RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12318
(392 letters)
>d1ivha2 e.6.1.1 (A:6-241) Isovaleryl-coa dehydrogenase, NM domains
{Human (Homo sapiens) [TaxId: 9606]}
Length = 236
Score = 237 bits (605), Expect = 2e-77
Identities = 148/236 (62%), Positives = 189/236 (80%)
Query: 4 IDDTIYDLTEEQNKLRETVASYCKTHITPIAADIDSTNDFKDLRKVWKDFGQLGLLGITV 63
+DD I L+EEQ +LR+T+A + + H+ P A +ID +N+FK+LR+ WK G LG+LGIT
Sbjct: 1 VDDAINGLSEEQRQLRQTMAKFLQEHLAPKAQEIDRSNEFKNLREFWKQLGNLGVLGITA 60
Query: 64 PEEFGGSEMGYLDHVIAMEELSRSSASVGLSFVAHSNLCVNQINRHATKQQKEKYLPALC 123
P ++GGS +GYL+HV+ MEE+SR+S +VGLS+ AHSNLC+NQ+ R+ + QKEKYLP L
Sbjct: 61 PVQYGGSGLGYLEHVLVMEEISRASGAVGLSYGAHSNLCINQLVRNGNEAQKEKYLPKLI 120
Query: 124 SGEKIGCLAMSEPGSGSDVISMSLKAEKKGDMYVLNGNKFWITNGPDADIAVVYARTNPN 183
SGE IG LAMSEP +GSDV+SM LKAEKKG+ Y+LNGNKFWITNGPDAD+ +VYA+T+
Sbjct: 121 SGEYIGALAMSEPNAGSDVVSMKLKAEKKGNHYILNGNKFWITNGPDADVLIVYAKTDLA 180
Query: 184 ADKKQHGISTFIVEKGTPGFSKGKKLNKLGMRGSNTGELIFENCQVPAENLLGGEN 239
A GI+ FIVEKG PGFS KKL+KLGMRGSNT ELIFE+C++PA N+LG EN
Sbjct: 181 AVPASRGITAFIVEKGMPGFSTSKKLDKLGMRGSNTCELIFEDCKIPAANILGHEN 236
>d1rx0a2 e.6.1.1 (A:10-240) Isobutyryl-CoA dehydrogenase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 231
Score = 185 bits (469), Expect = 3e-57
Identities = 83/238 (34%), Positives = 125/238 (52%), Gaps = 7/238 (2%)
Query: 1 TYKIDDTIYDLTEEQNKLRETVASYCKTHITPIAADIDSTNDFKDLRKVWKDFGQLGLLG 60
T ID ++ L EEQ + ++ + + P A+ D F V + QLG G
Sbjct: 1 TSCIDPSM-GLNEEQKEFQKVAFDFAAREMAPNMAEWDQKELFP--VDVMRKAAQLGFGG 57
Query: 61 ITVPEEFGGSEMGYLDHVIAMEELSRSSASVGLSFVAHSNLCVNQINRHATKQQKEKYLP 120
+ + + GGS + LD + E L+ S ++++ N+C I+ ++Q+ K+ P
Sbjct: 58 VYIQTDVGGSGLSRLDTSVIFEALATGCTSTT-AYISIHNMCAWMIDSFGNEEQRHKFCP 116
Query: 121 ALCSGEKIGCLAMSEPGSGSDVISMSLKAEKKGDMYVLNGNKFWITNGPDADIAVVYART 180
LC+ EK ++EPGSGSD S+ A+K+GD Y+LNG+K +I+ ++DI VV R
Sbjct: 117 PLCTMEKFASYCLTEPGSGSDAASLLTSAKKQGDHYILNGSKAFISGAGESDIYVVMCR- 175
Query: 181 NPNADKKQHGISTFIVEKGTPGFSKGKKLNKLGMRGSNTGELIFENCQVPAENLLGGE 238
GIS +VEKGTPG S GKK K+G T +IFE+C VP N +G E
Sbjct: 176 --TGGPGPKGISCIVVEKGTPGLSFGKKEKKVGWNSQPTRAVIFEDCAVPVANRIGSE 231
>d1jqia2 e.6.1.1 (A:4-234) Butyryl-CoA dehydrogenase, NM domains
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 231
Score = 180 bits (458), Expect = 1e-55
Identities = 97/229 (42%), Positives = 144/229 (62%), Gaps = 4/229 (1%)
Query: 10 DLTEEQNKLRETVASYCKTHITPIAADIDSTNDFKDLRKVWKDFGQLGLLGITVPEEFGG 69
+L E LR+T + + + PIAA +D + F K G+LGLL + VPEE G
Sbjct: 6 ELPETHQMLRQTCRDFAEKELVPIAAQLDKEHLFP--TSQVKKMGELGLLAMDVPEELSG 63
Query: 70 SEMGYLDHVIAMEELSRSSASVGLSFVAHSNLCVNQINRHATKQQKEKYLPALCSGEKIG 129
+ + YL + IA+EE+SR AS G+ +++L + I + + QQK++++ +G+KIG
Sbjct: 64 AGLDYLAYSIALEEISRGCASTGVIMSVNNSLYLGPILKFGSSQQKQQWITPFTNGDKIG 123
Query: 130 CLAMSEPGSGSDVISMSLKAEKKGDMYVLNGNKFWITNGPDADIAVVYARTNPNADKKQH 189
C A+SEPG+GSD + S A ++GD +VLNG K WITN +A VV+A T+ + ++
Sbjct: 124 CFALSEPGNGSDAGAASTTAREEGDSWVLNGTKAWITNSWEASATVVFASTDRS--RQNK 181
Query: 190 GISTFIVEKGTPGFSKGKKLNKLGMRGSNTGELIFENCQVPAENLLGGE 238
GIS F+V TPG + GKK +KLG+R S+T LIFE+C++P ENLLG
Sbjct: 182 GISAFLVPMPTPGLTLGKKEDKLGIRASSTANLIFEDCRIPKENLLGEP 230
>d3mdea2 e.6.1.1 (A:11-241) Medium chain acyl-CoA dehydrogenase, NM
domains {Pig (Sus scrofa) [TaxId: 9823]}
Length = 231
Score = 180 bits (456), Expect = 2e-55
Identities = 79/231 (34%), Positives = 126/231 (54%), Gaps = 4/231 (1%)
Query: 9 YDLTEEQNKLRETVASYCKTHITPIAADIDSTNDFKDLRKVWKDFGQLGLLGITVPEEFG 68
++LTE+Q + + T + + I P+AA+ D T ++ + K +LGL+ +PE FG
Sbjct: 4 FELTEQQKEFQATARKFAREEIIPVAAEYDRTGEY--PVPLLKRAWELGLMNTHIPESFG 61
Query: 69 GSEMGYLDHVIAMEELSRSSASVGLSFVAHSNLCVNQINRHATKQQKEKYLPALCSGEKI 128
G +G +D + EE + + + + L + QQ++KYL + +
Sbjct: 62 GLGLGIIDSCLITEE-LAYGCTGVQTAIEANTLGQVPLIIGGNYQQQKKYLGRMTEEPLM 120
Query: 129 GCLAMSEPGSGSDVISMSLKAEKKGDMYVLNGNKFWITNGPDADIAVVYARTNPNADKKQ 188
++EPG+GSDV + KAEKKGD Y++NG K WITNG A+ + AR++P+
Sbjct: 121 CAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKANWYFLLARSDPDPKAPA 180
Query: 189 H-GISTFIVEKGTPGFSKGKKLNKLGMRGSNTGELIFENCQVPAENLLGGE 238
+ FIVE TPG G+K +G R S+T ++FE+ +VP EN+L GE
Sbjct: 181 SKAFTGFIVEADTPGVQIGRKEINMGQRCSDTRGIVFEDVRVPKENVLTGE 231
>d2d29a2 e.6.1.1 (A:2-234) Acyl-CoA dehydrogenase {Thermus
thermophilus [TaxId: 274]}
Length = 233
Score = 168 bits (426), Expect = 7e-51
Identities = 77/230 (33%), Positives = 122/230 (53%), Gaps = 4/230 (1%)
Query: 9 YDLTEEQNKLRETVASYCKTHITPIAADIDSTNDFKDLRKVWKDFGQLGLLGITVPEEFG 68
++ E+ ++ + K + P AA+ D T F + + + G+ G VPE +G
Sbjct: 4 FEEGAEERQVLGPFREFLKAEVAPGAAERDRTGAFP--WDLVRKLAEFGVFGALVPEAYG 61
Query: 69 GSEMGYLDHVIAMEELSRSSASVGLSFVAHSNLCVNQINRHATKQQKEKYLPALCSGEKI 128
G+ + +E ++ ++ L+ +H++L I ++ QKE +LP L SGE +
Sbjct: 62 GAGLSTRLFARMVEAIAYYDGALALTVASHNSLATGHILLAGSEAQKEAFLPKLASGEAL 121
Query: 129 GCLAMSEPGSGSDVISMSLKAEKKGDMYVLNGNKFWITNGPDADIAVVYARTNP--NADK 186
G ++EPGSGSD ++ KAEK + LNG K +IT G A + VV ART+P + ++
Sbjct: 122 GAWGLTEPGSGSDAAALKTKAEKVEGGWRLNGTKQFITQGSVAGVYVVMARTDPPPSPER 181
Query: 187 KQHGISTFIVEKGTPGFSKGKKLNKLGMRGSNTGELIFENCQVPAENLLG 236
K GIS F + G G+K KLG+ S+T +LI E+ VP E LLG
Sbjct: 182 KHQGISAFAFFRPERGLKVGRKEEKLGLTASDTAQLILEDLFVPEEALLG 231
>d1ukwa2 e.6.1.1 (A:32-258) Medium chain acyl-CoA dehydrogenase, NM
domains {Thermus thermophilus [TaxId: 274]}
Length = 227
Score = 165 bits (418), Expect = 7e-50
Identities = 86/230 (37%), Positives = 129/230 (56%), Gaps = 5/230 (2%)
Query: 9 YDLTEEQNKLRETVASYCKTHITPIAADIDSTNDFKDLRKVWKDFGQLGLLGITVPEEFG 68
+ LTEEQ +L+ + K I P+A + D + V + ++GLL +PEE+G
Sbjct: 3 FSLTEEQRQLQALARRFAKEVILPVAQEYDEKEEVP--WPVIEKLHEVGLLNAIIPEEYG 60
Query: 69 GSEMGYLDHVIAMEELSRSSASVGLSFVAHSNLCVNQINRHATKQQKEKYLPALCSGEKI 128
G + LD VI EEL+ + + +A + + T++QKE++L L +
Sbjct: 61 GMGLKMLDEVIVGEELAYACMGIYTIPMASDL-GITPVLLAGTEEQKERFLRPLTEKPAL 119
Query: 129 GCLAMSEPGSGSDVISMSLKAEKKGDMYVLNGNKFWITNGPDADIAVVYARTNPNADKKQ 188
A+SEPG+GSD ++ +A ++GD YVLNG K WI+NG +A+ VV+A NP +
Sbjct: 120 AAFALSEPGNGSDAAALKTRAIRQGDHYVLNGTKMWISNGGEAEWVVVFATVNPE--LRH 177
Query: 189 HGISTFIVEKGTPGFSKGKKLNKLGMRGSNTGELIFENCQVPAENLLGGE 238
G+ +VE+GTPGF K K+G R S T EL+FE+ +VP EN LG E
Sbjct: 178 KGVVALVVERGTPGFKAIKIHGKMGQRASGTYELVFEDVKVPVENRLGEE 227
>d1buca2 e.6.1.1 (A:1-232) Butyryl-CoA dehydrogenase, NM domains
{Megasphaera elsdenii [TaxId: 907]}
Length = 232
Score = 160 bits (406), Expect = 7e-48
Identities = 84/232 (36%), Positives = 127/232 (54%), Gaps = 4/232 (1%)
Query: 9 YDLTEEQNKLRETVASYCKTHITPIAADIDSTNDF-KDLRKVWKDFGQLGLLGITVPEEF 67
++LT+ Q + + + + P + D + K+L G G
Sbjct: 3 FNLTDIQQDFLKLAHDFGEKKLAPTVTERDHKGIYDKELIDELLSLGITGAYFEEKYGGS 62
Query: 68 GGSEMGYLDHVIAMEELSRSSASVGLSFVAHSNLCVNQINRHATKQQKEKYLPALCSGEK 127
G L +++A+EEL++ A V ++ A +LC N I + T+ QKEK+L L G K
Sbjct: 63 GDDGGDVLSYILAVEELAKYDAGVAITLSATVSLCANPIWQFGTEAQKEKFLVPLVEGTK 122
Query: 128 IGCLAMSEPGSGSDVISMSLKAEKKGD-MYVLNGNKFWITNGPDADIAVVYARTNPNADK 186
+G ++EP +G+D A K D Y LNG+K +ITNG ADI +V+A T+ K
Sbjct: 123 LGAFGLTEPNAGTDASGQQTIATKNDDGTYTLNGSKIFITNGGAADIYIVFAMTDK--SK 180
Query: 187 KQHGISTFIVEKGTPGFSKGKKLNKLGMRGSNTGELIFENCQVPAENLLGGE 238
HGI+ FI+E GTPGF+ GKK +K+G+ S T EL+F++ +VPAEN+LG E
Sbjct: 181 GNHGITAFILEDGTPGFTYGKKEDKMGIHTSQTMELVFQDVKVPAENMLGEE 232
>d1siqa2 e.6.1.1 (A:3-238) Glutaryl-CoA dehydrogenase GCDH {Human
(Homo sapiens) [TaxId: 9606]}
Length = 236
Score = 152 bits (384), Expect = 1e-44
Identities = 73/232 (31%), Positives = 120/232 (51%), Gaps = 11/232 (4%)
Query: 10 DLTEEQNKLRETVASYCKTHITPIAADIDSTNDFKDLRKVWKDFGQLGLLGITVPEEFGG 69
LT ++ +R+T +YC+ + P + F R++ + G+LG+ + +G
Sbjct: 13 QLTTDEILIRDTFRTYCQERLMPRILLANRNEVFH--REIISEMGELGV-LGPTIKGYGC 69
Query: 70 SEMGYLDHVIAMEELSRSSASVGLSFVAHSNLCVNQINRHATKQQKEKYLPALCSGEKIG 129
+ + + + + EL R + + S+L ++ I + +++Q++KYLP L GE +G
Sbjct: 70 AGVSSVAYGLLARELERVDSGYRSAMSVQSSLVMHPIYAYGSEEQRQKYLPQLAKGELLG 129
Query: 130 CLAMSEPGSGSDVISMSLKAEKKGDM--YVLNGNKFWITNGPDADIAVVYARTNPNADKK 187
C ++EP SGSD SM +A Y LNG K WITN P AD+ VV+AR +
Sbjct: 130 CFGLTEPNSGSDPSSMETRAHYNSSNKSYTLNGTKTWITNSPMADLFVVWAR------CE 183
Query: 188 QHGISTFIVEKGTPGFSKGKKLNKLGMRGSNTGELIFENCQVPAENLLGGEN 239
I F++EKG G S + K +R S TG +I + +VP EN+L G +
Sbjct: 184 DGCIRGFLLEKGMRGLSAPRIQGKFSLRASATGMIIMDGVEVPEENVLPGAS 235
>d2ddha3 e.6.1.2 (A:1-267) Peroxisomal acyl-CoA oxidase-II, domains
1 and 2 {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 267
Score = 138 bits (348), Expect = 5e-39
Identities = 48/256 (18%), Positives = 92/256 (35%), Gaps = 30/256 (11%)
Query: 8 IYDLTEEQNKLRETVASYCKTHITPIAADIDSTNDFKDLRKVWKDFGQLGLLGITVPEEF 67
I D + E + R + + P D +F + ++ + + E+
Sbjct: 22 ILDGSPENTRRRREIENLILND--PDFQHED--YNFLTRSQRYEVAVKKSATMVKKMREY 77
Query: 68 GGSEMGYLDHVIAMEELSRSSASVGLSFVAHSNLCVNQINRHATKQQKEKYLPALCSGEK 127
G S+ + M + H + + + AT +Q+E++ + E
Sbjct: 78 GISDPEEI-----MWFKNSVHRGHPEPLDLHLGMFLPTLLHQATAEQQERFFMPAWNLEI 132
Query: 128 IGCLAMSEPGSGSDVISMSLKA-------EKKGDMYVLNGNKFWITNGPD-ADIAVVYAR 179
G A +E G G+ + + A E + + K+W ++ A+V A+
Sbjct: 133 TGTYAQTEMGHGTHLRGLETTATYDPKTQEFILNSPTVTSIKWWPGGLGKTSNHAIVLAQ 192
Query: 180 TNPNADKKQHGISTFIV-------EKGTPGFSKGKKLNKLGMRGSNTGELIFENCQVPAE 232
+ +G+ F+V K PG + G K G + G L +N ++P E
Sbjct: 193 LITQG--ECYGLHAFVVPIREIGTHKPLPGITVGDIGPKFGYEEMDNGYLKMDNYRIPRE 250
Query: 233 NLLGGENK----GAYV 244
N+L + G YV
Sbjct: 251 NMLMKYAQVKPDGTYV 266
>d1w07a3 e.6.1.2 (A:2-272) Acyl-coenzyme A oxidase 1, domains 1 and
2 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 271
Score = 134 bits (339), Expect = 1e-37
Identities = 58/261 (22%), Positives = 104/261 (39%), Gaps = 40/261 (15%)
Query: 8 IYDLTEEQNKLRETVASYCKTHITPIAADIDSTNDFKDLRKVWKDFGQLGLLGITVPEEF 67
++ + ++ + +A + P+ + + +K + E
Sbjct: 23 VWAGSRHAFEVSDRIARLVASD--PVFEKSNRARLSRKEL--FKSTLRKCAHAFKRIIEL 78
Query: 68 GGSEM--GYLDHVIAMEELSRSSASVGLSFVAHSNLCVNQINRHATKQQKEKYLPALCSG 125
+E G L H I A V L H + V I T++Q++K+L
Sbjct: 79 RLNEEEAGRLRHFIDQP------AYVDL----HWGMFVPAIKGQGTEEQQKKWLSLANKM 128
Query: 126 EKIGCLAMSEPGSGSDV--ISMSLKAEKKGDMYVLN-----GNKFWITNG-PDADIAVVY 177
+ IGC A +E G GS+V + + + K D +V++ +K+W + AVVY
Sbjct: 129 QIIGCYAQTELGHGSNVQGLETTATLDPKTDEFVIHTPTQTASKWWPGGLGKVSTHAVVY 188
Query: 178 ARTNPNADKKQHGISTFIVE-------KGTPGFSKGKKLNKLG---MRGSNTGELIFENC 227
AR + K +GI FIV+ P + G K+G + G L+F++
Sbjct: 189 ARLIT--NGKDYGIHGFIVQLRSLEDHSPLPNITVGDIGTKMGNGAYNSMDNGFLMFDHV 246
Query: 228 QVPAENLLGGENK----GAYV 244
++P + +L +K G YV
Sbjct: 247 RIPRDQMLMRLSKVTREGEYV 267
>d2c12a2 e.6.1.1 (A:2-260) Nitroalkane oxidase {Fusarium oxysporum
[TaxId: 5507]}
Length = 259
Score = 131 bits (330), Expect = 1e-36
Identities = 52/256 (20%), Positives = 96/256 (37%), Gaps = 28/256 (10%)
Query: 9 YDLTEEQNKLRETVASYCKTHITPIAADIDSTND----FKDLRKVWKDFGQLGLLGITVP 64
+ L+ Q + R ++ T +T +A+ + D F+ R +++ + GL+ VP
Sbjct: 3 FKLSPSQLEARRHAQAFANTVLTKASAEYSTQKDQLSRFQATRPFYREAVRHGLIKAQVP 62
Query: 65 EEFGGSEMGYLDHVIAMEELSRSSASVGLSFVAHSNLCVNQINRHATKQQKEKY-LPALC 123
GG+ + I +EEL + ++ VA + + I + Q++
Sbjct: 63 IPLGGTMESLVHESIILEELFAVEPATSITIVATALGLMPVILCDSPSLQEKFLKPFISG 122
Query: 124 SGEKIGCLAMSEPGSGS-----DVISMSLKAEKKGDMYVLNGNKFWITNGPDAD-----I 173
GE + L SEP + + A K G+ +V++G K W +N D +
Sbjct: 123 EGEPLASLMHSEPNGTANWLQKGGPGLQTTARKVGNEWVISGEKLWPSNSGGWDYKGADL 182
Query: 174 AVVYARTNPNA-------DKKQHGISTFIVEKGTPGFS------KGKKLNKLGMRGSNTG 220
A V R + + I+ +V + T + + G ++
Sbjct: 183 ACVVCRVSDDPSKPQDPNVDPATQIAVLLVTRETIANNKKDAYQILGEPELAGHITTSGP 242
Query: 221 ELIFENCQVPAENLLG 236
F VP ENLL
Sbjct: 243 HTRFTEFHVPHENLLC 258
>d1ukwa1 a.29.3.1 (A:259-410) Medium chain acyl-CoA dehydrogenase,
C-domain {Thermus thermophilus [TaxId: 274]}
Length = 152
Score = 115 bits (289), Expect = 9e-32
Identities = 54/148 (36%), Positives = 83/148 (56%)
Query: 240 KGAYVLMSGLDLERLVISAGPVGIMQACCDFAFNYVHERVQFGTRIGEFQLMQGKIADMH 299
+G + M L+ R+ ++AG VG+ + D A Y ER FG I FQ +Q K+ DM
Sbjct: 2 EGFKIAMQTLNKTRIPVAAGSVGVARRALDEARKYAKEREAFGEPIANFQAIQFKLVDML 61
Query: 300 VALSASRAYLYSVAKACDRGSINSKECAGVFLVAAENAVKVALEAIQCLGGNGYINDYPT 359
+ + +R Y Y A D+G ++ A A+E A + A +AIQ GG GY+ ++P
Sbjct: 62 IGIETARMYTYYAAWLADQGLPHAHASAIAKAYASEIAFEAANQAIQIHGGYGYVREFPV 121
Query: 360 GRYLRDAKLYEIGAGTSEVRRIVIGRSI 387
+ LRD KL +I GT+E++R++I R I
Sbjct: 122 EKLLRDVKLNQIYEGTNEIQRLIIARHI 149
>d1buca1 a.29.3.1 (A:233-383) Butyryl-CoA dehydrogenase, C-domain
{Megasphaera elsdenii [TaxId: 907]}
Length = 151
Score = 113 bits (282), Expect = 8e-31
Identities = 54/148 (36%), Positives = 86/148 (58%)
Query: 240 KGAYVLMSGLDLERLVISAGPVGIMQACCDFAFNYVHERVQFGTRIGEFQLMQGKIADMH 299
KG + M LD R+ ++A +GI +A A Y +RVQFG + +FQ + K+ADM
Sbjct: 2 KGFKIAMMTLDGGRIGVAAQALGIAEAALADAVEYSKQRVQFGKPLCKFQSISFKLADMK 61
Query: 300 VALSASRAYLYSVAKACDRGSINSKECAGVFLVAAENAVKVALEAIQCLGGNGYINDYPT 359
+ + A+R +Y A G + + A VA++ A++V EA+Q GG GY +YP
Sbjct: 62 MQIEAARNLVYKAACKKQEGKPFTVDAAIAKRVASDVAMRVTTEAVQIFGGYGYSEEYPV 121
Query: 360 GRYLRDAKLYEIGAGTSEVRRIVIGRSI 387
R++RDAK+ +I GT+EV+ +V G ++
Sbjct: 122 ARHMRDAKITQIYEGTNEVQLMVTGGAL 149
>d1ivha1 a.29.3.1 (A:242-392) Isovaleryl-CoA dehydrogenase, C-domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 151
Score = 111 bits (278), Expect = 3e-30
Identities = 101/151 (66%), Positives = 121/151 (80%)
Query: 240 KGAYVLMSGLDLERLVISAGPVGIMQACCDFAFNYVHERVQFGTRIGEFQLMQGKIADMH 299
KG YVLMSGLDLERLV++ GP+G+MQA D Y+H R FG +IG FQLMQGK+ADM+
Sbjct: 1 KGVYVLMSGLDLERLVLAGGPLGLMQAVLDHTIPYLHVREAFGQKIGHFQLMQGKMADMY 60
Query: 300 VALSASRAYLYSVAKACDRGSINSKECAGVFLVAAENAVKVALEAIQCLGGNGYINDYPT 359
L A R Y+Y+VAKACD G +K+CAGV L +AE A +VAL+ IQC GGNGYIND+P
Sbjct: 61 TRLMACRQYVYNVAKACDEGHCTAKDCAGVILYSAECATQVALDGIQCFGGNGYINDFPM 120
Query: 360 GRYLRDAKLYEIGAGTSEVRRIVIGRSINAE 390
GR+LRDAKLYEIGAGTSEVRR+VIGR+ NA+
Sbjct: 121 GRFLRDAKLYEIGAGTSEVRRLVIGRAFNAD 151
>d1r2ja2 e.6.1.1 (A:3-212) Protein FkbI {Streptomyces hygroscopicus
[TaxId: 1912]}
Length = 210
Score = 109 bits (272), Expect = 1e-28
Identities = 49/214 (22%), Positives = 79/214 (36%), Gaps = 12/214 (5%)
Query: 29 HITPIAADIDSTNDFKDLRKVWKDFGQLGLLGITVPEEFGGSEMGYLDHVIAMEELSRSS 88
+ AA+ D++ + R + G GLL V E GG +G ++ S
Sbjct: 9 LVGDRAAEWDTSGELP--RDLLVRLGADGLLCAEVAAEHGGLGLGSREN--GEFTAHVGS 64
Query: 89 ASVGLSFVAHSNLCVNQINRHATKQQKEKYLPALCSGEKIGCLAMSEPGSGSDVISMSLK 148
L V S + + + K+ + SE +GSD+ +M +
Sbjct: 65 LCSSLRSVMTSQGMAAWTVQRLGDAGQRATFLKELTSGKLAAVGFSERQAGSDLSAMRTR 124
Query: 149 AEKKGDMYVLNGNKFWITNGPDADIAVVYARTNPNADKKQHGISTFIVEKGTPGFSKGKK 208
GD V++G+K W T AD VV+ + +V TPG +
Sbjct: 125 VRLDGDTAVVDGHKVWTTAAAYADHLVVFGLQED------GSGAVVVVPADTPGVRVERV 178
Query: 209 LNKLGMRGSNTGELIFENCQVPAENLLGGENKGA 242
G R + +L + +VPA +L G GA
Sbjct: 179 PKPSGCRAAGHADLHLDQVRVPAGAVLAGS--GA 210
>d1jqia1 a.29.3.1 (A:235-387) Butyryl-CoA dehydrogenase, C-domain
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 153
Score = 105 bits (262), Expect = 7e-28
Identities = 58/152 (38%), Positives = 86/152 (56%)
Query: 241 GAYVLMSGLDLERLVISAGPVGIMQACCDFAFNYVHERVQFGTRIGEFQLMQGKIADMHV 300
G + M LD+ R+ I++ +GI QA D A Y R FG + + Q +Q K+ADM +
Sbjct: 2 GFKIAMQTLDMGRIGIASQALGIAQASLDCAVKYAENRHAFGAPLTKLQNIQFKLADMAL 61
Query: 301 ALSASRAYLYSVAKACDRGSINSKECAGVFLVAAENAVKVALEAIQCLGGNGYINDYPTG 360
AL ++R + A D +KE A L A+E A ++ +AIQ LGG GY+ + P
Sbjct: 62 ALESARLLTWRAAMLKDNKKPFTKESAMAKLAASEAATAISHQAIQILGGMGYVTEMPAE 121
Query: 361 RYLRDAKLYEIGAGTSEVRRIVIGRSINAEYK 392
RY RDA++ EI GTSE++R+VI + Y+
Sbjct: 122 RYYRDARITEIYEGTSEIQRLVIAGHLLRSYR 153
>d1u8va2 e.6.1.1 (A:1-275) 4-hydroxybutyryl-CoA dehydratase AbfD, NM
domains {Clostridium aminobutyricum [TaxId: 33953]}
Length = 275
Score = 107 bits (269), Expect = 1e-27
Identities = 21/146 (14%), Positives = 44/146 (30%), Gaps = 24/146 (16%)
Query: 113 QQKEKYLPALCSGEKIGCLAMSEPGSGSDVISMSLK--------AEKKGDMYVLNGNKFW 164
+ +YL + + I AM++P + + K EK+ D V+ G K
Sbjct: 129 KNFTEYLKYIQENDLIVDGAMTDPKGDRGLAPSAQKDPDLFLRIVEKREDGIVVRGAKAH 188
Query: 165 ITNGPDADIAVVYARTNPNADKKQHGISTFIVEKGTPGFSKGKKLNKLGMRGSNTG---- 220
T ++ ++ + + +F G R G
Sbjct: 189 QTGSINSHEHIIMPTI-AMTEADKDYAVSFACPSDADGLFMIYGRQSCDTRKMEEGADID 247
Query: 221 -----------ELIFENCQVPAENLL 235
++F+N +P + +
Sbjct: 248 LGNKQFGGQEALVVFDNVFIPNDRIF 273
>d2d29a1 a.29.3.1 (A:235-387) Acyl-CoA dehydrogenase {Thermus
thermophilus [TaxId: 274]}
Length = 153
Score = 104 bits (259), Expect = 1e-27
Identities = 64/148 (43%), Positives = 84/148 (56%)
Query: 240 KGAYVLMSGLDLERLVISAGPVGIMQACCDFAFNYVHERVQFGTRIGEFQLMQGKIADMH 299
KG Y ++ LD R+ I+A VG+ QA D+A Y R FG I EF+ + K+A+
Sbjct: 2 KGFYDVLRVLDGGRIGIAAMAVGLGQAALDYALAYAKGREAFGRPIAEFEGVSFKLAEAA 61
Query: 300 VALSASRAYLYSVAKACDRGSINSKECAGVFLVAAENAVKVALEAIQCLGGNGYINDYPT 359
L A+R A+ D G + E A L A+E AVK EAIQ LGG GY+ DYP
Sbjct: 62 TELEAARLLYLKAAELKDAGRPFTLEAAQAKLFASEAAVKACDEAIQILGGYGYVKDYPV 121
Query: 360 GRYLRDAKLYEIGAGTSEVRRIVIGRSI 387
RY RDA+L IG GTSE+ ++VI R +
Sbjct: 122 ERYWRDARLTRIGEGTSEILKLVIARRL 149
>d1w07a1 a.29.3.2 (A:273-461) Acyl-coenzyme A oxidase 1, domains 3
and 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 189
Score = 104 bits (261), Expect = 2e-27
Identities = 20/168 (11%), Positives = 43/168 (25%), Gaps = 19/168 (11%)
Query: 244 VLMSGLDLERLVISAGPVGIMQACCDFAFNYVHERVQFGTR-------IGEFQLMQGKIA 296
++ + R I A + A Y R QFG + +++ Q ++
Sbjct: 4 LVYGTMVYVRQTIVADASNALSRAVCIATRYSAVRRQFGAHNGGIETQVIDYKTQQNRLF 63
Query: 297 DMHVALSASRAYLYSVAKACDRGSINSKECAGVF------------LVAAENAVKVALEA 344
+ + A R + + + E
Sbjct: 64 PLLASAYAFRFVGEWLKWLYTDVTERLAASDFATLPEAHACTAGLKSLTTTATADGIEEC 123
Query: 345 IQCLGGNGYINDYPTGRYLRDAKLYEIGAGTSEVRRIVIGRSINAEYK 392
+ GG+GY+ G + V ++ + R +
Sbjct: 124 RKLCGGHGYLWCSGLPELFAVYVPACTYEGDNVVLQLQVARFLMKTVA 171
>d1rx0a1 a.29.3.1 (A:241-393) Isobutyryl-CoA dehydrogenase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 153
Score = 98.6 bits (244), Expect = 2e-25
Identities = 44/149 (29%), Positives = 80/149 (53%), Gaps = 1/149 (0%)
Query: 240 KGAYVLMSGLDLERLVISAGPVGIMQACCDFAFNYVHERVQFGTRIGEFQLMQGKIADMH 299
+G + + GL+ R+ I++ +G A ++++ R QFG + Q +Q +ADM
Sbjct: 2 QGFLIAVRGLNGGRINIASCSLGAAHASVILTRDHLNVRKQFGEPLASNQYLQFTLADMA 61
Query: 300 VALSASRAYLYSVAKACDRGSIN-SKECAGVFLVAAENAVKVALEAIQCLGGNGYINDYP 358
L A+R + + A A + C+ L A + + +A+Q GG GY+ DY
Sbjct: 62 TRLVAARLMVRNAAVALQEERKDAVALCSMAKLFATDECFAICNQALQMHGGYGYLKDYA 121
Query: 359 TGRYLRDAKLYEIGAGTSEVRRIVIGRSI 387
+Y+RD+++++I G++EV RI+I RS+
Sbjct: 122 VQQYVRDSRVHQILEGSNEVMRILISRSL 150
>d3mdea1 a.29.3.1 (A:242-395) Medium chain acyl-CoA dehydrogenase,
C-domain {Pig (Sus scrofa) [TaxId: 9823]}
Length = 154
Score = 98.2 bits (243), Expect = 3e-25
Identities = 52/153 (33%), Positives = 80/153 (52%)
Query: 240 KGAYVLMSGLDLERLVISAGPVGIMQACCDFAFNYVHERVQFGTRIGEFQLMQGKIADMH 299
G + M D R ++AG VG+ Q D A Y ER FG + E Q + +ADM
Sbjct: 2 AGFKIAMGTFDKTRPPVAAGAVGLAQRALDEATKYALERKTFGKLLAEHQGISFLLADMA 61
Query: 300 VALSASRAYLYSVAKACDRGSINSKECAGVFLVAAENAVKVALEAIQCLGGNGYINDYPT 359
+ + +R A D G N+ + AA+ A ++A +A+Q GGNG+ +YP
Sbjct: 62 MKVELARLSYQRAAWEIDSGRRNTYYASIAKAYAADIANQLATDAVQVFGGNGFNTEYPV 121
Query: 360 GRYLRDAKLYEIGAGTSEVRRIVIGRSINAEYK 392
+ +RDAK+Y+I GT++++RI+I R YK
Sbjct: 122 EKLMRDAKIYQIYEGTAQIQRIIIAREHIGRYK 154
>d2ddha1 a.29.3.2 (A:278-460) Peroxisomal acyl-CoA oxidase-II,
domains 3 and 4 {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 183
Score = 93.4 bits (231), Expect = 4e-23
Identities = 25/160 (15%), Positives = 39/160 (24%), Gaps = 19/160 (11%)
Query: 252 ERLVISAGPVGIMQACCDFAFNYVHERVQFGT-------RIGEFQLMQGKIADMHVALSA 304
R + + C A Y R Q +I +FQ Q K+ + A
Sbjct: 4 VRSFLVGNAAQSLSKACTIAIRYSAVRRQSEIKQSEPEPQILDFQTQQYKLFPLLATAYA 63
Query: 305 SRAYLYSVAKACDR------------GSINSKECAGVFLVAAENAVKVALEAIQCLGGNG 352
+ + R AG+ A E GG+G
Sbjct: 64 FHFVGRYMKETYLRINESIGQGDLSELPELHALTAGLKAFTTWTANAGIEECRMACGGHG 123
Query: 353 YINDYPTGRYLRDAKLYEIGAGTSEVRRIVIGRSINAEYK 392
Y + G + V + R + Y
Sbjct: 124 YSHSSGIPNIYVTFTPACTFEGENTVMMLQTARFLMKIYD 163
>d1siqa1 a.29.3.1 (A:239-392) Glutaryl-CoA dehydrogenase GCDH {Human
(Homo sapiens) [TaxId: 9606]}
Length = 154
Score = 90.4 bits (223), Expect = 2e-22
Identities = 35/142 (24%), Positives = 66/142 (46%)
Query: 246 MSGLDLERLVISAGPVGIMQACCDFAFNYVHERVQFGTRIGEFQLMQGKIADMHVALSAS 305
L+ R I+ G +G + C A Y +R+QFG + QL+Q K+ADM ++
Sbjct: 5 FGCLNNARYGIAWGVLGASEFCLHTARQYALDRMQFGVPLARNQLIQKKLADMLTEITLG 64
Query: 306 RAYLYSVAKACDRGSINSKECAGVFLVAAENAVKVALEAIQCLGGNGYINDYPTGRYLRD 365
+ + D+ + + + A+ +A +A LGGNG ++Y R+ +
Sbjct: 65 LHACLQLGRLKDQDKAAPEMVSLLKRNNCGKALDIARQARDMLGGNGISDEYHVIRHAMN 124
Query: 366 AKLYEIGAGTSEVRRIVIGRSI 387
+ GT ++ +++GR+I
Sbjct: 125 LEAVNTYEGTHDIHALILGRAI 146
>d1r2ja1 a.29.3.1 (A:213-365) Protein FkbI {Streptomyces
hygroscopicus [TaxId: 1912]}
Length = 153
Score = 89.3 bits (220), Expect = 6e-22
Identities = 44/146 (30%), Positives = 65/146 (44%), Gaps = 1/146 (0%)
Query: 243 YVLMSGLDLERLVISAGPVGIMQACCDFAFNYVHERVQFGTRIGEFQLMQGKIADMHVAL 302
++ + L R ++ G VGI++AC A + R QFG +G+ QL+ G IAD+ A
Sbjct: 4 MLVAASLAYGRKSVAWGCVGILRACRTAAVAHARTREQFGRPLGDHQLVAGHIADLWTAE 63
Query: 303 SASRAYLYSVAKACD-RGSINSKECAGVFLVAAENAVKVALEAIQCLGGNGYINDYPTGR 361
+ + D VAAE A A A Q L G + R
Sbjct: 64 QIAARVCEYASDHWDEGSPEMVPATILAKHVAAERAAAGAATAAQVLASAGAREGHVVER 123
Query: 362 YLRDAKLYEIGAGTSEVRRIVIGRSI 387
RDAKL EI G+SE+ R+++ +
Sbjct: 124 AYRDAKLMEIIEGSSEMCRVMLAQHA 149
>d2c12a1 a.29.3.1 (A:261-430) Nitroalkane oxidase {Fusarium
oxysporum [TaxId: 5507]}
Length = 170
Score = 89.2 bits (220), Expect = 8e-22
Identities = 27/165 (16%), Positives = 66/165 (40%), Gaps = 13/165 (7%)
Query: 236 GGENKGAYVLMSGLDLERLVISAGPVGIMQACCDFAFNYVHERVQFGTR-IGEFQLMQGK 294
G + +G ++ + + ++ A +G +A + A + + G++ I E Q + K
Sbjct: 2 GLKAQG--LVETAFAMSAALVGAMAIGTARAAFEEALVFAKSDTRGGSKHIIEHQSVADK 59
Query: 295 IADMHVALSASRAYLYSVAKACDRGSINSKECAGVFLVAAEN----AVKVALEAIQCLGG 350
+ D + L SR ++ + ++ K + + AV+ ++A++ +G
Sbjct: 60 LIDCKIRLETSRLLVWKAVTTLEDEALEWKVKLEMAMQTKIYTTDVAVECVIDAMKAVGM 119
Query: 351 NGYINDYPTGRYLRDAKLYEIGAGTS------EVRRIVIGRSINA 389
Y D R L + Y + G + +++R++
Sbjct: 120 KSYAKDMSFPRLLNEVMCYPLFDGGNIGLRRRQMQRVMALEDYEP 164
>d2f9yb1 c.14.1.4 (B:23-285) Acetyl-coenzyme A carboxylase carboxyl
transferase subunit beta, AccD {Escherichia coli [TaxId:
562]}
Length = 263
Score = 28.2 bits (62), Expect = 1.5
Identities = 7/32 (21%), Positives = 13/32 (40%), Gaps = 4/32 (12%)
Query: 57 GLLGITVPEEFGGSEM----GYLDHVIAMEEL 84
+ +P F SE G +D ++ E+
Sbjct: 213 QTVREKLPPGFQRSEFLIEKGAIDMIVRRPEM 244
>d1ez0a_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH
{Vibrio harveyi [TaxId: 669]}
Length = 504
Score = 26.6 bits (57), Expect = 6.1
Identities = 7/35 (20%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 327 AGVFLVAAE-NAVKVALEAIQCLGGNGYINDYPTG 360
A + + V + ++ + G N +PTG
Sbjct: 403 ATIHATEEDYPQVSQLIPRLEEIAGRLVFNGWPTG 437
>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase
domain {Simian virus 40 [TaxId: 10633]}
Length = 362
Score = 26.2 bits (57), Expect = 7.5
Identities = 9/66 (13%), Positives = 17/66 (25%), Gaps = 4/66 (6%)
Query: 136 PGSGSDVISMSLKAEKKGDMYVLNG----NKFWITNGPDADIAVVYARTNPNADKKQHGI 191
SG ++ +L G +N F + D + V + +
Sbjct: 163 IDSGKTTLAAALLELCGGKALNVNLPLDRLNFELGVAIDQFLVVFEDVKGTGGESRDLPS 222
Query: 192 STFIVE 197
I
Sbjct: 223 GQGINN 228
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.135 0.393
Gapped
Lambda K H
0.267 0.0441 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,435,204
Number of extensions: 65587
Number of successful extensions: 201
Number of sequences better than 10.0: 1
Number of HSP's gapped: 166
Number of HSP's successfully gapped: 31
Length of query: 392
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 305
Effective length of database: 1,213,086
Effective search space: 369991230
Effective search space used: 369991230
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.3 bits)