RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12318
(392 letters)
>1ivh_A Isovaleryl-COA dehydrogenase; oxidoreductase, acyl-COA
dehydrogenase, flavoprotein, isovaleric acidemia; HET:
FAD COS; 2.60A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1
Length = 394
Score = 684 bits (1768), Expect = 0.0
Identities = 249/391 (63%), Positives = 311/391 (79%)
Query: 2 YKIDDTIYDLTEEQNKLRETVASYCKTHITPIAADIDSTNDFKDLRKVWKDFGQLGLLGI 61
+DD I L+EEQ +LR+T+A + + H+ P A +ID +N+FK+LR+ WK G LG+LGI
Sbjct: 4 LPVDDAINGLSEEQRQLRQTMAKFLQEHLAPKAQEIDRSNEFKNLREFWKQLGNLGVLGI 63
Query: 62 TVPEEFGGSEMGYLDHVIAMEELSRSSASVGLSFVAHSNLCVNQINRHATKQQKEKYLPA 121
T P ++GGS +GYL+HV+ MEE+SR+S +VGLS+ AHSNLC+NQ+ R+ + QKEKYLP
Sbjct: 64 TAPVQYGGSGLGYLEHVLVMEEISRASGAVGLSYGAHSNLCINQLVRNGNEAQKEKYLPK 123
Query: 122 LCSGEKIGCLAMSEPGSGSDVISMSLKAEKKGDMYVLNGNKFWITNGPDADIAVVYARTN 181
L SGE IG LAMSEP +GSDV+SM LKAEKKG+ Y+LNGNKFWITNGPDAD+ +VYA+T+
Sbjct: 124 LISGEYIGALAMSEPNAGSDVVSMKLKAEKKGNHYILNGNKFWITNGPDADVLIVYAKTD 183
Query: 182 PNADKKQHGISTFIVEKGTPGFSKGKKLNKLGMRGSNTGELIFENCQVPAENLLGGENKG 241
A GI+ FIVEKG PGFS KKL+KLGMRGSNT ELIFE+C++PA N+LG ENKG
Sbjct: 184 LAAVPASRGITAFIVEKGMPGFSTSKKLDKLGMRGSNTCELIFEDCKIPAANILGHENKG 243
Query: 242 AYVLMSGLDLERLVISAGPVGIMQACCDFAFNYVHERVQFGTRIGEFQLMQGKIADMHVA 301
YVLMSGLDLERLV++ GP+G+MQA D Y+H R FG +IG FQLMQGK+ADM+
Sbjct: 244 VYVLMSGLDLERLVLAGGPLGLMQAVLDHTIPYLHVREAFGQKIGHFQLMQGKMADMYTR 303
Query: 302 LSASRAYLYSVAKACDRGSINSKECAGVFLVAAENAVKVALEAIQCLGGNGYINDYPTGR 361
L A R Y+Y+VAKACD G +K+CAGV L +AE A +VAL+ IQC GGNGYIND+P GR
Sbjct: 304 LMACRQYVYNVAKACDEGHCTAKDCAGVILYSAECATQVALDGIQCFGGNGYINDFPMGR 363
Query: 362 YLRDAKLYEIGAGTSEVRRIVIGRSINAEYK 392
+LRDAKLYEIGAGTSEVRR+VIGR+ NA++
Sbjct: 364 FLRDAKLYEIGAGTSEVRRLVIGRAFNADFH 394
>3mpi_A Glutaryl-COA dehydrogenase; alpha-beta fold, oxidoreductase; HET:
FAD GRA; 2.05A {Desulfococcus multivorans} PDB: 3mpj_A*
Length = 397
Score = 611 bits (1579), Expect = 0.0
Identities = 139/383 (36%), Positives = 209/383 (54%), Gaps = 8/383 (2%)
Query: 9 YDLTEEQNKLRETVASYCKTHITPIAADIDSTNDFKDLRKVWKDFGQLGLLGITVPEEFG 68
++L++E L++ V ++ I P A D+ N F + + G+LG G +PEE+G
Sbjct: 3 FNLSKELQMLQKEVRNFVNKKIVPFADQWDNENHF-PYEEAVRPMGELGFFGTVIPEEYG 61
Query: 69 GSEM--GYLDHVIAMEELSRSSASVGLSFVAHSNLCVNQINRHATKQQKEKYLPALCSGE 126
G M G+L +I EE++R S+++ + C I + ++ K+KY+P L S E
Sbjct: 62 GEGMDQGWLAAMIVTEEIARGSSALRVQLNMEVLGCAYTILTYGSEALKKKYVPKLSSAE 121
Query: 127 KIGCLAMSEPGSGSDVISMSLKAEKKGDMYVLNGNKFWITNGPDADIAVVYARTNPNADK 186
+G ++EP +GSDV++MS AE KGD ++LNG+K WI+N AD+ + YA T+
Sbjct: 122 FLGGFGITEPDAGSDVMAMSSTAEDKGDHWLLNGSKTWISNAAQADVLIYYAYTDK--AA 179
Query: 187 KQHGISTFIVE-KGTPGFSKGKKLNKLGMRGSNTGELIFENCQVPAENLLGGENKGAYVL 245
G+S F++E + PG KLG S TGEL +N +VP EN+LG GA ++
Sbjct: 180 GSRGLSAFVIEPRNFPGIKTSNL-EKLGSHASPTGELFLDNVKVPKENILGKPGDGARIV 238
Query: 246 MSGLDLERLVISAGPVGIMQACCDFAFNYVHERVQFGTRIGEFQLMQGKIADMHVALSAS 305
L+ RL +AG VG+ QAC D A Y +ER QFG IG+FQ+ Q IA M V + A+
Sbjct: 239 FGSLNHTRLSAAAGGVGLAQACLDAAIKYCNERRQFGKPIGDFQMNQDMIAQMAVEVEAA 298
Query: 306 RAYLYSVAKACDRGSIN-SKECAGVFLVAAENAVKVALEAIQCLGGNGYINDYPTGRYLR 364
R Y A A D G +N + A A E K A A++ LG GY +YP R+ R
Sbjct: 299 RLLAYKAAAAKDEGRLNNGLDVAMAKYAAGEAVSKCANYAMRILGAYGYSTEYPVARFYR 358
Query: 365 DAKLYEIGAGTSEVRRIVIGRSI 387
DA Y + G++ + +++I
Sbjct: 359 DAPTYYMVEGSANICKMIIALDQ 381
>3m9v_A FAD-dependent oxidoreductase; KIJD3, fatty acyl-COA dehydrogenase
family, kijanose, kijani FAD, flavoprotein; HET: TYD;
2.05A {Actinomadura kijaniata}
Length = 439
Score = 526 bits (1358), Expect = 0.0
Identities = 82/395 (20%), Positives = 155/395 (39%), Gaps = 26/395 (6%)
Query: 9 YDLTEEQNKLRETVASYCKTHITPIAADIDSTNDFKDLRKVWKDFGQLGLLGITVPEEFG 68
+T L + +A++ I AA+ D F + + GL+G TVP E G
Sbjct: 18 APVTPAGRVLLDRLAAHLP-RIRSTAAEHDRDGTFP--TDTFDALRKDGLMGATVPAELG 74
Query: 69 GSEMGYLDHV-IAMEELSRSSASVGLSFVAHSNLCVNQINRHATKQQKEKYLPALCSGEK 127
G + L V +A+ ++R+ AS L+ + + ++ + L
Sbjct: 75 GLGVDRLYDVAVALLAVARADASTALALHMQLSRGLTLGYEWRHGDERARTLAERILRGM 134
Query: 128 IGCLAMSEPGSGSDVISMSLKAEKKGDMYVLNGNKFWITNGPDADIAVVYARTNPNADKK 187
+ A+ G +++ ++L+G K ++ P V+ ART+
Sbjct: 135 VAGDAVVCSGIKDHHTAVTTLRPDGAGGWLLSGRKTLVSMAPVGTHFVINARTDG--TDG 192
Query: 188 QHGISTFIVEKGTPGFSKGKKLNKLGMRGSNTGELIFENCQVPAENLLGGENKGAY--VL 245
+++ +V + TPGF+ + LGMR S T +++F++C +PA+++L + GA +
Sbjct: 193 PPRLASPVVTRDTPGFTVLDNWDGLGMRASGTVDIVFDDCPIPADHVLMRDPVGARNDAV 252
Query: 246 MSGLDLERLVISAGPVGIMQACCDFAFNYVHERVQFGTRIGEFQLMQGKIADMHVALSAS 305
++G + + + VG+ QA D A + R + + A++ L A
Sbjct: 253 LAGQTVSSVSVLGVYVGVAQAAYDTAVAALERRPEPPQAAALTLV-----AEIDSRLYAL 307
Query: 306 RAYLYSVAKACD------------RGSINSKECAGVFLVAAENAVKVALEAIQCLGGNGY 353
RA S A D RG + L A ++ + + +GG Y
Sbjct: 308 RATAGSALTAADALSADLSGDMDERGRQMMRHFQCAKLAVNRLAPEIVSDCLSLVGGASY 367
Query: 354 INDYPTGRYLRDAKLYEIGAGTSEVRRI-VIGRSI 387
+P R LRD + + V + +
Sbjct: 368 TAGHPLARLLRDVQAGRFMQPYAYVDAVDFLSAQA 402
>1r2j_A Protein FKBI; polyketide synthase, polyketide, acyl-COA
dehydrogenase, , aldehyde dehydrogenase, oxidoreductase;
HET: FAD; 2.10A {Streptomyces hygroscopicus} SCOP:
a.29.3.1 e.6.1.1
Length = 366
Score = 519 bits (1338), Expect = 0.0
Identities = 99/382 (25%), Positives = 158/382 (41%), Gaps = 20/382 (5%)
Query: 11 LTEEQNKLRETVASYCKTHITPIAADIDSTNDFKDLRKVWKDFGQLGLLGITVPEEFGGS 70
+ E + + AA+ D++ + R + G GLL V E GG
Sbjct: 1 MPERD--------ALLTDLVGDRAAEWDTSGELP--RDLLVRLGADGLLCAEVAAEHGGL 50
Query: 71 EMGYLDHVIAMEELSRSSASVGLSFVAHSNLCVNQINRHATKQQKEKYLPALCSGEKIGC 130
+G ++ + +S+ S + + + R Q+ +L L SG+ +
Sbjct: 51 GLGSRENGEFTAHVGSLCSSLR-SVMTSQGMAAWTVQRLGDAGQRATFLKELTSGK-LAA 108
Query: 131 LAMSEPGSGSDVISMSLKAEKKGDMYVLNGNKFWITNGPDADIAVVYARTNPNADKKQHG 190
+ SE +GSD+ +M + GD V++G+K W T AD VV+
Sbjct: 109 VGFSERQAGSDLSAMRTRVRLDGDTAVVDGHKVWTTAAAYADHLVVFGLQEDG------S 162
Query: 191 ISTFIVEKGTPGFSKGKKLNKLGMRGSNTGELIFENCQVPAENLLGGENKGAYVLMSG-L 249
+ +V TPG + G R + +L + +VPA +L G +L++ L
Sbjct: 163 GAVVVVPADTPGVRVERVPKPSGCRAAGHADLHLDQVRVPAGAVLAGSGASLPMLVAASL 222
Query: 250 DLERLVISAGPVGIMQACCDFAFNYVHERVQFGTRIGEFQLMQGKIADMHVALSASRAYL 309
R ++ G VGI++AC A + R QFG +G+ QL+ G IAD+ A +
Sbjct: 223 AYGRKSVAWGCVGILRACRTAAVAHARTREQFGRPLGDHQLVAGHIADLWTAEQIAARVC 282
Query: 310 YSVAKACDRGSIN-SKECAGVFLVAAENAVKVALEAIQCLGGNGYINDYPTGRYLRDAKL 368
+ D GS VAAE A A A Q L G + R RDAKL
Sbjct: 283 EYASDHWDEGSPEMVPATILAKHVAAERAAAGAATAAQVLASAGAREGHVVERAYRDAKL 342
Query: 369 YEIGAGTSEVRRIVIGRSINAE 390
EI G+SE+ R+++ + A
Sbjct: 343 MEIIEGSSEMCRVMLAQHALAL 364
>3mxl_A Nitrososynthase; flavin monooxygenase, acyl-COA dehydrogenas
oxidoreductase; 3.15A {Micromonospora carbonacea}
Length = 395
Score = 515 bits (1329), Expect = 0.0
Identities = 93/402 (23%), Positives = 156/402 (38%), Gaps = 37/402 (9%)
Query: 6 DTIYDLTEEQNKLRETVASYCKTHITPIAADIDSTNDFKDLRKVWKDFGQLGLLGITVPE 65
D LT + + +A I+ AAD D T F + ++ F +LGL+G TVP
Sbjct: 4 DLRAPLTPAGRTVVDLLAGVIP-RISAEAADRDRTGTFP--VEAFEQFAKLGLMGATVPA 60
Query: 66 EFGGSEMGYLDH-VIAMEELSRSSASVGLSFVAH--SNLCVNQINRHAT---KQQKEKYL 119
E GG + L A+ L+ + AS L++ L + +H T + E+ L
Sbjct: 61 ELGGLGLTRLYDVATALMRLAEADASTALAWHVQLSRGLTLTYEWQHGTPPVRAMAERLL 120
Query: 120 PALCSGEKIGCLAMSEPGSGSDVISMSLKAEKKGDMYVLNGNKFWITNGPDADIAVVYAR 179
A+ GE C A+ + + L ++ G ++L+G K ++ P A V+A+
Sbjct: 121 RAMAEGEAAVCGALKDAPG----VVTELHSDGAGG-WLLSGRKVLVSMAPIATHFFVHAQ 175
Query: 180 TNPNADKKQHGISTFIVEKGTPGFSKGKKLNKLGMRGSNTGELIFENCQVPAENLL--GG 237
D ++ +V + PG + + LGMR S T E++F+ C V A+ LL G
Sbjct: 176 RRD--DDGSVFLAVPVVHRDAPGLTVLDNWDGLGMRASGTLEVVFDRCPVRADELLERGP 233
Query: 238 ENKGAYVLMSGLDLERLVISAGPVGIMQACCDFAFNYVHERVQFGTRIGEFQLMQGKIAD 297
+++G + + + GI QA D A + R + + +A
Sbjct: 234 VGARRDAVLAGQTVSSITMLGIYAGIAQAARDIAVGFCAGRGGEP--RAGARAL---VAG 288
Query: 298 MHVALSASRAYLYSVAKACD------------RGSINSKECAGVFLVAAENAVKVALEAI 345
+ L A R + + D RG + E A V + +
Sbjct: 289 LDTRLYALRTTVGAALTNADAASVDLSGDPDERGRRMMTPFQYAKMTVNELAPAVVDDCL 348
Query: 346 QCLGGNGYINDYPTGRYLRDAKLYEIGAGTSEVRR--IVIGR 385
+GG Y +P R RD + S V + G+
Sbjct: 349 SLVGGLAYTAGHPLSRLYRDVRAGGFMQPYSYVDAVDYLSGQ 390
>2vig_A Short-chain specific acyl-COA dehydrogenase,; fatty acid
metabolism, FAD, polymorphism, flavoprotein,
mitochondrion, disease mutation; HET: FAD COS; 1.9A
{Homo sapiens} PDB: 1jqi_A*
Length = 391
Score = 502 bits (1295), Expect = e-179
Identities = 154/384 (40%), Positives = 228/384 (59%), Gaps = 4/384 (1%)
Query: 9 YDLTEEQNKLRETVASYCKTHITPIAADIDSTNDFKDLRKVWKDFGQLGLLGITVPEEFG 68
+L E L +T + + + PIAA +D + F K G LGLL + VPEE G
Sbjct: 4 VELPETHQMLLQTCRDFAEKELFPIAAQVDKEHLFP--AAQVKKMGGLGLLAMDVPEELG 61
Query: 69 GSEMGYLDHVIAMEELSRSSASVGLSFVAHSNLCVNQINRHATKQQKEKYLPALCSGEKI 128
G+ + YL + IAMEE+SR AS G+ +++L + I + +K+QK+ ++ SG+KI
Sbjct: 62 GAGLDYLAYAIAMEEISRGCASTGVIMSVNNSLYLGPILKFGSKEQKQAWVTPFTSGDKI 121
Query: 129 GCLAMSEPGSGSDVISMSLKAEKKGDMYVLNGNKFWITNGPDADIAVVYARTNPNADKKQ 188
GC A+SEPG+GSD + S A +GD +VLNG K WITN +A AVV+A T+ +
Sbjct: 122 GCFALSEPGNGSDAGAASTTARAEGDSWVLNGTKAWITNAWEASAAVVFASTDR--ALQN 179
Query: 189 HGISTFIVEKGTPGFSKGKKLNKLGMRGSNTGELIFENCQVPAENLLGGENKGAYVLMSG 248
IS F+V TPG + GKK +KLG+RGS+T LIFE+C++P +++LG G + M
Sbjct: 180 KSISAFLVPMPTPGLTLGKKEDKLGIRGSSTANLIFEDCRIPKDSILGEPGMGFKIAMQT 239
Query: 249 LDLERLVISAGPVGIMQACCDFAFNYVHERVQFGTRIGEFQLMQGKIADMHVALSASRAY 308
LD+ R+ I++ +GI Q D A NY R+ FG + + Q++Q K+ADM +AL ++R
Sbjct: 240 LDMGRIGIASQALGIAQTALDCAVNYAENRMAFGAPLTKLQVIQFKLADMALALESARLL 299
Query: 309 LYSVAKACDRGSINSKECAGVFLVAAENAVKVALEAIQCLGGNGYINDYPTGRYLRDAKL 368
+ A D KE A L A+E A ++ +AIQ LGG GY+ + P R+ RDA++
Sbjct: 300 TWRAAMLKDNKKPFIKEAAMAKLAASEAATAISHQAIQILGGMGYVTEMPAERHYRDARI 359
Query: 369 YEIGAGTSEVRRIVIGRSINAEYK 392
EI GTSE++R+VI + Y+
Sbjct: 360 TEIYEGTSEIQRLVIAGHLLRSYR 383
>2d29_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national
project protein structural and functional analyses; HET:
FAD; 1.65A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1
PDB: 1ws9_A 2cx9_A*
Length = 387
Score = 485 bits (1251), Expect = e-172
Identities = 141/381 (37%), Positives = 205/381 (53%), Gaps = 4/381 (1%)
Query: 9 YDLTEEQNKLRETVASYCKTHITPIAADIDSTNDFKDLRKVWKDFGQLGLLGITVPEEFG 68
++ E+ ++ + K + P AA+ D T F + + + G+ G VPE +G
Sbjct: 5 FEEGAEERQVLGPFREFLKAEVAPGAAERDRTGAFP--WDLVRKLAEFGVFGALVPEAYG 62
Query: 69 GSEMGYLDHVIAMEELSRSSASVGLSFVAHSNLCVNQINRHATKQQKEKYLPALCSGEKI 128
G+ + +E ++ ++ L+ +H++L I ++ QKE +LP L SGE +
Sbjct: 63 GAGLSTRLFARMVEAIAYYDGALALTVASHNSLATGHILLAGSEAQKEAFLPKLASGEAL 122
Query: 129 GCLAMSEPGSGSDVISMSLKAEKKGDMYVLNGNKFWITNGPDADIAVVYARTNPNA--DK 186
G ++EPGSGSD ++ KAEK + LNG K +IT G A + VV ART+P ++
Sbjct: 123 GAWGLTEPGSGSDAAALKTKAEKVEGGWRLNGTKQFITQGSVAGVYVVMARTDPPPSPER 182
Query: 187 KQHGISTFIVEKGTPGFSKGKKLNKLGMRGSNTGELIFENCQVPAENLLGGENKGAYVLM 246
K GIS F + G G+K KLG+ S+T +LI E+ VP E LLG KG Y ++
Sbjct: 183 KHQGISAFAFFRPERGLKVGRKEEKLGLTASDTAQLILEDLFVPEEALLGERGKGFYDVL 242
Query: 247 SGLDLERLVISAGPVGIMQACCDFAFNYVHERVQFGTRIGEFQLMQGKIADMHVALSASR 306
LD R+ I+A VG+ QA D+A Y R FG I EF+ + K+A+ L A+R
Sbjct: 243 RVLDGGRIGIAAMAVGLGQAALDYALAYAKGREAFGRPIAEFEGVSFKLAEAATELEAAR 302
Query: 307 AYLYSVAKACDRGSINSKECAGVFLVAAENAVKVALEAIQCLGGNGYINDYPTGRYLRDA 366
A+ D G + E A L A+E AVK EAIQ LGG GY+ DYP RY RDA
Sbjct: 303 LLYLKAAELKDAGRPFTLEAAQAKLFASEAAVKACDEAIQILGGYGYVKDYPVERYWRDA 362
Query: 367 KLYEIGAGTSEVRRIVIGRSI 387
+L IG GTSE+ ++VI R +
Sbjct: 363 RLTRIGEGTSEILKLVIARRL 383
>1ukw_A Acyl-COA dehydrogenase; oxidoreductase, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; HET: FAD; 2.40A {Thermus thermophilus} SCOP:
a.29.3.1 e.6.1.1
Length = 379
Score = 483 bits (1245), Expect = e-171
Identities = 141/379 (37%), Positives = 215/379 (56%), Gaps = 5/379 (1%)
Query: 9 YDLTEEQNKLRETVASYCKTHITPIAADIDSTNDFKDLRKVWKDFGQLGLLGITVPEEFG 68
+ LTEEQ +L+ + K I P+A + D + V + ++GLL +PEE+G
Sbjct: 3 FSLTEEQRQLQALARRFAKEVILPVAQEYDEKEEVP--WPVIEKLHEVGLLNAIIPEEYG 60
Query: 69 GSEMGYLDHVIAMEELSRSSASVGLSFVAHSNLCVNQINRHATKQQKEKYLPALCSGEKI 128
G + LD VI EEL+ + + + S+L + + T++QKE++L L +
Sbjct: 61 GMGLKMLDEVIVGEELAYACMGIY-TIPMASDLGITPVLLAGTEEQKERFLRPLTEKPAL 119
Query: 129 GCLAMSEPGSGSDVISMSLKAEKKGDMYVLNGNKFWITNGPDADIAVVYARTNPNADKKQ 188
A+SEPG+GSD ++ +A ++GD YVLNG K WI+NG +A+ VV+A NP + +
Sbjct: 120 AAFALSEPGNGSDAAALKTRAIRQGDHYVLNGTKMWISNGGEAEWVVVFATVNP--ELRH 177
Query: 189 HGISTFIVEKGTPGFSKGKKLNKLGMRGSNTGELIFENCQVPAENLLGGENKGAYVLMSG 248
G+ +VE+GTPGF K K+G R S T EL+FE+ +VP EN LG E +G + M
Sbjct: 178 KGVVALVVERGTPGFKAIKIHGKMGQRASGTYELVFEDVKVPVENRLGEEGEGFKIAMQT 237
Query: 249 LDLERLVISAGPVGIMQACCDFAFNYVHERVQFGTRIGEFQLMQGKIADMHVALSASRAY 308
L+ R+ ++AG VG+ + D A Y ER FG I FQ +Q K+ DM + + +R Y
Sbjct: 238 LNKTRIPVAAGSVGVARRALDEARKYAKEREAFGEPIANFQAIQFKLVDMLIGIETARMY 297
Query: 309 LYSVAKACDRGSINSKECAGVFLVAAENAVKVALEAIQCLGGNGYINDYPTGRYLRDAKL 368
Y A D+G ++ A A+E A + A +AIQ GG GY+ ++P + LRD KL
Sbjct: 298 TYYAAWLADQGLPHAHASAIAKAYASEIAFEAANQAIQIHGGYGYVREFPVEKLLRDVKL 357
Query: 369 YEIGAGTSEVRRIVIGRSI 387
+I GT+E++R++I R I
Sbjct: 358 NQIYEGTNEIQRLIIARHI 376
>1egd_A Medium chain acyl-COA dehydrogenase; flavoprotein, electron
transfer; HET: FAD; 2.40A {Homo sapiens} SCOP: a.29.3.1
e.6.1.1 PDB: 1egc_A* 1ege_A* 1t9g_A* 2a1t_A* 1udy_A*
3mdd_A* 3mde_A*
Length = 396
Score = 482 bits (1242), Expect = e-171
Identities = 133/385 (34%), Positives = 209/385 (54%), Gaps = 4/385 (1%)
Query: 9 YDLTEEQNKLRETVASYCKTHITPIAADIDSTNDFKDLRKVWKDFGQLGLLGITVPEEFG 68
++ TE+Q + + T + + I P+AA+ D T ++ + + +LGL+ +PE G
Sbjct: 14 FEFTEQQKEFQATARKFAREEIIPVAAEYDKTGEYP--VPLIRRAWELGLMNTHIPENCG 71
Query: 69 GSEMGYLDHVIAMEELSRSSASVGLSFVAHSNLCVNQINRHATKQQKEKYLPALCSGEKI 128
G +G D + EEL+ V + +S L I QQK+KYL + +
Sbjct: 72 GLGLGTFDACLISEELAYGCTGVQTAIEGNS-LGQMPIIIAGNDQQKKKYLGRMTEEPLM 130
Query: 129 GCLAMSEPGSGSDVISMSLKAEKKGDMYVLNGNKFWITNGPDADIAVVYARTNPNADKKQ 188
++EPG+GSDV + KAEKKGD Y++NG K WITNG A+ + AR++P+
Sbjct: 131 CAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKANWYFLLARSDPDPKAPA 190
Query: 189 H-GISTFIVEKGTPGFSKGKKLNKLGMRGSNTGELIFENCQVPAENLLGGENKGAYVLMS 247
+ + FIVE TPG G+K +G R S+T ++FE+ +VP EN+L G+ G V M
Sbjct: 191 NKAFTGFIVEADTPGIQIGRKELNMGQRCSDTRGIVFEDVKVPKENVLIGDGAGFKVAMG 250
Query: 248 GLDLERLVISAGPVGIMQACCDFAFNYVHERVQFGTRIGEFQLMQGKIADMHVALSASRA 307
D ER V++AG VG+ Q D A Y ER FG + E Q + +A+M + + +R
Sbjct: 251 AFDKERPVVAAGAVGLAQRALDEATKYALERKTFGKLLVEHQAISFMLAEMAMKVELARM 310
Query: 308 YLYSVAKACDRGSINSKECAGVFLVAAENAVKVALEAIQCLGGNGYINDYPTGRYLRDAK 367
A D G N+ + A + A ++A +A+Q LGGNG+ +YP + +RDAK
Sbjct: 311 SYQRAAWEVDSGRRNTYYASIAKAFAGDIANQLATDAVQILGGNGFNTEYPVEKLMRDAK 370
Query: 368 LYEIGAGTSEVRRIVIGRSINAEYK 392
+Y+I GTS+++R+++ R +YK
Sbjct: 371 IYQIYGGTSQIQRLIVAREHIDKYK 395
>3pfd_A Acyl-COA dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid; HET:
FDA; 2.10A {Mycobacterium thermoresistibile}
Length = 393
Score = 481 bits (1240), Expect = e-170
Identities = 137/384 (35%), Positives = 207/384 (53%), Gaps = 6/384 (1%)
Query: 5 DDTIYDLTEEQNKLRETVASYCKTHITPIAADIDSTNDFKDLRKVWKDFGQLGLLGITVP 64
++ L EE LRE + + + I P AA++D F + G I VP
Sbjct: 13 SFELFQLPEEHIALREAIRALAEKEIAPYAAEVDEKARFP--EEALAALNSSGFSAIHVP 70
Query: 65 EEFGGSEMGYLDHVIAMEELSRSSASVGLSFVAHSNLCVNQINRHATKQQKEKYLPALCS 124
EE+GG + I +EE++R S L + L + +++ K++ LPA+ S
Sbjct: 71 EEYGGQGADSVATCIVIEEVARVDCSASLIPAVNK-LGTMGLILRGSEELKKQVLPAVAS 129
Query: 125 GEKIGCLAMSEPGSGSDVISMSLKAEKKGDMYVLNGNKFWITNGPDADIAVVYARTNPNA 184
GE + A+SE +GSD SM +A GD ++LNG+K WITNG + V A T+P
Sbjct: 130 GEAMASYALSEREAGSDAASMRTRAVADGDDWILNGSKCWITNGGKSTWYTVMAVTDP-- 187
Query: 185 DKKQHGISTFIVEKGTPGFSKGKKLNKLGMRGSNTGELIFENCQVPAENLLGGENKGAYV 244
DK +GIS F+V K GF+ G K KLG++GS T EL FENC++P + ++G G
Sbjct: 188 DKGANGISAFMVHKDDEGFTVGPKERKLGIKGSPTTELYFENCRIPGDRIIGEPGTGFKT 247
Query: 245 LMSGLDLERLVISAGPVGIMQACCDFAFNYVHERVQFGTRIGEFQLMQGKIADMHVALSA 304
++ LD R I A VGI Q D A Y ER QFG + + Q +Q +ADM + + A
Sbjct: 248 ALATLDHTRPTIGAQAVGIAQGALDAAIAYTKERKQFGRPVSDNQGVQFMLADMAMKIEA 307
Query: 305 SRAYLYSVAKACDRGSIN-SKECAGVFLVAAENAVKVALEAIQCLGGNGYINDYPTGRYL 363
+R +YS A +RG + A A++ A++V +A+Q GG GY D+P R +
Sbjct: 308 ARLMVYSAAARAERGEGDLGFISAASKCFASDVAMEVTTDAVQLFGGYGYTQDFPVERMM 367
Query: 364 RDAKLYEIGAGTSEVRRIVIGRSI 387
RDAK+ +I GT++++R+V+ R++
Sbjct: 368 RDAKITQIYEGTNQIQRVVMSRAL 391
>1buc_A Butyryl-COA dehydrogenase; acyl-COA dehydrogenase short-chain
acyl-COA dehydrogenase, flavoprotein, oxidoreductase;
HET: CAA FAD; 2.50A {Megasphaera elsdenii} SCOP:
a.29.3.1 e.6.1.1
Length = 383
Score = 476 bits (1227), Expect = e-169
Identities = 140/383 (36%), Positives = 221/383 (57%), Gaps = 8/383 (2%)
Query: 9 YDLTEEQNKLRETVASYCKTHITPIAADIDSTNDFKDLRKVWKDFGQLGLLGITVPEEFG 68
++LT+ Q + + + + P + D + +++ + LG+ G E++G
Sbjct: 3 FNLTDIQQDFLKLAHDFGEKKLAPTVTERDHKGIYD--KELIDELLSLGITGAYFEEKYG 60
Query: 69 GS---EMGYLDHVIAMEELSRSSASVGLSFVAHSNLCVNQINRHATKQQKEKYLPALCSG 125
GS L +++A+EEL++ A V ++ A +LC N I + T+ QKEK+L L G
Sbjct: 61 GSGDDGGDVLSYILAVEELAKYDAGVAITLSATVSLCANPIWQFGTEAQKEKFLVPLVEG 120
Query: 126 EKIGCLAMSEPGSGSDVISMSLKAEKKGDM-YVLNGNKFWITNGPDADIAVVYARTNPNA 184
K+G ++EP +G+D A K D Y LNG+K +ITNG ADI +V+A T+
Sbjct: 121 TKLGAFGLTEPNAGTDASGQQTIATKNDDGTYTLNGSKIFITNGGAADIYIVFAMTDK-- 178
Query: 185 DKKQHGISTFIVEKGTPGFSKGKKLNKLGMRGSNTGELIFENCQVPAENLLGGENKGAYV 244
K HGI+ FI+E GTPGF+ GKK +K+G+ S T EL+F++ +VPAEN+LG E KG +
Sbjct: 179 SKGNHGITAFILEDGTPGFTYGKKEDKMGIHTSQTMELVFQDVKVPAENMLGEEGKGFKI 238
Query: 245 LMSGLDLERLVISAGPVGIMQACCDFAFNYVHERVQFGTRIGEFQLMQGKIADMHVALSA 304
M LD R+ ++A +GI +A A Y +RVQFG + +FQ + K+ADM + + A
Sbjct: 239 AMMTLDGGRIGVAAQALGIAEAALADAVEYSKQRVQFGKPLCKFQSISFKLADMKMQIEA 298
Query: 305 SRAYLYSVAKACDRGSINSKECAGVFLVAAENAVKVALEAIQCLGGNGYINDYPTGRYLR 364
+R +Y A G + + A VA++ A++V EA+Q GG GY +YP R++R
Sbjct: 299 ARNLVYKAACKKQEGKPFTVDAAIAKRVASDVAMRVTTEAVQIFGGYGYSEEYPVARHMR 358
Query: 365 DAKLYEIGAGTSEVRRIVIGRSI 387
DAK+ +I GT+EV+ +V G ++
Sbjct: 359 DAKITQIYEGTNEVQLMVTGGAL 381
>2jif_A Short/branched chain specific acyl-COA dehydrogen; mitochondrion,
oxidoreductase, transit peptide, fatty acid metabolism,
FAD, flavoprotein; HET: FAD COS; 2.0A {Homo sapiens}
Length = 404
Score = 476 bits (1227), Expect = e-168
Identities = 136/384 (35%), Positives = 218/384 (56%), Gaps = 5/384 (1%)
Query: 8 IYDLTEEQNKLRETVASYCKTHITPIAADIDSTNDFKDLRKVWKDFGQLGLLGITVPEEF 67
+ T+E+ ++ +V + + I P+ + +D + + + V + Q GL+GI V E+
Sbjct: 26 LQTFTDEEMMIKSSVKKFAQEQIAPLVSTMDENSKME--KSVIQGLFQQGLMGIEVDPEY 83
Query: 68 GGSEMGYLDHVIAMEELSRSSASVGLSFVAHSNLCVNQINRHATKQQKEKYLPALCSGEK 127
GG+ +L V+ +EEL++ ASV + + L I +H T++QK YLP L EK
Sbjct: 84 GGTGASFLSTVLVIEELAKVDASVAVFCEIQNTLINTLIRKHGTEEQKATYLPQLT-TEK 142
Query: 128 IGCLAMSEPGSGSDVISMSLKAEKKGDMYVLNGNKFWITNGPDADIAVVYARTNPNADKK 187
+G +SE G+GSD ++ +A+K+GD YVLNG+K WI++ A + +V A +P
Sbjct: 143 VGSFCLSEAGAGSDSFALKTRADKEGDYYVLNGSKMWISSAEHAGLFLVMANVDP--TIG 200
Query: 188 QHGISTFIVEKGTPGFSKGKKLNKLGMRGSNTGELIFENCQVPAENLLGGENKGAYVLMS 247
GI++F+V++ TPG GK NKLG+R S+T L FEN +VP N+LG G +
Sbjct: 201 YKGITSFLVDRDTPGLHIGKPENKLGLRASSTCPLTFENVKVPEANILGQIGHGYKYAIG 260
Query: 248 GLDLERLVISAGPVGIMQACCDFAFNYVHERVQFGTRIGEFQLMQGKIADMHVALSASRA 307
L+ R+ I+A +G+ Q C D+ Y+ ER+QFG R+ +FQ +Q ++A + L A+R
Sbjct: 261 SLNEGRIGIAAQMLGLAQGCFDYTIPYIKERIQFGKRLFDFQGLQHQVAHVATQLEAARL 320
Query: 308 YLYSVAKACDRGSINSKECAGVFLVAAENAVKVALEAIQCLGGNGYINDYPTGRYLRDAK 367
Y+ A+ + G KE + A+E A + + I+ +GG GY DYP +Y RDAK
Sbjct: 321 LTYNAARLLEAGKPFIKEASMAKYYASEIAGQTTSKCIEWMGGVGYTKDYPVEKYFRDAK 380
Query: 368 LYEIGAGTSEVRRIVIGRSINAEY 391
+ I G S ++ I + I+AEY
Sbjct: 381 IGTIYEGASNIQLNTIAKHIDAEY 404
>3nf4_A Acyl-COA dehydrogenase; seattle structural genomics center for
infectious disease, S FAD, FADH, tuberculosis,
oxidoredu; HET: FAD; 2.35A {Mycobacterium
thermoresistibile}
Length = 387
Score = 475 bits (1224), Expect = e-168
Identities = 126/379 (33%), Positives = 204/379 (53%), Gaps = 7/379 (1%)
Query: 9 YDLTEEQNKLRETVASYCKTHITPIAADIDSTNDFKDLRKVWKDFGQLGLLGITVPEEFG 68
++E +L E + PI + + V++ G GLL + PEE+G
Sbjct: 14 LLPSQEAAELIELTREIADKVLDPIVDRHEKDETYP--EGVFEQLGAAGLLSLPQPEEWG 71
Query: 69 GSEMGYLDHVIAMEELSRSSASVGLSFVAHSNLCVNQINRHATKQQKEKYLPALCSGEKI 128
G Y ++ +EE++ ASV ++ HS L + + T++QK+++LP + SGE+I
Sbjct: 72 GGGQPYEVYLQVLEEIAARWASVAVAVSVHS-LSSHPLLVFGTEEQKKRWLPGMLSGEQI 130
Query: 129 GCLAMSEPGSGSDVISMSLKAEKKGDMYVLNGNKFWITNGPDADIAVVYARTNPNADKKQ 188
G ++SEP +GSD ++ A YV+NG+K WIT+G AD ++ART +
Sbjct: 131 GAYSLSEPQAGSDAAALRCAATPTDGGYVINGSKSWITHGGKADFYTLFART----GEGS 186
Query: 189 HGISTFIVEKGTPGFSKGKKLNKLGMRGSNTGELIFENCQVPAENLLGGENKGAYVLMSG 248
G+S F+V PG S GK K+G+ T ++N ++ A+ +G E +G + S
Sbjct: 187 RGVSCFLVPADQPGLSFGKPEEKMGLHAVPTTSAFYDNARIDADRRIGEEGQGLQIAFSA 246
Query: 249 LDLERLVISAGPVGIMQACCDFAFNYVHERVQFGTRIGEFQLMQGKIADMHVALSASRAY 308
LD RL I+A G+ QA D A Y +ER FG +I + Q + +ADM A++ +RA
Sbjct: 247 LDSGRLGIAAVATGLAQAALDEAVAYANERTAFGRKIIDHQGLGFLLADMAAAVATARAT 306
Query: 309 LYSVAKACDRGSINSKECAGVFLVAAENAVKVALEAIQCLGGNGYINDYPTGRYLRDAKL 368
A+ D+G S++ + L A + A+KV +A+Q GG GY DY RY+R+AK+
Sbjct: 307 YLDAARRRDQGRPYSQQASIAKLTATDAAMKVTTDAVQVFGGVGYTRDYRVERYMREAKI 366
Query: 369 YEIGAGTSEVRRIVIGRSI 387
+I GT++++R+VI R +
Sbjct: 367 MQIFEGTNQIQRLVIARGL 385
>2dvl_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national
project on protein STR and functional analyses; HET:
FAD; 2.50A {Thermus thermophilus}
Length = 372
Score = 473 bits (1219), Expect = e-168
Identities = 149/377 (39%), Positives = 214/377 (56%), Gaps = 9/377 (2%)
Query: 11 LTEEQNKLRETVASYCKTHITPIAADIDSTNDFKDLRKVWKDFGQLGLLGITVPEEFGGS 70
LT+EQ + + V + + P+A + D ++ K +LGLLG+T PEE+GG
Sbjct: 3 LTQEQRLVLDAVRRVAREVLYPLAPEYDRKAEYP--WPQLKALAELGLLGMTTPEEWGGV 60
Query: 71 EMGYLDHVIAMEELSRSSASVGLSFVAHSNLCVNQINRHATKQQKEKYLPALCSGEKIGC 130
+ + +A+EEL+ + SV + S L + R ++ QK +YL L GE IG
Sbjct: 61 GLDSVTWALALEELAAADPSVAVIVSVTSGLPQYMLLRFGSEAQKRRYLVPLARGEWIGA 120
Query: 131 LAMSEPGSGSDVISMSLKAEKKGDMYVLNGNKFWITNGPDADIAVVYARTNPNADKKQHG 190
++EP +GSD S+ +A + +VLNG K WIT+ A + VV ART G
Sbjct: 121 FCLTEPQAGSDAKSLRAEARRVKGGFVLNGVKSWITSAGHAHLYVVMARTE-------KG 173
Query: 191 ISTFIVEKGTPGFSKGKKLNKLGMRGSNTGELIFENCQVPAENLLGGENKGAYVLMSGLD 250
IS F+VEKGTPG S G+ K+G+ ++T E+ E VP ENLLG E +G ++GLD
Sbjct: 174 ISAFLVEKGTPGLSFGRPEEKMGLHAAHTAEVRLEEVFVPEENLLGEEGRGLAYALAGLD 233
Query: 251 LERLVISAGPVGIMQACCDFAFNYVHERVQFGTRIGEFQLMQGKIADMHVALSASRAYLY 310
R+ ++A VGI + + A Y ER QFG ++ E Q + KIADMHV ++A+RA +
Sbjct: 234 SGRVGVAAQAVGIARGAFEIAKAYAEEREQFGKKLKEHQAIAFKIADMHVKIAAARALVL 293
Query: 311 SVAKACDRGSINSKECAGVFLVAAENAVKVALEAIQCLGGNGYINDYPTGRYLRDAKLYE 370
A+ DRG + E + L A+ AV+V EA+Q LGG GY DY RY RDAK+ E
Sbjct: 294 EAARKKDRGERFTLEASAAKLFASAAAVEVTREAVQVLGGYGYHRDYRVERYYRDAKVTE 353
Query: 371 IGAGTSEVRRIVIGRSI 387
I GTSE++R+VI R +
Sbjct: 354 IYEGTSEIQRLVIAREL 370
>2pg0_A Acyl-COA dehydrogenase; GK1316, geobacillus kaustophilus HTA
structural genomics, PSI, protein structure initiative;
HET: FAD; 1.80A {Geobacillus kaustophilus}
Length = 385
Score = 471 bits (1214), Expect = e-167
Identities = 133/377 (35%), Positives = 202/377 (53%), Gaps = 3/377 (0%)
Query: 11 LTEEQNKLRETVASYCKTHITPIAADIDSTNDFKDLRKVWKDFGQLGLLGITVPEEFGGS 70
L EE + R + + P D + R W G+ G L V E++GG
Sbjct: 10 LREEHHMFRAAFRKFLEKEAYPHYNDWEKRGIIP--RSFWAKMGENGFLCPWVDEKYGGL 67
Query: 71 EMGYLDHVIAMEELSRSSASVGLSFVAHSNLCVNQINRHATKQQKEKYLPALCSGEKIGC 130
+ V+ EEL + +S + H+++ I + T++QK+K+LP +GE I
Sbjct: 68 NADFAYSVVINEELEKVGSS-LVGIGLHNDIVTPYIASYGTEEQKQKWLPKCVTGELITA 126
Query: 131 LAMSEPGSGSDVISMSLKAEKKGDMYVLNGNKFWITNGPDADIAVVYARTNPNADKKQHG 190
+AM+EPG+GSD+ ++S A K GD Y++NG K +ITNG AD+ VV +T+P A G
Sbjct: 127 IAMTEPGAGSDLANISTTAVKDGDYYIVNGQKTFITNGIHADLIVVACKTDPQAKPPHRG 186
Query: 191 ISTFIVEKGTPGFSKGKKLNKLGMRGSNTGELIFENCQVPAENLLGGENKGAYVLMSGLD 250
IS +VE+ TPGF++G+KL K+G+ +T EL F++ +VPA NLLG E KG Y LM L
Sbjct: 187 ISLLVVERDTPGFTRGRKLEKVGLHAQDTAELFFQDAKVPAYNLLGEEGKGFYYLMEKLQ 246
Query: 251 LERLVISAGPVGIMQACCDFAFNYVHERVQFGTRIGEFQLMQGKIADMHVALSASRAYLY 310
ERLV++ + YV +R FG R+ EFQ +Q ++A+M ++ R ++
Sbjct: 247 QERLVVAIAAQTAAEVMFSLTKQYVKQRTAFGKRVSEFQTVQFRLAEMATEIALGRTFVD 306
Query: 311 SVAKACDRGSINSKECAGVFLVAAENAVKVALEAIQCLGGNGYINDYPTGRYLRDAKLYE 370
V + G E + E A +VA EA+Q GG GY+ +Y R RD +
Sbjct: 307 RVIEEHMAGKQIVTEVSMAKWWITEMAKRVAAEAMQLHGGYGYMEEYEIARRYRDIPVSA 366
Query: 371 IGAGTSEVRRIVIGRSI 387
I AGT+E+ + +I R +
Sbjct: 367 IYAGTNEMMKTIIARQL 383
>3r7k_A Probable acyl COA dehydrogenase; ssgcid, structural genomics,
seattle structural genomics CEN infectious disease,
oxidoreductase; HET: FDA; 2.50A {Mycobacterium
abscessus}
Length = 403
Score = 469 bits (1209), Expect = e-166
Identities = 115/378 (30%), Positives = 190/378 (50%), Gaps = 6/378 (1%)
Query: 11 LTEEQNKLRETVASYCKTHITPIAADIDSTNDFKDLRKVWKDFGQLGLLGITVPEEFGGS 70
T E+ L + S+ + I P A+ + + R + + ++GLLGI PEE GGS
Sbjct: 29 TTPERRALSQMARSFVEREIAPKLAEWEHVGEIP--RDLHLNAAEVGLLGIGFPEEVGGS 86
Query: 71 EMGYLDHVIAMEELSRSSASVGLSFVAHSN-LCVNQINRHATKQQKEKYLPALCSGEKIG 129
+D + E + + S G+ ++ + + I + + E+Y+ +G+ IG
Sbjct: 87 GGNAIDSALVTEAILAAGGSTGVCAALFTHGIALPHIAANGSDALIERYVRPTLAGKMIG 146
Query: 130 CLAMSEPGSGSDVISMSLKAEKKGDMYVLNGNKFWITNGPDADIAVVYARTNPNADKKQH 189
L ++EPG+GSDV ++ +A ++GD YV+NG K +IT+G AD RT
Sbjct: 147 SLGVTEPGAGSDVANLRTRAVREGDTYVVNGAKTFITSGVRADFVTTAVRTGG---PGYG 203
Query: 190 GISTFIVEKGTPGFSKGKKLNKLGMRGSNTGELIFENCQVPAENLLGGENKGAYVLMSGL 249
G+S +++K +PGF ++L+K+G R S+T EL F + +VPA+NL+G EN G +M
Sbjct: 204 GVSLLVIDKNSPGFEVSRRLDKMGWRCSDTAELSFVDVRVPADNLVGAENSGFLQIMQQF 263
Query: 250 DLERLVISAGPVGIMQACCDFAFNYVHERVQFGTRIGEFQLMQGKIADMHVALSASRAYL 309
ERL I+ D A ++ ER FG + Q+++ K+A+M + + Y
Sbjct: 264 QAERLGIAVQAYATAGRALDLAKSWARERETFGRPLTGRQIIRHKLAEMARQVDVACTYT 323
Query: 310 YSVAKACDRGSINSKECAGVFLVAAENAVKVALEAIQCLGGNGYINDYPTGRYLRDAKLY 369
+V + G E + A V EA+Q GG GY+ + R+ RD ++
Sbjct: 324 RAVMQRWLAGEDVVAEVSMAKNTAVYACDYVVNEAVQIFGGMGYMRESEIERHYRDCRIL 383
Query: 370 EIGAGTSEVRRIVIGRSI 387
IG GT+E+ VI + I
Sbjct: 384 GIGGGTNEIMNEVIAKRI 401
>3p4t_A Putative acyl-COA dehydrogenase; ssgcid, structural genomics,
seattle structural genomics CEN infectious disease,
oxidoreductase; HET: FAO; 1.70A {Mycobacterium
smegmatis} PDB: 3oib_A*
Length = 403
Score = 468 bits (1206), Expect = e-165
Identities = 119/381 (31%), Positives = 189/381 (49%), Gaps = 7/381 (1%)
Query: 9 YDLTEEQNKLRETVASYCKTHITPIAADIDSTNDFKDLRKVWKDFGQLGLLGITVPEEFG 68
T E+ LR+TV ++ + + P A + + + R++ + +LGLLG PE+ G
Sbjct: 24 IWTTAEREALRKTVRAFAEREVLPHAHEWERAGEIP--RELHRKAAELGLLGAGFPEDAG 81
Query: 69 GSEMGYLDHVIAMEELSRSSASVGL-SFVAHSNLCVNQINRHATKQQKEKYLPALCSGEK 127
GS D V+ EE+ + + G+ + + + V + ++ + Y+ GEK
Sbjct: 82 GSGGDGADPVVICEEMHYAGSPGGVYASLFTCGIAVPHMIASGDQRLIDTYVRPTLRGEK 141
Query: 128 IGCLAMSEPGSGSDVISMSLKAEKKGDMYVLNGNKFWITNGPDADIAVVYARTNPNADKK 187
IG LA++EPG GSDV + +A+ GD YV+NG K +IT+G AD V ART
Sbjct: 142 IGALAITEPGGGSDVGHLRTRADLDGDHYVINGAKTYITSGVRADYVVTAARTGG---PG 198
Query: 188 QHGISTFIVEKGTPGFSKGKKLNKLGMRGSNTGELIFENCQVPAENLLGGENKGAYVLMS 247
G+S +V+KGTPGF +KL+K+G R S+T EL + + +VP NL+G EN G + +
Sbjct: 199 AGGVSLIVVDKGTPGFEVTRKLDKMGWRSSDTAELSYTDVRVPVANLVGSENTGFAQIAA 258
Query: 248 GLDLERLVISAGPVGIMQACCDFAFNYVHERVQFGTRIGEFQLMQGKIADMHVALSASRA 307
ER+ ++ Q C D + R FG + Q +Q +A M + +R
Sbjct: 259 AFVAERVGLATQAYAGAQRCLDLTVEWCRNRDTFGRPLISRQAVQNTLAGMARRIDVARV 318
Query: 308 YLYSVAKACDRGSIN-SKECAGVFLVAAENAVKVALEAIQCLGGNGYINDYPTGRYLRDA 366
Y V + G N E A E VA +A+Q GG GY+ + R RD
Sbjct: 319 YTRHVVERQLAGETNLIAEVCFAKNTAVEAGEWVANQAVQLFGGMGYMAESEVERQYRDM 378
Query: 367 KLYEIGAGTSEVRRIVIGRSI 387
++ IG GT+E+ + +++
Sbjct: 379 RILGIGGGTTEILTSLAAKTL 399
>1rx0_A Acyl-COA dehydrogenase family member 8, mitochondrial;
flavoprotein, coenzyme A, oxidoreductase; HET: FAD 2MC;
1.77A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1
Length = 393
Score = 465 bits (1200), Expect = e-164
Identities = 127/383 (33%), Positives = 199/383 (51%), Gaps = 7/383 (1%)
Query: 9 YDLTEEQNKLRETVASYCKTHITPIAADIDSTNDFKDLRKVWKDFGQLGLLGITVPEEFG 68
L EEQ + ++ + + P A+ D F V + QLG G+ + + G
Sbjct: 17 MGLNEEQKEFQKVAFDFAAREMAPNMAEWDQKELFP--VDVMRKAAQLGFGGVYIQTDVG 74
Query: 69 GSEMGYLDHVIAMEELSRSSASVGLSFVAHSNLCVNQINRHATKQQKEKYLPALCSGEKI 128
GS + LD + E L+ S H N+C I+ ++Q+ K+ P LC+ EK
Sbjct: 75 GSGLSRLDTSVIFEALATGCTSTTAYISIH-NMCAWMIDSFGNEEQRHKFCPPLCTMEKF 133
Query: 129 GCLAMSEPGSGSDVISMSLKAEKKGDMYVLNGNKFWITNGPDADIAVVYARTNPNADKKQ 188
++EPGSGSD S+ A+K+GD Y+LNG+K +I+ ++DI VV RT
Sbjct: 134 ASYCLTEPGSGSDAASLLTSAKKQGDHYILNGSKAFISGAGESDIYVVMCRTGG---PGP 190
Query: 189 HGISTFIVEKGTPGFSKGKKLNKLGMRGSNTGELIFENCQVPAENLLGGENKGAYVLMSG 248
GIS +VEKGTPG S GKK K+G T +IFE+C VP N +G E +G + + G
Sbjct: 191 KGISCIVVEKGTPGLSFGKKEKKVGWNSQPTRAVIFEDCAVPVANRIGSEGQGFLIAVRG 250
Query: 249 LDLERLVISAGPVGIMQACCDFAFNYVHERVQFGTRIGEFQLMQGKIADMHVALSASRAY 308
L+ R+ I++ +G A ++++ R QFG + Q +Q +ADM L A+R
Sbjct: 251 LNGGRINIASCSLGAAHASVILTRDHLNVRKQFGEPLASNQYLQFTLADMATRLVAARLM 310
Query: 309 LYSVAKACDRGSIN-SKECAGVFLVAAENAVKVALEAIQCLGGNGYINDYPTGRYLRDAK 367
+ + A A + C+ L A + + +A+Q GG GY+ DY +Y+RD++
Sbjct: 311 VRNAAVALQEERKDAVALCSMAKLFATDECFAICNQALQMHGGYGYLKDYAVQQYVRDSR 370
Query: 368 LYEIGAGTSEVRRIVIGRSINAE 390
+++I G++EV RI+I RS+ E
Sbjct: 371 VHQILEGSNEVMRILISRSLLQE 393
>2z1q_A Acyl-COA dehydrogenase; FAD, structural genomics, NPPSFA, Na
project on protein structural and functional analyses;
HET: FAD; 2.30A {Thermus thermophilus}
Length = 577
Score = 445 bits (1147), Expect = e-154
Identities = 121/397 (30%), Positives = 205/397 (51%), Gaps = 24/397 (6%)
Query: 7 TIYDLTEEQNKLRETVASYCKTHITPIAADIDSTNDFKDLRKVWKDFGQLGLLGITVPEE 66
T D E ++ T ++ + + P+ ++ + + + G+LGLL I VPEE
Sbjct: 24 TPEDFDESVKEIARTTRTFVEREVLPLLERMEHGELELN-VPLMRKAGELGLLAIDVPEE 82
Query: 67 FGGSEMGYLDHVIAMEELSRSSASVGLSFVAHSNLCVNQINRHATKQQKEKYLPALCSGE 126
+GG ++ + + EELS S +++ AH+++ + T++QK KYLP L SGE
Sbjct: 83 YGGLDLPKVISTVVAEELSGS-GGFSVTYGAHTSIGTLPLVYFGTEEQKRKYLPKLASGE 141
Query: 127 KIGCLAMSEPGSGSDVISMSLKA--EKKGDMYVLNGNKFWITNGPDADIAVVYARTNPNA 184
I ++EPGSGSD ++ +A + G Y+LNG K WI+N A + V+A+ +
Sbjct: 142 WIAAYCLTEPGSGSDALAAKTRATLSEDGKHYILNGVKQWISNAGFAHLFTVFAKVDG-- 199
Query: 185 DKKQHGISTFIVEKGTPGFSKGKKLNKLGMRGSNTGELIFENCQVPAENLLGGENKGAYV 244
+ F+VE+ TPG S G + K+G++ S+T ++I E+ +VP EN+LG KG +
Sbjct: 200 ----EHFTAFLVERDTPGLSFGPEEKKMGIKASSTRQVILEDVKVPVENVLGEIGKGHKI 255
Query: 245 LMSGLDLERLVISAGPVGIMQACCDFAFNYVHERVQFGTRIGEFQLMQGKIADMHVALSA 304
+ L++ R + AG VG + + + Y +RVQFG IG F L+Q K+ +M + A
Sbjct: 256 AFNVLNVGRYKLGAGAVGGAKRALELSAQYATQRVQFGRPIGRFGLIQQKLGEMASRIYA 315
Query: 305 SRAYLYSVAKACDRGSIN--------------SKECAGVFLVAAENAVKVALEAIQCLGG 350
+ + +Y D + + E + + ++ +E V E +Q GG
Sbjct: 316 AESAVYRTVGLIDEALLGKKGPEAVMAGIEEYAVEASIIKVLGSEVLDYVVDEGVQIHGG 375
Query: 351 NGYINDYPTGRYLRDAKLYEIGAGTSEVRRIVIGRSI 387
GY +YP R RDA++ I GT+E+ R++I +
Sbjct: 376 YGYSQEYPIERAYRDARINRIFEGTNEINRLLIPGML 412
>3owa_A Acyl-COA dehydrogenase; structural genomics, center for structural
genomics of infec diseases, csgid, alpha-structure,
beta-barrel; HET: MSE FAD 1PE; 1.97A {Bacillus
anthracis}
Length = 597
Score = 444 bits (1144), Expect = e-153
Identities = 118/399 (29%), Positives = 192/399 (48%), Gaps = 29/399 (7%)
Query: 10 DLTEEQNKLRETVASYCKTHITPIAADIDSTNDFKDLRKVWKDFGQLGLLGITVPEEFGG 69
D + E + +T + + P ++ +F ++ K+ G+LGLLG VPEE+GG
Sbjct: 32 DFSSEHKMIAKTTEDFIVNEVLPELEYLEQH-EFDRSVRLLKEAGELGLLGADVPEEYGG 90
Query: 70 SEMGYLDHVIAMEELSRSSASVGLSFVAHSNLCVNQINRHATKQQKEKYLPALCSGEKIG 129
+ + + E+ SR+ ++ AH + I ++QK+KYLP L +GEK+
Sbjct: 91 IGLDKVSSALIAEKFSRA-GGFAITHGAHVGIGSLPIVLFGNEEQKKKYLPLLATGEKLA 149
Query: 130 CLAMSEPGSGSDVISMSLKAE--KKGDMYVLNGNKFWITNGPDADIAVVYARTNPNADKK 187
A++EPGSGSD + A +G YVLNG K WITN AD+ +VYA+ +
Sbjct: 150 AYALTEPGSGSDALGAKTTARLNAEGTHYVLNGEKQWITNSAFADVFIVYAKIDG----- 204
Query: 188 QHGISTFIVEKGTPGFSKGKKLNKLGMRGSNTGELIFENCQVPAENLLGGENKGAYVLMS 247
S FIVEK G S + K+G++ S+T LI E+ VP ENLLG KG + +
Sbjct: 205 -EHFSAFIVEKDYAGVSTSPEEKKMGIKCSSTRTLILEDALVPKENLLGEIGKGHIIAFN 263
Query: 248 GLDLERLVISAGPVGIMQACCDFAFNYVHERVQFGTRIGEFQLMQGKIADMHVALSASRA 307
L++ R + G VG + + + Y ++R QF I F L+Q K+A+M A+ +
Sbjct: 264 ILNIGRYKLGVGTVGSAKRAVEISAQYANQRQQFKQPIARFPLIQEKLANMAAKTYAAES 323
Query: 308 YLYSVAKACDRGSIN-------------------SKECAGVFLVAAENAVKVALEAIQCL 348
+Y + + EC+ + +E E +Q
Sbjct: 324 SVYRTVGLFESRMSTLSEEEVKDGKAVAASIAEYAIECSLNKVFGSEVLDYTVDEGVQIH 383
Query: 349 GGNGYINDYPTGRYLRDAKLYEIGAGTSEVRRIVIGRSI 387
GG G++ +Y R RD+++ I GT+E+ R+++ +
Sbjct: 384 GGYGFMAEYEIERMYRDSRINRIFEGTNEINRLIVPGTF 422
>2c12_A Nitroalkane oxidase; oxidoreductase, flavoenzyme, acyl-COA
dehydrogenase, long cell EDGE, FAD, inhibitor,
flavoprotein; HET: SPM FAD PE4; 2.07A {Fusarium
oxysporum} SCOP: a.29.3.1 e.6.1.1 PDB: 2c0u_A* 2zaf_A*
2reh_A* 3d9g_A* 3d9f_A* 3d9d_A* 3d9e_A* 3fcj_A*
Length = 439
Score = 435 bits (1122), Expect = e-152
Identities = 82/425 (19%), Positives = 166/425 (39%), Gaps = 42/425 (9%)
Query: 9 YDLTEEQNKLRETVASYCKTHITPIAADIDSTND----FKDLRKVWKDFGQLGLLGITVP 64
+ L+ Q + R ++ T +T +A+ + D F+ R +++ + GL+ VP
Sbjct: 4 FKLSPSQLEARRHAQAFANTVLTKASAEYSTQKDQLSRFQATRPFYREAVRHGLIKAQVP 63
Query: 65 EEFGGSEMGYLDHVIAMEELSRSSASVGLSFVAHSNLCVNQINRHATKQQKEKYLPALCS 124
GG+ + I +EEL + ++ VA + L + + + +EK+L S
Sbjct: 64 IPLGGTMESLVHESIILEELFAVEPATSITIVATA-LGLMPVILCDSPSLQEKFLKPFIS 122
Query: 125 GE--KIGCLAMSEPGSGSDVI-----SMSLKAEKKGDMYVLNGNKFWITNG-----PDAD 172
GE + L SEP ++ + + A K G+ +V++G K W +N AD
Sbjct: 123 GEGEPLASLMHSEPNGTANWLQKGGPGLQTTARKVGNEWVISGEKLWPSNSGGWDYKGAD 182
Query: 173 IAVVYARTNPNADKKQ-------HGISTFIVEKGTPG------FSKGKKLNKLGMRGSNT 219
+A V R + + K Q I+ +V + T + + G ++
Sbjct: 183 LACVVCRVSDDPSKPQDPNVDPATQIAVLLVTRETIANNKKDAYQILGEPELAGHITTSG 242
Query: 220 GELIFENCQVPAENLLGGENKG-AYVLMSGLDLERLVISAGPVGIMQACCDFAFNYVHER 278
F VP ENLL ++ + + ++ A +G +A + A +
Sbjct: 243 PHTRFTEFHVPHENLLCTPGLKAQGLVETAFAMSAALVGAMAIGTARAAFEEALVFAKSD 302
Query: 279 VQFGTR-IGEFQLMQGKIADMHVALSASRAYLYSVAKACDRG----SINSKECAGVFLVA 333
+ G++ I E Q + K+ D + L SR ++ + + + +
Sbjct: 303 TRGGSKHIIEHQSVADKLIDCKIRLETSRLLVWKAVTTLEDEALEWKVKLEMAMQTKIYT 362
Query: 334 AENAVKVALEAIQCLGGNGYINDYPTGRYLRDAKLYEIGAGTS------EVRRIVIGRSI 387
+ AV+ ++A++ +G Y D R L + Y + G + +++R++
Sbjct: 363 TDVAVECVIDAMKAVGMKSYAKDMSFPRLLNEVMCYPLFDGGNIGLRRRQMQRVMALEDY 422
Query: 388 NAEYK 392
Sbjct: 423 EPWAA 427
>2uxw_A VERY-long-chain specific acyl-COA dehydrogenase; fatty acid
metabolism, transit peptide, disease mutation, LI
metabolism, coenzyme A dehydrogenase; HET: FAD TH3;
1.45A {Homo sapiens} PDB: 3b96_A*
Length = 607
Score = 437 bits (1127), Expect = e-150
Identities = 125/388 (32%), Positives = 192/388 (49%), Gaps = 14/388 (3%)
Query: 10 DLTEEQNK----LRETVASYCKTHITPIAADIDSTNDFKDLRKVWKDFGQLGLLGITVPE 65
L EEQ + L E V+ + + P D + W+ +LG G+ VP
Sbjct: 45 VLNEEQTQFLKELVEPVSRFFEEVNDPAKNDALEMVE----ETTWQGLKELGAFGLQVPS 100
Query: 66 EFGGSEMGYLDHVIAMEELSRSSASVGLSFVAHSNLCVNQINRHATKQQKEKYLPALCSG 125
E GG + + +E + VG++ AH ++ I TK QKEKYLP L SG
Sbjct: 101 ELGGVGLCNTQYARLVEIVGMHDLGVGITLGAHQSIGFKGILLFGTKAQKEKYLPKLASG 160
Query: 126 EKIGCLAMSEPGSGSDVISMSLKAEKK--GDMYVLNGNKFWITNGPDADIAVVYARTNPN 183
E + ++EP SGSD S+ A G Y LNG+K WI+NG ADI V+A+T
Sbjct: 161 ETVAAFCLTEPSSGSDAASIRTSAVPSPCGKYYTLNGSKLWISNGGLADIFTVFAKTPVT 220
Query: 184 ADKK---QHGISTFIVEKGTPGFSKGKKLNKLGMRGSNTGELIFENCQVPAENLLGGENK 240
+ I+ F+VE+G G + G K+G++ SNT E+ F+ +VP+EN+LG
Sbjct: 221 DPATGAVKEKITAFVVERGFGGITHGPPEKKMGIKASNTAEVFFDGVRVPSENVLGEVGS 280
Query: 241 GAYVLMSGLDLERLVISAGPVGIMQACCDFAFNYVHERVQFGTRIGEFQLMQGKIADMHV 300
G V M L+ R ++A G M+ A ++ R QFG +I F L+Q K+A M +
Sbjct: 281 GFKVAMHILNNGRFGMAAALAGTMRGIIAKAVDHATNRTQFGEKIHNFGLIQEKLARMVM 340
Query: 301 ALSASRAYLYSVAKACDRGSIN-SKECAGVFLVAAENAVKVALEAIQCLGGNGYINDYPT 359
+ + Y V+ D+G+ + E A + +E A KV E IQ +GG G++ +
Sbjct: 341 LQYVTESMAYMVSANMDQGATDFQIEAAISKIFGSEAAWKVTDECIQIMGGMGFMKEPGV 400
Query: 360 GRYLRDAKLYEIGAGTSEVRRIVIGRSI 387
R LRD +++ I GT+++ R+ +
Sbjct: 401 ERVLRDLRIFRIFEGTNDILRLFVALQG 428
>3mkh_A Nitroalkane oxidase; oxidoreductase flavoenzyme, acyl-COA
dehydrogen flavoprotein, oxidoreductase; HET: FAD; 2.00A
{Podospora anserina}
Length = 438
Score = 429 bits (1106), Expect = e-149
Identities = 87/417 (20%), Positives = 153/417 (36%), Gaps = 35/417 (8%)
Query: 9 YDLTEEQNKLRETVASYCKTHITPIAADIDSTNDFKDLRK-----VWKDFGQLGLLGITV 63
+ L+ Q + S + + P LR + G+L +
Sbjct: 5 FHLSASQKGTYQAARSLARNLLMPARQTYLQHPPNSPLRFQSTQPTYAAAVSAGILKGQI 64
Query: 64 PEEFGGSEMGYLDHVIAMEELSRSSASVGLSFVAHSNLCVNQINRHATKQQKEKYLPALC 123
GG+ ++ I +EE S L+ A L + IN A Q ++L
Sbjct: 65 SPAHGGTGGTLIESAILVEECYSVEPSAALTIFATG-LGLTPIN-LAAGPQHAEFLAPFL 122
Query: 124 SGE--KIGCLAMSEPGSGSDVI-----SMSLKAEKKGDMYVLNGNKFWITNGPDAD---- 172
SGE + L SEPG ++ + A +GD +V+NG K W TN D
Sbjct: 123 SGEGSPLASLVFSEPGGVANALEKGAPGFQTTARLEGDEWVINGEKMWATNCAGWDFKGC 182
Query: 173 ----IAVVYARTNPNADKK-QHGISTFIV------EKGTPGFSKGKKLNKLGMRGSNTGE 221
+ A T + ++ + +V G F + + G +
Sbjct: 183 DLACVVCRDATTPLEEGQDPENKVMIILVTRADLDRNGEGSFEVLRHVATPGHTSVSGPH 242
Query: 222 LIFENCQVPAENLLGGENKGAYVLMSGLDLERLVISAGPVGIMQACCDFAFNYVHERVQF 281
+ + N +VP +N+L +GA V D +++ A VG+M+A D A + E +
Sbjct: 243 VRYTNVRVPTKNVLCPAGQGAKVAFGAFDGSAVLVGAMGVGLMRAAFDAALKFAKEDNRG 302
Query: 282 GTR-IGEFQLMQGKIADMHVALSASRAYLYSVAKACDRGSIN----SKECAGVFLVAAEN 336
G + E Q ++ + + A+RA + A A + G + + + +E
Sbjct: 303 GAVPLLERQAFADLLSGVKIQTEAARALTWKAAHAMENGPGDYDARRELALAAKVFCSEA 362
Query: 337 AVKVALEAIQCLGGNGYINDYPTGRYLRDAKLYEIGAGTS-EVRRIVIGRSINAEYK 392
AVK + I +G + Y P L A + I G + +RR + + +
Sbjct: 363 AVKACTDVINAVGISAYDLQRPFSDLLNTAVVLPIFDGGNVGIRRRHLQQLMLKPTY 419
>3ii9_A Glutaryl-COA dehydrogenase; slipchip, microfluidics, screening,
optimization, protein crystallization, structural
genomics; HET: PGE PG4; 1.74A {Burkholderia pseudomallei
1710B} PDB: 3eon_A* 3eom_A* 3gqt_A* 3gnc_A* 3d6b_A
Length = 396
Score = 408 bits (1050), Expect = e-142
Identities = 114/388 (29%), Positives = 197/388 (50%), Gaps = 13/388 (3%)
Query: 2 YKIDDTIYDLTEEQNKLRETVASYCKTHITPIAADIDSTNDFKDLRKVWKDFGQLGLLGI 61
+D L +++ +R+ +Y + + P + ++++ G++GLLG
Sbjct: 13 LLLDQ---QLADDERMVRDAAHAYAQGKLAPRVTEAFRHETTD--AAIFREMGEIGLLGP 67
Query: 62 TVPEEFGGSEMGYLDHVIAMEELSRSSASVGLSFVAHSNLCVNQINRHATKQQKEKYLPA 121
T+PE++GG + Y+ + + E+ R + S+L + I + QKEKYLP
Sbjct: 68 TIPEQYGGPGLDYVSYGLIAREVERVDSGYRSMMSVQSSLVMVPIFEFGSDAQKEKYLPK 127
Query: 122 LCSGEKIGCLAMSEPGSGSDVISMSLKAEKKGDMYVLNGNKFWITNGPDADIAVVYARTN 181
L +GE IGC ++EP GSD SM +A K Y L+G+K WITN P AD+ VV+A+ +
Sbjct: 128 LATGEWIGCFGLTEPNHGSDPGSMVTRARKVPGGYSLSGSKMWITNSPIADVFVVWAKLD 187
Query: 182 PNADKKQHGISTFIVEKGTPGFSKGKKLNKLGMRGSNTGELIFENCQVPAENLLGGEN-- 239
+ + I FI+EKG G S K+G+R S TGE++ + VP EN+L
Sbjct: 188 ---EDGRDEIRGFILEKGCKGLSAPAIHGKVGLRASITGEIVLDEAFVPEENILPHVKGL 244
Query: 240 KGAYVLMSGLDLERLVISAGPVGIMQACCDFAFNYVHERVQFGTRIGEFQLMQGKIADMH 299
+G + L+ R I+ G +G ++C A YV +R QFG + QL+Q K+ADM
Sbjct: 245 RGP---FTCLNSARYGIAWGALGAAESCWHIARQYVLDRKQFGRPLAANQLIQKKLADMQ 301
Query: 300 VALSASRAYLYSVAKACDRGSINSKECAGVFLVAAENAVKVALEAIQCLGGNGYINDYPT 359
++ + + + D G+ + + + + A+ +A A LGGNG +++
Sbjct: 302 TEITLGLQGVLRLGRMKDEGTAAVEITSIMKRNSCGKALDIARLARDMLGGNGISDEFGV 361
Query: 360 GRYLRDAKLYEIGAGTSEVRRIVIGRSI 387
R+L + ++ GT ++ +++GR+
Sbjct: 362 ARHLVNLEVVNTYEGTHDIHALILGRAQ 389
>2ix5_A Acyl-coenzyme A oxidase 4, peroxisomal; FAD, ACX4, flavin,
peroxisome, glyoxysome, fatty acid metabo lipid
metabolism, acyl-COA oxidase; HET: CAA FAD; 2.7A
{Arabidopsis thaliana} PDB: 2ix6_A*
Length = 436
Score = 404 bits (1041), Expect = e-140
Identities = 106/388 (27%), Positives = 179/388 (46%), Gaps = 16/388 (4%)
Query: 2 YKIDDTIYDLTEEQNKLRETVASYCKTHITPIAADIDSTNDFKDLRKVWKDFGQLGLLGI 61
Y +D LT E+ +R+ V + + PI + +F + G +G+ G
Sbjct: 49 YHFND---LLTPEEQAIRKKVRECMEKEVAPIMTEYWEKAEFP--FHITPKLGAMGVAGG 103
Query: 62 TVPEEFGGSEMGYLDHVIAMEELSRSSASVGLSFVAHSNLCVNQINRHATKQQKEKYLPA 121
++ +G + + IA E++R AS + HS+L + I ++ QKEKYLP+
Sbjct: 104 SIKG-YGCPGLSITANAIATAEIARVDASCSTFILVHSSLGMLTIALCGSEAQKEKYLPS 162
Query: 122 LCSGEKIGCLAMSEPGSGSDVISMSLKAEKKGDMYVLNGNKFWITNGPDADIAVVYARTN 181
L + C A++EP +GSD + A K + +NG K WI N AD+ +++AR
Sbjct: 163 LAQLNTVACWALTEPDNGSDASGLGTTATKVEGGWKINGQKRWIGNSTFADLLIIFARNT 222
Query: 182 PNADKKQHGISTFIVEKGTPGFSKGKKLNKLGMRGSNTGELIFENCQVPAENLLGGEN-- 239
+ I+ FIV+K PG K NK+G+R G+++ +N VP E+ L G N
Sbjct: 223 TT-----NQINGFIVKKDAPGLKATKIPNKIGLRMVQNGDILLQNVFVPDEDRLPGVNSF 277
Query: 240 KGAYVLMSGLDLERLVISAGPVGIMQACCDFAFNYVHERVQFGTRIGEFQLMQGKIADMH 299
+ L + R++++ P+GI D Y+ ER QFG + FQL Q K+ M
Sbjct: 278 QDT---SKVLAVSRVMVAWQPIGISMGIYDMCHRYLKERKQFGAPLAAFQLNQQKLVQML 334
Query: 300 VALSASRAYLYSVAKACDRGSINSKECAGVFLVAAENAVKVALEAIQCLGGNGYINDYPT 359
+ A + + K + G + + + + A + A + LGGNG + D+
Sbjct: 335 GNVQAMFLMGWRLCKLYETGQMTPGQASLGKAWISSKARETASLGRELLGGNGILADFLV 394
Query: 360 GRYLRDAKLYEIGAGTSEVRRIVIGRSI 387
+ D + GT ++ +V GR +
Sbjct: 395 AKAFCDLEPIYTYEGTYDINTLVTGREV 422
>2eba_A Putative glutaryl-COA dehydrogenase; thermus thermophilius, FAD,
STRU genomics, NPPSFA; HET: FAD; 2.21A {Thermus
thermophilus}
Length = 385
Score = 393 bits (1012), Expect = e-136
Identities = 109/389 (28%), Positives = 185/389 (47%), Gaps = 17/389 (4%)
Query: 2 YKIDDTIYDLTEEQNKLRETVASYCKTHITPIAADIDSTNDFKDLRKVWKDFGQLGLLGI 61
Y ++D LT E+ ++++ + + P D F + F +LG LG
Sbjct: 5 YALED---LLTPEEKEVQKAARRFLEKEALPHIRDWWEEGVFP--THLIPRFAELGFLGP 59
Query: 62 TVPEEFGGSEMGYLDHVIAMEELSRSSASVGLSFVAHSNLCVNQINRHATKQQKEKYLPA 121
T+P E+GG+ + + + EL R + + S+L + I + +++QK ++LP
Sbjct: 60 TLPPEYGGAGVSSAAYGLICYELERVDSGLRSFVSVQSSLVMYPIYAYGSEEQKREFLPK 119
Query: 122 LCSGEKIGCLAMSEPGSGSDVI-SMSLKAEKKGDMYVLNGNKFWITNGPDADIAVVYART 180
L GE +GC ++EP GSD +M +A ++GD +VLNG K WITNG A +AV++A+
Sbjct: 120 LARGEMVGCFGLTEPDGGSDPYGNMKTRARREGDTWVLNGTKMWITNGNLAHLAVIWAKD 179
Query: 181 NPNADKKQHGISTFIVEKGTPGFSKGKKLNKLGMRGSNTGELIFENCQVPAENLLGGEN- 239
+ F+V TPGF + K+ +R S T EL+ E +VP L
Sbjct: 180 EGG------EVLGFLVPTDTPGFQAREVKRKMSLRASVTSELVLEEVRVPESLRLPKALG 233
Query: 240 -KGAYVLMSGLDLERLVISAGPVGIMQACCDFAFNYVHERVQFGTRIGEFQLMQGKIADM 298
K +S L R I+ G +G ++A + A + R FG + + QL+Q K+A+M
Sbjct: 234 LKAP---LSCLTQARFGIAWGAMGALEAVYEEAVAFAKSRSTFGEPLAKKQLVQAKLAEM 290
Query: 299 HVALSASRAYLYSVAKACDRGSINSKECAGVFLVAAENAVKVALEAIQCLGGNGYINDYP 358
+ + +A+ D G + + + A++ A A LGG+G +Y
Sbjct: 291 LAWHTEGLLLAWRLARLKDEGKLTPAQVSLAKRQNVWKALQAARMARDILGGSGITLEYH 350
Query: 359 TGRYLRDAKLYEIGAGTSEVRRIVIGRSI 387
R++ + + GT +V +V+GR I
Sbjct: 351 AIRHMLNLETVYTYEGTHDVHTLVLGREI 379
>3swo_A Glutaryl-COA dehydrogenase; ssgcid, glutaryl-COA dehdrogenase,
mycobacerium smegmatis, S genomics; HET: FDA; 1.45A
{Mycobacterium smegmatis}
Length = 399
Score = 391 bits (1007), Expect = e-135
Identities = 104/388 (26%), Positives = 181/388 (46%), Gaps = 18/388 (4%)
Query: 2 YKIDDTIYDLTEEQNKLRETVASYCKTHITPIAADIDSTNDFKDLRKVWKDFGQLGLLGI 61
+ D L +++ + TV + T + P + ++ K+FG LG+LG+
Sbjct: 20 FDTDR---LLDQDERDIAATVRQFVDTRLKPNVEGWFESATLP--SELAKEFGNLGVLGM 74
Query: 62 TVPEEFGGSEMGYLDHVIAMEELSRSSASVGLSFVAHSNLCVNQINRHATKQQKEKYLPA 121
+ + +G + + + +A EL + +L + I R+ +++QK ++LP
Sbjct: 75 HL-QGYGCAGTNAVSYGLACMELEAGDSGFRSFVSVQGSLSMFSIYRYGSEEQKNEWLPR 133
Query: 122 LCSGEKIGCLAMSEPGSGSDVISMSLKAEKKGDMYVLNGNKFWITNGPDADIAVVYARTN 181
L +G+ IGC ++EP GS+ M +A + G ++LNG K WITNG AD+A V+A+T+
Sbjct: 134 LAAGDAIGCFGLTEPDFGSNPAGMRTRARRDGSDWILNGTKMWITNGNLADVATVWAQTD 193
Query: 182 PNADKKQHGISTFIVEKGTPGFSKGKKLNKLGMRGSNTGELIFENCQVPAENLLGGEN-- 239
GI F+V TPGF+ + KL +R S T EL+ +N ++PA L
Sbjct: 194 D-------GIRGFLVPTDTPGFTANEIHRKLSLRASVTSELVLDNVRLPASAQLPLAEGL 246
Query: 240 KGAYVLMSGLDLERLVISAGPVGIMQACCDFAFNYVHERVQFGTRIGEFQLMQGKIADMH 299
+S L+ R I G +G + + Y R F + +QL Q K+A+M
Sbjct: 247 SAP---LSCLNEARFGIVFGALGAARDSLETTIAYTQSREVFDKPLSNYQLTQEKLANMT 303
Query: 300 VALSASRAYLYSVAKACDRGSINSKECAGVFLVAAENAVKVALEAIQCLGGNGYINDYPT 359
V L + + D + ++ + L A+ +A E LGG+G +Y
Sbjct: 304 VELGKGMLLAIHLGRIKDAEGVRPEQISLGKLNNVREAIAIARECRTLLGGSGITLEYSP 363
Query: 360 GRYLRDAKLYEIGAGTSEVRRIVIGRSI 387
R+ + + GTSE+ + IG+++
Sbjct: 364 LRHANNLESVLTYEGTSEMHLLSIGKAL 391
>3sf6_A Glutaryl-COA dehydrogenase; ssgcid, NIH, niaid, SBRI, UW, emerald
biostructures, structu genomics; HET: FDA; 1.70A
{Mycobacterium smegmatis}
Length = 403
Score = 388 bits (999), Expect = e-134
Identities = 114/388 (29%), Positives = 191/388 (49%), Gaps = 17/388 (4%)
Query: 2 YKIDDTIYDLTEEQNKLRETVASYCKTHITPIAADIDSTNDFKDLRKVWKDFGQLGLLGI 61
I+ L+ E+ ++R+TV S + I P A + R++ + G+LGLLG+
Sbjct: 24 IGINA---VLSAEEREIRDTVRSVVQRRIKPHIASWYEDGELPA-RELAVELGELGLLGM 79
Query: 62 TVPEEFGGSEMGYLDHVIAMEELSRSSASVGLSFVAHSNLCVNQINRHATKQQKEKYLPA 121
+ + +G + M + + +A EL + + +L + I+ + +QK+++LP
Sbjct: 80 HL-KGYGCAGMSAVAYGLACLELEAGDSGIRSLVSVQGSLAMYAIHAFGSDEQKDQWLPD 138
Query: 122 LCSGEKIGCLAMSEPGSGSDVISMSLKAEKKGDMYVLNGNKFWITNGPDADIAVVYARTN 181
+ SG +IGC ++EP GSD M +A + GD ++L G K WITNG AD+AVV+ART+
Sbjct: 139 MASGHRIGCFGLTEPDHGSDPAGMRTRATRSGDDWILTGTKMWITNGSVADVAVVWARTD 198
Query: 182 PNADKKQHGISTFIVEKGTPGFSKGKKLNKLGMRGSNTGELIFENCQVPAENLLGGEN-- 239
GI F+V TPGF+ +K+ +R S T EL+ + ++P L G
Sbjct: 199 -------EGIRGFVVPTDTPGFTANTIKSKMSLRASVTSELVLDGVRLPDSARLPGATSL 251
Query: 240 KGAYVLMSGLDLERLVISAGPVGIMQACCDFAFNYVHERVQFGTRIGEFQLMQGKIADMH 299
+ L+ R I G +G + C + A Y R QF IG FQL Q K+ADM
Sbjct: 252 GAP---LRCLNEARFGIVFGALGAARDCLETALAYACSREQFDRPIGGFQLTQQKLADMT 308
Query: 300 VALSASRAYLYSVAKACDRGSINSKECAGVFLVAAENAVKVALEAIQCLGGNGYINDYPT 359
+ + + D G + ++ + L A+++A A LG +G +YP
Sbjct: 309 LEYGKGFLLALHLGRQKDAGELAPEQVSLGKLNNVREAIEIARTARTVLGASGITGEYPV 368
Query: 360 GRYLRDAKLYEIGAGTSEVRRIVIGRSI 387
R+ + + GTSE+ ++IG+++
Sbjct: 369 MRHANNLESVLTYEGTSEMHTLIIGQAL 396
>1siq_A GCD, glutaryl-COA dehydrogenase; acyl-COA dehydrogenase,
decarboxylation, flavin protein, oxidoreductase; HET:
FAD; 2.10A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB:
2r0n_A* 1sir_A* 2r0m_A*
Length = 392
Score = 370 bits (952), Expect = e-127
Identities = 114/393 (29%), Positives = 195/393 (49%), Gaps = 25/393 (6%)
Query: 2 YKIDDTIYDLTEEQNKLRETVASYCKTHITPIAADIDSTNDFKDLRKVWKDFGQLGLLGI 61
+++ LT ++ +R+T +YC+ + P + F R++ + G+LG+LG
Sbjct: 8 LVLEE---QLTTDEILIRDTFRTYCQERLMPRILLANRNEVFH--REIISEMGELGVLGP 62
Query: 62 TVPEEFGGSEMGYLDHVIAMEELSRSSASVGLSFVAHSNLCVNQINRHATKQQKEKYLPA 121
T+ + +G + + + + + EL R + + S+L ++ I + +++Q++KYLP
Sbjct: 63 TI-KGYGCAGVSSVAYGLLARELERVDSGYRSAMSVQSSLVMHPIYAYGSEEQRQKYLPQ 121
Query: 122 LCSGEKIGCLAMSEPGSGSDVISMSLKAEKKGDM--YVLNGNKFWITNGPDADIAVVYAR 179
L GE +GC ++EP SGSD SM +A Y LNG K WITN P AD+ VV+AR
Sbjct: 122 LAKGELLGCFGLTEPNSGSDPSSMETRAHYNSSNKSYTLNGTKTWITNSPMADLFVVWAR 181
Query: 180 TNPNADKKQHGISTFIVEKGTPGFSKGKKLNKLGMRGSNTGELIFENCQVPAENLLGGEN 239
I F++EKG G S + K +R S TG +I + +VP EN+L G +
Sbjct: 182 CEDG------CIRGFLLEKGMRGLSAPRIQGKFSLRASATGMIIMDGVEVPEENVLPGAS 235
Query: 240 --KGAYVLMSGLDLERLVISAGPVGIMQACCDFAFNYVHERVQFGTRIGEFQLMQGKIAD 297
G L+ R I+ G +G + C A Y +R+QFG + QL+Q K+AD
Sbjct: 236 SLGGP---FGCLNNARYGIAWGVLGASEFCLHTARQYALDRMQFGVPLARNQLIQKKLAD 292
Query: 298 MHVALSASRAYLYSVAKACDRGSINSKECAGVFLVAAENAVKVALEAIQCLGGNGYINDY 357
M ++ + + D+ + + + A+ +A +A LGGNG ++Y
Sbjct: 293 MLTEITLGLHACLQLGRLKDQDKAAPEMVSLLKRNNCGKALDIARQARDMLGGNGISDEY 352
Query: 358 PTGRYLRDAK---LYEIGAGTSEVRRIVIGRSI 387
R+ + + YE GT ++ +++GR+I
Sbjct: 353 HVIRHAMNLEAVNTYE---GTHDIHALILGRAI 382
>2ddh_A Acyl-COA oxidase; beta barrel, alpha UP-DOWN bundle,
oxidoreductase; HET: FAD HXD; 2.07A {Rattus norvegicus}
SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 1is2_A*
Length = 661
Score = 246 bits (630), Expect = 8e-76
Identities = 69/367 (18%), Positives = 119/367 (32%), Gaps = 47/367 (12%)
Query: 71 EMGYLDHVIAMEELSRSSASVGLSFVAHSNLCVNQINRHATKQQKEKYLPALCSGEKIGC 130
E G D M + H + + + AT +Q+E++ + E G
Sbjct: 76 EYGISDPEEIMWFKNSVHRGHPEPLDLHLGMFLPTLLHQATAEQQERFFMPAWNLEITGT 135
Query: 131 LAMSEPGSGSDVISMSLKA--EKKGDMYVLNG-----NKFWITN-GPDADIAVVYARTNP 182
A +E G G+ + + A + K ++LN K+W G ++ A+V A+
Sbjct: 136 YAQTEMGHGTHLRGLETTATYDPKTQEFILNSPTVTSIKWWPGGLGKTSNHAIVLAQLIT 195
Query: 183 NADKKQHGISTFIV-------EKGTPGFSKGKKLNKLGMRGSNTGELIFENCQVPAENLL 235
+ +G+ F+V K PG + G K G + G L +N ++P EN+L
Sbjct: 196 --QGECYGLHAFVVPIREIGTHKPLPGITVGDIGPKFGYEEMDNGYLKMDNYRIPRENML 253
Query: 236 GGENK----GAYVL-------MSGLDLERLVISAGPVGIMQACCDFAFNYVHERVQFG-- 282
+ G YV + R + + C A Y R Q
Sbjct: 254 MKYAQVKPDGTYVKPLSNKLTYGTMVFVRSFLVGNAAQSLSKACTIAIRYSAVRRQSEIK 313
Query: 283 -----TRIGEFQLMQGKIADMHVALSASRAYLYSVAKACDRGSINSKE------------ 325
+I +FQ Q K+ + A + + R + + +
Sbjct: 314 QSEPEPQILDFQTQQYKLFPLLATAYAFHFVGRYMKETYLRINESIGQGDLSELPELHAL 373
Query: 326 CAGVFLVAAENAVKVALEAIQCLGGNGYINDYPTGRYLRDAKLYEIGAGTSEVRRIVIGR 385
AG+ A E GG+GY + G + V + R
Sbjct: 374 TAGLKAFTTWTANAGIEECRMACGGHGYSHSSGIPNIYVTFTPACTFEGENTVMMLQTAR 433
Query: 386 SINAEYK 392
+ Y
Sbjct: 434 FLMKIYD 440
>1w07_A Acyl-COA oxidase; oxidoreductase, peroxisomal beta-oxidation, FAD
cofactor; HET: FAD; 2.0A {Arabidopsis thaliana} SCOP:
a.29.3.2 a.29.3.2 e.6.1.2 PDB: 2fon_A*
Length = 659
Score = 227 bits (579), Expect = 2e-68
Identities = 69/356 (19%), Positives = 121/356 (33%), Gaps = 51/356 (14%)
Query: 86 RSSASVGLSFVAHSNLCVNQINRHATKQQKEKYLPALCSGEKIGCLAMSEPGSGSDVISM 145
R H + V I T++Q++K+L + IGC A +E G GS+V +
Sbjct: 90 RHFIDQPAYVDLHWGMFVPAIKGQGTEEQQKKWLSLANKMQIIGCYAQTELGHGSNVQGL 149
Query: 146 SLKAE--KKGDMYVLNGNKFWITN------GPDADIAVVYARTNPNADKKQHGISTFIVE 197
A K D +V++ + G + AVVYAR + K +GI FIV+
Sbjct: 150 ETTATLDPKTDEFVIHTPTQTASKWWPGGLGKVSTHAVVYARLIT--NGKDYGIHGFIVQ 207
Query: 198 -------KGTPGFSKGKKLNKLG---MRGSNTGELIFENCQVPAENLLGGENK----GAY 243
P + G K+G + G L+F++ ++P + +L +K G Y
Sbjct: 208 LRSLEDHSPLPNITVGDIGTKMGNGAYNSMDNGFLMFDHVRIPRDQMLMRLSKVTREGEY 267
Query: 244 V--------LMSGLDLERLVISAGPVGIMQACCDFAFNYVHERVQFGTR-------IGEF 288
V + + R I A + A Y R QFG + ++
Sbjct: 268 VPSDVPKQLVYGTMVYVRQTIVADASNALSRAVCIATRYSAVRRQFGAHNGGIETQVIDY 327
Query: 289 QLMQGKIADMHVALSASRAYLYSVAKACDRGSINSKE------------CAGVFLVAAEN 336
+ Q ++ + + A R + + AG+ +
Sbjct: 328 KTQQNRLFPLLASAYAFRFVGEWLKWLYTDVTERLAASDFATLPEAHACTAGLKSLTTTA 387
Query: 337 AVKVALEAIQCLGGNGYINDYPTGRYLRDAKLYEIGAGTSEVRRIVIGRSINAEYK 392
E + GG+GY+ G + V ++ + R +
Sbjct: 388 TADGIEECRKLCGGHGYLWCSGLPELFAVYVPACTYEGDNVVLQLQVARFLMKTVA 443
>2wbi_A Acyl-COA dehydrogenase family member 11; human, phosphoprotein,
oxidoreducta; HET: FAD; 2.80A {Homo sapiens}
Length = 428
Score = 195 bits (499), Expect = 9e-59
Identities = 92/426 (21%), Positives = 158/426 (37%), Gaps = 67/426 (15%)
Query: 9 YDLTEEQNKLRETVASYCKTHITPIAADIDSTNDFKDLRKVWKDFGQL-----------G 57
+ T + ++ V + K HI P ++ + + G
Sbjct: 21 FVQTRKGQEVLIKVKHFMKQHILPAEKEVTEFYVQNENSVDKWGKPLVIDKLKEMAKVEG 80
Query: 58 LLGITVPEEFGGSEMGYLDHVIAMEELSRSSASVGLSFVAHSNLCVN----------QIN 107
L + +P G + ++D+ + EE G F A N ++
Sbjct: 81 LWNLFLPAVSG---LSHVDYALIAEET-------GKCFFAP--DVFNCQAPDTGNMEVLH 128
Query: 108 RHATKQQKEKYLPALCSGEKIGCLAMSEPG-SGSDVISMSLKAEKKGDMYVLNGNKFWIT 166
+ +++QK+++L L G C M+EP + SD ++ ++ D YV+NG K+W +
Sbjct: 129 LYGSEEQKKQWLEPLLQGNITSCFCMTEPDVASSDATNIECSIQRDEDSYVINGKKWWSS 188
Query: 167 N--GPDADIAVVYARTNPNADKKQHGISTFIVEKGTPGFSKGKKLNKLGMRGSNTG---E 221
P IA+V RT + + S +V TPG + L+ G + G E
Sbjct: 189 GAGNPKCKIAIVLGRTQNTSLSRHKQHSMILVPMNTPGVKIIRPLSVFGYTDNFHGGHFE 248
Query: 222 LIFENCQVPAENLLGGENKGAYVLMSGLDLE----RLVISAGP---------VGIMQACC 268
+ F +VPA NL+ GE +G E RL GP VG+ +
Sbjct: 249 IHFNQVRVPATNLILGEGRG---------FEISQGRL----GPGRIHHCMRTVGLAERAL 295
Query: 269 DFAFNYVHERVQFGTRIGEFQLMQGKIADMHVALSASRAYLYSVAKACDR--GSINSKEC 326
+R+ F ++ +++ IA+ +A+ R A + D + KE
Sbjct: 296 QIMCERATQRIAFKKKLYAHEVVAHWIAESRIAIEKIRLLTLKAAHSMDTLGSAGAKKEI 355
Query: 327 AGVFLVAAENAVKVALEAIQCLGGNGYINDYPTGRYLRDAKLYEIGAGTSEVRRIVIGRS 386
A + + A K+ AIQ GG G DYP ++ + G EV I
Sbjct: 356 AMIKVAAPRAVSKIVDWAIQVCGGAGVSQDYPLANMYAITRVLRLADGPDEVHLSAIATM 415
Query: 387 INAEYK 392
+
Sbjct: 416 ELRDQA 421
>2jbr_A P-hydroxyphenylacetate hydroxylase C2 oxygenase C; flavoenzyme
hydroxylase, oxidoreductase; 2.3A {Acinetobacter
baumannii} PDB: 2jbs_A* 2jbt_A*
Length = 422
Score = 195 bits (498), Expect = 1e-58
Identities = 64/382 (16%), Positives = 126/382 (32%), Gaps = 44/382 (11%)
Query: 30 ITPIAADIDSTNDFKDLRKVWKDFGQLGLLGITVPEEFGGSEMGYLDHVIAMEELSRSSA 89
I A + D + K ++GL P+ +GG EM D + L+ + A
Sbjct: 51 IAKNAESAEQLRRVPD--ENIKLLKEIGLHRAFQPKVYGGLEMSLPDFANCIVTLAGACA 108
Query: 90 SVGLSFVAHSNLCVNQINRHATKQQKEKYLPALCSGEKIGCLAMSEPGSGSDVISMSLKA 149
+F +QI + + Q E +L + S I+ K
Sbjct: 109 GTAWAFSLL-CTHSHQIAMFSKQLQDEIWLKD-------------PDATASSSIAPFGKV 154
Query: 150 EKKGDMYVLNGNKFWITNGPDADIAVVYARTNPNADKKQHGISTFIVEKGTPGFSKGKKL 209
E+ +LNG+ W + A+ A+V K S ++ + +
Sbjct: 155 EEVEGGIILNGDYGWSSGCDHAEYAIVGFNRFDADGNK--IYSFGVIPR--SDYEIVDNW 210
Query: 210 NKLGMRGSNTGELIFENCQVPAENLLGGEN--KGAYVLMSGLDLERL-----------VI 256
++ S + L N +P + ++ +G ++
Sbjct: 211 YAQAIKSSGSKMLKLVNVFIPEYRISKAKDMMEGKSAGFGLYPDSKIFYTPYRPYFASGF 270
Query: 257 SAGPVGIMQACCDFAFNYVHERVQ--FGTRIGEFQLMQGKIADMHVALSASRAYLYSVAK 314
SA +GI + + RV+ G +G +IA+ ++A+RA L +
Sbjct: 271 SAVSLGIAERMIEAFKEKQRNRVRAYTGANVGLATPALMRIAESTHQVAAARALLEKTWE 330
Query: 315 ACDRGSINSKE--------CAGVFLVAAENAVKVALEAIQCLGGNGYINDYPTGRYLRDA 366
+N + A + ++ + G ++++ R RDA
Sbjct: 331 DHRIHGLNHQYPNKETLAFWRTNQAYAVKMCIEAVDRLMAAAGATSFMDNSELQRLFRDA 390
Query: 367 KLYEIGAGTS-EVRRIVIGRSI 387
+ A T +V ++GR +
Sbjct: 391 HMTGAHAYTDYDVCAQILGREL 412
>3djl_A Protein AIDB; alpha helix, beta-barrel, FAD, flavoprotein,
oxidoreductase; HET: FAD; 1.70A {Escherichia coli} PDB:
3u33_A*
Length = 541
Score = 183 bits (467), Expect = 5e-53
Identities = 76/360 (21%), Positives = 145/360 (40%), Gaps = 41/360 (11%)
Query: 43 FKDLRKVWKDFGQLGLLGITVPEEFGGSEMGYLDHVIAMEELSRSSA----SVGLSFVAH 98
+ L + + + E+ ++ ++ A + ++F A
Sbjct: 88 WHLL---MQALCTNRVHNLAWEEDARS--GAFVARAARFMLHAQVEAGSLCPITMTFAAT 142
Query: 99 SNL---CVNQINRHATKQQKEKYLPALCSGEK----IGCLAMSEPGSGSDVISMSLKAEK 151
L T ++Y L G + + + M+E GSDV+S + +AE+
Sbjct: 143 PLLLQMLPAPFQDWTTPLLSDRYDSHLLPGGQKRGLLIGMGMTEKQGGSDVMSNTTRAER 202
Query: 152 KGD-MYVLNGNKFWITNGPDADIAVVYARTNPNADKKQHGISTFIVEKGTP-----GFSK 205
D Y L G+K++ + P +D +V A+T G+S F V + P
Sbjct: 203 LEDGSYRLVGHKWFFSV-PQSDAHLVLAQT-------AGGLSCFFVPRFLPDGQRNAIRL 254
Query: 206 GKKLNKLGMRGSNTGELIFENCQVPAENLLGGENKGAYVLMSGLDLERLVISAGPVGIMQ 265
+ +KLG R + + E+ F++ LLG E +G +++ + R + G +M+
Sbjct: 255 ERLKDKLGNRSNASCEVEFQDAI--GW-LLGLEGEGIRLILKMGGMTRFDCALGSHAMMR 311
Query: 266 ACCDFAFNYVHERVQFGTRIGEFQLMQGKIADMHVALSASRAYLYSVAKACDRGSINSKE 325
A + H+R FG + + LM+ ++ M + L A L+ +A+A DR + ++KE
Sbjct: 312 RAFSLAIYHAHQRHVFGNPLIQQPLMRHVLSRMALQLEGQTALLFRLARAWDRRA-DAKE 370
Query: 326 CAGV-FLVA------AENAVKVALEAIQCLGGNGYINDYPTGRYLRDAKLYEIGAGTSEV 378
+ + EA++ LGG GY + R R+ + I G+ +
Sbjct: 371 ALWARLFTPAAKFVICKRGMPFVAEAMEVLGGIGYCEESELPRLYREMPVNSIWEGSGNI 430
>2rfq_A 3-HSA hydroxylase, oxygenase; rhodococcus SP. RHA1, structural
genomics protein structure initiative, midwest center
for structural genomics, MCSG; HET: 1PS; 1.65A
{Rhodococcus SP} PDB: 3aff_A 3afe_A
Length = 394
Score = 149 bits (378), Expect = 2e-41
Identities = 56/356 (15%), Positives = 110/356 (30%), Gaps = 43/356 (12%)
Query: 34 AADIDSTNDFKDLRKVWKDFGQLGLLGITVPEEFGGSEMGYLDHVIAMEELSRSSASVGL 93
A + + D K + G + PE++GG + + A+ +++ + S G
Sbjct: 27 AQETEDLRRIPD--DSMKALQETGFFRLLQPEQWGGYQADPVLFYSAVRKIASACGSTGW 84
Query: 94 SFVAHSNLCVNQINRHATKQQKEKYLPALCSGEKIGCLAMSEPGSGSDVISMSLKAEKKG 153
+ + + + Q++ + S + +
Sbjct: 85 VSSIIG-VHNWHLALFSQQAQEDVW-------------GNDTDVRISSSYAPMGAGQVVD 130
Query: 154 DMYVLNGNKFWITNGPDADIAVVYARTNPNADKKQHGISTFIVEKGTPGFSKGKKLNKLG 213
Y +NG W + A AV+ D + +F++ + + N +G
Sbjct: 131 GGYTVNGAWAWSSGCDHASWAVLGGPVIK--DGRPVDFVSFLIPR--EDYRIDDVWNVVG 186
Query: 214 MRGSNTGELIFENCQVPAENLLGGENKGAYVLMSGLDLER------------LVISAGPV 261
+RG+ + ++ E+ VP +L + ISA V
Sbjct: 187 LRGTGSNTVVVEDVFVPTHRVLSFKAMSNLTAPGLERNTAPVYKMPWGTIHPTTISAPIV 246
Query: 262 GIMQACCDFAFNYVHERVQ---FGTRIGEFQLMQGKIADMHVALSASRAYLYSVA----K 314
G+ D + +RV+ G + + + +IA+ + A+ L
Sbjct: 247 GMAYGAYDAHVEHQGKRVRAAFAGEKAKDDPFAKVRIAEASSDIDAAWRQLSGNVADEYA 306
Query: 315 ACDRGSINSKECAGVFLVAAENAVKVALEAIQCL----GGNGYINDYPTGRYLRDA 366
G E A A+ +I L G N P R+ RDA
Sbjct: 307 LLVAGEEVPFELRLRARRDQVRATGRAISSIDKLFESSGATALANGTPLQRFWRDA 362
>3hwc_A Chlorophenol-4-monooxygenase component 2; beta barrel, helix
bundle, oxidoreductase; 2.50A {Burkholderia cepacia}
Length = 515
Score = 144 bits (363), Expect = 1e-38
Identities = 47/304 (15%), Positives = 87/304 (28%), Gaps = 38/304 (12%)
Query: 113 QQKEKYLPALCSGEKIGCLAMSEP-----GSGSDVISMSLKA-EKKGDMYVLNGNKFWIT 166
Q +L L + L +P + S +L+ EK D ++NG K T
Sbjct: 133 QNIHNFLKLLREKDLNCPLNFVDPQTDRSSDAAQARSPNLRIVEKTDDGIIVNGVKAVGT 192
Query: 167 NGPDADIAVVYARTNPNADKKQHGISTFIVEKGTPGFS---------KGKKLNKLGMRG- 216
D + P + + + TPG + + L +G
Sbjct: 193 GIAFGDYMHIGCLYRPGIPGE--QVIFAAIPTNTPGVTVFCRESTVKNDPAEHPLASQGD 250
Query: 217 SNTGELIFENCQVPAEN--LLGGENKGAYVLMSGLDLERLVISAGPVGIMQACCDFAFNY 274
+F+N +P E +G D I V + A
Sbjct: 251 ELDSTTVFDNVFIPWEQVFHIGNPEHAKLYPQRIFDWVHYHILIRQVLRAELIVGLA--- 307
Query: 275 VHERVQFGTRIGEFQLMQGKIADMHVALSASRAYLYSVAKACDRG-----SINSKECAGV 329
+ + + ++A + A +A+L + + N
Sbjct: 308 --ILITEHIGTSKLPTVSARVAKLVAFHLAMQAHLIASEETGFHTKGGRYKPNPLIYDFG 365
Query: 330 FLVAAENAVKVALEAIQCLGGNGYINDYPTGRYLRDAKL------YEIGAGTSEVRRIVI 383
+N + V E + G + + P+ D++ G + R+ I
Sbjct: 366 RAHFLQNQMSVMYELLDLAGRSSLM--IPSEGQWDDSQSGQWFVKLNNGPKGNPRERVQI 423
Query: 384 GRSI 387
GR I
Sbjct: 424 GRVI 427
>2or0_A Hydroxylase; APC7385, rhodococcus SP. RHA1, structu genomics,
PSI-2, protein structure initiative, midwest CENT
structural genomics, MCSG; HET: MSE; 2.10A {Rhodococcus
SP}
Length = 414
Score = 130 bits (328), Expect = 3e-34
Identities = 58/354 (16%), Positives = 104/354 (29%), Gaps = 37/354 (10%)
Query: 34 AADIDSTNDFKDLRKVWKDFGQLGLLGITVPEEFGGSEMGYLDHVIAMEELSRSSASVGL 93
A ++ D G + + P +GG E+ + + ++ + G
Sbjct: 40 AVQSEADCRLTD--AAAGLLRDSGAIRLLQPRLYGGYEVHPREFAETVMGVAALDGASGW 97
Query: 94 SFVAHSNLCVNQINRHATKQQKEKYLPALCSGEKIGCLAMSEPGSGSDVISMSLKAEKKG 153
+ ++ + Q+E + + + G A
Sbjct: 98 VTGIV-GVHPWELAFADPQVQEEIWGED---NDTWMASPYAPMG----------VATPVD 143
Query: 154 DMYVLNGNKFWITNGPDADIAVVYARTNPNADKKQHGISTFIVEKGTPGFSKGKKLNKLG 213
YVL G + + A + A S ++ T + +G
Sbjct: 144 GGYVLKGRWSFSSGTDHCQWAFLGAMVGDGEGGIATPSSLHVILPRTDYQIVEDTWDVIG 203
Query: 214 MRGSNTGELIFENCQVPAENLLG------------GENKGAYVLMSGLDLERLVISAGPV 261
+RG+ + +LI + VP L M + L I+A +
Sbjct: 204 LRGTGSKDLIVDGAFVPGYRTLNAAKVMDGRAQKEAGRPEPLFNMPYSCMFPLGITAAVI 263
Query: 262 GIMQACCDFAFNYVHERVQF-GTRIGEFQLMQGKIADMHVALSASRAYLYSVA----KAC 316
GI + +RV G +I E + I + ++ASR L A
Sbjct: 264 GITEGALACHIAVQKDRVAITGQKIKEDPYVLSAIGESAAEINASRVSLIETADRFYDKV 323
Query: 317 DRGSINSKECAGVFLVAAENAVKVALEAIQCL----GGNGYINDYPTGRYLRDA 366
D G + E + A A+ A + GG P R+ RDA
Sbjct: 324 DAGKEITFEERAIGRRTQIAAAWRAVRAADEIFARAGGGALHYKTPMQRFWRDA 377
>2yyk_A 4-hydroxyphenylacetate-3-hydroxylase; structurome, riken spring-8
center, oxygnase component, 4- hydroxyphenylacetate
3-monooxygenase; 1.60A {Thermus thermophilus} PDB:
2yyl_A* 2yym_A* 2yyi_A* 2yyg_A* 2yyj_A*
Length = 481
Score = 116 bits (291), Expect = 6e-29
Identities = 44/308 (14%), Positives = 85/308 (27%), Gaps = 42/308 (13%)
Query: 113 QQKEKYLPALCSGEKIGCLAMSEPGSG--------SDVISMSLKAEKKGDMYVLNGNKFW 164
+ Y L + A++ P D ++ V+ G +
Sbjct: 124 ENVRNYYRYLRDQDLATTHALTNPQVNRARPPSGQPDPYIPVGVVKQTEKGIVVRGARMT 183
Query: 165 ITNGPDADIAVVYARTNPNADKKQHGISTFIVEKGTPGFSKGKKLNKLGMR--------- 215
T ++ + + +K F + TPG + +G
Sbjct: 184 ATFPLADEVLIFPSILLQAGSEKY--ALAFALPTSTPGLHFVCREALVGGDSPFDHPLSS 241
Query: 216 --GSNTGELIFENCQVPAENLLGGEN----KGAYVLMSGLDLERLVISAGPVGIMQACCD 269
+IF++ VP E + N AY L+ + A +A
Sbjct: 242 RVEEMDCLVIFDDVLVPWERVFILGNVELCNNAYGATGALNHMAHQVVALKTAKTEAFLG 301
Query: 270 FAFNYVHERVQFGTRIGEFQLMQGKIADMHVALSASRAYLYSVAKACDRGSINSKECAGV 329
A + G + +Q KIA++ V L A RA+ + +
Sbjct: 302 VA-----ALMAEGIGADVYGHVQEKIAEIIVYLEAMRAFWTRAEEEAKENAYGLLVPDRG 356
Query: 330 FLVAA-----ENAVKVALEAIQCLGGNGYINDYPTGRYLR-----DAKLYEIGAGTSEVR 379
L A ++ Q + P+ + + + + GA
Sbjct: 357 ALDGARNLYPRLYPRIREILEQIGA--SGLITLPSEKDFKGPLGPFLEKFLQGAALEAKE 414
Query: 380 RIVIGRSI 387
R+ + R
Sbjct: 415 RVALFRLA 422
>1u8v_A Gamma-aminobutyrate metabolism dehydratase/isomerase; ALFA-helixes,
beta-strands, lyase; HET: FAD; 1.60A {Clostridium
aminobutyricum} SCOP: a.29.3.1 e.6.1.1
Length = 490
Score = 111 bits (278), Expect = 4e-27
Identities = 41/364 (11%), Positives = 91/364 (25%), Gaps = 57/364 (15%)
Query: 61 ITVPEEFGGSEMGYLDHVI-----------AMEELSRSSASVGLSFVAHSNLC------- 102
+T G + ++ L + +AS V
Sbjct: 58 MTTKSNLIGKTINRFANLHQSTDDLRKKVKMQRLLGQKTASCFQRCVGMDAFNAVFSTTY 117
Query: 103 -VNQINRHATKQQKEKYLPALCSGEKIGCLAMSEPGSGSDVISMSLK--------AEKKG 153
++Q + +YL + + I AM++P + + K EK+
Sbjct: 118 EIDQKYGTNYHKNFTEYLKYIQENDLIVDGAMTDPKGDRGLAPSAQKDPDLFLRIVEKRE 177
Query: 154 DMYVLNGNKFWITNGPDADIAVVYARTNPNADKKQHGISTFIVEKGTPGFSKGKKLNKLG 213
D V+ G K T ++ ++ K + +S F G
Sbjct: 178 DGIVVRGAKAHQTGSINSHEHIIMPTIAMTEADKDYAVS-FACPSDADGLFMIYGRQSCD 236
Query: 214 MR---------------GSNTGELIFENCQVPAENLL--GGENKGAYVLMSGLDLERLVI 256
R G ++F+N +P + + + ++ R
Sbjct: 237 TRKMEEGADIDLGNKQFGGQEALVVFDNVFIPNDRIFLCQEYDFAGMMVERFAGYHRQSY 296
Query: 257 SAGPVGIMQACCDFAFNYVHERVQFGTRIGEFQLMQGKIADMHVALSASRAYLYSVAKAC 316
VG+ A + ++ K+ +M + +
Sbjct: 297 GGCKVGVGDVVIGAA-----ALAADYNGAQKASHVKDKLIEMTHLNETLYCCGIACSAEG 351
Query: 317 DRGSINSKECAGVFLVAA-----ENAVKVALEAIQCLGGNGYINDYPTGRYLRDAKLYEI 371
+ + + + ++ A GG P+ + +
Sbjct: 352 YPTAAGNYQIDLLLANVCKQNITRFPYEIVRLAEDIAGGLMVTM--PSEADFKSETVVGR 409
Query: 372 GAGT 375
T
Sbjct: 410 DGET 413
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 45.4 bits (107), Expect = 2e-05
Identities = 75/432 (17%), Positives = 138/432 (31%), Gaps = 134/432 (31%)
Query: 39 STND-FKDLRKVWKDFGQL---------GLLGITVPEEFGGSEMGYLDHVIAMEE-LSRS 87
+T+D F++LR +++ + L L + + + + E L
Sbjct: 165 NTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEK--VFTQGLNILEWLENP 222
Query: 88 S--------ASVGLSFVAHSNLCVNQINRHATKQQKEKYLPA----------LCSGEKIG 129
S S+ +S + V Q+ + + + P S +
Sbjct: 223 SNTPDKDYLLSIPISCPL---IGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVT 279
Query: 130 CLAMSEPGSGSDVISMSLKAEKKGDMYVLNGNKFWITNG-------PDADIAVVYARTNP 182
+A++E S KA + VL F+I G P+ + P
Sbjct: 280 AVAIAETDSWESFFVSVRKA-----ITVL----FFI--GVRCYEAYPNTSLP-------P 321
Query: 183 N--ADKKQHGISTFIVEKGTPGFSKGKKLNKLGMRGSNTGEL---IFE-NCQVPAEN--- 233
+ D ++ +G P L + ++ + + N +PA
Sbjct: 322 SILEDSLENN-------EGVPSP-------MLSISNLTQEQVQDYVNKTNSHLPAGKQVE 367
Query: 234 --LLGGENKGAYVLMSG--LDLERLVIS----AGPVGIMQACCDFAFNYVHER-VQFGTR 284
L+ G V+ SG L L ++ P G+ Q+ F+ ER ++F R
Sbjct: 368 ISLVNGAK--NLVV-SGPPQSLYGLNLTLRKAKAPSGLDQSRIPFS-----ERKLKFSNR 419
Query: 285 ---IGE-F--QLMQG---KI-ADM---HVALSAS--RAYLYSVAKACD----RGSINSKE 325
+ F L+ I D+ +V+ +A + +Y D GSI+ +
Sbjct: 420 FLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERI 479
Query: 326 CAGVFLVAA--ENAVKVALEAIQCLGGNGYINDYPTGRYLRDAKL-YEIGAGTSEVRRIV 382
+ + E + I G P G L + GT VR IV
Sbjct: 480 VDCIIRLPVKWETTTQFKATHILDFG--------P-GGASGLGVLTHRNKDGTG-VRVIV 529
Query: 383 IG---RSINAEY 391
G + + +Y
Sbjct: 530 AGTLDINPDDDY 541
Score = 44.3 bits (104), Expect = 6e-05
Identities = 25/107 (23%), Positives = 42/107 (39%), Gaps = 35/107 (32%)
Query: 285 IGEF--QLMQGKIADMHVALSAS----------------RAYLYSVAKACDRGSINSKEC 326
+ EF ++G D+H AL+A + Y + A+ + + K
Sbjct: 88 LTEFENCYLEGN--DIH-ALAAKLLQENDTTLVKTKELIKNY-IT-ARIMAKRPFDKKSN 142
Query: 327 AGVFLVAAENAVKVALEAIQCLGGNGYINDYPTGRY--LRDAKLYEI 371
+ +F E ++ AI GG G +DY + LRD LY+
Sbjct: 143 SALFRAVGEGNAQLV--AI--FGGQGNTDDY----FEELRD--LYQT 179
Score = 39.3 bits (91), Expect = 0.002
Identities = 51/358 (14%), Positives = 106/358 (29%), Gaps = 132/358 (36%)
Query: 39 STNDFKDLRKVWKDFGQLGLLGITVP---EEFGGSE------------MGYLDHVIAMEE 83
T F ++ + F + +P E F + +GY+ ++ +
Sbjct: 23 PTASFFIASQLQEQFNK------ILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSK 76
Query: 84 LSRSSASVGLSFVA-HSN-LCVNQINRHA----------TKQQKEK-----YLPALCSGE 126
+ + + L + L N I HA T K K Y+ A
Sbjct: 77 VGQFDQVLNLCLTEFENCYLEGNDI--HALAAKLLQENDTTLVKTKELIKNYITA----- 129
Query: 127 KIGCLAMSEPGSGSDVISMS--LKAEKKGD--MYVL-----NGNKFWITNGPDADIAVVY 177
+ P S S +A +G+ + + N + ++ ++ +Y
Sbjct: 130 ---RIMAKRPFDKK---SNSALFRAVGEGNAQLVAIFGGQGNTDDYF------EELRDLY 177
Query: 178 ARTNPNADKKQHGISTFIVEKGTPGFSKGKKLNKLGMRGSNTGELIFENCQV-------- 229
+ + I + L++L + ++ + +
Sbjct: 178 QTYHVL-------VGDLI-------KFSAETLSELIRTTLDAEKVFTQGLNILEWLENPS 223
Query: 230 --PAENLLGGENKGAYVLMSGLDLERLVISAGP-VGIMQACCDFAFNYVHERVQFGTRIG 286
P ++ L + +S P +G++Q +YV G G
Sbjct: 224 NTPDKDYL------LSIPIS-----------CPLIGVIQLA-----HYVVTAKLLGFTPG 261
Query: 287 EF-QLMQGKIADMHVA--LSASRAYLYSVAKACDRGSINSKECAGVFLVAAENAVKVA 341
E ++G A H ++A ++A+ S S F V+ A+ V
Sbjct: 262 ELRSYLKG--ATGHSQGLVTAV-----AIAET---DSWES------FFVSVRKAITVL 303
Score = 29.6 bits (66), Expect = 2.1
Identities = 24/101 (23%), Positives = 35/101 (34%), Gaps = 25/101 (24%)
Query: 3 KIDDTIYDLTEEQNKLRETVASYCKTHITPIAAD-I-------DSTNDFKDLRKVWKDFG 54
+I +YD T + + LR S I+ D I ++T FK + DFG
Sbjct: 456 QI--PVYD-TFDGSDLRVLSGS-----ISERIVDCIIRLPVKWETTTQFKATHIL--DFG 505
Query: 55 QLGLLGIT--VPEEFGGSEMGYLDHVIAMEELSRSSAS-VG 92
G G+ G+ G VI L + G
Sbjct: 506 PGGASGLGVLTHRNKDGT--GV--RVIVAGTLDINPDDDYG 542
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 30.6 bits (68), Expect = 0.99
Identities = 15/111 (13%), Positives = 38/111 (34%), Gaps = 21/111 (18%)
Query: 7 TIY-DLTEEQNKLRETVASYCKTHITPIAADIDSTNDFKDLRKVWKDFGQLGLLGITVPE 65
++ D + K+R T A N + L+ +K + I +
Sbjct: 495 MVFLDFRFLEQKIRHDS--------TAWNASGSILNTLQQLKF-YKPY-------ICDND 538
Query: 66 -EFGGSEMGYLDHVIAMEE---LSRSSASVGLSFVAHSNLCVNQINRHATK 112
++ LD + +EE S+ + + ++ +A + ++ +
Sbjct: 539 PKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQR 589
>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol,
oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila
lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A*
1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*
Length = 254
Score = 29.2 bits (66), Expect = 2.1
Identities = 16/66 (24%), Positives = 25/66 (37%), Gaps = 6/66 (9%)
Query: 8 IYDLTEEQNKLRETVASYCKTHITPIAADI-DSTNDFKDL-RKVWKDFGQLGLL----GI 61
I D E L E A K +IT D+ + K L +K++ + +L GI
Sbjct: 35 ILDRVENPTALAELKAINPKVNITFHTYDVTVPVAESKKLLKKIFDQLKTVDILINGAGI 94
Query: 62 TVPEEF 67
+
Sbjct: 95 LDDHQI 100
>4e3x_A Delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial; amino
acid metabolism, proline inhibition, oxidoreductase;
HET: 16P PGE; 1.24A {Mus musculus} PDB: 3v9k_A* 3v9l_A*
3v9j_A* 3v9g_A 3v9h_A 3v9i_A
Length = 563
Score = 28.4 bits (64), Expect = 4.3
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 335 ENAVKVALEAIQCLGGNGYINDYPTG 360
+ V+ A ++ GN YIND TG
Sbjct: 487 KAIVQEATRMLRNAAGNFYINDKSTG 512
>2j66_A BTRK, decarboxylase; butirosin, AHBA biosynthesis, lyase; HET: PLP;
1.65A {Bacillus circulans}
Length = 428
Score = 27.9 bits (63), Expect = 6.2
Identities = 9/44 (20%), Positives = 13/44 (29%), Gaps = 15/44 (34%)
Query: 171 ADIAVVYARTNPNADKKQHGISTFIVEKGTPGFSKGKKLNKLGM 214
A +A+ R NP+ I G + GM
Sbjct: 133 ARVAI---RINPDKSFGSTAIKM------------GGVPRQFGM 161
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.135 0.393
Gapped
Lambda K H
0.267 0.0754 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,040,876
Number of extensions: 371061
Number of successful extensions: 974
Number of sequences better than 10.0: 1
Number of HSP's gapped: 794
Number of HSP's successfully gapped: 50
Length of query: 392
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 297
Effective length of database: 4,049,298
Effective search space: 1202641506
Effective search space used: 1202641506
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.1 bits)