHMVNLE 360
Query: 368 ---LYEIGAGTSEVRRIVIGRSI 387
YE GT ++ +++GR+I
Sbjct: 361 SVNTYE---GTHDIHALILGRAI 380
>gnl|CDD|183454 PRK12341, PRK12341, putative acyl-CoA dehydrogenase; Provisional.
Length = 381
Score = 206 bits (526), Expect = 4e-63
Identities = 113/401 (28%), Positives = 187/401 (46%), Gaps = 43/401 (10%)
Query: 11 LTEEQN----KLRETVASYC---------KTHITPIAADIDSTNDFKDLRKVWKDFGQ-- 55
LTEEQ +RE + + P R+ +
Sbjct: 5 LTEEQELLLASIRELITRNFPEEYFRTCDENGTYP--------------REFMRALADNG 50
Query: 56 LGLLGITVPEEFGGSEMGYLDHVIAMEELSRSSASVGLSFVAHSNLCVNQINRHATKQQK 115
+ +LG VPEEFGG+ Y+ ++ +EE+S+ A F+ + C++ + R + +Q
Sbjct: 51 ISMLG--VPEEFGGTPADYVTQMLVLEEVSKCGAPA---FLITNGQCIHSMRRFGSAEQL 105
Query: 116 EK-YLPALCSGEKIGCLAMSEPGSGSDVISMSLKAEKKGDMYVLNGNKFWITNGPDADIA 174
K L +G+ LA++EPG+GSD S + +K LNG K +IT +
Sbjct: 106 RKTAESTLETGDPAYALALTEPGAGSDNNSATTTYTRKNGKVYLNGQKTFITGAKEYPYM 165
Query: 175 VVYARTNPNADKKQHGISTFIVEKGTPGFSKGKKLNKLGMRGSNTGELIFENCQVPAENL 234
+V AR +P + + + V+ PG K L+K+G +T E+ +N +V +L
Sbjct: 166 LVLAR-DPQPKDPKKAFTLWWVDSSKPGI-KINPLHKIGWHMLSTCEVYLDNVEVEESDL 223
Query: 235 LGGENKGAYVLMSGLDLERLVISAGPVGIMQACCDFAFNYVHERVQFGTRIGEFQLMQGK 294
+G E G +M ++ERL+ +A +G + + A Y ++R+QFG IG QL+Q K
Sbjct: 224 VGEEGMGFLNVMYNFEMERLINAARSLGFAECAFEDAARYANQRIQFGKPIGHNQLIQEK 283
Query: 295 IADMHVALSASRAYLYSVAKACDRG---SINSKECAGVFLVAAENAVKVALEAIQCLGGN 351
+ M + + R +Y VA D G ++ L A A++V +AIQ +GG
Sbjct: 284 LTLMAIKIENMRNMVYKVAWQADNGQSLRTSAALAK---LYCARTAMEVIDDAIQIMGGL 340
Query: 352 GYINDYPTGRYLRDAKLYEIGAGTSEVRRIVIGRSINAEYK 392
GY ++ R+ RD + IG GT E+ + GR I +Y+
Sbjct: 341 GYTDEARVSRFWRDVRCERIGGGTDEIMIYIAGRQILKDYQ 381
>gnl|CDD|132251 TIGR03207, cyc_hxne_CoA_dh, cyclohexanecarboxyl-CoA dehydrogenase.
Cyclohex-1-ene-1carboxyl-CoA is an intermediate in the
anaerobic degradation of benzoyl-CoA derived from
varioius aromatic compounds, in Rhodopseudomonas
palustris but not Thauera aromatica. The aliphatic
compound cyclohexanecarboxylate, can be converted to the
same intermediate in two steps. The first step is its
ligation to coenzyme A. The second is the action of this
enzyme, cyclohexanecarboxyl-CoA dehydrogenase.
Length = 372
Score = 196 bits (499), Expect = 4e-59
Identities = 122/380 (32%), Positives = 194/380 (51%), Gaps = 16/380 (4%)
Query: 11 LTEEQNKLRETVASYCKTHITPIAADIDSTNDFKDLRKVWKDFGQLGLLGITVPEEFGGS 70
L E+ L +T + + I P + D T R++ +D G++G +G +PEE GG
Sbjct: 1 LNEDLQALADTARRFARERIAPGFKERDKTRVLD--RELMRDMGEMGFIGPELPEEHGGL 58
Query: 71 EMGYLDHVIAMEELSRSSASVGLSFV-AHSNLCVNQINRHATKQQKEKYLPALCSGEKIG 129
MG L + E+++R+ S+ S+V ++L + +HA + + +L L +GE +
Sbjct: 59 GMGCLAAGVIHEQIARADLSM--SYVNLLASLNGQILAQHARPEIAKPWLGQLIAGEALF 116
Query: 130 CLAMSEPGSGSDVISMSLKAEKKGDMYVLNGNKFWITNGPDADIAVVYARTNPNADKKQH 189
+A++EP GSD + L+AE+ GD YVLNG K I+ AD AVV+ART A+
Sbjct: 117 AIALTEPRGGSDAARLRLRAERDGDDYVLNGEKTSISAADQADAAVVFARTGSEAEGA-R 175
Query: 190 GISTFIVEKGTPGFSKGKKLNKLGMRGSNTGELIFENCQVPAENLLGGENKGAYVLMSGL 249
GIS F+V PG ++ + + G R G + FEN +VPA+++LG E +G +M G
Sbjct: 176 GISAFLVPMDLPGITR-NRFDCHGQRAIGRGSIFFENVRVPADHMLGNEGQGFVQVMQGF 234
Query: 250 DLERLVISAGPVGIMQACCDFAFNYVHERVQFGTRIGEFQLMQGKIADMHVALSASRAYL 309
D R +I + + +A D + YV ER FG + FQ + +AD + A+R
Sbjct: 235 DFSRALIGLQVLAVARAALDETWRYVAERQAFGKPLSAFQGVSHPLADAETQVEAARLLC 294
Query: 310 YSVAKACDRGSINSKECAGVFLVAAENAVKVALEAI-QCL---GGNGYINDYPTGRYLRD 365
D G ++ E A + A K+A + I QCL G GY + LRD
Sbjct: 295 LQTLWLKDHGLPHTSEAA----MCKWWAPKLAYDVIHQCLLTHGHGGYDRG-DMEQRLRD 349
Query: 366 AKLYEIGAGTSEVRRIVIGR 385
++IG GT+++ + +I R
Sbjct: 350 VLGFQIGDGTAQIMKTIIAR 369
>gnl|CDD|173841 cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar
to fadE6, fadE17, and fadE26. Putative acyl-CoA
dehydrogenases (ACAD). Mitochondrial acyl-CoA
dehydrogenases (ACAD) catalyze the alpha, beta
dehydrogenation of the corresponding trans-enoyl-CoA by
FAD, which becomes reduced. The reduced form of ACAD is
reoxidized in the oxidative half-reaction by
electron-transferring flavoprotein (ETF), from which the
electrons are transferred to the mitochondrial
respiratory chain coupled with ATP synthesis. The ACD
family includes the eukaryotic beta-oxidation, as well
as amino acid catabolism enzymes. These enzymes share
high sequence similarity, but differ in their substrate
specificities. The mitochondrial ACD's are generally
homotetramers and have an active site glutamate at a
conserved position.
Length = 380
Score = 181 bits (461), Expect = 2e-53
Identities = 96/386 (24%), Positives = 172/386 (44%), Gaps = 19/386 (4%)
Query: 13 EEQNKLRETVASYCKTHITP---IAADIDSTNDFKDLRKVWKDFGQLGLLGITVPEEFGG 69
+ R V ++ H+ P + + +D R+ + G P+E+GG
Sbjct: 1 PSEEAFRAEVRAWLAAHLPPELREESALGYREGREDRRRWQRALAAAGWAAPGWPKEYGG 60
Query: 70 SEMGYLDHVIAMEELSRSSASVGLSFVAHSNLCVNQINRHATKQQKEKYLPALCSGEKIG 129
++ +I EE++ + A V + + +L I + T +QK ++LP + SGE+I
Sbjct: 61 RGASLMEQLIFREEMAAAGAPVPFNQIG-IDLAGPTILAYGTDEQKRRFLPPILSGEEIW 119
Query: 130 CLAMSEPGSGSDVISMSLKAEKKGDMYVLNGNKFWITNGPDADIAVVYARTNPNADKKQH 189
C SEPG+GSD+ + +A + GD +V+NG K W + AD A + RT+P A K
Sbjct: 120 CQGFSEPGAGSDLAGLRTRAVRDGDDWVVNGQKIWTSGAHYADWAWLLVRTDPEA-PKHR 178
Query: 190 GISTFIVEKGTPGFSKGKKLNKLGMRGSNTGELIFENCQVPAENLLGGENKGAYVLMSGL 249
GIS +V+ +PG + + + + G E+ ++ +VP N +G N G V M+ L
Sbjct: 179 GISILLVDMDSPGVTV-RPIRSI-NGGEFFNEVFLDDVRVPDANRVGEVNDGWKVAMTTL 236
Query: 250 DLERLVISAGPVGIMQACCDFAFNYVHERVQFGTRIGEFQLMQGKIADMHVALSASRAYL 309
+ ER+ I + + G + + L++ ++A + A R +
Sbjct: 237 NFERVSIGGSAA---TFFEL-LLARLLLLTRDGRPLIDDPLVRQRLARLEAEAEALRLLV 292
Query: 310 YSVAKACDRGSINSKECAGVFLVAAENAVKVALEAIQCLGGNGYINDYPTG--------R 361
+ +A A G E + L +E A ++A A++ LG + D G
Sbjct: 293 FRLASALAAGKPPGAEASIAKLFGSELAQELAELALELLGTAALLRDPAPGAELAGRWEA 352
Query: 362 YLRDAKLYEIGAGTSEVRRIVIGRSI 387
++ I GTSE++R +I +
Sbjct: 353 DYLRSRATTIYGGTSEIQRNIIAERL 378
>gnl|CDD|179566 PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated.
Length = 380
Score = 175 bits (445), Expect = 3e-51
Identities = 103/345 (29%), Positives = 175/345 (50%), Gaps = 11/345 (3%)
Query: 51 KDFGQLGLLGITVPEEFGGSEMGYLDHVIAMEELSRSSASVGLSFVAHS-NLCVNQINRH 109
K +G+ + +PEE GG + G++ EL R A ++V + N R
Sbjct: 44 KALADMGIDSLLIPEEHGGLDAGFVTLAAVWMELGRLGAP---TYVLYQLPGGFNTFLRE 100
Query: 110 ATKQQKEKYLPALCSGEKIGCLAMSEPGSGSDVISMSLKAEKKGDMYVLNGNKFWITNGP 169
T++Q +K + +G+++ A++EPG+GSDV S+ ++ LNG+K +IT+
Sbjct: 101 GTQEQIDKIMAFRGTGKQMWNSAITEPGAGSDVGSLKTTYTRRNGKVYLNGSKCFITSSA 160
Query: 170 DADIAVVYARTNPNADKKQHGISTFIVEKGTPGFSKGKKLNKLGMRGSNTGELIFENCQV 229
VV AR + DK + + + V+ PG K L KLG+R + E+ F++ ++
Sbjct: 161 YTPYIVVMARDGASPDKPVY--TEWFVDMSKPGIKVTK-LEKLGLRMDSCCEITFDDVEL 217
Query: 230 PAENLLGGENKGAYVLMSGLDLERLVISAGPVGIMQACCDF--AFNYVHERVQFGTRIGE 287
+++ G E G + D ER +++ G A C F A Y ++RVQFG IG
Sbjct: 218 DEKDMFGREGNGFNRVKEEFDHERFLVALTNYG--TAMCAFEDAARYANQRVQFGEAIGR 275
Query: 288 FQLMQGKIADMHVALSASRAYLYSVAKACDRGSINSKECAGVFLVAAENAVKVALEAIQC 347
FQL+Q K A M + L++ + LY A D G+I S + A A A +V A+Q
Sbjct: 276 FQLIQEKFAHMAIKLNSMKNMLYEAAWKADNGTITSGDAAMCKYFCANAAFEVVDSAMQV 335
Query: 348 LGGNGYINDYPTGRYLRDAKLYEIGAGTSEVRRIVIGRSINAEYK 392
LGG G ++ R+ RD ++ + G+ E++ + +GR++ +Y+
Sbjct: 336 LGGVGIAGNHRISRFWRDLRVDRVSGGSDEMQILTLGRAVLKQYR 380
>gnl|CDD|201229 pfam00441, Acyl-CoA_dh_1, Acyl-CoA dehydrogenase, C-terminal
domain. C-terminal domain of Acyl-CoA dehydrogenase is
an all-alpha, four helical up-and-down bundle.
Length = 150
Score = 166 bits (422), Expect = 2e-50
Identities = 61/149 (40%), Positives = 88/149 (59%)
Query: 239 NKGAYVLMSGLDLERLVISAGPVGIMQACCDFAFNYVHERVQFGTRIGEFQLMQGKIADM 298
+G V M L+ ERL+I+A +G+ + D A Y +R FG + +FQL++ K+ADM
Sbjct: 1 GRGFAVAMETLNHERLLIAAAALGLARRALDEAIEYARQRKAFGRPLIDFQLIRHKLADM 60
Query: 299 HVALSASRAYLYSVAKACDRGSINSKECAGVFLVAAENAVKVALEAIQCLGGNGYINDYP 358
L A+R +Y A+A D G + E A L A+E A +VA A+Q LGG GY +YP
Sbjct: 61 AAELEAARLLVYRAAEALDAGGPDPAEAAMAKLYASELAQEVADLAMQLLGGYGYSREYP 120
Query: 359 TGRYLRDAKLYEIGAGTSEVRRIVIGRSI 387
R RDA++ IG GTSE++R +I R +
Sbjct: 121 LERLYRDARVLRIGEGTSEIQRNIIARRL 149
>gnl|CDD|178141 PLN02526, PLN02526, acyl-coenzyme A oxidase.
Length = 412
Score = 172 bits (437), Expect = 1e-49
Identities = 113/386 (29%), Positives = 182/386 (47%), Gaps = 12/386 (3%)
Query: 2 YKIDDTIYDLTEEQNKLRETVASYCKTHITPIAADIDSTNDFKDLRKVWKDFGQLGLLGI 61
Y+ DD LT E+ LR+ V + + PI + +F + G LG+ G
Sbjct: 23 YQFDDL---LTPEEQALRKRVRECMEKEVAPIMTEYWEKAEFP--FHIIPKLGSLGIAGG 77
Query: 62 TVPEEFGGSEMGYLDHVIAMEELSRSSASVGLSFVAHSNLCVNQINRHATKQQKEKYLPA 121
T+ + +G + IA E++R AS + HS+L + I ++ QK+KYLP+
Sbjct: 78 TI-KGYGCPGLSITASAIATAEVARVDASCSTFILVHSSLAMLTIALCGSEAQKQKYLPS 136
Query: 122 LCSGEKIGCLAMSEPGSGSDVISMSLKAEKKGDMYVLNGNKFWITNGPDADIAVVYARTN 181
L + + C A++EP GSD S++ A K ++LNG K WI N AD+ V++AR
Sbjct: 137 LAQLDTVACWALTEPDYGSDASSLNTTATKVEGGWILNGQKRWIGNSTFADVLVIFAR-- 194
Query: 182 PNADKKQHGISTFIVEKGTPGFSKGKKLNKLGMRGSNTGELIFENCQVPAENLLGGENKG 241
N Q I+ FIV+KG PG K NK+G+R G+++ ++ VP E+ L G N
Sbjct: 195 -NTTTNQ--INGFIVKKGAPGLKATKIENKIGLRMVQNGDIVLKDVFVPDEDRLPGVNSF 251
Query: 242 AYVLMSGLDLERLVISAGPVGIMQACCDFAFNYVHERVQFGTRIGEFQLMQGKIADMHVA 301
L + R++++ P+GI D Y+ ER QFG + FQ+ Q K+ M
Sbjct: 252 QDTNKV-LAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQEKLVRMLGN 310
Query: 302 LSASRAYLYSVAKACDRGSINSKECAGVFLVAAENAVKVALEAIQCLGGNGYINDYPTGR 361
+ A + + K + G + + + A + + LGGNG + D+ +
Sbjct: 311 IQAMFLVGWRLCKLYESGKMTPGHASLGKAWITKKARETVALGRELLGGNGILADFLVAK 370
Query: 362 YLRDAKLYEIGAGTSEVRRIVIGRSI 387
D + GT ++ +V GR I
Sbjct: 371 AFCDLEPIYTYEGTYDINALVTGREI 396
>gnl|CDD|217220 pfam02771, Acyl-CoA_dh_N, Acyl-CoA dehydrogenase, N-terminal
domain. The N-terminal domain of Acyl-CoA dehydrogenase
is an all-alpha domain.
Length = 113
Score = 150 bits (382), Expect = 6e-45
Identities = 55/115 (47%), Positives = 79/115 (68%), Gaps = 2/115 (1%)
Query: 12 TEEQNKLRETVASYCKTHITPIAADIDSTNDFKDLRKVWKDFGQLGLLGITVPEEFGGSE 71
TEEQ LR+TV + + + P AA+ D +F R++W+ G+LGLLG+T+PEE+GG+
Sbjct: 1 TEEQEALRDTVREFAEEEVAPHAAEWDEEGEFP--RELWRKLGELGLLGLTIPEEYGGAG 58
Query: 72 MGYLDHVIAMEELSRSSASVGLSFVAHSNLCVNQINRHATKQQKEKYLPALCSGE 126
+ YL++ + EEL+R+ ASVGL+ HS+L I R T++QKEKYLP L SGE
Sbjct: 59 LDYLEYALVAEELARADASVGLALSVHSSLVAPPILRFGTEEQKEKYLPKLASGE 113
>gnl|CDD|173842 cd01153, ACAD_fadE5, Putative acyl-CoA dehydrogenases similar to
fadE5. Putative acyl-CoA dehydrogenase (ACAD).
Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze
the alpha,beta dehydrogenation of the corresponding
trans-enoyl-CoA by FAD, which becomes reduced. The
reduced form of ACAD is reoxidized in the oxidative
half-reaction by electron-transferring flavoprotein
(ETF), from which the electrons are transferred to the
mitochondrial respiratory chain coupled with ATP
synthesis. The ACD family includes the eukaryotic
beta-oxidation, as well as amino acid catabolism
enzymes. These enzymes share high sequence similarity,
but differ in their substrate specificities. The
mitochondrial ACD's are generally homotetramers and have
an active site glutamate at a conserved position.
Length = 407
Score = 152 bits (385), Expect = 4e-42
Identities = 111/412 (26%), Positives = 180/412 (43%), Gaps = 52/412 (12%)
Query: 20 ETVASYCKTHITPIAADIDSTN-DFKDLR--------KVWKDFGQLGLLGITVPEEFGGS 70
E VA + + P+ AD D F D R + F + G + + VPEE+GG
Sbjct: 3 EEVARLAENVLAPLNADGDREGPVFDDGRVVVPPPFKEALDAFAEAGWMALGVPEEYGGQ 62
Query: 71 EMGYLDHVIAMEELSRSSASVGLSFVAHSNLCVNQINRHATKQQKEKYLPALCSGEKIGC 130
+ + E SR A + + + H T+ Q+EK++P L GE G
Sbjct: 63 GLPITVYSALAEIFSRGDAPLMYASGTQG--AAATLLAHGTEAQREKWIPRLAEGEWTGT 120
Query: 131 LAMSEPGSGSDVISMSLKAEKKGD-MYVLNGNKFWITNG----PDADIAVVYART-NPNA 184
+ ++EP +GSD+ ++ KA + D + +NG K +I+ G + + +V AR+
Sbjct: 121 MCLTEPDAGSDLGALRTKAVYQADGSWRINGVKRFISAGEHDMSENIVHLVLARSEGAPP 180
Query: 185 DKKQHGISTFIVEK----GTP-GFSKGKKLNKLGMRGSNTGELIFENCQVPAENLLGGEN 239
K G+S F+V K G G + + K+G+ GS T EL+F+N + L+G E
Sbjct: 181 GVK--GLSLFLVPKFLDDGERNGVTVARIEEKMGLHGSPTCELVFDNAKGE---LIGEEG 235
Query: 240 KGAYVLMSGLDLERLVISAGPVGIMQACCDFAFNYVHERVQFGTRIGEF-QLMQGKIADM 298
G + + ++ RL + G+ +A A Y ER Q G I + D+
Sbjct: 236 MGLAQMFAMMNGARLGVGTQGTGLAEAAYLNALAYAKERKQGGDLIKAAPAVTIIHHPDV 295
Query: 299 HVALSASRAY--------LYSVAKACD--RGSINSKECAGVFL------------VAAEN 336
+L +AY LY+ A D E +E
Sbjct: 296 RRSLMTQKAYAEGSRALDLYT-ATVQDLAERKATEGEDRKALSALADLLTPVVKGFGSEA 354
Query: 337 AVKVALEAIQCLGGNGYINDYPTGRYLRDAKLYEIGAGTSEVRRI-VIGRSI 387
A++ +AIQ GG+GY +YP +Y RDA++ I GT+ ++ + +IGR I
Sbjct: 355 ALEAVSDAIQVHGGSGYTREYPIEQYYRDARITTIYEGTTGIQALDLIGRKI 406
>gnl|CDD|173843 cd01154, AidB, Proteins involved in DNA damage response, similar to
the AidB gene product. AidB is one of several genes
involved in the SOS adaptive response to DNA alkylation
damage, whose expression is activated by the Ada
protein. Its function has not been entirely elucidated;
however, it is similar in sequence and function to
acyl-CoA dehydrogenases. It has been proposed that aidB
directly destroys DNA alkylating agents such as
nitrosoguanidines (nitrosated amides) or their reaction
intermediates.
Length = 418
Score = 148 bits (376), Expect = 9e-41
Identities = 92/282 (32%), Positives = 140/282 (49%), Gaps = 24/282 (8%)
Query: 115 KEKYLPALCSGEKIGCLA---MSEPGSGSDVISMSLKAEK-KGDMYVLNGNKFWITNGPD 170
K+ L K G L M+E GSD+ + AE+ G +Y LNG+K W + P
Sbjct: 132 KQYLPGLLSDRYKTGLLGGTWMTEKQGGSDLGANETTAERSGGGVYRLNGHK-WFASAPL 190
Query: 171 ADIAVVYARTNPNADKKQHGISTFIV----EKGT-PGFSKGKKLNKLGMRGSNTGELIFE 225
AD A+V AR A G+S F+V E GT G+ + +KLG R TGE+ F+
Sbjct: 191 ADAALVLARP-EGAPAGARGLSLFLVPRLLEDGTRNGYRIRRLKDKLGTRSVATGEVEFD 249
Query: 226 NCQVPAEN-LLGGENKGAYVLMSGLDLERLVISAGPVGIMQACCDFAFNYVHERVQFGTR 284
+ AE L+G E KG Y ++ L++ RL + +GIM+ A++Y R FG
Sbjct: 250 D----AEAYLIGDEGKGIYYILEMLNISRLDNAVAALGIMRRALSEAYHYARHRRAFGKP 305
Query: 285 IGEFQLMQGKIADMHVALSASRAYLYSVAKACDR-GSINSKECAGVFL-------VAAEN 336
+ + LM+ +A+M V + A+ A + A+A DR + E L +A +
Sbjct: 306 LIDHPLMRRDLAEMEVDVEAATALTFRAARAFDRAAADKPVEAHMARLATPVAKLIACKR 365
Query: 337 AVKVALEAIQCLGGNGYINDYPTGRYLRDAKLYEIGAGTSEV 378
A V EA++ GGNGY+ ++P R R+A++ I GT +
Sbjct: 366 AAPVTSEAMEVFGGNGYLEEWPVARLHREAQVTPIWEGTGNI 407
>gnl|CDD|132247 TIGR03203, pimD_small, pimeloyl-CoA dehydrogenase, small subunit.
Members of this protein family are the PimD proteins of
species such as Rhodopseudomonas palustris,
Bradyrhizobium japonicum. The pimFABCDE operon encodes
proteins for the metabolism of straight chain
dicarboxylates of seven to fourteen carbons. Especially
relevant is pimeloyl-CoA, basis of the gene symbol, as
it is a catabolite of benzoyl-CoA degradation, which
occurs in Rhodopseudomonas palustris.
Length = 378
Score = 144 bits (364), Expect = 2e-39
Identities = 108/378 (28%), Positives = 169/378 (44%), Gaps = 22/378 (5%)
Query: 9 YDLTEEQNKLRETVASYCKTHITPIAADIDSTNDFKD-----LRKVWKDFGQLGLLGITV 63
+DL+EEQ L+E+V KT + D DS ++ + VW + GLLG+
Sbjct: 2 FDLSEEQRLLKESVEGLLKT-----SYDFDSRKKYQKEKGGWSKAVWGKLAEQGLLGLPF 56
Query: 64 PEEFGGSEMGYLDHVIAMEELSRSSASVGLSFVAHSNLCVNQINRHATKQQKEKYLPALC 123
E GG G ++ +I ME L + A V ++A + + + QK +LP +
Sbjct: 57 SEADGGFGAGSVETMIVMEALGK--ALVLEPYLATVVIGGGFLRHAGSAAQKAAHLPGII 114
Query: 124 SGEKIGCLAMSEPGSGSDVISMSLKAEKKGDMYVLNGNKFWITNGPDADIAVVYARTNPN 183
G K A E S D+ +S A+K GD +V++G KF + NG AD +V ART
Sbjct: 115 DGSKTFAFAQLEKNSRYDLGDVSTTAKKTGDGWVIDGEKFVVLNGETADTLIVTARTK-G 173
Query: 184 ADKKQHGISTFIVEKGTPGFSKGKKLNKLGMRGSNTGELIFENCQVPAENLLGGENKGAY 243
A + + GI F+V G G + + G+ + ++ F V A+ +G
Sbjct: 174 ARRDRTGIGVFLVPAGAKGVTIKGYPTQDGLHAA---DITFTGVVVGADAAIGDPENALP 230
Query: 244 VLMSGLDLERLVISAGPVGIMQACCDFAFNYVHERVQFGTRIGEFQLMQGKIADMHVALS 303
++ +D R + A VG+M Y+ R QFG IG FQ++Q + ADM VA+
Sbjct: 231 LIERVVDDARAALCAEAVGLMDESLKTTVEYIKTRKQFGVPIGSFQVLQHRAADMFVAVE 290
Query: 304 ASRAYLYSVAKACDRGSINSKECAGVFLVAAENAVK----VALEAIQCLGGNGYINDYPT 359
+R+ A D ++KE A A K V ++IQ GG G +
Sbjct: 291 QARSMAMFATMASDFD--DAKERANAIAAAKVQIGKSLKFVGQQSIQLHGGIGMTMEAKI 348
Query: 360 GRYLRDAKLYEIGAGTSE 377
G Y + + E G ++
Sbjct: 349 GHYFKRLTMIEHTFGDTD 366
>gnl|CDD|173844 cd01155, ACAD_FadE2, Acyl-CoA dehydrogenases similar to fadE2.
FadE2-like Acyl-CoA dehydrogenase (ACAD). Acyl-CoA
dehydrogenases (ACAD) catalyze the alpha,beta
dehydrogenation of the corresponding trans-enoyl-CoA by
FAD, which becomes reduced. The reduced form of ACAD is
reoxidized in the oxidative half-reaction by
electron-transferring flavoprotein (ETF), from which the
electrons are transferred to the mitochondrial
respiratory chain coupled with ATP synthesis. The ACAD
family includes the eukaryotic beta-oxidation, as well
as amino acid catabolism enzymes. These enzymes share
high sequence similarity, but differ in their substrate
specificities. ACAD's are generally homotetramers and
have an active site glutamate at a conserved position.
Length = 394
Score = 127 bits (321), Expect = 4e-33
Identities = 101/397 (25%), Positives = 168/397 (42%), Gaps = 39/397 (9%)
Query: 17 KLRETVASYCKTHITPIAADID---STND---------FKDLRKVWKDFGQLGLLGITVP 64
+LR V ++ + H+ P + + + L+ K GL + +P
Sbjct: 5 ELRARVKAFMEEHVYPAEQEFLEYYAEGGDRWWTPPPIIEKLKAKAKA---EGLWNLFLP 61
Query: 65 EEFGGSEMGYLDHVIAMEELSRS---SASVGLSFVAHSNLCVNQINRHATKQQKEKYLPA 121
E G S + L++ EE RS N+ V ++R+ +++QK+++L
Sbjct: 62 EVSGLSGLTNLEYAYLAEETGRSFFAPEVFNCQAPDTGNMEV--LHRYGSEEQKKQWLEP 119
Query: 122 LCSGEKIGCLAMSEPG-SGSDVISMSLKAEKKGDMYVLNGNKFWITNG--PDADIAVVYA 178
L G+ AM+EP + SD ++ E+ GD YV+NG K+W + P IA+V
Sbjct: 120 LLDGKIRSAFAMTEPDVASSDATNIECSIERDGDDYVINGRKWWSSGAGDPRCKIAIVMG 179
Query: 179 RTNPNADK--KQHGISTFIVEKGTPGFSKGKKLNKLGMRGSNTG--ELIFENCQVPAENL 234
RT+P+ +Q S +V TPG + + L+ G + G E+ F+N +VPA NL
Sbjct: 180 RTDPDGAPRHRQQ--SMILVPMDTPGVTIIRPLSVFGYDDAPHGHAEITFDNVRVPASNL 237
Query: 235 LGGENKGAYVLMSGLDLERLVISAGPVG----IMQACCDFAFNYVHERVQFGTRIGEFQL 290
+ GE +G + L R+ +G ++ C A + R FG ++ + +
Sbjct: 238 ILGEGRGFEIAQGRLGPGRIHHCMRLIGAAERALELMCQRAVS----REAFGKKLAQHGV 293
Query: 291 MQGKIADMHVALSASRAYLYSVAKACDRG--SINSKECAGVFLVAAENAVKVALEAIQCL 348
+ IA + + +R + A D KE A + + A A+K+ AIQ
Sbjct: 294 VAHWIAKSRIEIEQARLLVLKAAHMIDTVGNKAARKEIAMIKVAAPRMALKIIDRAIQVH 353
Query: 349 GGNGYINDYPTGRYLRDAKLYEIGAGTSEVRRIVIGR 385
G G D P A+ I G EV I R
Sbjct: 354 GAAGVSQDTPLANMYAWARTLRIADGPDEVHLRSIAR 390
>gnl|CDD|132248 TIGR03204, pimC_large, pimeloyl-CoA dehydrogenase, large subunit.
Members of this protein family are the PimC proteins of
species such as Rhodopseudomonas palustris and
Bradyrhizobium japonicum. The pimFABCDE operon encodes
proteins for the metabolism of straight chain
dicarboxylates of seven to fourteen carbons. Especially
relevant is pimeloyl-CoA, basis of the gene symbol, as
it is a catabolite of benzoyl-CoA degradation, which
occurs in Rhodopseudomonas palustris.
Length = 395
Score = 116 bits (292), Expect = 3e-29
Identities = 75/234 (32%), Positives = 120/234 (51%), Gaps = 8/234 (3%)
Query: 11 LTEEQNKLRETVASYCKTHITPIAAD--IDSTNDFKD-LRKVWKDFGQLGLLGITVPEEF 67
++E+ R+ V S+ K ++ ++ + KD + W+ + G P+++
Sbjct: 4 FSKEEQAFRDEVRSFFKDNVPADTRQKLVEGRHLTKDEMVTWWRILNKKGWGVSHWPKQY 63
Query: 68 GGSEMGYLDHVIAMEELSRSSASVGLSFVAHSNLCVNQINRHATKQQKEKYLPALCSGEK 127
GG+ + H I EEL + A L+F ++ I ++QK+++LP + + +
Sbjct: 64 GGTGWTSVQHYIFNEELQSAPAPQPLAFGV--SMVGPVIYTFGNEEQKKRFLPRIANVDD 121
Query: 128 IGCLAMSEPGSGSDVISMSLKAEKKGDMYVLNGNKFWITNGPDADIAVVYARTNPNADKK 187
C SEPGSGSD+ S+ KAEKKGD +++NG K W T AD RT+P A KK
Sbjct: 122 WWCQGFSEPGSGSDLASLKTKAEKKGDKWIINGQKTWTTLAQHADWIFCLCRTDPTA-KK 180
Query: 188 QHGISTFIVEKGTPGFSKGKKLNKLGMRGSNTGELIFENCQVPAENLLGGENKG 241
Q GIS +V+ + G + G G E+ F++ +VP ENL+G ENKG
Sbjct: 181 QMGISFILVDMKSKGITVRPIQTIDG--GVEVNEVFFDDVEVPYENLVGEENKG 232
>gnl|CDD|185635 PTZ00456, PTZ00456, acyl-CoA dehydrogenase; Provisional.
Length = 622
Score = 99.6 bits (248), Expect = 1e-22
Identities = 98/392 (25%), Positives = 158/392 (40%), Gaps = 86/392 (21%)
Query: 57 GLLGITVPEEFGGSEMGYLDHVIAMEELSRSSASVGLSFVAHSNLCV---NQINRHATKQ 113
G GI+ PEE+GG + I E + A+ F + L + N + +++
Sbjct: 112 GWTGISEPEEYGGQALPLSVGFITRELM----ATANWGFSMYPGLSIGAANTLMAWGSEE 167
Query: 114 QKEKYLPALCSGEKIGCLAMSEPGSGSDVISMSLKAEKKGD-MYVLNGNKFWITNGPDAD 172
QKE+YL L SGE G + ++EP G+D+ + KAE D Y + G K +I+ G D D
Sbjct: 168 QKEQYLTKLVSGEWSGTMCLTEPQCGTDLGQVKTKAEPSADGSYKITGTKIFISAG-DHD 226
Query: 173 -----IAVVYARTNPNADKKQHGISTFIVEKGTP---GFSKGKK-------LNKLGMRGS 217
+ +V AR PN+ G+S F+V + G + K K+G++GS
Sbjct: 227 LTENIVHIVLARL-PNSLPTTKGLSLFLVPRHVVKPDGSLETAKNVKCIGLEKKMGIKGS 285
Query: 218 NTGELIFENCQVPAENLLGGENKGAYVLMSGLDLERLVISAGPVGIMQACCDFAFNYVHE 277
+T +L FEN L+G N G + + ++ R+ + V + A Y E
Sbjct: 286 STCQLSFEN---SVGYLIGEPNAGMKQMFTFMNTARVGTALEGVCHAELAFQNALRYARE 342
Query: 278 R----------------------------VQFGTRIGE----FQLMQGKIADMHV----- 300
R + F + E L G++ D+H
Sbjct: 343 RRSMRALSGTKEPEKPADRIICHANVRQNILFAKAVAEGGRALLLDVGRLLDIHAAAKDA 402
Query: 301 ----ALSASRAYLYSVAKACDRGSINSKECAGVFLVAAENAVKVALEAIQCLGGNGYIND 356
AL + +AK C E V+ A +Q GG+GYI
Sbjct: 403 ATREALDHEIGFYTPIAKGC----------------LTEWGVEAASRCLQVWGGHGYIKG 446
Query: 357 YPTGRYLRDAKLYEIGAGTSEVRRI-VIGRSI 387
+ LRDA++ + GT+ ++ + IGR +
Sbjct: 447 NGMEQILRDARIGTLYEGTTGIQALDFIGRKV 478
>gnl|CDD|237277 PRK13026, PRK13026, acyl-CoA dehydrogenase; Reviewed.
Length = 774
Score = 97.3 bits (243), Expect = 6e-22
Identities = 88/345 (25%), Positives = 153/345 (44%), Gaps = 47/345 (13%)
Query: 12 TEEQNKLRETVASYCKTHITPIAADIDSTNDFKDL-RKVWKDFGQLGLLGITVPEEFGGS 70
EEQ + V + + D D + KDL +VW + G + +P+E+GG
Sbjct: 80 AEEQAFIDNEVETLLT-----MLDDWDIVQNRKDLPPEVWDYLKKEGFFALIIPKEYGGK 134
Query: 71 EMG-YLDHVIAMEELSRSSASVGLSFVAHS----NLCVNQINRHATKQQKEKYLPALCSG 125
Y + I + +RS ++ V +S L + + T++QK+ +LP L G
Sbjct: 135 GFSAYANSTIVSKIATRSVSAAVTVMVPNSLGPGEL----LTHYGTQEQKDYWLPRLADG 190
Query: 126 EKIGCLAMSEPGSGSDVISMS-----LKAEKKGDMYV---LNGNKFWITNGPDAD-IAVV 176
+I C A++ P +GSD ++ + E +G+ + L +K +IT P A + +
Sbjct: 191 TEIPCFALTGPEAGSDAGAIPDTGIVCRGEFEGEEVLGLRLTWDKRYITLAPVATVLGLA 250
Query: 177 YARTNPNA---DKKQHGISTFIVEKGTPGFSKGKKLNKLGMR---GSNTGELIFENCQVP 230
+ +P+ DKK+ GI+ ++ PG G++ N LGM G+ G+ +F +P
Sbjct: 251 FKLRDPDGLLGDKKELGITCALIPTDHPGVEIGRRHNPLGMAFMNGTTRGKDVF----IP 306
Query: 231 AENLLGGEN---KGAYVLMSGLDLER---LVISAGPVGIMQACCDFAFNYVHERVQFGTR 284
+ ++GG + +G +L+ L R L G M A+ YV R QFG
Sbjct: 307 LDWIIGGPDYAGRGWRMLVECLSAGRGISLPALGTASGHMATRTTGAYAYV--RRQFGMP 364
Query: 285 IGEFQLMQGKIADMHVALSASRAYLYSVAKACDRGSINSKECAGV 329
IG+F+ +Q +A + A YL A+ ++ V
Sbjct: 365 IGQFEGVQEALARI-----AGNTYLLEAARRLTTTGLDLGVKPSV 404
>gnl|CDD|215473 PLN02876, PLN02876, acyl-CoA dehydrogenase.
Length = 822
Score = 96.4 bits (240), Expect = 1e-21
Identities = 88/285 (30%), Positives = 131/285 (45%), Gaps = 22/285 (7%)
Query: 108 RHATKQQKEKYLPALCSGEKIGCLAMSEPG-SGSDVISMSLKAEKKGDMYVLNGNKFWIT 166
R+ K+Q+ ++L L G+ AM+EP + SD ++ ++GD YV+NG K+W T
Sbjct: 531 RYGNKEQQLEWLIPLLEGKIRSGFAMTEPQVASSDATNIECSIRRQGDSYVINGTKWW-T 589
Query: 167 NG---PDADIAVVYARTNPNADK-KQHGISTFIVEKGTPGFSKGKKLNKLGMRGSNTG-- 220
+G P + +V +T+ NA K KQ S +V+ TPG + L G + G
Sbjct: 590 SGAMDPRCRVLIVMGKTDFNAPKHKQQ--SMILVDIQTPGVQIKRPLLVFGFDDAPHGHA 647
Query: 221 ELIFENCQVPAENLLGGENKGAYVLMSGLDLERL-----VISAGPVGIMQACCDFAFNYV 275
E+ FEN +VPA+N+L GE +G + L RL +I A G MQ A +
Sbjct: 648 EISFENVRVPAKNILLGEGRGFEIAQGRLGPGRLHHCMRLIGAAERG-MQLMVQRALS-- 704
Query: 276 HERVQFGTRIGEFQLMQGKIADMHVALSASRAYLYSVAKACDR-GSINSKECAGVFLVAA 334
R FG I + +A V L +R + A DR G+ ++ + VAA
Sbjct: 705 --RKAFGKLIAQHGSFLSDLAKCRVELEQTRLLVLEAADQLDRLGNKKARGIIAMAKVAA 762
Query: 335 EN-AVKVALEAIQCLGGNGYINDYPTGRYLRDAKLYEIGAGTSEV 378
N A+KV A+Q G G +D A+ I G EV
Sbjct: 763 PNMALKVLDMAMQVHGAAGVSSDTVLAHLWATARTLRIADGPDEV 807
>gnl|CDD|145755 pfam02770, Acyl-CoA_dh_M, Acyl-CoA dehydrogenase, middle domain.
Central domain of Acyl-CoA dehydrogenase has a
beta-barrel fold.
Length = 52
Score = 77.5 bits (192), Expect = 3e-18
Identities = 28/51 (54%), Positives = 38/51 (74%)
Query: 130 CLAMSEPGSGSDVISMSLKAEKKGDMYVLNGNKFWITNGPDADIAVVYART 180
A++EPG+GSD+ S+ AE+ GD +VLNG K+WITN AD+A+V ART
Sbjct: 1 AFALTEPGAGSDLASLETTAERDGDGWVLNGRKWWITNAALADLALVLART 51
>gnl|CDD|173839 cd01150, AXO, Peroxisomal acyl-CoA oxidase. Peroxisomal acyl-CoA
oxidases (AXO) catalyze the first set in the peroxisomal
fatty acid beta-oxidation, the alpha,beta
dehydrogenation of the corresponding trans-enoyl-CoA by
FAD, which becomes reduced. In a second oxidative
half-reaction, the reduced FAD is reoxidized by
molecular oxygen. AXO is generally a homodimer, but it
has been reported to form a different type of oligomer
in yeast. There are several subtypes of AXO's, based on
substrate specificity. Palmitoyl-CoA oxidase acts on
straight-chain fatty acids and prostanoids; whereas, the
closely related Trihydroxycoprostanoly-CoA oxidase has
the greatest activity for 2-methyl branched side chains
of bile precursors. Pristanoyl-CoA oxidase, acts on
2-methyl branched fatty acids. AXO has an additional
domain, C-terminal to the region with similarity to
acyl-CoA dehydrogenases, which is included in this
alignment.
Length = 610
Score = 81.6 bits (202), Expect = 9e-17
Identities = 74/291 (25%), Positives = 114/291 (39%), Gaps = 56/291 (19%)
Query: 46 LRKVWKDFGQLGLLGITVPEEFGGSEMGYLDHVIAMEELSRSSASVGLSFVAHSNLCVNQ 105
RK D ++G L PE+ + L S+G H L N
Sbjct: 63 KRKAKTDVERMGELMADDPEKM---------LAL-TNSLGGYDLSLGAKLGLHLGLFGNA 112
Query: 106 INRHATKQQKEKYLPALCSGEKIGCLAMSEPGSGSDVISMSLKA--EKKGDMYVLN---- 159
I T + ++ +L + E IGC A +E G GS++ + A + +V+N
Sbjct: 113 IKNLGTDEHQDYWLQGANNLEIIGCFAQTELGHGSNLQGLETTATYDPLTQEFVINTPDF 172
Query: 160 -GNKFWITN-GPDADIAVVYARTNPNADKKQHGISTFIV---EKGT----PGFSKGKKLN 210
K+W N G A AVV+A+ K HG+ FIV + T PG + G
Sbjct: 173 TATKWWPGNLGKTATHAVVFAQL--ITPGKNHGLHAFIVPIRDPKTHQPLPGVTVGDIGP 230
Query: 211 KLGMRGSNTGELIFENCQVPAENLLGGENK-------GAYV------------LMSGLDL 251
K+G+ G + G L F N ++P ENLL N+ G YV ++
Sbjct: 231 KMGLNGVDNGFLQFRNVRIPRENLL---NRFGDVSPDGTYVSPFKDPNKRYGAMLGTRSG 287
Query: 252 ERLVISAGPVGIMQACCDFAFNYVHERVQFGTR-------IGEFQLMQGKI 295
R+ + ++ A Y R QFG + I ++QL Q ++
Sbjct: 288 GRVGLIYDAAMSLKKAATIAIRYSAVRRQFGPKPSDPEVQILDYQLQQYRL 338
>gnl|CDD|173852 cd01163, DszC, Dibenzothiophene (DBT) desulfurization enzyme C.
DszC is a flavin reductase dependent enzyme, which
catalyzes the first two steps of DBT desulfurization in
mesophilic bacteria. DszC converts DBT to DBT-sulfoxide,
which is then converted to DBT-sulfone. Bacteria with
this enzyme are candidates for the removal of organic
sulfur compounds from fossil fuels, which pollute the
environment. An equivalent enzyme tdsC, is found in
thermophilic bacteria. This alignment also contains a
closely related uncharacterized subgroup.
Length = 377
Score = 79.7 bits (197), Expect = 2e-16
Identities = 71/308 (23%), Positives = 126/308 (40%), Gaps = 34/308 (11%)
Query: 28 THITPIAADIDSTNDFKDLRKVW-----KDFGQLGLLGITVPEEFGGSEMGYLDHVIAME 82
P+AA I +D ++ Q GL + VP+E+GG D +
Sbjct: 1 ARARPLAARIAEGAAERDRQRGLPYEEVALLRQSGLGTLRVPKEYGGLGASLPDLYEVVR 60
Query: 83 ELSRSSASVGLSFVAHSNLCVNQINRHATKQQKEKYLPALCSGEKIGCLAMSEPGS---G 139
EL+ + +++ + AH V + +Q ++++ + +G G A+SE GS G
Sbjct: 61 ELAAADSNIAQALRAHFGF-VEALLLAGPEQFRKRWFGRVLNGWIFGN-AVSERGSVRPG 118
Query: 140 SDVISMSLKAEKKGDMYVLNGNKFWITNGPDADIAVVYARTNPNADKKQHGISTFIVEKG 199
+ + + + G YVLNG KF+ T +D V A + V
Sbjct: 119 TFLTAT----VRDGGGYVLNGKKFYSTGALFSDWVTVSA-LDEEGKLVF-----AAVPTD 168
Query: 200 TPGFSKGKKLNKLGMRGSNTGELIFENCQVPAENLLGGEN---KGAYVLMSGLDLERLVI 256
PG + + G R + +G + F+N +V + +L N +G + + +LV+
Sbjct: 169 RPGITVVDDWDGFGQRLTASGTVTFDNVRVEPDEVLPRPNAPDRGTLLTA----IYQLVL 224
Query: 257 SAGPVGIMQACCDFAFNYVHERVQ------FGTRIGEFQLMQGKIADMHVALSASRAYLY 310
+A GI +A D A YV R + + + + Q + D+ L A+ A +
Sbjct: 225 AAVLAGIARAALDDAVAYVRSRTRPWIHSGAESARDDPYVQQ-VVGDLAARLHAAEALVL 283
Query: 311 SVAKACDR 318
A+A D
Sbjct: 284 QAARALDA 291
>gnl|CDD|236528 PRK09463, fadE, acyl-CoA dehydrogenase; Reviewed.
Length = 777
Score = 78.7 bits (195), Expect = 9e-16
Identities = 96/335 (28%), Positives = 149/335 (44%), Gaps = 64/335 (19%)
Query: 11 LT-EEQNKLRETVASYCKTHITPIAADIDSTNDFKDLRK-VWKDFGQLGLLGITVPEEFG 68
LT EEQ L V C+ + D T++ DL VW+ + G G+ +P+E+G
Sbjct: 79 LTAEEQAFLDGPVEELCR-----MVNDWQITHELADLPPEVWQFIKEHGFFGMIIPKEYG 133
Query: 69 GSEMGYLDHVIAMEEL-SRSSA---SVGLSFVAHS----NLCVNQINRHATKQQKEKYLP 120
G E H +++L SRS +V V +S L + + T +QK+ YLP
Sbjct: 134 GLEFSAYAHSRVLQKLASRSGTLAVTVM---VPNSLGPGELLL----HYGTDEQKDHYLP 186
Query: 121 ALCSGEKIGCLAMSEPGSGSDVISMS-----LKAEKKGDMYV---LNGNKFWITNGPDAD 172
L GE+I C A++ P +GSD S+ K E +G+ + L NK +IT P
Sbjct: 187 RLARGEEIPCFALTSPEAGSDAGSIPDTGVVCKGEWQGEEVLGMRLTWNKRYITLAP--- 243
Query: 173 IAVV-------YARTNPN---ADKKQHGISTFIVEKGTPGFSKGKKLNKLG---MRGSNT 219
IA V Y +P+ DK+ GI+ ++ TPG G++ L G
Sbjct: 244 IATVLGLAFKLY---DPDGLLGDKEDLGITCALIPTDTPGVEIGRRHFPLNVPFQNGPTR 300
Query: 220 GELIFENCQVPAENLLGGEN---KGAYVLMSGLDLERLVIS--AGPVGIMQACCDFAFNY 274
G+ +F +P + ++GG +G +LM L + R IS + G + Y
Sbjct: 301 GKDVF----IPLDYIIGGPKMAGQGWRMLMECLSVGR-GISLPSNSTGGAKLAALATGAY 355
Query: 275 VHERVQFGTRIGEFQLMQGKIADMHVALSASRAYL 309
R QF IG+F+ ++ +A + A AYL
Sbjct: 356 ARIRRQFKLPIGKFEGIEEPLARI-----AGNAYL 385
>gnl|CDD|183199 PRK11561, PRK11561, isovaleryl CoA dehydrogenase; Provisional.
Length = 538
Score = 77.1 bits (190), Expect = 3e-15
Identities = 97/344 (28%), Positives = 154/344 (44%), Gaps = 56/344 (16%)
Query: 77 HVIAMEELSRSSASVGLS--FVAHSN-----LCVNQINRHATK--QQK-----EKYLPAL 122
H +A EE +RS A V + F+ H+ LC + AT Q + +L L
Sbjct: 101 HNLAWEEDARSGAFVARAARFMLHAQVEAGTLCPITMTFAATPLLLQMLPAPFQDWLTPL 160
Query: 123 CS----------GEKIGCL---AMSEPGSGSDVISMSLKAEK-KGDMYVLNGNKFWITNG 168
S G+K G L M+E GSDV+S + +AE+ Y L G+K W +
Sbjct: 161 LSDRYDSHLLPGGQKRGLLIGMGMTEKQGGSDVLSNTTRAERLADGSYRLVGHK-WFFSV 219
Query: 169 PDADIAVVYARTNPNADKKQHGISTFIVEKGTPGFSKG----KKL-NKLGMRGSNTGELI 223
P +D +V A+ + G+S F V + P + ++L +KLG R + + E+
Sbjct: 220 PQSDAHLVLAQA-------KGGLSCFFVPRFLPDGQRNAIRLERLKDKLGNRSNASSEVE 272
Query: 224 FENCQVPAENLLGGENKGA-YVL-MSGLDLERLVISAGPVGIMQACCDFAFNYVHERVQF 281
F++ LLG E +G +L M G+ R + G G+M+ A + H+R F
Sbjct: 273 FQDA---IGWLLGEEGEGIRLILKMGGM--TRFDCALGSHGLMRRAFSVAIYHAHQRQVF 327
Query: 282 GTRIGEFQLMQGKIADMHVALSASRAYLYSVAKACD-RGSINSKECAGVFLVAAENAVK- 339
G + E LM+ ++ M + L A L+ +A+A D R A +F AA+ +
Sbjct: 328 GKPLIEQPLMRQVLSRMALQLEGQTALLFRLARAWDRRADAKEALWARLFTPAAKFVICK 387
Query: 340 -----VALEAIQCLGGNGYINDYPTGRYLRDAKLYEIGAGTSEV 378
VA EA++ LGG GY + R R+ + I G+ +
Sbjct: 388 RGIPFVA-EAMEVLGGIGYCEESELPRLYREMPVNSIWEGSGNI 430
>gnl|CDD|188537 TIGR04022, sulfur_SfnB, sulfur acquisition oxidoreductase, SfnB
family. Members of this protein family belong to the
greater family of acyl-CoA dehydrogenases. This family
includes the sulfate starvation induced protein SfnB of
Pseudomonas putida strain DS1, which is both encoded
nearby to and phylogenetically closely correlated with
the dimethyl sulphone monooxygenase SfnG. This family
shows considerable sequence similarity to the
Rhodococcus dibenzothiophene desulfurization enzyme
DszC, although that enzyme falls outside of the scope of
this family [Central intermediary metabolism, Sulfur
metabolism].
Length = 391
Score = 69.6 bits (171), Expect = 4e-13
Identities = 87/324 (26%), Positives = 137/324 (42%), Gaps = 64/324 (19%)
Query: 53 FGQLGLLGITVPEEFGGSEMGY--LDHVIAMEELSRSSASVGL----SFVAHSNLCVNQI 106
F Q GL GITVP +GG+ + Y L VIA+ +S + S+G F A L +
Sbjct: 42 FSQSGLWGITVPRAYGGAGVSYATLAEVIAI--ISAADPSLGQIPQNHFYALEVLRLT-- 97
Query: 107 NRHATKQQKEKYLPALCSGEKIGCLAMSEPGSGSDVISMSLKAEKKGDMYVLNGNKFWIT 166
+++QK + + +GE+ G A SE G+ +V+ + + GD Y LNG KF+ T
Sbjct: 98 ---GSEEQKRFFFGEVLAGERFGN-AFSERGT-RNVLDFQTRLRRDGDGYRLNGRKFYST 152
Query: 167 NGPDADIAVVYARTNPNADKKQHGISTFIVEKGTPGFSKGKKLNKLGMRGSNTGELIFEN 226
A V A D + F V + PG + + G R + +G ++ ++
Sbjct: 153 GALFAHWIPVLA-----LDDDGRPVLAF-VPRDAPGLTVIDDWSGFGQRTTASGTVLLDD 206
Query: 227 CQVPAENLLGGENKGAYVLMSGLDLERLVISAGPVG-IMQACCDF---------AFNYVH 276
+VPAE+++ + A+ +R AGPV I+ A D +V
Sbjct: 207 VRVPAEHVVPIQR--AF--------DRPTA-AGPVAQIIHAAIDAGIARAALADTLAFVR 255
Query: 277 ER--------VQFGTRIGEFQLMQGKIADMHVALSASRAYLYSVAKACDRGSINSKECAG 328
ER V+ R + L ++ D+ + L A+ A L +A D E
Sbjct: 256 ERARPWIDSGVE---RASDDPLTIAEVGDLAIRLHAAEALLERAGRAVDAARAEPTE-ES 311
Query: 329 VFLVAAENAV--------KVALEA 344
V AA AV ++AL A
Sbjct: 312 V--AAASIAVAEAKVLTTEIALLA 333
>gnl|CDD|215342 PLN02636, PLN02636, acyl-coenzyme A oxidase.
Length = 686
Score = 65.3 bits (159), Expect = 2e-11
Identities = 69/269 (25%), Positives = 113/269 (42%), Gaps = 44/269 (16%)
Query: 81 MEELSRSSASVGLSFVAHSNLCVNQINRHATKQQKEKYLPALCSGEKIGCLAMSEPGSGS 140
E + S+G+ +L + TK+ ++KY + + + GC AM+E GS
Sbjct: 127 TEAVGSVDMSLGIKLGVQYSLWGGSVINLGTKKHRDKYFDGIDNLDYPGCFAMTELHHGS 186
Query: 141 DVISMSLKA--EKKGDMYVLN-----GNKFWITNGP-DADIAVVYARTN-PNADKK---Q 188
+V + A + D +V+N K+WI N A V+AR P D K
Sbjct: 187 NVQGLQTTATFDPLTDEFVINTPNDGAIKWWIGNAAVHGKFATVFARLKLPTHDSKGVSD 246
Query: 189 HGISTFIV-------EKGTPGFSKGKKLNKLGMRGSNTGELIFENCQVPAENLLG----- 236
G+ FIV + PG +K+G+ G + G L F + ++P +NLL
Sbjct: 247 MGVHAFIVPIRDMKTHQVLPGVEIRDCGHKVGLNGVDNGALRFRSVRIPRDNLLNRFGDV 306
Query: 237 ---GE--------NKGAYVLMSGLDLERLVISAGPVGIMQACCDFAFNYVHERVQFG--- 282
G+ NK + L R+ ++ G VG+++A A Y R QFG
Sbjct: 307 SRDGKYTSSLPTINKRFAATLGELVGGRVGLAYGSVGVLKASNTIAIRYSLLRQQFGPPK 366
Query: 283 ---TRIGEFQLMQGKIADMHVALSASRAY 308
I ++Q Q K+ M L+++ A+
Sbjct: 367 QPEISILDYQSQQHKLMPM---LASTYAF 392
>gnl|CDD|219705 pfam08028, Acyl-CoA_dh_2, Acyl-CoA dehydrogenase, C-terminal
domain.
Length = 134
Score = 57.7 bits (140), Expect = 2e-10
Identities = 28/123 (22%), Positives = 42/123 (34%), Gaps = 10/123 (8%)
Query: 254 LVISAGPVGIMQACCDFAFNYVHERVQ--FGTRIGEFQLMQGKIADMHVALSASRAYLYS 311
L +A +G + ERV+ G + E Q ++A+ + A+R L
Sbjct: 1 LGFAAPALGAARGALAAFIERARERVRAYGGAPLAEDPATQTRLAEAAAEIDAARLLLER 60
Query: 312 VAKACDRGSINSKECAGVFLV--------AAENAVKVALEAIQCLGGNGYINDYPTGRYL 363
A + E AAE AV + GG+ D P R+
Sbjct: 61 AADRIWAHADRGDEVTPEERARARRDAALAAELAVAAVDRLFRAAGGSALFKDSPLQRFW 120
Query: 364 RDA 366
RDA
Sbjct: 121 RDA 123
>gnl|CDD|178062 PLN02443, PLN02443, acyl-coenzyme A oxidase.
Length = 664
Score = 61.8 bits (150), Expect = 3e-10
Identities = 67/230 (29%), Positives = 107/230 (46%), Gaps = 36/230 (15%)
Query: 98 HSNLCVNQINRHATKQQKEKYLPALCSGEKIGCLAMSEPGSGSDVISMSLKA--EKKGDM 155
H + V I T++Q++K+LP + IGC A +E G GS+V + A + K D
Sbjct: 102 HWGMFVPAIKGQGTEEQQKKWLPLAYKMQIIGCYAQTELGHGSNVQGLETTATFDPKTDE 161
Query: 156 YVLN-----GNKFWITN-GPDADIAVVYARTNPNADKKQHGISTFIVE-------KGTPG 202
+V++ +K+W G + AVVYAR + K HGI FIV+ PG
Sbjct: 162 FVIHSPTLTSSKWWPGGLGKVSTHAVVYARL--ITNGKDHGIHGFIVQLRSLDDHSPLPG 219
Query: 203 FSKGKKLNKLGMRGSNT---GELIFENCQVPAENLLGGENK----GAYV-------LMSG 248
+ G K G NT G L F++ ++P + +L +K G YV L+ G
Sbjct: 220 VTVGDIGMKFGNGAYNTMDNGFLRFDHVRIPRDQMLMRLSKVTREGKYVQSDVPRQLVYG 279
Query: 249 --LDLERLVISAGPVGIMQACCDFAFNYVHERVQFGTRIG--EFQLMQGK 294
+ + + +++ + +A C A Y R QFG++ G E Q++ K
Sbjct: 280 TMVYVRQTIVADASTALSRAVC-IATRYSAVRRQFGSQDGGPETQVIDYK 328
>gnl|CDD|185636 PTZ00457, PTZ00457, acyl-CoA dehydrogenase; Provisional.
Length = 520
Score = 60.7 bits (147), Expect = 5e-10
Identities = 64/228 (28%), Positives = 97/228 (42%), Gaps = 24/228 (10%)
Query: 44 KDLRKVWKDFGQLGLLGITVPEEFGGSEMGYLDHVIAMEELSRSSASVGLSFVAHSNLCV 103
+ +R K G L G + E+GG +G+ H + EE+ + S LS + HS C
Sbjct: 53 EQIRSNDKILGNLY--GARIATEYGGLGLGHTAHALIYEEVGTNCDSKLLSTIQHSGFCT 110
Query: 104 NQINRHATKQQKEKYLPALCSGEKIGCLAMSEPGSGSDVISMSLKAEKKGD-MYVLNGNK 162
++ +K+ K KYL A+ G + A E G GSD+ + KA D YVL G K
Sbjct: 111 YLLSTVGSKELKGKYLTAMSDGTIMMGWATEE-GCGSDISMNTTKASLTDDGSYVLTGQK 169
Query: 163 FWITNGPDADIAVVYARTNPNADKKQHGI-----STFIVEKGTPGFSKGKKLNKLGMRGS 217
A +V A+T ++ S FI K G S
Sbjct: 170 RCE-FAASATHFLVLAKTLTQTAAEEGATEVSRNSFFICAKDAKGVS------------V 216
Query: 218 NTGELIFENCQVPAENLLGGENKGAYVLMSGLDLERLVISAGPVGIMQ 265
N ++FEN PA +++G +G M L E+ + +A +GIM+
Sbjct: 217 NGDSVVFEN--TPAADVVGVVGEGFKDAMITLFTEQYLYAASLLGIMK 262
>gnl|CDD|185639 PTZ00460, PTZ00460, acyl-CoA dehydrogenase; Provisional.
Length = 646
Score = 58.7 bits (142), Expect = 2e-09
Identities = 41/141 (29%), Positives = 69/141 (48%), Gaps = 17/141 (12%)
Query: 110 ATKQQKEKYLPALCSGEKIGCLAMSEPGSGSDVISMSLKA--EKKGDMYVLN-----GNK 162
T +Q ++P+L + E +GC A +E G GSDV ++ A +K+ + +V++ K
Sbjct: 110 GTDEQINLWMPSLLNFEIVGCYAQTELGHGSDVQNLETTATYDKQTNEFVIHTPSVEAVK 169
Query: 163 FWITN-GPDADIAVVYARTNPNADKKQHGISTFIVE-------KGTPGFSKGKKLNKLGM 214
FW G + A+VYA+ N K G+ F+V K G G K+G
Sbjct: 170 FWPGELGFLCNFALVYAKLIVNG--KNKGVHPFMVRIRDKETHKPLQGVEVGDIGPKMGY 227
Query: 215 RGSNTGELIFENCQVPAENLL 235
+ G L F++ ++P ++LL
Sbjct: 228 AVKDNGFLSFDHYRIPLDSLL 248
>gnl|CDD|173848 cd01159, NcnH, Naphthocyclinone hydroxylase. Naphthocyclinone is
an aromatic polyketide and an antibiotic, which is
active against Gram-positive bacteria. Polyketides are
secondary metabolites, which have important biological
functions such as antitumor, immunosupressive or
antibiotic activities. NcnH is a hydroxylase involved in
the biosynthesis of naphthocyclinone and possibly other
polyketides.
Length = 370
Score = 53.5 bits (129), Expect = 7e-08
Identities = 70/345 (20%), Positives = 128/345 (37%), Gaps = 56/345 (16%)
Query: 51 KDFGQLGLLGITVPEEFGGSEMGYLDHVIAMEELSRSSASVG--LSFVAHSNLCVNQINR 108
+ ++G + VP+ +GG E + + A+ L+ + S S VA + +
Sbjct: 29 RALREIGFFRMFVPKRYGGLEGDFAEFAEAIATLAEACGSAAWVASIVATHSRMLAAFPP 88
Query: 109 HATKQQKEKYLPALCSGEKIGCLAMSEPGSGSDV-ISMSL----KAEKKGDMYVLNGNKF 163
A Q+E + G G D ++ S +AE+ Y ++G
Sbjct: 89 EA---QEEVW------------------GDGPDTLLAGSYAPGGRAERVDGGYRVSGTWP 127
Query: 164 WITNGPDADIAVVYARTNPNADKKQHGISTFIVEKGTPGFSKGKKLNKLGMRGSNTGELI 223
+ + AD +V A + F+V + + + +G+RG+ + ++
Sbjct: 128 FASGCDHADWILVGAIVEDDDGGPL--PRAFVVPRA--EYEIVDTWHVVGLRGTGSNTVV 183
Query: 224 FENCQVPAENLL--GGENKGAYVLMSGLDLER--------LVISAGPVGIMQACCDFAFN 273
++ VP L G G + R L +A +G +
Sbjct: 184 VDDVFVPEHRTLTAGDMMAGDGPG-GSTPVYRMPLRQVFPLSFAAVSLGAAEGALAEFLE 242
Query: 274 YVHERVQ---FGTRIGEFQLMQGKIADMHVALSASRAYLYSV-----AKACDRGSINSKE 325
+RV+ ++ E + Q ++A+ L A+RA+L A A G I+ +E
Sbjct: 243 LAGKRVRQYGAAVKMAEAPITQLRLAEAAAELDAARAFLERATRDLWAHALAGGPIDVEE 302
Query: 326 CAGVFLVAAENAVKVALEAIQCL----GGNGYINDYPTGRYLRDA 366
A + AA A K++ EA+ L GG+ P R RD
Sbjct: 303 RARIRRDAA-YAAKLSAEAVDRLFHAAGGSALYTASPLQRIWRDI 346
>gnl|CDD|215178 PLN02312, PLN02312, acyl-CoA oxidase.
Length = 680
Score = 51.7 bits (124), Expect = 4e-07
Identities = 43/152 (28%), Positives = 69/152 (45%), Gaps = 16/152 (10%)
Query: 98 HSNLCVNQINRHATKQQKEKYLPALCSGEKIGCLAMSEPGSGSDV--ISMSLKAEKKGDM 155
H L I TK+ +K+L GC AM+E G GS+V I + K +
Sbjct: 156 HFFLWGGAIKFLGTKRHHDKWLKDTEDYVVKGCFAMTELGHGSNVRGIETVTTYDPKTEE 215
Query: 156 YVLN-----GNKFWITNGPD-ADIAVVYARTNPNADKKQHGISTFIV----EKGT--PGF 203
+V+N K+WI + A +V+++ + N K G+ FI + G P
Sbjct: 216 FVINTPCESAQKYWIGGAANHATHTIVFSQLHING--KNEGVHAFIAQIRDQDGNICPNI 273
Query: 204 SKGKKLNKLGMRGSNTGELIFENCQVPAENLL 235
+K+G+ G + G + F+N ++P ENLL
Sbjct: 274 RIADCGHKIGLNGVDNGRIWFDNLRIPRENLL 305
>gnl|CDD|143441 cd07123, ALDH_F4-17_P5CDH, Delta(1)-pyrroline-5-carboxylate
dehydrogenase, ALDH families 4 and 17.
Delta(1)-pyrroline-5-carboxylate dehydrogenase
(EC=1.5.1.12 ), families 4 and 17: a proline catabolic
enzyme of the aldehyde dehydrogenase (ALDH) protein
superfamily. Delta(1)-pyrroline-5-carboxylate
dehydrogenase (P5CDH), also known as ALDH4A1 in humans,
is a mitochondrial homodimer involved in proline
degradation and catalyzes the NAD + -dependent
conversion of P5C to glutamate. This is a necessary step
in the pathway interconnecting the urea and
tricarboxylic acid cycles. The preferred substrate is
glutamic gamma-semialdehyde, other substrates include
succinic, glutaric and adipic semialdehydes. Also
included in this CD is the Aldh17 Drosophila
melanogaster (Q9VUC0) P5CDH and similar sequences.
Length = 522
Score = 31.0 bits (71), Expect = 1.0
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 335 ENAVKVALEAIQCLGGNGYINDYPTG 360
A++ A +A++ GN YIND PTG
Sbjct: 456 RKAIREATDALRNAAGNFYINDKPTG 481
>gnl|CDD|222318 pfam13685, Fe-ADH_2, Iron-containing alcohol dehydrogenase.
Length = 247
Score = 29.4 bits (67), Expect = 2.4
Identities = 12/41 (29%), Positives = 19/41 (46%)
Query: 100 NLCVNQINRHATKQQKEKYLPALCSGEKIGCLAMSEPGSGS 140
L V +++ + E+ L AL + L MS P SG+
Sbjct: 184 ALVVENLDKLLADPRDEEALKALLEALALSGLGMSRPASGA 224
>gnl|CDD|183953 PRK13290, ectC, L-ectoine synthase; Reviewed.
Length = 125
Score = 28.7 bits (65), Expect = 2.6
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 6/34 (17%)
Query: 342 LEAIQCLGGNGYINDYPTGRYLRDAKLYEIGAGT 375
LEA+ C+ G G + D TG +++ I GT
Sbjct: 56 LEAVYCIEGEGEVEDLATG------EVHPIRPGT 83
>gnl|CDD|148137 pfam06339, Ectoine_synth, Ectoine synthase. This family consists
of several bacterial ectoine synthase proteins. The
ectABC genes encode the diaminobutyric acid
acetyltransferase (EctA), the diaminobutyric acid
aminotransferase (EctB), and the ectoine synthase
(EctC). Together these proteins constitute the ectoine
biosynthetic pathway.
Length = 127
Score = 28.3 bits (64), Expect = 2.9
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 6/34 (17%)
Query: 342 LEAIQCLGGNGYINDYPTGRYLRDAKLYEIGAGT 375
LEA+ C+ G G I D TG +++ I GT
Sbjct: 56 LEAVYCIEGEGEIEDLATG------EVHPIKPGT 83
>gnl|CDD|212508 cd11649, RsmI_like, Uncharacterized subfamily of the tetrapyrrole
methylase family similar to ribosomal RNA small subunit
methyltransferase I (RsmI). Tetrapyrrole methylase uses
S-AdoMet (S-adenosyl-L-methionine or SAM) in the
methylation of diverse substrates. This uncharacterized
subfamily exhibits sequence similarity to the ribosomal
RNA small subunit methyltransferase I (RsmI), which
catalyzes the 2-O-methylation of the ribose of cytidine
1402 (C1402) in 16S rRNA.
Length = 229
Score = 29.1 bits (66), Expect = 3.2
Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 13/75 (17%)
Query: 74 YLDHVIAMEELSRSSASVGLSFVAHS----NLCVNQINRHATKQQKEKYLPALCSGEKI- 128
LDH I E +A L + L + +N H ++ + L L +G+ I
Sbjct: 27 SLDHFIVENE---KTARRFLKKLDPEKPIQELTFHLLNEHTPEEDLPELLAPLKAGKDIG 83
Query: 129 -----GCLAMSEPGS 138
GC +++PG+
Sbjct: 84 LISEAGCPGVADPGA 98
>gnl|CDD|233324 TIGR01236, D1pyr5carbox1, delta-1-pyrroline-5-carboxylate
dehydrogenase, group 1. This model represents one of
two related branches of delta-1-pyrroline-5-carboxylate
dehydrogenase. The two branches are not as closely
related to each other as some aldehyde dehydrogenases
are to this branch, and separate models are built for
this reason. The enzyme is the second of two in the
degradation of proline to glutamate [Energy metabolism,
Amino acids and amines].
Length = 532
Score = 29.0 bits (65), Expect = 5.1
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 337 AVKVALEAIQCLGGNGYINDYPTG 360
A+ A + ++ GN YIND PTG
Sbjct: 458 AILEADKVLRFAAGNFYINDKPTG 481
>gnl|CDD|219125 pfam06662, C5-epim_C, D-glucuronyl C5-epimerase C-terminus. This
family represents the C-terminus of D-glucuronyl
C5-epimerase (EC:5.1.3.-). Glucuronyl C5-epimerases
catalyze the conversion of D-glucuronic acid (GlcUA) to
L-iduronic acid (IdceA) units during the biosynthesis of
glycosaminoglycans.
Length = 189
Score = 27.7 bits (62), Expect = 7.6
Identities = 14/49 (28%), Positives = 18/49 (36%), Gaps = 4/49 (8%)
Query: 7 TIYDLTEEQNKLRETVAS--YCKTHITPIAA--DIDSTNDFKDLRKVWK 51
+ YDL +A Y HI + A I FKD + WK
Sbjct: 140 SYYDLRHTTLGNPPNLARWDYHALHINLLLALYSITGDPIFKDYAERWK 188
>gnl|CDD|224914 COG2003, RadC, DNA repair proteins [DNA replication, recombination,
and repair].
Length = 224
Score = 28.0 bits (63), Expect = 8.4
Identities = 21/65 (32%), Positives = 24/65 (36%), Gaps = 20/65 (30%)
Query: 29 HITPIAADIDSTNDFKDLRKVWKDFGQLGLLGITVPEEFGGSEMGYLDHVIAMEELSRSS 88
TP ADI T K+ LLGI + LDH+I E L S
Sbjct: 179 DPTPSRADILITERLKEA---------GKLLGIRL-----------LDHIIIGEGLYISF 218
Query: 89 ASVGL 93
A GL
Sbjct: 219 AERGL 223
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.135 0.393
Gapped
Lambda K H
0.267 0.0803 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 19,832,114
Number of extensions: 1908760
Number of successful extensions: 1495
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1399
Number of HSP's successfully gapped: 52
Length of query: 392
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 293
Effective length of database: 6,546,556
Effective search space: 1918140908
Effective search space used: 1918140908
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (26.7 bits)